Query 034366
Match_columns 96
No_of_seqs 115 out of 546
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 21:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 4.4E-45 1.5E-49 229.1 8.6 89 1-91 1-89 (89)
2 4ds1_A Dynein light chain 1, c 100.0 4.3E-43 1.5E-47 223.1 9.4 87 3-91 11-97 (97)
3 1yo3_A Dynein light chain 1; s 100.0 2.6E-42 8.8E-47 221.2 10.4 87 3-91 16-102 (102)
4 3e9v_A Protein BTG2; B-cell tr 81.1 1 3.4E-05 28.8 2.4 46 12-57 1-48 (120)
5 1use_A VAsp, vasodilator-stimu 72.2 5.1 0.00018 21.3 3.3 34 15-52 10-43 (45)
6 2z15_A Protein TOB1; human TOB 69.2 1.5 5.3E-05 28.3 0.9 47 11-57 6-52 (130)
7 1eci_A Ectatomin; pore-forming 62.2 13 0.00045 18.5 4.8 32 15-50 5-36 (37)
8 3gzx_A Biphenyl dioxygenase su 49.7 44 0.0015 25.4 6.2 46 42-92 44-90 (457)
9 1eci_B Ectatomin; pore-forming 49.3 6.8 0.00023 19.2 1.0 13 38-50 22-34 (34)
10 2bmo_A Oxygenase-alpha NBDO; n 46.3 50 0.0017 24.6 6.0 44 44-92 25-69 (447)
11 1qwg_A PSL synthase;, (2R)-pho 44.7 55 0.0019 23.2 5.6 48 11-61 109-168 (251)
12 3id6_A NOP5, PRE mRNA splicing 44.0 22 0.00074 25.5 3.5 40 10-51 222-261 (268)
13 1wgn_A UBAP1, ubiquitin associ 43.7 36 0.0012 19.2 3.7 29 23-52 34-62 (63)
14 3vca_A Ring-hydroxylating diox 43.7 59 0.002 24.3 6.0 46 42-92 30-76 (412)
15 1wj7_A Hypothetical protein (R 43.6 13 0.00044 23.1 1.9 35 24-62 56-91 (104)
16 2b1x_A Naphthalene dioxygenase 41.3 66 0.0023 24.1 6.0 44 44-92 34-78 (470)
17 2kzv_A Uncharacterized protein 41.3 9.8 0.00034 22.9 1.1 35 19-53 7-49 (92)
18 3i1i_A Homoserine O-acetyltran 40.6 9.1 0.00031 26.1 1.0 34 37-70 129-162 (377)
19 1uli_A Biphenyl dioxygenase la 39.7 73 0.0025 23.9 6.0 45 43-92 43-88 (460)
20 2b61_A Homoserine O-acetyltran 38.0 14 0.00048 25.3 1.7 34 37-70 136-169 (377)
21 3n0q_A Putative aromatic-ring 37.4 85 0.0029 23.4 6.0 46 42-92 28-74 (409)
22 2gbw_A Biphenyl 2,3-dioxygenas 36.9 86 0.0029 23.4 6.0 44 44-92 26-70 (454)
23 3ipw_A Hydrolase TATD family p 35.1 44 0.0015 24.2 4.0 50 13-62 147-204 (325)
24 2elk_A SPCC24B10.08C protein; 35.0 46 0.0016 17.7 3.2 21 25-45 20-40 (58)
25 1k8r_B Protein kinase BYR2; si 35.0 79 0.0027 19.4 5.9 43 52-95 36-84 (110)
26 2jt1_A PEFI protein; solution 34.0 34 0.0011 19.6 2.6 30 13-43 1-33 (77)
27 3icx_A PRE mRNA splicing prote 30.8 46 0.0016 23.6 3.4 39 10-50 89-127 (255)
28 4fz4_A 0197-18KD, uncharacteri 30.3 1E+02 0.0036 20.2 4.8 32 21-54 85-116 (154)
29 2dst_A Hypothetical protein TT 29.9 40 0.0014 19.7 2.6 32 37-69 63-94 (131)
30 1x41_A Transcriptional adaptor 29.8 63 0.0022 17.2 3.2 21 25-45 19-39 (60)
31 3vba_A Isopropylmalate/citrama 29.6 21 0.00072 24.0 1.4 32 38-69 33-68 (176)
32 2ozb_B U4/U6 small nuclear rib 29.4 50 0.0017 23.4 3.4 39 10-50 103-141 (260)
33 2v6y_A AAA family ATPase, P60 28.7 87 0.003 17.9 4.1 15 17-31 7-21 (83)
34 2hcu_A 3-isopropylmalate dehyd 27.5 27 0.00094 24.1 1.7 17 51-67 82-98 (213)
35 3byp_A CZRB protein; membrane 26.8 44 0.0015 19.0 2.3 23 38-61 60-82 (94)
36 1sg7_A Putative cation transpo 26.4 1.1E+02 0.0039 18.5 4.8 47 11-57 27-93 (96)
37 2yus_A SWI/SNF-related matrix- 25.3 74 0.0025 18.2 3.1 21 24-45 28-48 (79)
38 2pkp_A Homoaconitase small sub 25.1 28 0.00097 23.1 1.4 16 52-67 49-64 (170)
39 3m6z_A Topoisomerase V; helix- 24.9 80 0.0027 22.5 3.7 36 13-50 286-321 (380)
40 2pl5_A Homoserine O-acetyltran 24.7 32 0.0011 23.3 1.6 34 37-70 127-160 (366)
41 3ajm_A Programmed cell death p 23.5 36 0.0012 23.7 1.7 14 37-50 124-137 (213)
42 3sty_A Methylketone synthase 1 23.3 42 0.0014 21.3 1.9 34 37-70 63-96 (267)
43 1qto_A Bleomycin-binding prote 22.8 1.1E+02 0.0036 17.5 3.6 18 73-90 36-53 (122)
44 3g5g_A Regulatory protein; tra 22.8 1E+02 0.0034 17.8 3.5 35 9-44 17-51 (99)
45 3vp5_A Transcriptional regulat 22.6 1.4E+02 0.0049 18.3 4.8 33 11-43 7-41 (189)
