Query 034364
Match_columns 96
No_of_seqs 108 out of 317
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 21:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rui_B Autophagy-related prote 100.0 2.6E-42 8.9E-47 233.7 9.7 94 2-95 3-96 (118)
2 3m95_A Autophagy related prote 100.0 3.1E-42 1.1E-46 235.3 8.3 94 2-95 9-102 (125)
3 3h9d_A ATG8, microtubule-assoc 100.0 3.4E-41 1.2E-45 228.5 7.8 92 4-95 6-97 (119)
4 2zjd_A Microtubule-associated 100.0 2.3E-39 7.8E-44 222.4 8.2 93 2-95 9-103 (130)
5 1eo6_A GATE-16, golgi-associat 100.0 3.4E-39 1.1E-43 217.8 8.2 94 2-95 1-94 (117)
6 2r2q_A Gamma-aminobutyric acid 100.0 3.6E-38 1.2E-42 210.6 8.2 93 3-95 1-93 (110)
7 4gdk_A Ubiquitin-like protein 99.8 1E-21 3.5E-26 127.3 6.2 66 28-95 4-70 (91)
8 1wz3_A Autophagy 12B, ATG12B, 99.8 6.3E-21 2.1E-25 124.7 4.9 64 27-95 11-75 (96)
9 3w1s_C Ubiquitin-like protein 99.8 9.6E-20 3.3E-24 118.1 5.4 64 27-95 6-70 (91)
10 3goe_A DNA repair protein RAD6 95.6 0.05 1.7E-06 34.1 6.3 48 47-94 21-68 (82)
11 3plu_A Ubiquitin-like modifier 89.4 1.8 6.2E-05 27.3 6.8 69 19-94 11-79 (93)
12 3n3k_B Ubiquitin; hydrolase, p 89.3 0.98 3.4E-05 26.3 5.2 46 49-95 17-62 (85)
13 3mtn_B UBA80, ubcep1, ubiquiti 89.3 1 3.5E-05 26.2 5.3 46 48-94 16-61 (85)
14 3a9j_A Ubiquitin; protein comp 88.7 1.2 4.3E-05 25.1 5.2 45 49-94 14-58 (76)
15 2dzi_A Ubiquitin-like protein 88.5 0.97 3.3E-05 26.1 4.8 45 49-94 21-65 (81)
16 1ndd_A NEDD8, protein (ubiquit 87.6 1.6 5.4E-05 24.6 5.2 45 49-94 14-58 (76)
17 4dwf_A HLA-B-associated transc 86.7 1.8 6.2E-05 25.7 5.3 62 27-95 3-64 (90)
18 1we6_A Splicing factor, putati 86.6 4.2 0.00014 25.3 8.1 69 22-94 20-89 (111)
19 4fbj_B NEDD8; effector-HOST ta 86.0 2.1 7E-05 25.7 5.3 46 49-95 14-59 (88)
20 3dbh_I NEDD8; cell cycle, acti 85.8 1.7 5.9E-05 25.4 4.8 46 49-95 26-71 (88)
21 2bwf_A Ubiquitin-like protein 85.6 2.5 8.5E-05 24.0 5.4 45 49-94 17-61 (77)
22 2faz_A Ubiquitin-like containi 85.5 1.8 6E-05 24.9 4.7 44 50-94 18-62 (78)
23 3phx_B Ubiquitin-like protein 85.3 2.6 9E-05 24.3 5.4 45 49-94 18-62 (79)
24 4eew_A Large proline-rich prot 85.3 2.4 8.1E-05 25.0 5.3 63 26-95 14-76 (88)
25 3k9o_B Ubiquitin, UBB+1; E2-25 85.1 2.3 7.8E-05 25.5 5.2 46 49-95 15-60 (96)
26 1yx5_B Ubiquitin; proteasome, 84.7 2.4 8.3E-05 25.7 5.3 45 49-94 14-58 (98)
27 2kd0_A LRR repeats and ubiquit 84.5 2.3 7.9E-05 25.4 5.0 45 50-95 26-70 (85)
28 3v6c_B Ubiquitin; structural g 84.3 2.7 9.2E-05 25.1 5.3 45 49-94 31-75 (91)
29 1wy8_A NP95-like ring finger p 83.9 1.6 5.4E-05 25.9 4.0 42 52-94 26-67 (89)
30 1we7_A SF3A1 protein; structur 83.4 6.3 0.00022 24.7 7.4 71 22-93 18-92 (115)
31 3m63_B Ubiquitin domain-contai 83.4 1.9 6.5E-05 26.8 4.4 61 27-95 26-86 (101)
32 4hcn_B Polyubiquitin, ubiquiti 83.2 2.8 9.5E-05 25.6 5.1 62 27-95 20-81 (98)
33 1sif_A Ubiquitin; hydrophobic 82.8 3.1 0.00011 24.8 5.1 45 49-94 23-67 (88)
34 1wh3_A 59 kDa 2'-5'-oligoadeny 82.7 3 0.0001 24.4 5.0 61 27-94 5-65 (87)
35 2uyz_B Small ubiquitin-related 82.3 2.3 7.8E-05 24.5 4.3 46 48-94 16-61 (79)
36 3m62_B UV excision repair prot 82.3 2.1 7.2E-05 26.7 4.3 46 49-95 15-60 (106)
37 2ojr_A Ubiquitin; lanthide-bin 81.7 5.5 0.00019 24.8 6.2 46 49-95 49-94 (111)
38 3vdz_A Ubiquitin-40S ribosomal 80.0 5.3 0.00018 25.0 5.7 46 49-95 49-94 (111)
39 2hj8_A Interferon-induced 17 k 79.7 2 6.8E-05 25.7 3.4 45 49-94 18-62 (88)
40 2klc_A Ubiquilin-1; ubiquitin- 79.3 4.2 0.00014 25.0 5.0 60 27-94 23-82 (101)
41 1j8c_A Ubiquitin-like protein 77.8 6.1 0.00021 25.5 5.6 46 49-95 45-90 (125)
42 1yqb_A Ubiquilin 3; structural 77.2 2.5 8.7E-05 26.1 3.4 60 27-94 20-79 (100)
43 2kk8_A Uncharacterized protein 76.8 2.1 7.2E-05 25.6 2.9 45 49-94 24-69 (84)
44 3rt3_B Ubiquitin-like protein 76.7 4.3 0.00015 26.5 4.7 46 49-94 16-62 (159)
45 1wyw_B Ubiquitin-like protein 75.4 4.6 0.00016 24.6 4.3 62 26-94 18-79 (97)
46 1wm3_A Ubiquitin-like protein 75.2 9.5 0.00032 21.9 5.8 48 47-95 13-60 (72)
47 2kdi_A Ubiquitin, vacuolar pro 74.8 5.1 0.00018 25.3 4.5 44 50-94 24-67 (114)
48 1wx7_A Ubiquilin 3; ubiquitin- 74.7 3.9 0.00013 25.3 3.8 45 49-94 30-74 (106)
49 1oey_A P67-PHOX, neutrophil cy 74.3 2.7 9.1E-05 26.0 2.9 31 51-81 19-49 (83)
50 1wju_A NEDD8 ultimate buster-1 73.6 4.1 0.00014 25.8 3.8 46 48-94 32-77 (100)
51 2l7r_A Ubiquitin-like protein 73.6 5.1 0.00017 24.2 4.1 59 27-94 17-75 (93)
52 3b08_A Polyubiquitin-C, ubiqui 73.1 5.2 0.00018 25.4 4.3 45 49-94 14-58 (152)
53 1uel_A HHR23B, UV excision rep 72.6 7.7 0.00026 23.3 4.8 45 49-94 14-61 (95)
54 2io0_B Small ubiquitin-related 72.2 14 0.00048 22.5 6.5 48 47-95 17-64 (91)
55 3b08_A Polyubiquitin-C, ubiqui 71.8 10 0.00035 24.0 5.5 46 48-94 89-134 (152)
56 2wyq_A HHR23A, UV excision rep 71.7 12 0.00041 21.5 6.1 61 27-94 3-66 (85)
57 1ttn_A DC-UBP, dendritic cell- 71.6 6.7 0.00023 24.2 4.4 45 49-94 37-81 (106)
58 2kc2_A Talin-1, F1; FERM, adhe 71.2 7.2 0.00025 25.9 4.6 40 42-82 18-57 (128)
59 1wx8_A Riken cDNA 4931431F19; 70.1 5.8 0.0002 23.7 3.8 45 49-94 30-74 (96)
60 2lxa_A Ubiquitin-like protein 69.9 7.1 0.00024 23.7 4.1 42 52-94 20-62 (87)
61 4dbg_A Ranbp-type and C3HC4-ty 68.7 8.9 0.0003 24.4 4.5 46 48-94 39-84 (105)
62 3b1l_X E3 ubiquitin-protein li 71.6 1 3.6E-05 25.8 0.0 44 50-94 15-58 (76)
63 4b6w_A Tubulin-specific chaper 68.2 8.4 0.00029 23.2 4.2 44 51-94 20-69 (86)
64 4a20_A Ubiquitin-like protein 67.9 7.6 0.00026 24.1 4.0 43 52-95 38-81 (98)
65 3rt3_B Ubiquitin-like protein 67.5 14 0.00047 24.0 5.5 45 49-94 95-139 (159)
66 1wgd_A Homocysteine-responsive 65.6 7.5 0.00026 23.2 3.6 42 52-94 26-69 (93)
67 1wjn_A Tubulin-folding protein 65.5 12 0.0004 22.6 4.5 31 51-81 28-59 (97)
68 1x1m_A Ubiquitin-like protein 65.0 13 0.00044 22.9 4.7 39 55-94 44-85 (107)
69 1ip9_A BEM1 protein; ubiquitin 64.8 15 0.00053 22.8 4.9 30 50-80 26-55 (85)
70 2kan_A Uncharacterized protein 64.8 6.2 0.00021 24.0 3.1 61 26-94 12-73 (94)
71 1v5t_A 8430435I17RIK protein; 64.5 7.1 0.00024 23.4 3.3 43 51-93 23-67 (90)
72 1v5o_A 1700011N24RIK protein; 63.7 4.3 0.00015 25.0 2.2 43 50-93 26-69 (102)
73 2io1_B Small ubiquitin-related 63.7 14 0.00046 22.7 4.6 48 47-95 19-66 (94)
74 1wgg_A Ubiquitin carboxyl-term 63.6 9.2 0.00031 23.3 3.8 43 50-94 22-64 (96)
75 3l0w_B Monoubiquitinated proli 62.7 13 0.00044 25.1 4.7 45 49-94 14-58 (169)
76 3u30_A Ubiquitin, linear DI-ub 62.6 18 0.00061 23.9 5.4 45 49-94 34-78 (172)
77 2d07_B Ubiquitin-like protein 61.8 20 0.00069 21.7 5.1 62 27-95 15-76 (93)
78 2eke_C Ubiquitin-like protein 61.4 22 0.00077 22.4 5.4 48 47-95 42-89 (106)
79 1wf9_A NPL4 family protein; be 61.2 5 0.00017 25.0 2.2 29 50-78 21-51 (107)
80 1uh6_A Ubiquitin-like 5; beta- 60.0 9.6 0.00033 24.1 3.4 44 49-93 42-85 (100)
81 2kjr_A CG11242; UBL, ubiquitin 60.0 14 0.00049 22.6 4.2 51 27-81 13-63 (95)
82 4ajy_B Transcription elongatio 59.7 16 0.00054 23.8 4.5 42 52-94 18-59 (118)
83 1yfb_A Transition state regula 59.3 7.5 0.00026 22.3 2.6 21 63-83 28-48 (59)
84 3u5e_m 60S ribosomal protein L 58.6 2 7E-05 27.6 0.0 44 50-94 15-58 (128)
85 1wz0_A Ubiquitin-like protein 58.3 31 0.0011 21.5 5.6 47 47-94 36-82 (104)
86 2fnj_B Transcription elongatio 57.7 11 0.00037 24.5 3.5 43 51-94 17-59 (118)
87 2l32_A Small archaeal modifier 57.2 12 0.00042 22.0 3.4 37 49-90 14-50 (74)
88 2kdb_A Homocysteine-responsive 56.9 8.8 0.0003 23.8 2.8 62 27-94 21-85 (99)
89 1wxv_A BAG-family molecular ch 56.7 11 0.00036 22.4 3.1 44 49-93 20-69 (92)
90 1ryj_A Unknown; beta/alpha pro 55.9 26 0.0009 20.0 5.3 40 49-93 17-56 (70)
91 2l66_A SSO7C4, transcriptional 55.8 10 0.00035 20.8 2.7 21 63-83 18-38 (53)
92 3q3f_A Ribonuclease/ubiquitin 55.3 21 0.00072 24.8 4.8 45 49-94 119-163 (189)
93 2kj6_A Tubulin folding cofacto 53.7 22 0.00074 21.9 4.3 52 27-82 12-63 (97)
94 1wia_A Hypothetical ubiquitin- 52.2 16 0.00056 21.6 3.5 42 49-94 21-63 (95)
95 3a4r_A Nfatc2-interacting prot 52.2 26 0.0009 20.4 4.3 45 48-93 21-65 (79)
96 2dzm_A FAS-associated factor 1 51.6 11 0.00036 23.6 2.6 44 50-94 23-67 (100)
97 3u5c_f 40S ribosomal protein S 51.4 3.1 0.00011 28.0 0.0 44 50-94 15-58 (152)
98 2kzr_A Ubiquitin thioesterase 51.0 23 0.00079 20.7 4.0 44 52-95 17-64 (86)
99 1v86_A DNA segment, CHR 7, way 50.4 6 0.0002 24.0 1.2 43 49-93 30-72 (95)
100 1vd2_A Protein kinase C, IOTA 48.2 31 0.0011 21.3 4.3 35 48-82 18-53 (89)
101 3u30_A Ubiquitin, linear DI-ub 47.8 35 0.0012 22.4 4.9 45 49-94 110-154 (172)
102 1v2y_A 3300001G02RIK protein; 45.8 5.4 0.00019 25.3 0.5 45 50-94 22-81 (105)
103 2kmm_A Guanosine-3',5'-BIS(dip 45.2 35 0.0012 18.9 4.0 43 47-92 10-52 (73)
104 2gow_A HCG-1 protein, ubiquiti 45.1 27 0.00093 22.6 3.9 48 47-94 29-83 (125)
105 3po0_A Small archaeal modifier 45.0 33 0.0011 20.1 4.0 45 49-93 21-75 (89)
106 1wgh_A Ubiquitin-like 3, HCG-1 44.8 57 0.002 20.8 5.4 48 47-94 28-82 (116)
107 2dzj_A Synaptic glycoprotein S 42.6 28 0.00095 20.8 3.4 44 51-94 29-74 (88)
108 2ylm_A Ubiquitin carboxyl-term 41.7 37 0.0013 27.0 4.8 49 47-95 353-408 (530)
109 1vjk_A Molybdopterin convertin 41.7 47 0.0016 20.0 4.4 45 49-93 30-84 (98)
110 4efo_A Serine/threonine-protei 41.4 47 0.0016 20.7 4.4 38 47-84 25-62 (94)
111 2k8h_A Small ubiquitin protein 41.4 65 0.0022 20.3 5.7 55 27-87 24-78 (110)
112 3hvz_A Uncharacterized protein 41.2 40 0.0014 20.0 3.9 42 48-92 16-57 (78)
113 1fm0_D Molybdopterin convertin 40.5 42 0.0014 19.1 3.9 39 53-92 23-66 (81)
114 3kyd_D Small ubiquitin-related 40.2 72 0.0025 20.5 5.4 61 27-94 38-98 (115)
115 3shq_A UBLCP1; phosphatase, hy 39.5 18 0.00063 26.9 2.6 46 50-95 19-66 (320)
116 3ai5_A Yeast enhanced green fl 38.7 39 0.0013 25.2 4.3 45 49-94 247-291 (307)
117 1pqs_A Cell division control p 38.7 19 0.00067 21.6 2.2 24 49-72 5-28 (77)
118 1f0z_A THis protein; ubiquitin 38.6 46 0.0016 18.5 3.8 34 47-85 7-40 (66)
119 1q1o_A Cell division control p 38.4 18 0.00061 23.0 2.0 27 47-73 24-50 (98)
120 2daf_A FLJ35834 protein; hypot 37.5 49 0.0017 21.6 4.1 46 48-94 29-74 (118)
121 1t0y_A Tubulin folding cofacto 37.0 77 0.0026 19.8 8.1 50 28-82 5-54 (122)
122 2ylm_A Ubiquitin carboxyl-term 36.3 37 0.0013 26.9 4.1 31 50-80 151-181 (530)
123 1se9_A Ubiquitin family; ubiqu 35.8 71 0.0024 20.8 4.8 45 50-94 32-82 (126)
124 2pjh_A Protein NPL4, nuclear p 35.6 19 0.00063 21.4 1.7 28 52-79 20-48 (80)
125 3rpf_C Molybdopterin convertin 35.5 48 0.0016 18.8 3.6 40 54-93 19-60 (74)
126 2kvr_A Ubiquitin carboxyl-term 33.1 52 0.0018 21.4 3.8 35 48-82 58-93 (130)
127 1v6e_A Cytoskeleton-associated 32.2 80 0.0027 18.6 7.2 48 28-80 6-54 (95)
128 2q5w_D Molybdopterin convertin 29.4 44 0.0015 18.8 2.7 40 51-92 21-62 (77)
129 2w1t_A Spovt, stage V sporulat 28.2 42 0.0014 23.3 2.8 20 63-82 20-39 (178)
130 1tyg_B YJBS; alpha beta barrel 28.0 82 0.0028 19.0 3.8 37 46-87 26-64 (87)
131 2i1s_A Hypothetical protein; m 27.2 1.1E+02 0.0039 20.5 4.9 29 47-75 23-51 (188)
132 3s5o_A 4-hydroxy-2-oxoglutarat 26.4 60 0.0021 23.6 3.5 28 10-37 64-91 (307)
133 1ug8_A Poly(A)-specific ribonu 25.3 49 0.0017 20.5 2.4 18 14-31 41-58 (87)
134 3eb2_A Putative dihydrodipicol 25.0 43 0.0015 24.4 2.4 29 10-38 54-82 (300)
135 3tix_A Ubiquitin-like protein 25.0 1.3E+02 0.0044 21.5 4.9 61 27-95 55-115 (207)
136 3l21_A DHDPS, dihydrodipicolin 24.9 49 0.0017 24.1 2.8 29 10-38 65-93 (304)
137 1rws_A Hypothetical protein PF 24.8 47 0.0016 19.1 2.2 41 47-92 22-62 (77)
138 2g1e_A Hypothetical protein TA 24.6 1.1E+02 0.0036 17.6 4.0 36 50-85 19-64 (90)
139 3b4u_A Dihydrodipicolinate syn 24.4 75 0.0026 22.9 3.7 29 10-38 53-81 (294)
140 2yxg_A DHDPS, dihydrodipicolin 24.2 52 0.0018 23.7 2.8 29 10-38 50-78 (289)
141 3h5d_A DHDPS, dihydrodipicolin 23.7 71 0.0024 23.4 3.5 29 10-38 57-85 (311)
142 3e96_A Dihydrodipicolinate syn 23.6 53 0.0018 24.0 2.8 28 10-37 62-89 (316)
143 3cpr_A Dihydrodipicolinate syn 23.5 54 0.0018 23.9 2.8 29 10-38 66-94 (304)
144 3a5f_A Dihydrodipicolinate syn 23.5 55 0.0019 23.6 2.8 29 10-38 51-79 (291)
145 3qze_A DHDPS, dihydrodipicolin 23.3 55 0.0019 24.0 2.8 29 10-38 73-101 (314)
146 2ehh_A DHDPS, dihydrodipicolin 23.3 55 0.0019 23.6 2.8 29 10-38 50-78 (294)
147 3flu_A DHDPS, dihydrodipicolin 23.2 56 0.0019 23.7 2.8 29 10-38 57-85 (297)
148 3fkr_A L-2-keto-3-deoxyarabona 22.9 57 0.0019 23.8 2.8 29 10-38 58-86 (309)
149 3tak_A DHDPS, dihydrodipicolin 22.9 57 0.002 23.5 2.8 29 10-38 51-79 (291)
