BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034366
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
Length = 89
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
M + KA IK DM + L+ Y++ IA HIKKEFDK Y W C+V
Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNI--EKDIAAHIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
G NFG Y TH+ FIYF L + L+FK+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 5 KASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNF 64
KA IK DM + L+ Y++ IA HIKKEFDK Y W C+VG NF
Sbjct: 1 KAVIKNADMSEEMQQDSVECATQALEKYNI--EKDIAAHIKKEFDKKYNPTWHCIVGRNF 58
Query: 65 GCYFTHKHGTFIYFSLETLNFLIFKA 90
G Y TH+ FIYF L + L+FK+
Sbjct: 59 GSYVTHETKHFIYFYLGQVAILLFKS 84
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
M + KA IK DM + L+ Y++ IA +IKKEFDK Y W C+V
Sbjct: 3 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
G NFG Y TH+ FIYF L + L+FK+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 90
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
M + KA IK DM + L+ Y++ IA +IKKEFDK Y W C+V
Sbjct: 3 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EPDIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
G NFG Y TH+ FIYF L + L+FK+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 90
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of
Dynein Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
M + KA IK DM + L+ Y++ IA +IKKEFDK Y W C+V
Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
G NFG Y TH+ FIYF L + L+FK+
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 88
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
M + KA IK DM + L+ Y++ IA +IKKEFDK Y W C+V
Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFK 89
G NFG Y TH+ FIYF L + L+FK
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
M + KA IK DM ++ Y++ IA +IKKEFDK Y W C+V
Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
G NFG Y TH+ FIYF L + L+FK+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
M + KA IK DMP L+ Y++ IA IKKEFD+ + W CVV
Sbjct: 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNI--EKDIAAFIKKEFDRKHNPTWHCVV 58
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
G NFG Y TH+ FIYF + + L+FK+
Sbjct: 59 GRNFGSYVTHETHHFIYFYIGQVAVLLFKS 88
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
M + KA IK DM ++ Y++ IA +IKKEFDK Y W C+V
Sbjct: 4 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 61
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
G NFG Y TH+ FIYF L + L+FK+
Sbjct: 62 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 91
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
Length = 94
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
M + KA IK DM ++ Y++ IA +IKKEFDK Y W C+V
Sbjct: 6 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 63
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
G NFG Y TH+ FIYF L + L+FK+
Sbjct: 64 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 93
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 8 IKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCY 67
+K DM + L Y+V IA HIKKEFD+ Y W CVVG NFG Y
Sbjct: 21 VKNVDMTEEMQIDAIDCANQALQKYNV--EKDIAAHIKKEFDRKYDPTWHCVVGRNFGSY 78
Query: 68 FTHKHGTFIYFSLETLNFLIFKAA 91
TH+ FIYF + + L+FK+
Sbjct: 79 VTHETKNFIYFYIGQVAILLFKSG 102
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
M + KA IK DM ++ Y++ IA +IKKEFDK Y W C+V
Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GS--NFGCYFTHKHGTFIYFSLETLNFLIFKA 90
G NFG Y TH+ FIYF L + L+FK+
Sbjct: 59 GRSGNFGSYVTHETKHFIYFYLGQVAILLFKS 90
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 8 IKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCY 67
+K +D+ K LD Y + IA +KK+ D YG W +VG NFG Y
Sbjct: 16 VKASDITDKLKEDILTISKDALDKYQL--ERDIAGTVKKQLDVKYGNTWHVIVGKNFGSY 73
Query: 68 FTHKHGTFIYFSLETLNFLIFKAA 91
TH+ G F+YF + L FL+FK A
Sbjct: 74 VTHEKGHFVYFYIGPLAFLVFKTA 97
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 29 LDLYDVVDSISIATHIKKEFDKI 51
L+L D+++ + I+ H +KE D+I
Sbjct: 68 LNLIDIIERLGISYHFEKEIDEI 90
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 29 LDLYDVVDSISIATHIKKEFDKI 51
L+L D+++ + I+ H +KE D+I
Sbjct: 68 LNLIDIIERLGISYHFEKEIDEI 90
>pdb|2E9X|C Chain C, The Crystal Structure Of Human Gins Core Complex
pdb|2E9X|G Chain G, The Crystal Structure Of Human Gins Core Complex
Length = 219
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 47 EFDKIYGGGWQCVVGSNFGCYFTHKHGTFIY-FSLETLNF 85
E KIY GW+ V ++ HK G Y F + L+F
Sbjct: 90 ELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHF 129
>pdb|2EHO|D Chain D, Crystal Structure Of Human Gins Complex
pdb|2EHO|H Chain H, Crystal Structure Of Human Gins Complex
pdb|2EHO|L Chain L, Crystal Structure Of Human Gins Complex
Length = 216
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 47 EFDKIYGGGWQCVVGSNFGCYFTHKHGTFIY-FSLETLNF 85
E KIY GW+ V ++ HK G Y F + L+F
Sbjct: 87 ELPKIYQEGWRTVFSADPNVVDLHKXGPHFYGFGSQLLHF 126
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
2-(2-
Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol
Length = 223
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 53 GGGWQCVVGSNFGCYFTHKHGTFIYFSLET--LNFLIFKAAITP 94
GGG C V + CY H+ F +L L F K A +P
Sbjct: 126 GGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSP 169
>pdb|3KR7|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain
pdb|3KR8|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3KR8|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3MHJ|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3MHJ|B Chain B, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3P0N|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0N|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3U9H|A Chain A, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9H|B Chain B, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9Y|A Chain A, Crystal Structure Of Human Tankyrase 2 Catalytic Domain In
Complex With Olaparib
pdb|3UA9|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|3UA9|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|4AVU|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVU|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVW|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
pdb|4AVW|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
Length = 240
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 53 GGGWQCVVGSNFGCYFTHKHGTFIYFSLET--LNFLIFKAAITP 94
GGG C V + CY H+ F +L L F K A +P
Sbjct: 154 GGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSP 197
>pdb|2Q9Q|D Chain D, The Crystal Structure Of Full Length Human Gins Complex
pdb|2Q9Q|H Chain H, The Crystal Structure Of Full Length Human Gins Complex
Length = 220
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 47 EFDKIYGGGWQCVVGSNFGCYFTHKHGTFIY-FSLETLNF 85
E KIY GW+ V ++ HK G Y F + L+F
Sbjct: 91 ELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHF 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,552,541
Number of Sequences: 62578
Number of extensions: 84002
Number of successful extensions: 198
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 20
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)