46 3ph0_C ASCG; type III secretio 22.2 1.1E+02 0.0037 17.0 3.2 34 13-50 1-34 (61)
47 3swj_A CHUZ, putative uncharac 21.9 2E+02 0.0068 19.7 6.3 63 14-80 64-130 (251)
48 3uh9_A Metallothiol transferas 21.9 1.3E+02 0.0044 17.6 5.3 24 70-93 32-55 (145)
49 1nf1_A NF1-333, protein (neuro 21.6 34 0.0012 24.6 1.3 39 18-57 146-184 (333)
50 1xrk_A Bleomycin resistance pr 21.5 1.2E+02 0.0043 17.3 5.0 20 73-92 36-55 (124)
51 3v7e_A Ribosome-associated pro 21.5 1.2E+02 0.004 17.2 3.5 24 4-27 28-51 (82)
52 1u84_A Hypothetical protein; s 21.5 67 0.0023 19.2 2.4 28 25-54 37-64 (90)
53 3fla_A RIFR; alpha-beta hydrol 21.5 48 0.0016 21.1 1.9 34 36-70 68-101 (267)
54 4b6i_A SMA2266; signaling prot 21.0 1.4E+02 0.005 18.2 3.9 41 14-55 31-74 (102)
55 1wh8_A CUT-like 2, homeobox pr 20.9 1.1E+02 0.0038 18.9 3.4 17 36-52 28-44 (111)
56 4hfk_B Putative uncharacterize 20.4 1.5E+02 0.0053 18.2 4.0 41 14-55 30-73 (105)
57 4ebb_A Dipeptidyl peptidase 2; 20.1 82 0.0028 23.7 3.2 27 40-68 115-141 (472)
58 3zzp_A TS9, ribosomal protein 20.0 1.3E+02 0.0046 17.0 3.7 27 6-32 49-75 (77)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=4.4e-45 Score=229.10 Aligned_cols=89 Identities=46% Similarity=0.799 Sum_probs=85.7
Q ss_pred CCCCCceEEeCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceEEEEeCccceeEEEccCcEEEEEe
Q 034366 1 MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSL 80 (96)
Q Consensus 1 M~~~~~~I~~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~~~~~~i~F~~ 80 (96)
|++++++|+.+|||++||++|+++|.+|+++|+.+ ++||++||++||++|||+||||||++|||+|||++++||||++
T Consensus 1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~e--k~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~ 78 (89)
T 3rjs_A 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIE--KDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYI 78 (89)
T ss_dssp --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEE
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEE
Confidence 88999999999999999999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEecC
Q 034366 81 ETLNFLIFKAA 91 (96)
Q Consensus 81 ~~~~illfkt~ 91 (96)
|+++||||||+
T Consensus 79 g~~~iLlfKtg 89 (89)
T 3rjs_A 79 GQVAVLLFKSG 89 (89)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEecC
Confidence 99999999996
No 2
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-43 Score=223.11 Aligned_cols=87 Identities=38% Similarity=0.755 Sum_probs=84.3
Q ss_pred CCCceEEeCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceEEEEeCccceeEEEccCcEEEEEeCC
Q 034366 3 EGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLET 82 (96)
Q Consensus 3 ~~~~~I~~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~~~~~~i~F~~~~ 82 (96)
.++++|+.+|||++||++|+++|.+|+++|+.+ ++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus 11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~~e--k~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~ 88 (97)
T 4ds1_A 11 KSTPIVKASDITDKLKEDILTISKDALDKYQLE--RDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGP 88 (97)
T ss_dssp -CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETT
T ss_pred CCccEEEECCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECC
Confidence 378999999999999999999999999999977 999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecC
Q 034366 83 LNFLIFKAA 91 (96)
Q Consensus 83 ~~illfkt~ 91 (96)
++||||||+
T Consensus 89 ~aiLlfKtg 97 (97)
T 4ds1_A 89 LAFLVFKTA 97 (97)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecC
Confidence 999999996
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=2.6e-42 Score=221.24 Aligned_cols=87 Identities=46% Similarity=0.826 Sum_probs=83.3