150 2ojp_A DHDPS, dihydrodipicolin 22.8 58 0.002 23.5 2.8 29 10-38 51-79 (292)
151 1f6k_A N-acetylneuraminate lya 22.6 58 0.002 23.5 2.8 29 10-38 54-82 (293)
152 2xzm_9 RPS31E; ribosome, trans 22.5 18 0.00062 25.3 0.0 42 50-92 15-56 (189)
153 2jxx_A Nfatc2-interacting prot 22.3 1.4E+02 0.0049 18.3 4.3 57 25-86 21-77 (97)
154 1wgk_A Riken cDNA 2900073H19 p 22.3 1.2E+02 0.004 19.1 3.9 35 50-84 34-81 (114)
155 2wkj_A N-acetylneuraminate lya 22.3 59 0.002 23.6 2.8 29 10-38 61-89 (303)
156 3na8_A Putative dihydrodipicol 22.3 52 0.0018 24.2 2.4 29 10-38 74-102 (315)
157 2eki_A DRG 1, developmentally- 22.2 95 0.0032 19.3 3.3 40 38-81 18-58 (93)
158 3jyu_A Ubiquitin carboxyl-term 22.2 1.6E+02 0.0054 20.5 4.9 46 49-94 155-206 (231)
159 3d0c_A Dihydrodipicolinate syn 22.0 60 0.002 23.8 2.8 29 10-38 62-90 (314)
160 3pge_A SUMO-modified prolifera 21.8 2.1E+02 0.0071 19.9 5.5 60 27-94 27-86 (200)
161 3daq_A DHDPS, dihydrodipicolin 21.8 62 0.0021 23.3 2.8 29 10-38 52-80 (292)
162 3mly_P HIV-1 GP120 third varia 21.8 20 0.0007 16.1 0.1 14 66-79 4-17 (23)
163 2r8w_A AGR_C_1641P; APC7498, d 21.5 62 0.0021 24.0 2.8 29 10-38 84-112 (332)
164 3dz1_A Dihydrodipicolinate syn 21.5 80 0.0027 23.0 3.4 28 10-38 58-85 (313)
165 1xky_A Dihydrodipicolinate syn 21.5 63 0.0022 23.4 2.8 29 10-38 62-90 (301)
166 2rfg_A Dihydrodipicolinate syn 21.4 55 0.0019 23.7 2.4 29 10-38 50-78 (297)
167 3m5v_A DHDPS, dihydrodipicolin 21.3 64 0.0022 23.4 2.8 29 10-38 57-86 (301)
168 1o5k_A DHDPS, dihydrodipicolin 21.2 64 0.0022 23.5 2.8 29 10-38 62-90 (306)
169 2rdm_A Response regulator rece 21.1 90 0.0031 18.0 3.0 54 17-72 68-124 (132)
170 4dpp_A DHDPS 2, dihydrodipicol 20.8 64 0.0022 24.5 2.8 29 10-38 109-137 (360)
171 3uji_P Envelope glycoprotein G 20.6 22 0.00076 16.0 0.1 13 66-78 4-16 (23)
172 3si9_A DHDPS, dihydrodipicolin 20.5 59 0.002 23.9 2.4 29 10-38 72-100 (315)
173 3qfe_A Putative dihydrodipicol 20.5 68 0.0023 23.5 2.8 29 10-38 61-89 (318)
174 2vc6_A MOSA, dihydrodipicolina 20.4 60 0.0021 23.4 2.4 29 10-38 50-78 (292)
No 1
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=2.6e-42 Score=233.67 Aligned_cols=94 Identities=67% Similarity=1.094 Sum_probs=89.8
Q ss_pred CCCcccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEE
Q 034364 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV 81 (96)
Q Consensus 2 ~~~~fK~~~~~e~R~~e~~~ir~kyP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~V 81 (96)
|+++||++||||+|++|+++||+|||+|||||||+++++++|+||++|||||.++||+||+.+||++|+|++++||||||
T Consensus 3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 82 (118)
T 3rui_B 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV 82 (118)
T ss_dssp ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCcccccC
Q 034364 82 KNILPPTGMKMASF 95 (96)
Q Consensus 82 nn~lp~~~~~m~~l 95 (96)
||++|++|++||+|
T Consensus 83 n~~~p~~~~~m~~l 96 (118)
T 3rui_B 83 NDTLPPTAALMSAI 96 (118)
T ss_dssp TTBCCCTTSBHHHH
T ss_pred CCccCCccchHHHH
Confidence 99999999999986
No 2
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=3.1e-42 Score=235.31 Aligned_cols=94 Identities=57% Similarity=1.013 Sum_probs=92.3
Q ss_pred CCCcccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEE
Q 034364 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV 81 (96)
Q Consensus 2 ~~~~fK~~~~~e~R~~e~~~ir~kyP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~V 81 (96)
|+++||++||||+|++|+++||+|||+|||||||+++++++|+|||+|||||.++||+||+.+||+||+|++++||||||
T Consensus 9 ~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V 88 (125)
T 3m95_A 9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV 88 (125)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred ceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCcccccC
Q 034364 82 KNILPPTGMKMASF 95 (96)
Q Consensus 82 nn~lp~~~~~m~~l 95 (96)
||++|++|++||+|
T Consensus 89 nn~lPs~s~~m~~l 102 (125)
T 3m95_A 89 NNVIPPTSATMGSL 102 (125)
T ss_dssp TTBCCCTTSBHHHH
T ss_pred CCccCCccchHHHH
Confidence 99999999999986
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=3.4e-41 Score=228.50 Aligned_cols=92 Identities=45% Similarity=0.869 Sum_probs=90.4
Q ss_pred CcccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcC
Q 034364 4 NSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN 83 (96)
Q Consensus 4 ~~fK~~~~~e~R~~e~~~ir~kyP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn 83 (96)
++||++||||+|++|+++||++||+|||||||+++++++|+||++|||||.++||+||+.+||++|+|++++||||||||
T Consensus 6 ~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 85 (119)
T 3h9d_A 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND 85 (119)
T ss_dssp CHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccC
Q 034364 84 ILPPTGMKMASF 95 (96)
Q Consensus 84 ~lp~~~~~m~~l 95 (96)
++|++|++||+|
T Consensus 86 ~~p~~~~~m~~l 97 (119)
T 3h9d_A 86 TVLPSSAQMADI 97 (119)
T ss_dssp EECCTTSBHHHH
T ss_pred cCCCccchHHHH
Confidence 999999999986
No 4
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=2.3e-39 Score=222.39 Aligned_cols=93 Identities=28% Similarity=0.608 Sum_probs=90.5
Q ss_pred CCCcccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC-CCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEE-
Q 034364 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSD-VPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFI- 79 (96)
Q Consensus 2 ~~~~fK~~~~~e~R~~e~~~ir~kyP~kIpVIvEr~~~~~-lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl- 79 (96)
|+ +||++||||+|++|+++||++||+|||||||++++++ +|+|||+|||||.++||+||+.+||+||+|++++||||
T Consensus 9 m~-~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~ 87 (130)
T 2zjd_A 9 EK-TFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLL 87 (130)
T ss_dssp CC-CHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred hh-HHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEE
Confidence 44 8999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEcCccCCCCcccccC
Q 034364 80 FVKNILPPTGMKMASF 95 (96)
Q Consensus 80 ~Vnn~lp~~~~~m~~l 95 (96)
||||.+|++|++||+|
T Consensus 88 ~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 88 VNGHSMVSVSTPISEV 103 (130)
T ss_dssp ETTTEECCTTSBHHHH
T ss_pred EECCccCCccchHHHH
Confidence 9999999999999986
No 5
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=3.4e-39 Score=217.82 Aligned_cols=94 Identities=52% Similarity=0.922 Sum_probs=91.6
Q ss_pred CCCcccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEE
Q 034364 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV 81 (96)
Q Consensus 2 ~~~~fK~~~~~e~R~~e~~~ir~kyP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~V 81 (96)
|+++||++||||+|++|+++||++||+|||||||+++++++|.||++||+||.++||+||+.+||++|+|++++||||||
T Consensus 1 ~~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v 80 (117)
T 1eo6_A 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV 80 (117)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred CCcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCcccccC
Q 034364 82 KNILPPTGMKMASF 95 (96)
Q Consensus 82 nn~lp~~~~~m~~l 95 (96)
||.+|++|++||+|
T Consensus 81 n~~~p~~~~~m~~L 94 (117)
T 1eo6_A 81 DKTVPQSSLTMGQL 94 (117)
T ss_dssp TTBCCCTTSBHHHH
T ss_pred CCEecCccchHHHH
Confidence 99999999999986
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=3.6e-38 Score=210.63 Aligned_cols=93 Identities=56% Similarity=1.027 Sum_probs=90.5
Q ss_pred CCcccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEc
Q 034364 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (96)
Q Consensus 3 ~~~fK~~~~~e~R~~e~~~ir~kyP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vn 82 (96)
+++||++||||+|++|+++||++||+|||||||+++++++|.|+++||+||.++||+||+.+||++|+|++++|||||||
T Consensus 1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN 80 (110)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCcccccC
Q 034364 83 NILPPTGMKMASF 95 (96)
Q Consensus 83 n~lp~~~~~m~~l 95 (96)
|.+|++|++||+|
T Consensus 81 ~~~p~~~~~m~~L 93 (110)
T 2r2q_A 81 NTIPPTSATMGQL 93 (110)
T ss_dssp TBCCCTTSBHHHH
T ss_pred CEecCccChHHHH
Confidence 9999999999986
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=99.85 E-value=1e-21 Score=127.32 Aligned_cols=66 Identities=21% Similarity=0.485 Sum_probs=58.6
Q ss_pred CcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCcc-CCCCcccccC
Q 034364 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL-PPTGMKMASF 95 (96)
Q Consensus 28 ~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~l-p~~~~~m~~l 95 (96)
.||-|.... -+++|+|+++||+||.++|++||+.+||+||+|++++||||||||.+ |++|++||+|
T Consensus 4 ~Kv~v~fk~--~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~L 70 (91)
T 4gdk_A 4 KKIDILLKA--VGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTL 70 (91)
T ss_dssp CEEEEEEEE--CSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHH
T ss_pred ceEEEEEEe--cCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHH
Confidence 355555544 38999999999999999999999999999999999999999999965 8889999986
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=99.82 E-value=6.3e-21 Score=124.73 Aligned_cols=64 Identities=14% Similarity=0.369 Sum_probs=60.0
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcC-ccCCCCcccccC
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN-ILPPTGMKMASF 95 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn-~lp~~~~~m~~l 95 (96)
|+||+|+++.. +++|.|+++||+||.++|+++|+.+||+||+|+ |||||||| .+|++|++||+|
T Consensus 11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~L 75 (96)
T 1wz3_A 11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDL 75 (96)
T ss_dssp -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHH
T ss_pred CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHH
Confidence 88999999887 679999999999999999999999999999998 99999999 679999999986
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=9.6e-20 Score=118.13 Aligned_cols=64 Identities=8% Similarity=0.351 Sum_probs=50.9
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCcc-CCCCcccccC
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL-PPTGMKMASF 95 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~l-p~~~~~m~~l 95 (96)
|+||-|..... +++|+|+++||+||.++|+++|+.+||+||++ +||||||||.+ |++|++||+|
T Consensus 6 ~~Kv~vrfk~~--g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~L 70 (91)
T 3w1s_C 6 IQKIQIKFQPI--GSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGEL 70 (91)
T ss_dssp CCEEEEEEEEC--CC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHH
T ss_pred CCeEEEEEEec--CCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHH
Confidence 67777777554 89999999999999999999999999999999 79999999965 9999999986
No 10
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=95.57 E-value=0.05 Score=34.10 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=39.7
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.-+|-||.+.+|++++..-|++-+++++.++.|..++.-...+++..+
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~D 68 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQS 68 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGG
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhh
Confidence 348999999999999999999999999999999888855444444443
No 11
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=89.40 E-value=1.8 Score=27.31 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=45.6
Q ss_pred HHHHHhhCCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 19 AARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 19 ~~~ir~kyP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+..+....|.+|-|.|.-. .+ ++..+-|..+.||++|...|-.+.++++++---.| ++.....+.++++
T Consensus 11 ~~~~~~~~~~mIqI~Vk~~-~G-----kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~d 79 (93)
T 3plu_A 11 SSGLVPRGSHMIEVVVNDR-LG-----KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLED 79 (93)
T ss_dssp ---------CEEEEEEECT-TS-----CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTGG
T ss_pred cccccCCCCceEEEEEECC-CC-----CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHHH
Confidence 4456667788999999542 12 23456789999999999999999999988766566 6666777777765
No 12
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=89.33 E-value=0.98 Score=26.31 Aligned_cols=46 Identities=9% Similarity=0.169 Sum_probs=35.3
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
.+-|+.+.||+++...|.++.++++++-- |+.++.....+.++++.
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~qr-L~~~g~~L~d~~tL~~~ 62 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY 62 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETBEECCTTCBTTTT
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHEE-EEECCeECCCCCCHHHC
Confidence 45688999999999999999999887543 44466666667777653
No 13
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=89.31 E-value=1 Score=26.16 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=35.2
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
..+-|+.+.||+++...|.++.++++++-- |+.++.....+.++++
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~qr-L~~~g~~L~d~~tL~~ 61 (85)
T 3mtn_B 16 ITLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSD 61 (85)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBTGG
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHEE-EEECCEECCCCCCHHH
Confidence 345689999999999999999999876543 3347766667777765
No 14
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=88.65 E-value=1.2 Score=25.07 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=33.8
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|.+..++++++--. +.++.....+.++++
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L-~~~g~~L~d~~tL~~ 58 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSD 58 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEE-EETTEECCTTCBTGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEE-EECCeECCCCCcHHH
Confidence 456899999999999999999998765444 446655555667765
No 15
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.52 E-value=0.97 Score=26.09 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=33.9
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|.+..++++++--.+| ++.....+.++++
T Consensus 21 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~-~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 21 SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF-KGKALADGKRLSD 65 (81)
T ss_dssp EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE-TTEECCTTSBGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE-CCeECCCCCcHHH
Confidence 45689999999999999999999876544443 6655556677765
No 16
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=87.56 E-value=1.6 Score=24.61 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=34.0
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|.+..++++++-- |+.++.....+.++++
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~q~-L~~~g~~L~d~~tL~~ 58 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQQR-LIYSGKQMNDEKTAAD 58 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBGGG
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHEE-EEECCEECCCCCcHHH
Confidence 45689999999999999999999876544 4446655566667765
No 17
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=86.69 E-value=1.8 Score=25.68 Aligned_cols=62 Identities=21% Similarity=0.443 Sum_probs=42.2
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
|..+-|.|.- .++. ...+-|+.+.||+++...|..+.++.+++--.+| ++.....+.++++.
T Consensus 3 ~~~m~i~Vk~-~~g~-----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~Gk~L~d~~tL~~~ 64 (90)
T 4dwf_A 3 PDSLEVLVKT-LDSQ-----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-QGRVLQDDKKLQEY 64 (90)
T ss_dssp CCEEEEEEEE-TTCC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBGGGG
T ss_pred CcEEEEEEEc-CCCC-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCeECCCCCCHHHc
Confidence 4555666633 2221 2345689999999999999999999877654444 66666677777653
No 18
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=86.56 E-value=4.2 Score=25.33 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=45.9
Q ss_pred HHhhCCCcccEEEEccCCCCCCCcceeeEEecC-CCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 22 IRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPA-DLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 22 ir~kyP~kIpVIvEr~~~~~lp~l~k~KflVp~-~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
...++|.-|-|.|. .+.. +.=+...+-|+. +.||+++...|....++++++--.+ .++.+...+.++++
T Consensus 20 ~l~~~~~~i~i~Vk-~~~~--~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~-~~Gk~L~D~~tL~~ 89 (111)
T 1we6_A 20 FLAQHPGPATIRVS-KPNE--NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLS-GKAGFLKDNMSLAH 89 (111)
T ss_dssp HHHHCCSCEEEEEC-CTTC--SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEE-CSSSBCCTTSBTTT
T ss_pred HHHhCCCcEEEEEE-eccc--CCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEE-ECCEECCCCCcHHH
Confidence 34578888888884 3310 000123456897 9999999999999999987644333 36666666677765
No 19
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=85.96 E-value=2.1 Score=25.66 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=35.1
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++.
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~ 59 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDEKTAADY 59 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTSBTTTT
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEEEE-ECCeECCCCCcHHHc
Confidence 4568899999999999999999987655444 466666677777653
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=85.79 E-value=1.7 Score=25.43 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=34.9
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++.
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~G~~L~d~~tL~~~ 71 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDEKTAADY 71 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETTEECCTTSBGGGG
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHHEEEE-ECCeECCCCCcHHHc
Confidence 4568999999999999999999987654333 466666667777653
No 21
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=85.59 E-value=2.5 Score=24.00 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=34.2
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|....++++++--.+ .++.....+.++++
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~gk~L~d~~tL~~ 61 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKANGIPVANQRLI-YSGKILKDDQTVES 61 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGG
T ss_pred EEEECCCCcHHHHHHHHHHHhCCCHHHEEEE-ECCeEcCCCCCHHH
Confidence 4568999999999999999999987654444 45655566677765
No 22
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=85.51 E-value=1.8 Score=24.93 Aligned_cols=44 Identities=7% Similarity=0.096 Sum_probs=33.3
Q ss_pred EE-ecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 50 YL-VPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 50 fl-Vp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+- |+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~-~g~~L~d~~tL~~ 62 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGLQRLFY-RGKQMEDGHTLFD 62 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTCBTTT
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhhEEEEE-CCEECCCCCCHHH
Confidence 44 88999999999999999999876554444 5655566677765
No 23
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=85.34 E-value=2.6 Score=24.26 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=34.9
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~gip~~~qr-L~~~G~~L~d~~tL~~ 62 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFW-LTFEGKPLEDQLPLGE 62 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGG
T ss_pred EEEECCcChHHHHHHHHHhhcCCCHHHEE-EEECCEECCCCCcHHH
Confidence 45689999999999999999999877643 3446666666777765
No 24
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=85.30 E-value=2.4 Score=25.03 Aligned_cols=63 Identities=21% Similarity=0.430 Sum_probs=43.5
Q ss_pred CCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 26 YPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 26 yP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
-|+.+-|.|.-. ++. ...+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++.
T Consensus 14 ~~~~m~i~Vk~~-~g~-----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~Gk~L~D~~tL~~~ 76 (88)
T 4eew_A 14 EPDSLEVLVKTL-DSQ-----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-QGRVLQDDKKLQEY 76 (88)
T ss_dssp -CCEEEEEEEET-TSC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBGGGG
T ss_pred CCCeEEEEEEcC-CCC-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCEECCCCCcHHHc
Confidence 466677777432 122 2245689999999999999999999877654444 66666777777653
No 25
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=85.14 E-value=2.3 Score=25.48 Aligned_cols=46 Identities=9% Similarity=0.185 Sum_probs=35.1
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
.+-|+.+.||+++...|.++.+++++.-- |+.++.....+.++++.
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~qr-L~~~G~~L~d~~tL~~~ 60 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY 60 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBTGGG
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhHEE-EEECCEECCCCCcHHHc
Confidence 45689999999999999999999876543 44466666677777653
No 26
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=84.74 E-value=2.4 Score=25.67 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=33.8
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|.+..++++++--.+ .++.....+.++++
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~-~~Gk~L~D~~tL~~ 58 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSD 58 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGGEEEE-ETTEECCTTSBTGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECCEECCCCCCHHH
Confidence 4568899999999999999999987654444 46655556667665
No 27
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=84.51 E-value=2.3 Score=25.41 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=33.5
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
.-|+.+.||+++...|....++++++--.+ .++.....+.++++.
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~ 70 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQKLI-FKGKVLVETSTLKQS 70 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTCEEE-ETTEECCTTCBTTTT
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECCeECCCcCCHHHC
Confidence 458999999999999999999986543333 466665667777653
No 28
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=84.30 E-value=2.7 Score=25.12 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=34.7
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|.++.++.+++--.+ .++.....+.++++
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~ 75 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSD 75 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTCBTGG
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhEEEE-ECCeECCCcCcHHH
Confidence 4568999999999999999999987654333 46666667777765
No 29
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.92 E-value=1.6 Score=25.86 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=31.9
Q ss_pred ecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 52 VPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 52 Vp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~gk~L~d~~tL~~ 67 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQRLFY-RGKQLENGYTLFD 67 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTEEEEE-TTEECCSSSBHHH
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhEEEEE-CCeECCCCCCHHH
Confidence 89999999999999999999877654444 5655556666653
No 30
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=83.41 E-value=6.3 Score=24.69 Aligned_cols=71 Identities=10% Similarity=0.190 Sum_probs=46.2
Q ss_pred HHhhCCCcccEEEEccCCCCCC--Cccee--eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 22 IRDKYPDRIPVIVERAEKSDVP--EIDKK--KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 22 ir~kyP~kIpVIvEr~~~~~lp--~l~k~--KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
..+.+|.-|-|.|.-.....-+ .|+.+ .+-|+.+.||+++...|....++.+++--.+| ++.....+.+++
T Consensus 18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~-~Gk~L~D~~tL~ 92 (115)
T 1we7_A 18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY-EGIFIKDSNSLA 92 (115)
T ss_dssp HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE-TTEEECTTSBHH
T ss_pred HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE-CCEECCCCCCHH
Confidence 5567899899988543211100 13333 35589999999999999999999876554444 554445555554
No 31
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=83.39 E-value=1.9 Score=26.78 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=40.2
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
.-.|-|.|.. .+... .+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++.
T Consensus 26 ~m~i~I~Vk~-~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKW------EVNVAPESTVLQFKEAINKANGIPVANQRLIY-SGKILKDDQTVESY 86 (101)
T ss_dssp ---CCEEEEC-SSCCC------CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE-TTEECCTTSBTTTT
T ss_pred CcEEEEEEEE-CCEEE------EEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE-CCEECCCcCcHHHC
Confidence 3446677753 22222 24578999999999999999999876544333 66666777777663
No 32
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=83.24 E-value=2.8 Score=25.57 Aligned_cols=62 Identities=10% Similarity=0.192 Sum_probs=41.1
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
...+-|.|.-. ++. ...+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++.
T Consensus 20 ~~~m~I~Vk~~-~g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~ 81 (98)
T 4hcn_B 20 GRPMQIFVKTL-TGK-----TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY 81 (98)
T ss_dssp --CCEEEEEET-TCC-----EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTCBSGGG
T ss_pred CCeEEEEEEeC-CCC-----EEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHHC
Confidence 44566666432 121 234568999999999999999999987654433 466666677777653
No 33
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=82.78 E-value=3.1 Score=24.81 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=33.4
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|..+.+++++.--.+ .++.....+.++++
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~ 67 (88)
T 1sif_A 23 TVEMEPSDTIENLKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSD 67 (88)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTSBSGG
T ss_pred EEEECCCChHHHHHHHHHHHHCcChhhEEEE-ECCEECCCCCcHHH
Confidence 3458999999999999999999987654433 46655556677765
No 34
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.68 E-value=3 Score=24.38 Aligned_cols=61 Identities=10% Similarity=0.153 Sum_probs=40.7
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
|..+-|.|.... + +...+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus 5 ~~~m~i~Vk~~~-g-----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~Gk~L~d~~tL~~ 65 (87)
T 1wh3_A 5 SSGIQVFVKNPD-G-----GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF-QGQVLQDWLGLGI 65 (87)
T ss_dssp SSSEEEEEEETT-T-----EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE-TTEECCSSSBHHH
T ss_pred CCCEEEEEEcCC-C-----CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE-CCEEccCCCCHHH
Confidence 455666664321 1 12245689999999999999999999877654444 5655556666653
No 35
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=82.33 E-value=2.3 Score=24.53 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=34.5
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
..+-|..+.||+++...|..+.++++++--++| ++.....+.++++
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~~ 61 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKE 61 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHHH
Confidence 356699999999999999999999988666655 4544455556543
No 36
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=82.31 E-value=2.1 Score=26.70 Aligned_cols=46 Identities=7% Similarity=-0.017 Sum_probs=34.3
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
.+-|+.+.||+++...|..+.++.+++--.+ .++.....+.++++.
T Consensus 15 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~ 60 (106)
T 3m62_B 15 PLDLEPSNTILETKTKLAQSISCEESQIKLI-YSGKVLQDSKTVSEC 60 (106)
T ss_dssp EECCCTTSBHHHHHHHHHHTTTSCGGGCEEE-ETTEECCTTSBTTTT
T ss_pred EEEECCCCcHHHHHHHHHHHHCCChhhEEEE-ECCEECCCcCCHHHc
Confidence 3458899999999999999999887654433 466666667777653
No 37
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=81.68 E-value=5.5 Score=24.81 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=34.7
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
.+-|+.+.||+++...|.++.++.+++--.+| ++.....+.++++.
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~~ 94 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSDY 94 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE-TTEECCSSCBTTTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE-CCEECCCCCcHHHc
Confidence 45689999999999999999999877554444 66555667777653
No 38
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=79.96 E-value=5.3 Score=24.98 Aligned_cols=46 Identities=11% Similarity=0.201 Sum_probs=35.0
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
.+-|+.+.||+++...|.++.++++++--.+ .++.....+.++++.
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~ 94 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY 94 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTTTT
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHHEEEE-ECCEECCCCCcHHHC
Confidence 4568999999999999999999987654444 466666667777653
No 39
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=79.74 E-value=2 Score=25.68 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=33.4
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk~L~D~~tL~~ 62 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EGKPLEDQLPLGE 62 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEEEES-SSSCCCTTSBHHH
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEEE-CCEECCCCCcHHH
Confidence 45689999999999999999999887655554 5544455666653
No 40
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=79.26 E-value=4.2 Score=25.04 Aligned_cols=60 Identities=23% Similarity=0.422 Sum_probs=42.5
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+..+-|.|.-. +. ...+-|+.+.||+++...|....++++++--.+| ++.....+.++++
T Consensus 23 ~~~m~I~Vk~~--g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~ 82 (101)
T 2klc_A 23 PKIMKVTVKTP--KE-----KEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF-AGKILKDQDTLSQ 82 (101)
T ss_dssp CCCEEEEEECS--SC-----EEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE-TTEEECTTCCTGG
T ss_pred CCeEEEEEEeC--Cc-----EEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE-CCEECCCcCcHHH
Confidence 56788888543 21 2356689999999999999999999876544444 5555556667665
No 41
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.85 E-value=6.1 Score=25.46 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=34.4
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
.+-|+.+.||+++...|..+.++.+++--.+| ++.....+.++++.
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~dy 90 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQLVLIF-AGKILKDQDTLIQH 90 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE-TTEEESTTSCGGGT
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceEEEEE-CCEEcCCCCCHHHc
Confidence 45689999999999999999999876544444 55555666777653
No 42
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=77.23 E-value=2.5 Score=26.09 Aligned_cols=60 Identities=23% Similarity=0.353 Sum_probs=40.5
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
++.+-|.|.-. .+ +..+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++
T Consensus 20 ~~~m~I~Vk~~-~g------~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~ 79 (100)
T 1yqb_A 20 PHLIKVTVKTP-KD------KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FAGKILKDPDSLAQ 79 (100)
T ss_dssp TTEEEEEEECS-SC------EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBHHH
T ss_pred CCeEEEEEEcC-CC------cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECCEECCCcCcHHH
Confidence 45566767432 22 234568999999999999999999987654444 46655556666653
No 43
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=76.83 E-value=2.1 Score=25.64 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=33.1
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCcc-CCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL-PPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~l-p~~~~~m~~ 94 (96)
..-|+.+.||+++...|....++++++--.+| ++.. ...+.++++
T Consensus 24 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~lL~D~~tL~~ 69 (84)
T 2kk8_A 24 ELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV-DGIVILREDLTVEQ 69 (84)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCCSSSBHHH
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHEEEEE-CCEEecCCcCCHHH
Confidence 34589999999999999999999876544444 5554 566666653
No 44
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=76.68 E-value=4.3 Score=26.47 Aligned_cols=46 Identities=9% Similarity=0.161 Sum_probs=34.6
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEE-EEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFI-FVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl-~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|....++++++.-.+ |-++.....+.++++
T Consensus 16 ~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~ 62 (159)
T 3rt3_B 16 QVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLAS 62 (159)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGG
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHH
Confidence 3458899999999999999999998655555 525555566667665
No 45
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=75.39 E-value=4.6 Score=24.58 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=41.8
Q ss_pred CCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 26 YPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 26 yP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
-++.+-|.|.- ..+. ...+-|..+.||+++...|..+.++++++--++| ++.....+.++++
T Consensus 18 ~~~~m~I~Vk~-~~g~-----~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~d 79 (97)
T 1wyw_B 18 EGEYIKLKVIG-QDSS-----EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKE 79 (97)
T ss_dssp -CCEEEEEEEC-TTCC-----EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHH
T ss_pred CCCcEEEEEEe-CCCC-----EEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHH
Confidence 35567777743 2221 2356699999999999999999999988666665 4444445555543
No 46
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=75.25 E-value=9.5 Score=21.94 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=36.9
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
...|-|.++-+++.++....++.++++++--|+|-+..+. .+.|.+++
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l 60 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQL 60 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHc
Confidence 3468899999999999999999999998777777555653 34555543
No 47
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=74.77 E-value=5.1 Score=25.28 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=33.0
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~ 67 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQQRLI-WAGKQLEDGRTLSD 67 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTCBTTT
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECCEECCCCCcHHH
Confidence 458889999999999999999987654444 45555556667765
No 48
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=74.72 E-value=3.9 Score=25.25 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=33.1
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|..+.++.+++--. +.++.....+.++++
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-i~~Gk~L~D~~tL~~ 74 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQLVL-IFAGKILKDPDSLAQ 74 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTTEEE-EETTEECCTTSCHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEE-EECCEECCCcCcHHH
Confidence 456899999999999999999988765443 346655555666653
No 49
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=74.31 E-value=2.7 Score=26.05 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=25.6
Q ss_pred EecCCCchHhHHHHHhhhhcCCCCCeEEEEE
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPEKAIFIFV 81 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~~alfl~V 81 (96)
-||.+++++++..-|++||++.+++...-|=
T Consensus 19 rvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk 49 (83)
T 1oey_A 19 KTQPGLPYSQVRDMVSKKLELRLEHTKLSYR 49 (83)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcceeEEEee
Confidence 4899999999999999999997665544443
No 50
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=73.64 E-value=4.1 Score=25.79 Aligned_cols=46 Identities=7% Similarity=0.045 Sum_probs=34.8
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
...=|+.+.||+++...|..+.++++++--.+ .++.+...+.|+++
T Consensus 32 ~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI-~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 32 NLLETRLHITGRELRSKIAETFGLQENYIKIV-INKKQLQLGKTLEE 77 (100)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE-ETTEECCTTSBHHH
T ss_pred EEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE-eCCeECCCCCcHHH
Confidence 34458999999999999999999987765555 45666666666653
No 51
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=73.55 E-value=5.1 Score=24.18 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=38.9
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+..+-|.|.. + +...+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 17 ~~~m~I~Vk~---g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~ 75 (93)
T 2l7r_A 17 RGSMQLFVRA---Q-----ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL-AGAPLEDEATLGQ 75 (93)
T ss_dssp ---CEEEEES---S-----SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE-TTEECCTTSBHHH
T ss_pred CCcEEEEEEC---C-----CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE-CCEECCCCCcHHH
Confidence 4456677753 1 23346689999999999999999999876544444 5555556666653
No 52
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=73.06 E-value=5.2 Score=25.44 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=33.4
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~-~g~~L~d~~tL~~ 58 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 58 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTGG
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeEEEE-CCeECcCcccHHH
Confidence 45689999999999999999999877554444 5544455666654
No 53
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.64 E-value=7.7 Score=23.34 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=30.9
Q ss_pred eEEecCCCchHhHHHHHhhh---hcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKR---IKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~---l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|... -++++++--.+ .++.....+.++++
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi-~~Gk~L~D~~tL~~ 61 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI-YAGKILNDDTALKE 61 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE-ETTEECCTTSBGGG
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE-ECCEECCCcCcHHH
Confidence 35588999999999999988 45665544333 35555555666654
No 54
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=72.22 E-value=14 Score=22.54 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=36.7
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
...|-|.++-+++.++....++.++++++--|+|-+..+ ..+.|.+++
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl 64 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 64 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 347889999999999999999999999777777755555 334555543
No 55
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=71.78 E-value=10 Score=24.02 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=34.2
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
..+-|+.+.||+++...|.++.++++++--++| ++.....+.++++
T Consensus 89 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~-~g~~L~d~~tL~~ 134 (152)
T 3b08_A 89 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 134 (152)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTGG
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE-CCEECCCCCCHHH
Confidence 345688999999999999999999877555444 5655556667665
No 56
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=71.67 E-value=12 Score=21.49 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=39.5
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhh---hcCCCCCeEEEEEcCccCCCCccccc
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKR---IKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~---l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
|..+-|.|.-.. +. ...+-|+.+.||+++...|..+ -++.+++--.+ .++.....+.++++
T Consensus 3 ~~~m~i~vk~~~-g~-----~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi-~~Gk~L~D~~tL~~ 66 (85)
T 2wyq_A 3 PMAVTITLKTLQ-QQ-----TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-YAGKILSDDVPIRD 66 (85)
T ss_dssp -CCEEEEEEETT-SC-----EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE-ETTEECCTTSBGGG
T ss_pred CceEEEEEEECC-CC-----EEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE-ECCEECcCCCCHHH
Confidence 556677774432 22 2245689999999999999998 45765544333 46656566777765
No 57
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=71.61 E-value=6.7 Score=24.21 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=33.0
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|..+.++.+++--.+| ++.....+.++++
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~ 81 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF-SGRPLTDKMKFEE 81 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE-TTEECCTTSHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE-CCEECCCCCcHHH
Confidence 45699999999999999999999876554444 5555555666553
No 58
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=71.20 E-value=7.2 Score=25.85 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=33.6
Q ss_pred CCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEc
Q 034364 42 VPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (96)
Q Consensus 42 lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vn 82 (96)
+|+..-+...|....+|++.+..|-+++++...+- |-+|.
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 66777888999999999999999999999986544 65554
No 59
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=70.08 E-value=5.8 Score=23.74 Aligned_cols=45 Identities=11% Similarity=0.300 Sum_probs=32.8
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|..+.++.+++--.+| ++.....+.++++
T Consensus 30 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk~L~D~~tL~~ 74 (96)
T 1wx8_A 30 EFFLAENSNVRRFKKQISKYLHCNADRLVLIF-TGKILRDQDILSQ 74 (96)
T ss_dssp EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE-TTEECCTTSCHHH
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCEECCCcCCHHH
Confidence 45689999999999999999999876544444 5544455556543
No 60
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=69.92 E-value=7.1 Score=23.70 Aligned_cols=42 Identities=7% Similarity=0.019 Sum_probs=30.5
Q ss_pred ecCCCchHhHHHHH-hhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 52 VPADLTVGQFVYVV-RKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 52 Vp~~~tv~~f~~~i-rk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
|+.+.||+++..-| ..+-++++++--.+| ++.....+.++++
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~~QrLi~-~Gk~L~D~~tL~~ 62 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHISEIKLLL-KGKVLHDNLFLSD 62 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSSTTEEEEE-TTEECCTTCBHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChHHEEEEE-CCEECcCcCCHHH
Confidence 34899999999999 777788877655454 5556566666654
No 61
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=68.70 E-value=8.9 Score=24.45 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=35.2
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
-.+-|..+.||+++..-|-.+.+++++.-= ++.++.+...+.++++
T Consensus 39 i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 39 IWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 445689999999999999999999987554 4446677666666654
No 62
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=71.55 E-value=1 Score=25.76 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=31.3
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+-|+.+.||+++...|.+..++++++--.+| ++.....+.++++
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~gk~L~d~~tL~~ 58 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVIF-AGKELPNHLTVQN 58 (76)
Confidence 4478899999999999999888876544444 4444445566654
No 63
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=68.21 E-value=8.4 Score=23.22 Aligned_cols=44 Identities=9% Similarity=0.002 Sum_probs=31.1
Q ss_pred EecCCCchHhHHHHHhhhhcCCCCCeEEEEEc------CccCCCCccccc
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK------NILPPTGMKMAS 94 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~~alfl~Vn------n~lp~~~~~m~~ 94 (96)
=++.+.||+++..-|..+-++++++---+|.+ +.+...+.++++
T Consensus 20 r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~ 69 (86)
T 4b6w_A 20 RYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGY 69 (86)
T ss_dssp EEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGG
T ss_pred EcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHH
Confidence 37999999999999999999987654444432 234455556553
No 64
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=67.88 E-value=7.6 Score=24.13 Aligned_cols=43 Identities=7% Similarity=0.034 Sum_probs=31.3
Q ss_pred ecCCCchHhHHHHH-hhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 52 VPADLTVGQFVYVV-RKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 52 Vp~~~tv~~f~~~i-rk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
|+.+.||+++...| ...-++++++--.+| ++.....+.++++.
T Consensus 38 v~~~~TV~~lK~~I~~~~~gip~~~QrLi~-~Gk~L~D~~tL~dy 81 (98)
T 4a20_A 38 FSPSDTILQIKQHLISEEKASHISEIKLLL-KGKVLHDNLFLSDL 81 (98)
T ss_dssp ECTTCBHHHHHHHHHHTTSCSCGGGEEEEE-TTEEECTTCBGGGS
T ss_pred cCCCChHHHHHHHHHHHhcCCChhhEEEEE-CCEECcCcCCHHHc
Confidence 56999999999999 777788776654444 56666667777654
No 65
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=67.48 E-value=14 Score=23.97 Aligned_cols=45 Identities=11% Similarity=0.032 Sum_probs=34.4
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G~~L~d~~tL~~ 139 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGE 139 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGG
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE-ECCeecCCCCCHHH
Confidence 4568999999999999999999987765444 46666566777765
No 66
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=65.63 E-value=7.5 Score=23.19 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=30.2
Q ss_pred ecCCCchHhHHHHHhhhh--cCCCCCeEEEEEcCccCCCCccccc
Q 034364 52 VPADLTVGQFVYVVRKRI--KLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 52 Vp~~~tv~~f~~~irk~l--~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
|+.+.||+++...|.... ++.+++-=.+| ++.....+.++++
T Consensus 26 v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~-~Gk~L~D~~tL~~ 69 (93)
T 1wgd_A 26 GDRGWSVGHLKAHLSRVYPERPRPEDQRLIY-SGKLLLDHQCLRD 69 (93)
T ss_dssp CCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE-TTEECCSSSCHHH
T ss_pred cCCCCcHHHHHHHHHHHhcCCCChHHeEEEE-CCEECcCcCCHHH
Confidence 559999999999999988 88766544333 5555556666653
No 67
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=65.48 E-value=12 Score=22.62 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=25.9
Q ss_pred EecCCCchHhHHHHHhhhhcCCCC-CeEEEEE
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPE-KAIFIFV 81 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~-~alfl~V 81 (96)
-+|.++||+++...|.+..++++. +.|+++-
T Consensus 28 ~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 28 QLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 489999999999999999999765 6666653
No 68
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=64.98 E-value=13 Score=22.93 Aligned_cols=39 Identities=3% Similarity=0.068 Sum_probs=27.9
Q ss_pred CCchHhHHHHHhhhh--cCCCCC-eEEEEEcCccCCCCccccc
Q 034364 55 DLTVGQFVYVVRKRI--KLSPEK-AIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 55 ~~tv~~f~~~irk~l--~l~~~~-alfl~Vnn~lp~~~~~m~~ 94 (96)
+.||+++...|..+. ++.+++ --.+| ++.....+.++++
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~-~Gk~L~D~~tL~~ 85 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIY-CGRKLKDDQTLDF 85 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEE-TTEECCTTCBHHH
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEE-CCeECCCCCcHHH
Confidence 599999999999999 888776 43344 4544455566543
No 69
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=64.79 E-value=15 Score=22.79 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=24.0
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEE
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIF 80 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~ 80 (96)
-.||.+++..|+..-|+.||.++ +.-+|.|
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~-~~~l~~y 55 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD-NFKLQTK 55 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS-CEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHhccc-ceEEEEe
Confidence 45999999999999999999994 3344443
No 70
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=64.76 E-value=6.2 Score=23.97 Aligned_cols=61 Identities=11% Similarity=0.032 Sum_probs=40.1
Q ss_pred CCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCC-ccccc
Q 034364 26 YPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTG-MKMAS 94 (96)
Q Consensus 26 yP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~-~~m~~ 94 (96)
++..+-|.|.-. ++ ....-|+.+.||+++...|....++++++--.+| ++.....+ .++++
T Consensus 12 ~~~~~~I~Vk~~-~~------~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~~tL~~ 73 (94)
T 2kan_A 12 AVRKIHVTVKFP-SK------QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY-SGIELADDYRNLNE 73 (94)
T ss_dssp SSCCEEEEEECS-SC------EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE-TTEEECCTTSBHHH
T ss_pred CCCCEEEEEEcC-Cc------EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE-CCEECCCCcccHHH
Confidence 355567777432 11 2345689999999999999999999876544444 55444455 56543
No 71
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=64.55 E-value=7.1 Score=23.37 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=30.5
Q ss_pred EecCCCchHhHHHHHhhhhcCCCCCeEEEE--EcCccCCCCcccc
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPEKAIFIF--VKNILPPTGMKMA 93 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~~alfl~--Vnn~lp~~~~~m~ 93 (96)
-|+.+.||++|...|..+-++.+++--.+. .++.....+.+++
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~ 67 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 67 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHH
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHH
Confidence 478999999999999999999876544330 3555545555554
No 72
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.71 E-value=4.3 Score=24.97 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=29.8
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCC-cccc
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTG-MKMA 93 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~-~~m~ 93 (96)
.=|+.+.||++|...|....++.+++--.+| ++.....+ .+++
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~gk~L~D~~~tL~ 69 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQIVY-MEQLLTDDHCSLG 69 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBCEEE-TTEEECCSSSBHH
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeEEEE-CCEECCCCcccHH
Confidence 4589999999999999999998866544333 44443333 3454
No 73
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=63.68 E-value=14 Score=22.68 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=36.6
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
...|-|.++-+++.++..+.++.++++++--|+|-+..+- .+.|.+++
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl 66 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQL 66 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTT
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHc
Confidence 3468899999999999999999999998777777655553 34455443
No 74
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.61 E-value=9.2 Score=23.32 Aligned_cols=43 Identities=12% Similarity=0.007 Sum_probs=31.4
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+-|+.+.||++|...|...-++.+++--.+ .++.....+ ++++
T Consensus 22 l~v~~~~TV~~lK~~I~~~tgip~~~QkLi-~~Gk~L~D~-tL~~ 64 (96)
T 1wgg_A 22 VELNTDEPPMVFKAQLFALTGVQPARQKVM-VKGGTLKDD-DWGN 64 (96)
T ss_dssp EEEESSSCHHHHHHHHHHHTCCCTTTSCCE-ETTEECCSS-CCCS
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCcCCCCC-CHHH
Confidence 458999999999999999999986643333 366555555 6654
No 75
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=62.69 E-value=13 Score=25.05 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=34.5
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|..+.++++++.-.+| ++.....+.++++
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~ 58 (169)
T 3l0w_B 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 58 (169)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE-TTEECCTTSBGGG
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE-CCccccCcCcHHH
Confidence 35588999999999999999999887654444 5555566777765
No 76
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=62.57 E-value=18 Score=23.86 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=34.3
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|..+.++.+++.-.+ .++.....+.++++
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~-~~g~~L~d~~tL~~ 78 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSD 78 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTCBTGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECCccccccCCHhH
Confidence 4558999999999999999999988655444 45655666777765
No 77
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=61.84 E-value=20 Score=21.73 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=42.7
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
+++|-|.|.- ..+ ....|-|.++-+++.++....++.++++++--|+|=+..+ ..+.|.+++
T Consensus 15 ~~~i~ikV~~-~~g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~dl 76 (93)
T 2d07_B 15 NDHINLKVAG-QDG-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 76 (93)
T ss_dssp CCEEEEEEEC-TTS-----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEEC-CCC-----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEc-CCCCCHHHc
Confidence 4566666632 212 2346889999999999999999999998866666655555 334455443
No 78
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=61.40 E-value=22 Score=22.41 Aligned_cols=48 Identities=6% Similarity=0.075 Sum_probs=36.5
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
...|-|.++-++.-++....++.++++++--|+|-+..+. .+.|.+++
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~-~~~Tp~dl 89 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDL 89 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcC-CCCCHHHc
Confidence 3467899999999999999999999998777777555553 34455443
No 79
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=61.19 E-value=5 Score=25.00 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=23.6
Q ss_pred EEec-CCCchHhHHHHHhhhhcCCCC-CeEE
Q 034364 50 YLVP-ADLTVGQFVYVVRKRIKLSPE-KAIF 78 (96)
Q Consensus 50 flVp-~~~tv~~f~~~irk~l~l~~~-~alf 78 (96)
.-|+ .+.||+++...|..+.+++++ +.|+
T Consensus 21 v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~ 51 (107)
T 1wf9_A 21 VSVDGPHITVSQLKTLIQDQLQIPIHNQTLS 51 (107)
T ss_dssp EEECCTTSBHHHHHHHHHHHSCCCTTTCCCB
T ss_pred EEECCCCCcHHHHHHHHHHHhCcCcccCEEE
Confidence 4478 899999999999999998755 4444
No 80
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=60.00 E-value=9.6 Score=24.06 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=33.2
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
.+-|+.+.||+++...|..+-++++++--.+| +++....+.+++
T Consensus 42 ~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~-~Gk~L~D~~TL~ 85 (100)
T 1uh6_A 42 RVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK-WYTIFKDHVSLG 85 (100)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE-TTEECCSSCBHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE-CCEECCCCCCHH
Confidence 45689999999999999999999877654444 455556566665
No 81
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=59.98 E-value=14 Score=22.63 Aligned_cols=51 Identities=20% Similarity=0.079 Sum_probs=34.9
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEE
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV 81 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~V 81 (96)
++.|.|.|.-+. +.- .....-|+.+.||+++..-|..+.++++++---+|.
T Consensus 13 ~~~v~l~It~s~-~~~---~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 13 SDFIKVNVSNSH-NDA---VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp CCEEEEEEEESS-CSC---EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred CCeEEEEEEECC-CCc---eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 566778774321 111 123456999999999999999999998765444444
No 82
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=59.70 E-value=16 Score=23.84 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=33.5
Q ss_pred ecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 52 VPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 52 Vp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
|..+.||.++...|..+.++.+++.-.+| ++.+...+.|+++
T Consensus 18 ve~sdTV~~lK~kI~~~~giPp~qQrLI~-~Gk~LeD~kTL~d 59 (118)
T 4ajy_B 18 AKESSTVFELKRIVEGILKRPPDEQRLYK-DDQLLDDGKTLGE 59 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTTT
T ss_pred cCCCChHHHHHHHHHHHHCCCHHHeEEEe-CCeECCCcCCHHH
Confidence 88999999999999999999987655444 5566677777765
No 83
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=59.33 E-value=7.5 Score=22.25 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=18.3
Q ss_pred HHHhhhhcCCCCCeEEEEEcC
Q 034364 63 YVVRKRIKLSPEKAIFIFVKN 83 (96)
Q Consensus 63 ~~irk~l~l~~~~alfl~Vnn 83 (96)
.-+|++|++.+++.+.+++.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 458999999999999998875
No 84
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=58.58 E-value=2 Score=27.63 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+-|+.+.||+++...|....++++++--.+| ++.....+.++++
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~ 58 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 58 (128)
T ss_dssp ---------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEEE-CCEECCCCCchhh
Confidence 4588899999999999999998876544443 5555555666654
No 85
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.25 E-value=31 Score=21.53 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=36.4
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
...|-|.++-++..++....++.++++++--|+|-+..+- .+.|.++
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~-~~~Tp~d 82 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQ 82 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCC-TTSCTTT
T ss_pred EEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHH
Confidence 3468899999999999999999999988777777665653 3344444
No 86
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=57.69 E-value=11 Score=24.54 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=32.9
Q ss_pred EecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
=|..+.||+++...|..+.++.+++--.+ .++.....+.++++
T Consensus 17 ev~~sdTV~~lK~kI~~~egIP~~qQrLi-~~Gk~LeD~~TLsd 59 (118)
T 2fnj_B 17 DAKESSTVFELKRIVEGILKRPPEEQRLY-KDDQLLDDGKTLGE 59 (118)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBHHH
T ss_pred EeCCcChHHHHHHHHHHHhCCCHHHeEEE-ECCeECCCCCCHHH
Confidence 38999999999999999999987654433 46666666666653
No 87
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=57.20 E-value=12 Score=22.00 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=28.2
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGM 90 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~ 90 (96)
..-+|...|++++. +.|++++++.+ +.+|+...+.|.
T Consensus 14 ~~ev~~g~Tv~dLL----~~Lgl~~~~Vv-V~vNG~~v~~d~ 50 (74)
T 2l32_A 14 EVAVDDDGTYADLV----RAVDLSPHEVT-VLVDGRPVPEDQ 50 (74)
T ss_dssp EEECSTTCSHHHHH----HTTCCCSSCCC-EECCCCCCCTTS
T ss_pred eEEcCCCCcHHHHH----HHcCCCcceEE-EEECCEECCHHH
Confidence 35689999999965 57799999885 789986644443
No 88
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=56.93 E-value=8.8 Score=23.83 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=36.7
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhh--cCC-CCCeEEEEEcCccCCCCccccc
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRI--KLS-PEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l--~l~-~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+..|.|.| +.+++... ...+-|+.+.||+++...|..++ ... .++.| +.++.....+.++++
T Consensus 21 ~~~m~I~V-K~~~g~~~---~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrL--Iy~Gk~L~D~~tL~~ 85 (99)
T 2kdb_A 21 GHPVTLII-KAPNQKYS---DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRL--VYSGRLLPDHLQLKD 85 (99)
T ss_dssp --CEEEEE-ECTTSSSC---CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCE--EETTEEECTTSBTHH
T ss_pred CCeEEEEE-EcCCCCEE---EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEE--EECCEECCCCCCHHH
Confidence 45577777 33322211 11345799999999999999876 333 33443 335666566677764
No 89
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=56.75 E-value=11 Score=22.40 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=29.2
Q ss_pred eEEecCC-----CchHhHHHHHhhhhcCCCCCeEEEEEcCccCCC-Ccccc
Q 034364 49 KYLVPAD-----LTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPT-GMKMA 93 (96)
Q Consensus 49 KflVp~~-----~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~-~~~m~ 93 (96)
.+-|+.+ .||++|...|....++.+++--.+| ++..... +.+++
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~-~Gk~L~D~~~~L~ 69 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF-KGKSLKEMETPLS 69 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE-TTEEECCSSSBHH
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE-CCeecCCCcccHH
Confidence 3457774 9999999999999998866444344 4443332 44554
No 90
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=55.95 E-value=26 Score=19.96 Aligned_cols=40 Identities=5% Similarity=-0.034 Sum_probs=27.1
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
.+-+|...|++++...+ ++++.. +-+.||+.+.+.+..+.
T Consensus 17 ~~~~~~~~tv~~Ll~~l----~~~~~~-v~vavN~~~v~~~~~L~ 56 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGEL----EIPIET-VVVKKNGQIVIDEEEIF 56 (70)
T ss_dssp EEEESSCCBHHHHHHHT----TCCTTT-EEEEETTEECCTTSBCC
T ss_pred eEECCCCCcHHHHHHHh----CCCCCC-EEEEECCEECCCcccCC
Confidence 36678889999977654 566544 45889997755555543
No 91
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=55.84 E-value=10 Score=20.82 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=18.2
Q ss_pred HHHhhhhcCCCCCeEEEEEcC
Q 034364 63 YVVRKRIKLSPEKAIFIFVKN 83 (96)
Q Consensus 63 ~~irk~l~l~~~~alfl~Vnn 83 (96)
.-+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 458999999999999988875
No 92
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=55.30 E-value=21 Score=24.80 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=34.1
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|....++++++.-.+ .++.....+.++++
T Consensus 119 ~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi-~~Gk~L~D~~tL~d 163 (189)
T 3q3f_A 119 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSD 163 (189)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETTEECCTTCBGGG
T ss_pred EEEeCCCCcHHHHHHHHHhccCCCHHHEEEE-ECCEECCCCCCHHH
Confidence 3558999999999999999999987654333 46666666777765
No 93
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=53.75 E-value=22 Score=21.92 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=35.4
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEc
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vn 82 (96)
.+-|+|.|.-+. ..- .....=|+.+.||+++..-|..+-++++++.--+|.+
T Consensus 12 ~~~v~l~It~s~-~~~---~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 12 DDSVHLHITHAN-LKS---FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp CCCEEEEEEETT-SSC---CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEEC
T ss_pred CceEEEEEEECC-CCc---eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 455777774421 111 1234469999999999999999999987755444444
No 94
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.23 E-value=16 Score=21.64 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=28.0
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCC-ccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTG-MKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~-~~m~~ 94 (96)
.+-|+.+.||+++...|..+. ...+.|+ .++.....+ .++++
T Consensus 21 ~~~v~~~~TV~~LK~~i~~~~--~~~qrLi--~~Gk~L~D~~~tL~~ 63 (95)
T 1wia_A 21 LAVARPEDTVGTLKSKYFPGQ--ESQMKLI--YQGRLLQDPARTLSS 63 (95)
T ss_dssp EEEECSSSBHHHHHHHHSSST--TTTCEEE--ETTEECCCSSCBTTT
T ss_pred EEEECCCCcHHHHHHHHHhhC--cCcEEEE--ECCEEccCCcCCHHH
Confidence 455899999999999888765 3344443 355555555 66664
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=52.15 E-value=26 Score=20.44 Aligned_cols=45 Identities=18% Similarity=0.109 Sum_probs=34.8
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
..|-|.++-+++.++....++.++++++--|+|-+..+- .+.|.+
T Consensus 21 i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~ 65 (79)
T 3a4r_A 21 LEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLS-GKELPA 65 (79)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECC-SCCCHH
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHH
Confidence 467899999999999999999999998767777555553 334443
No 96
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.62 E-value=11 Score=23.63 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=30.4
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEEE-cCccCCCCccccc
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV-KNILPPTGMKMAS 94 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~V-nn~lp~~~~~m~~ 94 (96)
.-|+.+.||++|...|..+-++.+++.-.++. .+. ...+.++++
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~ 67 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKS 67 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHH
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHH
Confidence 34889999999999999999998775544432 234 344445543
No 97
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=51.43 E-value=3.1 Score=28.02 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+-|+.+.||+++...|....++++++.-.+| ++.....+.++++
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~d 58 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 58 (152)
T ss_dssp ---------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCEEccccCcHHH
Confidence 3488899999999999999998876554444 5555556666665
No 98
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=51.05 E-value=23 Score=20.73 Aligned_cols=44 Identities=5% Similarity=0.120 Sum_probs=29.0
Q ss_pred ecCCCchHhHHHHHhhhhcCCCCCeEEEEEc--CccC-C-CCcccccC
Q 034364 52 VPADLTVGQFVYVVRKRIKLSPEKAIFIFVK--NILP-P-TGMKMASF 95 (96)
Q Consensus 52 Vp~~~tv~~f~~~irk~l~l~~~~alfl~Vn--n~lp-~-~~~~m~~l 95 (96)
|+.+.||+++...|..+.++.++.--++|-. ..+. . .+.+++++
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~ 64 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDL 64 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHc
Confidence 6789999999999999999875443333322 2231 2 45666654
No 99
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.37 E-value=6 Score=24.05 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=29.6
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
.+-|+.+.||++|...|....++.+++--.+| ++... .+.+++
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~-~Gk~L-dd~tL~ 72 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVP-EDKTLR 72 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS-SSBCC-SSSBHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-CCeeC-CcCcHH
Confidence 35689999999999999999998866433333 44333 344544
No 100
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=48.18 E-value=31 Score=21.28 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=29.1
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEE-EEc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFI-FVK 82 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl-~Vn 82 (96)
.-+-||.+++..++..-+|.+.++.+.+.+-+ |++
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 36779999999999999999999988777655 444
No 101
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=47.81 E-value=35 Score=22.35 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=33.6
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|..+.++++++.-.+| ++.....+.++++
T Consensus 110 ~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~-~g~~L~D~~tL~~ 154 (172)
T 3u30_A 110 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD 154 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-TTEECCTTSBSGG
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCceeEEEEE-CCccCCCCCcHHH
Confidence 44588999999999999999999876544443 5655566667765
No 102
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.81 E-value=5.4 Score=25.32 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=30.8
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCC--------------CeEEEEEcCccC-CCCccccc
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPE--------------KAIFIFVKNILP-PTGMKMAS 94 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~--------------~alfl~Vnn~lp-~~~~~m~~ 94 (96)
.-|+.+.||+++...|..+.++.++ ..+-|..++... ..+.++++
T Consensus 22 v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d 81 (105)
T 1v2y_A 22 VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD 81 (105)
T ss_dssp EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH
T ss_pred EEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH
Confidence 3488999999999999999887652 234454565443 34466653
No 103
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=45.20 E-value=35 Score=18.93 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=29.2
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccc
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKM 92 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m 92 (96)
...+-+|...|+.++...+...+ +..++-..||+.+-+.+..+
T Consensus 10 g~~~~~~~g~T~~dla~~i~~~l---~~~~vaa~vNg~lvdl~~~L 52 (73)
T 2kmm_A 10 GEIKRLPQGATALDFAYSLHSDL---GDHCIGAKVNHKLVPLSYVL 52 (73)
T ss_dssp CCEEEECTTCBHHHHHHHHCSHH---HHTEEEEEETTEECCTTCBC
T ss_pred CCEEEcCCCCcHHHHHHHHhhcc---ccceEEEEECCEEeCCCcCc
Confidence 34567899999999988764443 23466677899775544444
No 104
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=45.08 E-value=27 Score=22.59 Aligned_cols=48 Identities=6% Similarity=0.117 Sum_probs=32.6
Q ss_pred eeeEEecCCCchHhHHHHHhhh------hcCC-CCCeEEEEEcCccCCCCccccc
Q 034364 47 KKKYLVPADLTVGQFVYVVRKR------IKLS-PEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~------l~l~-~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
...+-|+.+.||+++...|... =++. +-+.+=|..++++...+.++++
T Consensus 29 ~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~ 83 (125)
T 2gow_A 29 TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGA 83 (125)
T ss_dssp EEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGG
T ss_pred EEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHH
Confidence 4567799999999999999873 3442 2344555556666666667664
No 105
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=44.95 E-value=33 Score=20.08 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=29.5
Q ss_pred eEEecCCCchHhHHHHHhhhhc------CCCC----CeEEEEEcCccCCCCcccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIK------LSPE----KAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~------l~~~----~alfl~Vnn~lp~~~~~m~ 93 (96)
.+-+|...||+++...|..+.. +..+ ..+-++||+.....+..+.
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~ 75 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATA 75 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCC
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccC
Confidence 3457788999999999876652 2221 2367889996644455553
No 106
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.82 E-value=57 Score=20.76 Aligned_cols=48 Identities=6% Similarity=0.123 Sum_probs=32.2
Q ss_pred eeeEEecCCCchHhHHHHHhhhh------cCC-CCCeEEEEEcCccCCCCccccc
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRI------KLS-PEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l------~l~-~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
...+-|..+.||+++...|.... ++. +-+.+=|...+.+...+.++++
T Consensus 28 t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~ 82 (116)
T 1wgh_A 28 TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGA 82 (116)
T ss_dssp EEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTT
T ss_pred EEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHH
Confidence 45677999999999999999843 332 2334445556666666667664
No 107
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.59 E-value=28 Score=20.81 Aligned_cols=44 Identities=9% Similarity=0.032 Sum_probs=29.9
Q ss_pred EecCCCchHhHHHHHhhh-hcCCCCCeEEEEEc-CccCCCCccccc
Q 034364 51 LVPADLTVGQFVYVVRKR-IKLSPEKAIFIFVK-NILPPTGMKMAS 94 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~-l~l~~~~alfl~Vn-n~lp~~~~~m~~ 94 (96)
-|+.+.||+++...|.+. -++.+++.-.+|.. +.....+.++++
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~ 74 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQK 74 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTT
T ss_pred EcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHH
Confidence 489999999999999984 57766554444442 345555566654
No 108
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=41.73 E-value=37 Score=26.96 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=33.5
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCC--CCeEEE--EEcCc---cCCCCcccccC
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSP--EKAIFI--FVKNI---LPPTGMKMASF 95 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~--~~alfl--~Vnn~---lp~~~~~m~~l 95 (96)
.-.++||++-||+++..-++++.++++ ...|-+ ..|++ +.+.+.++++|
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence 567889999999999999999999974 333433 23443 24555555443
No 109
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=41.68 E-value=47 Score=19.96 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=29.4
Q ss_pred eEEecCCCchHhHHHHHhhhhc-CC---------CCCeEEEEEcCccCCCCcccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIK-LS---------PEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~-l~---------~~~alfl~Vnn~lp~~~~~m~ 93 (96)
.+-+|...||+++...|..+.. +. ....+-++||+...+.++.+.
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~ 84 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELK 84 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCC
T ss_pred EEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCC
Confidence 3456888999999998876531 11 124566889996644555553
No 110
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=41.41 E-value=47 Score=20.68 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=33.5
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCc
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNI 84 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~ 84 (96)
--++.|..+-|+..|...|-++-++.+++..+||-+..
T Consensus 25 ~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~ 62 (94)
T 4efo_A 25 AHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRR 62 (94)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEE
T ss_pred EEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCc
Confidence 35688999999999999999999999999999988843
No 111
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=41.40 E-value=65 Score=20.29 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=40.2
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCC
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPP 87 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~ 87 (96)
+++|-|.|.-. .+. ...|-|.++.+++.++....++.++++++--|+|-+..+-.
T Consensus 24 ~~~I~IkVk~~-~g~-----~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~ 78 (110)
T 2k8h_A 24 TALVAVKVVNA-DGA-----EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDE 78 (110)
T ss_dssp CCCEEEEEEET-TSC-----CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCS
T ss_pred CCeEEEEEECC-CCC-----EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCC
Confidence 45666666332 121 24688999999999999999999999987777776666643
No 112
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=41.20 E-value=40 Score=19.99 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=31.1
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKM 92 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m 92 (96)
..+.+|...|+.+|.+.|...++ ..++..-||+.+-+.+..+
T Consensus 16 ~~~~lp~GaT~~D~A~~Ih~~lg---~~~v~AkVNG~~v~L~~~L 57 (78)
T 3hvz_A 16 DVISLPIGSTVIDFAYAIHSAVG---NRMIGAKVDGRIVPIDYKV 57 (78)
T ss_dssp CEEEEETTCBHHHHHHHHCHHHH---HTEEEEEETTEEECTTCBC
T ss_pred CEEEecCCCCHHHHHHHhhhhhh---cceEEEEECCEEcCCCccc
Confidence 35689999999999998877764 3567788898664444433
No 113
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=40.52 E-value=42 Score=19.07 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=25.1
Q ss_pred cCCCchHhHHHHHhhhhc-----CCCCCeEEEEEcCccCCCCccc
Q 034364 53 PADLTVGQFVYVVRKRIK-----LSPEKAIFIFVKNILPPTGMKM 92 (96)
Q Consensus 53 p~~~tv~~f~~~irk~l~-----l~~~~alfl~Vnn~lp~~~~~m 92 (96)
+...|++++...+..+.. +.. ..+.++||+...+.+..+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~-~~~~v~vN~~~v~~~~~l 66 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALED-GKLLAAVNQTLVSFDHPL 66 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCC-TTCEEEETTEECCTTCBC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcC-CCEEEEECCEECCCCCCC
Confidence 567799999888765521 332 345788999664445544
No 114
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=40.19 E-value=72 Score=20.45 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=42.9
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.++|-|.|.- ..+. ...|-|-++.++.-++....++.+++..+--|+|=+..+-. +.|.++
T Consensus 38 ~~~I~LKV~~-qdg~-----ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~-~~TP~d 98 (115)
T 3kyd_D 38 GEYIKLKVIG-QDSS-----EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD-NHTPKE 98 (115)
T ss_dssp -CEEEEEEEC-TTSC-----EEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCT-TCCTTT
T ss_pred CCeEEEEEEc-CCCC-----EEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCC-CCCHHH
Confidence 4677777732 2111 23688999999999999999999999888778875555533 444444
No 115
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=39.45 E-value=18 Score=26.94 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=34.7
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEE--EcCccCCCCcccccC
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIF--VKNILPPTGMKMASF 95 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~--Vnn~lp~~~~~m~~l 95 (96)
.-|+.+.||++|...|....++.+++.=.++ +++.....+.+++++
T Consensus 19 v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~ 66 (320)
T 3shq_A 19 VDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISAL 66 (320)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSS
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHc
Confidence 4589999999999999999999877554442 356666667777654
No 116
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=38.71 E-value=39 Score=25.24 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=33.4
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
..-|+.+.||+++...|..+.++.+++.-.+ .++.....+.++++
T Consensus 247 ~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi-~~Gk~L~D~~TLsd 291 (307)
T 3ai5_A 247 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSD 291 (307)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTSBTGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEEEE-eCCeecCCCCCHHH
Confidence 3458999999999999999999987654433 35655566677765
No 117
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=38.67 E-value=19 Score=21.62 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=21.4
Q ss_pred eEEecCCCchHhHHHHHhhhhcCC
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLS 72 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~ 72 (96)
-..||.+++..+|..-|+.|+++.
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHccc
Confidence 356999999999999999999975
No 118
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=38.55 E-value=46 Score=18.50 Aligned_cols=34 Identities=9% Similarity=0.105 Sum_probs=23.8
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCcc
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL 85 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~l 85 (96)
...+-++...|++++...+ ++++. .+-+.||+.+
T Consensus 7 g~~~~~~~~~tv~~ll~~l----~~~~~-~v~vavN~~~ 40 (66)
T 1f0z_A 7 DQAMQCAAGQTVHELLEQL----DQRQA-GAALAINQQI 40 (66)
T ss_dssp SCEECCCTTCCHHHHHHHH----TCCCS-SEEEEETTEE
T ss_pred CEEEEcCCCCcHHHHHHHc----CCCCC-CEEEEECCEE
Confidence 3445678889999987755 55544 4458899966
No 119
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=38.37 E-value=18 Score=22.97 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=23.4
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCC
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSP 73 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~ 73 (96)
-...+||.+++..+|..-|++|+++..
T Consensus 24 ~~~i~V~~~i~f~~L~~kI~~Kl~~~~ 50 (98)
T 1q1o_A 24 IFTLLVEKVWNFDDLIMAINSKISNTH 50 (98)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEecCCCCHHHHHHHHHHHHcCCc
Confidence 346779999999999999999999753
No 120
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.47 E-value=49 Score=21.56 Aligned_cols=46 Identities=2% Similarity=-0.065 Sum_probs=34.4
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.-.-++.+.||++|...+-...+++++.--.+|- +.....+.|+++
T Consensus 29 ~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~-GKiLKD~eTL~~ 74 (118)
T 2daf_A 29 IVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS-GKILKNNETLVQ 74 (118)
T ss_dssp EEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET-TEEECSSCCHHH
T ss_pred EEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC-CeEcCCcchHHH
Confidence 3445899999999999999999988877666655 445466666654
No 121
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=36.98 E-value=77 Score=19.84 Aligned_cols=50 Identities=4% Similarity=0.034 Sum_probs=33.6
Q ss_pred CcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEc
Q 034364 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (96)
Q Consensus 28 ~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vn 82 (96)
+.|.|.|...... .....=|+.+.||+++..-|..+-++++++---+|.+
T Consensus 5 ~~v~l~V~~~~~~-----~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 5 EVYDLEITTNATD-----FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFD 54 (122)
T ss_dssp CEEEEEEEESSCC-----SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEEC
T ss_pred CEEEEEEEECCCC-----ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEec
Confidence 3567777443211 1233468999999999999999999987654434443
No 122
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=36.31 E-value=37 Score=26.93 Aligned_cols=31 Identities=10% Similarity=0.330 Sum_probs=28.1
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEE
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIF 80 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~ 80 (96)
..|+.+.+++++...|++++++++++.|=||
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g~p~dt~l~ly 181 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAGFIQDTSLILY 181 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHTCCTTCCEEEE
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEE
Confidence 5789999999999999999999999887776
No 123
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=35.83 E-value=71 Score=20.78 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=30.9
Q ss_pred EEecCCCchHhHHHHHhhhh-----cCCCC-CeEEEEEcCccCCCCccccc
Q 034364 50 YLVPADLTVGQFVYVVRKRI-----KLSPE-KAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l-----~l~~~-~alfl~Vnn~lp~~~~~m~~ 94 (96)
+-++.+.||+++...|.... +++++ +..=|..++.+...+.|+++
T Consensus 32 l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsd 82 (126)
T 1se9_A 32 KAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKD 82 (126)
T ss_dssp EEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGG
T ss_pred eecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHH
Confidence 56899999999999995433 35442 34445556667777777764
No 124
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=35.57 E-value=19 Score=21.37 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.9
Q ss_pred ecCCCchHhHHHHHhhhhcCC-CCCeEEE
Q 034364 52 VPADLTVGQFVYVVRKRIKLS-PEKAIFI 79 (96)
Q Consensus 52 Vp~~~tv~~f~~~irk~l~l~-~~~alfl 79 (96)
|+.+.|++++...|.+.++++ +.+++|+
T Consensus 20 v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 20 ATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred cCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 678889999999999999986 4456654
No 125
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=35.47 E-value=48 Score=18.83 Aligned_cols=40 Identities=8% Similarity=0.043 Sum_probs=27.0
Q ss_pred CCCchHhHHHHHhhhhcCCCC-CeEEEEEcCcc-CCCCcccc
Q 034364 54 ADLTVGQFVYVVRKRIKLSPE-KAIFIFVKNIL-PPTGMKMA 93 (96)
Q Consensus 54 ~~~tv~~f~~~irk~l~l~~~-~alfl~Vnn~l-p~~~~~m~ 93 (96)
...|++++...+..+-.+..- +.+-+.||+.. +..++.+.
T Consensus 19 ~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~ 60 (74)
T 3rpf_C 19 KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLK 60 (74)
T ss_dssp ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCC
T ss_pred CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCC
Confidence 567999998888765333321 45678899866 76666553
No 126
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=33.13 E-value=52 Score=21.36 Aligned_cols=35 Identities=9% Similarity=0.244 Sum_probs=28.6
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCC-CeEEEEEc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPE-KAIFIFVK 82 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~-~alfl~Vn 82 (96)
.-|=|+++.|+++|...|-+.++++++ .-|...+|
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~ 93 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQA 93 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeec
Confidence 357899999999999999999999866 45555555
No 127
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.24 E-value=80 Score=18.65 Aligned_cols=48 Identities=8% Similarity=0.147 Sum_probs=33.2
Q ss_pred CcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCC-CeEEEE
Q 034364 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPE-KAIFIF 80 (96)
Q Consensus 28 ~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~-~alfl~ 80 (96)
..|.|.|.... . + .....=|+.+.||+++...|..+-+++++ +.|++.
T Consensus 6 ~~v~l~I~~~~-~--~--~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 6 SGVMVFISSSL-N--S--FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CCEEEEEEETT-S--S--SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred cEEEEEEEECC-C--C--eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 34777774432 1 1 12345699999999999999999999865 455543
No 128
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=29.39 E-value=44 Score=18.82 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=25.1
Q ss_pred EecCCCchHhHHHHHhhhhcCCCCCeE--EEEEcCccCCCCccc
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPEKAI--FIFVKNILPPTGMKM 92 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~~al--fl~Vnn~lp~~~~~m 92 (96)
-+|...|++++...+..+.. .-+.+ -+.||+...+.+..+
T Consensus 21 ~~~~~~tv~~ll~~l~~~~p--~~~~v~~~v~vNg~~v~~~~~L 62 (77)
T 2q5w_D 21 VLEQALTVQQFEDLLFERYP--QINNKKFQVAVNEEFVQKSDFI 62 (77)
T ss_dssp CCSSCEEHHHHHHHHHHHCG--GGTTCCCEEEETTEEECTTSEE
T ss_pred ECCCCCCHHHHHHHHHHHCc--chhcceEEEEECCEECCCCCCc
Confidence 35778899999888765531 00223 688998664444444
No 129
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=28.18 E-value=42 Score=23.30 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=18.0
Q ss_pred HHHhhhhcCCCCCeEEEEEc
Q 034364 63 YVVRKRIKLSPEKAIFIFVK 82 (96)
Q Consensus 63 ~~irk~l~l~~~~alfl~Vn 82 (96)
.-||++|++.+++.+.++++
T Consensus 20 keiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEe
Confidence 35899999999999999987
No 130
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=27.96 E-value=82 Score=19.02 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=25.5
Q ss_pred ceeeEEecCC-CchHhHHHHHhhhhcCCCCCeEEEEEcCcc-CC
Q 034364 46 DKKKYLVPAD-LTVGQFVYVVRKRIKLSPEKAIFIFVKNIL-PP 87 (96)
Q Consensus 46 ~k~KflVp~~-~tv~~f~~~irk~l~l~~~~alfl~Vnn~l-p~ 87 (96)
....+-+|.. .|+++++..+ ++++.. +-+.||+.+ |.
T Consensus 26 NGe~~el~~~~~Tv~dLL~~L----~~~~~~-vaVavNg~iV~~ 64 (87)
T 1tyg_B 26 NGKDVKWKKDTGTIQDLLASY----QLENKI-VIVERNKEIIGK 64 (87)
T ss_dssp TTEEECCSSSCCBHHHHHHHT----TCTTSC-CEEEETTEEECG
T ss_pred CCEEEECCCCCCcHHHHHHHh----CCCCCC-EEEEECCEECCh
Confidence 3455667887 9999987754 566543 458899966 54
No 131
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=27.20 E-value=1.1e+02 Score=20.52 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=25.5
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCC
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEK 75 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~ 75 (96)
...+.||.+.|..+|-.+|+.-++.....
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 56889999999999999999999987543
No 132
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=26.40 E-value=60 Score=23.63 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEcc
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERA 37 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~ 37 (96)
-|.|||.+-.+...+.-..++|||+--.
T Consensus 64 Ls~~Er~~v~~~~~~~~~gr~pviaGvg 91 (307)
T 3s5o_A 64 LTSSERLEVVSRVRQAMPKNRLLLAGSG 91 (307)
T ss_dssp SCHHHHHHHHHHHHHTSCTTSEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCcEEEecC
Confidence 4679999999999988899999999654
No 133
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=25.33 E-value=49 Score=20.49 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhCCCccc
Q 034364 14 RRQAEAARIRDKYPDRIP 31 (96)
Q Consensus 14 ~R~~e~~~ir~kyP~kIp 31 (96)
.|+--++.+..+||++|-
T Consensus 41 ~RkLIYQ~~~~kfp~~i~ 58 (87)
T 1ug8_A 41 QRKLIYQTLSWKYPKGIH 58 (87)
T ss_dssp HHHHHHHHHHHHSSSSEE
T ss_pred HHHHHHHHHHHhcCCceE
Confidence 688889999999999983
No 134
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=25.04 E-value=43 Score=24.37 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+=.+...+.-.+|+|||+--..
T Consensus 54 Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 82 (300)
T 3eb2_A 54 LGTAQREAVVRATIEAAQRRVPVVAGVAS 82 (300)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCBEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 46799999999888888999999996543
No 135
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=24.97 E-value=1.3e+02 Score=21.48 Aligned_cols=61 Identities=8% Similarity=0.088 Sum_probs=43.1
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
.++|-|-| +. +=....|-|-++.++..++....++.+++..+--|+|=+..+- .++|..+|
T Consensus 55 ~e~InLKV-k~------dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~-~ddTPeDL 115 (207)
T 3tix_A 55 ETHINLKV-SD------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQ-ADQTPEDL 115 (207)
T ss_dssp CCEEEEEE-EC------SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECC-SSCCTTTT
T ss_pred CCcEEEEE-ec------CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecC-CCCCHHHc
Confidence 44566666 22 1234578899999999999999999999998777888444553 34454443
No 136
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=24.86 E-value=49 Score=24.13 Aligned_cols=29 Identities=14% Similarity=0.068 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-.+|+|||+--..
T Consensus 65 Lt~~Er~~v~~~~~~~~~grvpviaGvg~ 93 (304)
T 3l21_A 65 TTDGEKIELLRAVLEAVGDRARVIAGAGT 93 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 46799999999998888999999996543
No 137
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=24.82 E-value=47 Score=19.15 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=26.1
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccc
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKM 92 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m 92 (96)
...+-+|...|++++...+ +++.+ .+-+.||+.+.+.+..+
T Consensus 22 ~~~~~~~~~~Tv~dLl~~L----~~~~~-~v~VavNg~~v~~~~~L 62 (77)
T 1rws_A 22 EKEIEWREGMKVRDILRAV----GFNTE-SAIAKVNGKVVLEDDEV 62 (77)
T ss_dssp CCCCCCCSSCCHHHHHHTT----TCSSC-SSCEEETTEEECSSSCC
T ss_pred CEEEECCCCCcHHHHHHHh----CCCCc-CEEEEECCEECCCCCCc
Confidence 3444568888999977654 45543 34678998664444444
No 138
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=24.61 E-value=1.1e+02 Score=17.56 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=24.4
Q ss_pred EEecCCCchHhHHHHHhhhhc------C-CCC---CeEEEEEcCcc
Q 034364 50 YLVPADLTVGQFVYVVRKRIK------L-SPE---KAIFIFVKNIL 85 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~------l-~~~---~alfl~Vnn~l 85 (96)
.-++...|++++...+..+.. + ..+ ..+.++||+..
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~ 64 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNN 64 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSB
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEE
Confidence 346667899999998876641 1 111 45678999855
No 139
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=24.39 E-value=75 Score=22.92 Aligned_cols=29 Identities=10% Similarity=-0.117 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-..|+|||+--..
T Consensus 53 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 81 (294)
T 3b4u_A 53 VGSRERQAILSSFIAAGIAPSRIVTGVLV 81 (294)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 46799999999999888899999987654
No 140
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=24.17 E-value=52 Score=23.68 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-.+|+|||+--..
T Consensus 50 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 78 (289)
T 2yxg_A 50 LSHEEHKKVIEKVVDVVNGRVQVIAGAGS 78 (289)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 46799999888888888889999996654
No 141
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=23.73 E-value=71 Score=23.37 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.+||.+=.+...+.-.+|+|||+--..
T Consensus 57 Ls~~Er~~v~~~~~~~~~grvpViaGvg~ 85 (311)
T 3h5d_A 57 LTHDEELELFAAVQKVVNGRVPLIAGVGT 85 (311)
T ss_dssp SCHHHHHHHHHHHHHHSCSSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 46799999999999988999999996543
No 142
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=23.65 E-value=53 Score=24.03 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEcc
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERA 37 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~ 37 (96)
-|.|||.+-.+...+.-.+|+|||+--.
T Consensus 62 Ls~eEr~~v~~~~v~~~~grvpViaGvg 89 (316)
T 3e96_A 62 LSLEEAKEEVRRTVEYVHGRALVVAGIG 89 (316)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 4679999999988888899999999754
No 143
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=23.48 E-value=54 Score=23.86 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-.+|+|||+--..
T Consensus 66 Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 94 (304)
T 3cpr_A 66 TTAAEKLELLKAVREEVGDRAKLIAGVGT 94 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEecCCC
Confidence 46799999888888888899999997654
No 144
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=23.48 E-value=55 Score=23.57 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-.+|+|||+--..
T Consensus 51 Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~ 79 (291)
T 3a5f_A 51 MTETERKETIKFVIDKVNKRIPVIAGTGS 79 (291)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCc
Confidence 46799999888888888899999986654
No 145
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=23.31 E-value=55 Score=24.01 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-..|+|||+--..
T Consensus 73 Ls~~Er~~v~~~~v~~~~grvpViaGvg~ 101 (314)
T 3qze_A 73 LDVEEHIQVIRRVVDQVKGRIPVIAGTGA 101 (314)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 46799999998888888899999996543
No 146
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=23.26 E-value=55 Score=23.60 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-.+|+|||+--..
T Consensus 50 Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 78 (294)
T 2ehh_A 50 LTFEEHEKVIEFAVKRAAGRIKVIAGTGG 78 (294)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 46799999888888888889999986654
No 147
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=23.23 E-value=56 Score=23.65 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+=.+...+.-.+|+|||+--..
T Consensus 57 Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 85 (297)
T 3flu_A 57 LSVEEHTAVIEAVVKHVAKRVPVIAGTGA 85 (297)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 46799999999888888899999996543
No 148
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=22.92 E-value=57 Score=23.83 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+=.+...+.-..|+|||+--..
T Consensus 58 Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 86 (309)
T 3fkr_A 58 ITDDERDVLTRTILEHVAGRVPVIVTTSH 86 (309)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 46799999988888888899999997654
No 149
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=22.89 E-value=57 Score=23.47 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+=.+...+.-.+|+|||+--..
T Consensus 51 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 79 (291)
T 3tak_A 51 LSMEEHTQVIKEIIRVANKRIPIIAGTGA 79 (291)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 46799999998888888899999996543
No 150
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=22.80 E-value=58 Score=23.46 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-.+|+|||+--..
T Consensus 51 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 79 (292)
T 2ojp_A 51 LNHDEHADVVMMTLDLADGRIPVIAGTGA 79 (292)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 46799999888888888889999986654
No 151
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=22.64 E-value=58 Score=23.48 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-..|+|||+--..
T Consensus 54 Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 82 (293)
T 1f6k_A 54 LSTEEKKEIFRIAKDEAKDQIALIAQVGS 82 (293)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 46799999888888888899999986654
No 152
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=22.54 E-value=18 Score=25.32 Aligned_cols=42 Identities=7% Similarity=0.150 Sum_probs=0.0
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccc
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKM 92 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m 92 (96)
+-|..+.||.++...|....++++++.-.+|- +.....+.++
T Consensus 15 LeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~-GK~LeD~~TL 56 (189)
T 2xzm_9 15 YTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN-GFIAPNTELV 56 (189)
T ss_dssp -------------------------------------------
T ss_pred EEECCcChHHHHHHHHHHHhCcChhHEEEEec-CeECCCCCcc
Confidence 34788999999999999999988765544443 4333344444
No 153
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=22.33 E-value=1.4e+02 Score=18.27 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=39.5
Q ss_pred hCCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccC
Q 034364 25 KYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILP 86 (96)
Q Consensus 25 kyP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp 86 (96)
.-+++|-|.|.-.. +. ....|-|.++-+++-++....++.+++++.--|+|=+..+-
T Consensus 21 ~~~~~I~LkV~~~d-g~----~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~ 77 (97)
T 2jxx_A 21 ETSQQLQLRVQGKE-KH----QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLS 77 (97)
T ss_dssp CSCSEEEEEEEESS-SS----CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECC
T ss_pred CCCCeEEEEEEcCC-CC----EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcC
Confidence 34566666663221 11 12468899999999999999999999988666776444553
No 154
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=22.32 E-value=1.2e+02 Score=19.09 Aligned_cols=35 Identities=11% Similarity=0.347 Sum_probs=23.9
Q ss_pred EEecC---CCchHhHHHHHhhhh-cCC---------CCCeEEEEEcCc
Q 034364 50 YLVPA---DLTVGQFVYVVRKRI-KLS---------PEKAIFIFVKNI 84 (96)
Q Consensus 50 flVp~---~~tv~~f~~~irk~l-~l~---------~~~alfl~Vnn~ 84 (96)
.-+|. ..||++++..|..++ .+. --.-+.+|||+.
T Consensus 34 vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~ 81 (114)
T 1wgk_A 34 VALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDA 81 (114)
T ss_dssp EEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSS
T ss_pred EEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCe
Confidence 66783 369999999998775 211 112377999973
No 155
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=22.26 E-value=59 Score=23.63 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-..|+|||+--..
T Consensus 61 Ls~eEr~~v~~~~~~~~~grvpViaGvg~ 89 (303)
T 2wkj_A 61 QSLSEREQVLEIVAEEAKGKIKLIAHVGC 89 (303)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 46799999888888888889999996654
No 156
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=22.26 E-value=52 Score=24.17 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.+||++-.+...+.-..|+|||+--..
T Consensus 74 Ls~~Er~~v~~~~v~~~~grvpViaGvg~ 102 (315)
T 3na8_A 74 LSDPEWDEVVDFTLKTVAHRVPTIVSVSD 102 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCBEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 46799999999988888999999996543
No 157
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=22.18 E-value=95 Score=19.31 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=29.6
Q ss_pred CCCCCCCcceeeEEe-cCCCchHhHHHHHhhhhcCCCCCeEEEEE
Q 034364 38 EKSDVPEIDKKKYLV-PADLTVGQFVYVVRKRIKLSPEKAIFIFV 81 (96)
Q Consensus 38 ~~~~lp~l~k~KflV-p~~~tv~~f~~~irk~l~l~~~~alfl~V 81 (96)
+++..|+++.. +++ |+.-||.+|.+.|.+-|.- +..|-.|
T Consensus 18 ~~G~~pd~~dp-viL~~~GsTv~Dfa~~IH~di~~---~fkyA~V 58 (93)
T 2eki_A 18 PKGQLPDYTSP-VVLPYSRTTVEDFCMKIHKNLIK---EFKYALV 58 (93)
T ss_dssp CTTSCCCSSSC-EEEETTSCCHHHHHHHHCTTCTT---TEEEEEE
T ss_pred CCCCCCCCCCC-EEEecCCCCHHHHHHHHHHHHHh---hccEEEE
Confidence 35778888774 566 9999999999999887742 3345555
No 158
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=22.15 E-value=1.6e+02 Score=20.55 Aligned_cols=46 Identities=9% Similarity=0.059 Sum_probs=31.9
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCC--CeEEEEEcC-cc---CCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPE--KAIFIFVKN-IL---PPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~--~alfl~Vnn-~l---p~~~~~m~~ 94 (96)
...+.+..|+.++...+++.++++++ --|+.|-++ +. -..+.++.+
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d 206 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQD 206 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTT
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHH
Confidence 35679999999999999999999876 445554432 22 234556644
No 159
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=22.04 E-value=60 Score=23.77 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||++-.+...+.-..|+|||+--..
T Consensus 62 Ls~eEr~~vi~~~~~~~~grvpViaGvg~ 90 (314)
T 3d0c_A 62 LTIEEAKQVATRVTELVNGRATVVAGIGY 90 (314)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEECS
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEecCCc
Confidence 46799999888888888899999996654
No 160
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=21.84 E-value=2.1e+02 Score=19.94 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=41.9
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.++|-|-| +. +=....|-|.++-++..++.....+.+++..+--|+|=+..+- .++|..+
T Consensus 27 ~~~I~LkV-~~------~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~-~~~TP~d 86 (200)
T 3pge_A 27 ETHINLKV-SD------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPED 86 (200)
T ss_dssp CCCEEEEE-EC------SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECC-TTCCTTT
T ss_pred CCeEEEEE-ec------CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcC-CCCCHHH
Confidence 45566666 22 1224578899999999999999999999988777887554542 3444443
No 161
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=21.80 E-value=62 Score=23.33 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-..|+|||+--..
T Consensus 52 Lt~~Er~~v~~~~~~~~~grvpviaGvg~ 80 (292)
T 3daq_A 52 LTTDEKELILKTVIDLVDKRVPVIAGTGT 80 (292)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCc
Confidence 35799999888888888899999996543
No 162
>3mly_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.70A {Human immunodeficiency virus 1} PDB: 2b1h_P 3mlu_P 3ujj_P
Probab=21.78 E-value=20 Score=16.14 Aligned_cols=14 Identities=36% Similarity=0.778 Sum_probs=10.7
Q ss_pred hhhhcCCCCCeEEE
Q 034364 66 RKRIKLSPEKAIFI 79 (96)
Q Consensus 66 rk~l~l~~~~alfl 79 (96)
|+++++.|..++|-
T Consensus 4 rk~i~iGpG~~fy~ 17 (23)
T 3mly_P 4 KKSIKIRPRQAFYA 17 (26)
T ss_pred EEEEeecCCeeEEe
Confidence 56788888888773
No 163
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=21.52 E-value=62 Score=23.97 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-.+|+|||+--..
T Consensus 84 Ls~eEr~~vi~~~ve~~~grvpViaGvg~ 112 (332)
T 2r8w_A 84 LTREERRRAIEAAATILRGRRTLMAGIGA 112 (332)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 46799999888888888899999996654
No 164
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=21.52 E-value=80 Score=23.02 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.+||.+=.+...+.- .|+|||+--..
T Consensus 58 Lt~~Er~~v~~~~v~~~-grvpViaGvg~ 85 (313)
T 3dz1_A 58 LDAAEAEAVATRFIKRA-KSMQVIVGVSA 85 (313)
T ss_dssp SCHHHHHHHHHHHHHHC-TTSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHc-CCCcEEEecCC
Confidence 46799999999999988 99999996543
No 165
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=21.49 E-value=63 Score=23.44 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-.+|+|||+--..
T Consensus 62 Ls~eEr~~v~~~~~~~~~grvpViaGvg~ 90 (301)
T 1xky_A 62 LTSEEKVALYRHVVSVVDKRVPVIAGTGS 90 (301)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCceEEeCCCC
Confidence 46699999888888888899999986654
No 166
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=21.40 E-value=55 Score=23.70 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-.+|+|||+--..
T Consensus 50 Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 78 (297)
T 2rfg_A 50 LTEEEHKRVVALVAEQAQGRVPVIAGAGS 78 (297)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCBEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEccCC
Confidence 46799999888888888899999996654
No 167
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=21.29 E-value=64 Score=23.38 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhhCCC-cccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPD-RIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~-kIpVIvEr~~ 38 (96)
-|.|||.+=.+...+.-.+ |+|||+--..
T Consensus 57 Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~ 86 (301)
T 3m5v_A 57 LTHEEHRTCIEIAVETCKGTKVKVLAGAGS 86 (301)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCeEEEeCCC
Confidence 4679999999988888888 9999996543
No 168
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=21.22 E-value=64 Score=23.45 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-..|+|||+--..
T Consensus 62 Ls~eEr~~vi~~~~~~~~grvpViaGvg~ 90 (306)
T 1o5k_A 62 VNEDEREKLVSRTLEIVDGKIPVIVGAGT 90 (306)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEcCCC
Confidence 46799999888888888899999986654
No 169
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=21.08 E-value=90 Score=17.97 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCcccEEEEccCCCC---CCCcceeeEEecCCCchHhHHHHHhhhhcCC
Q 034364 17 AEAARIRDKYPDRIPVIVERAEKSD---VPEIDKKKYLVPADLTVGQFVYVVRKRIKLS 72 (96)
Q Consensus 17 ~e~~~ir~kyP~kIpVIvEr~~~~~---lp~l~k~KflVp~~~tv~~f~~~irk~l~l~ 72 (96)
.-...+++.+| .+|||+=-..... ...++.- -.+.+..+..++...|++-+.-.
T Consensus 68 ~~~~~l~~~~~-~~~ii~~s~~~~~~~~~~~~~~~-~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 68 QVARVAREIDP-NMPIVYISGHAALEWASNGVPDS-IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp HHHHHHHHHCT-TCCEEEEESSCCTTHHHHSCTTC-EEEESSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCC-CCCEEEEeCCccHHHHHhhcCCc-ceEeCCCCHHHHHHHHHHHHhcC
Confidence 34566777766 6888875433211 0001111 25677888999999998777544
No 170
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=20.80 E-value=64 Score=24.52 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+...+|+|||+--..
T Consensus 109 Ls~eEr~~vi~~~ve~~~grvpViaGvg~ 137 (360)
T 4dpp_A 109 MSWDEHIMLIGHTVNCFGGSIKVIGNTGS 137 (360)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 46799999888888888999999996543
No 171
>3uji_P Envelope glycoprotein GP160; IG domains, antibody FAB, antigen binding, the third variabl of HIV-1 GP120, immune system; HET: NAG FUC; 1.60A {Hiv-1 M} PDB: 3mlw_P 1f58_P 3mlx_P* 1ai1_P 1acy_P 2b1a_P 3mlt_P
Probab=20.55 E-value=22 Score=16.01 Aligned_cols=13 Identities=46% Similarity=0.984 Sum_probs=10.3
Q ss_pred hhhhcCCCCCeEE
Q 034364 66 RKRIKLSPEKAIF 78 (96)
Q Consensus 66 rk~l~l~~~~alf 78 (96)
|+++++.|..++|
T Consensus 4 rk~i~iGpG~~fy 16 (23)
T 3uji_P 4 RKRIHIGPGRAFY 16 (26)
T ss_pred EEEEeecCCeeEE
Confidence 5677888888877
No 172
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=20.54 E-value=59 Score=23.89 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.+||.+-.+...+.-.+|+|||+--..
T Consensus 72 Ls~~Er~~v~~~~v~~~~grvpViaGvg~ 100 (315)
T 3si9_A 72 LTHEEHKRIIELCVEQVAKRVPVVAGAGS 100 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCBEEECCC
T ss_pred cCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 46799999999888888899999996543
No 173
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=20.47 E-value=68 Score=23.52 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.+||.+-.+...+.-..|+|||+--..
T Consensus 61 Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 89 (318)
T 3qfe_A 61 LTREERAQLIATARKAVGPDFPIMAGVGA 89 (318)
T ss_dssp SCHHHHHHHHHHHHHHHCTTSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 46799999999988888999999996543
No 174
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=20.43 E-value=60 Score=23.37 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-.+|+|||+--..
T Consensus 50 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 78 (292)
T 2vc6_A 50 LSKSEHEQVVEITIKTANGRVPVIAGAGS 78 (292)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCBEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 46799999888888888889999986654
Done!