Q ss_pred CCCceEEeCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceEEEEeCccceeEEEccCcEEEEEeCC
Q 034366 3 EGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLET 82 (96)
Q Consensus 3 ~~~~~I~~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~~~~~~i~F~~~~ 82 (96)
.++++|+.+|||++||++|+++|.+|+++|+.+ ++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus 16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~e--kdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~ 93 (102)
T 1yo3_A 16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYNVE--KDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQ 93 (102)
T ss_dssp --CCCEEETTSCHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETT
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECC
Confidence 478999999999999999999999999999977 999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecC
Q 034366 83 LNFLIFKAA 91 (96)
Q Consensus 83 ~~illfkt~ 91 (96)
++||||||+
T Consensus 94 ~aiLlfKt~ 102 (102)
T 1yo3_A 94 VAILLFKSG 102 (102)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecC
Confidence 999999985
No 4
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=81.09 E-value=1 Score=28.82 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHHhhh--cCCCCHHHHHHHHHHhhcccCCCceE
Q 034366 12 DMPVKMQVQAMASASQALDL--YDVVDSISIATHIKKEFDKIYGGGWQ 57 (96)
Q Consensus 12 dM~~~~q~~~~~~~~~a~~~--~~~~~~~~iA~~IK~~lD~~yg~~Wh 57 (96)
||-.|.+..+-=++.-...+ .+.+.....|+.|.+.|-++|.+.|+
T Consensus 1 ~M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46666555443344333333 33332457899999999999999998
No 5
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=72.16 E-value=5.1 Score=21.29 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccC
Q 034366 15 VKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIY 52 (96)
Q Consensus 15 ~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~y 52 (96)
+.+++++++..+.-+++.+ .||-..|+++|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K----~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVK----EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcC
Confidence 4578889999999888777 579999999998763
No 6
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=69.15 E-value=1.5 Score=28.30 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceE
Q 034366 11 TDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQ 57 (96)
Q Consensus 11 ~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~Wh 57 (96)
..|-.|.+..+-=++.-...+.+.+.....++.|.+.|-++|.+.|.
T Consensus 6 ~~M~~EI~~av~Fl~~~L~~klp~~~v~~F~~~L~~~L~~~y~~HWy 52 (130)
T 2z15_A 6 SGMQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWY 52 (130)
T ss_dssp CCSHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred chHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34666655444333333333333333467889999999999999993
No 7
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=62.17 E-value=13 Score=18.46 Aligned_cols=32 Identities=25% Similarity=0.135 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcc
Q 034366 15 VKMQVQAMASASQALDLYDVVDSISIATHIKKEFDK 50 (96)
Q Consensus 15 ~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~ 50 (96)
...-+.+.-....-.+++. .+||.+||+..|+
T Consensus 5 kkiweticpt~~~~akkc~----g~iat~ik~~c~k 36 (37)
T 1eci_A 5 KKIWETVCPTVEPWAKKCS----GDIATYIKRECGK 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHTBC----HHHHHHHHHHHHC
T ss_pred HHHHHHhCcchHHHHHHcc----chHHHHHHHHhcc
Confidence 3333444444444445444 7899999998875
No 8
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=49.70 E-value=44 Score=25.40 Aligned_cols=46 Identities=11% Similarity=0.305 Sum_probs=33.4
Q ss_pred HHHHHhhcccCCCceEEEEeC-ccceeEEEccCcEEEEEeCCEEEEEEecCC
Q 034366 42 THIKKEFDKIYGGGWQCVVGS-NFGCYFTHKHGTFIYFSLETLNFLIFKAAI 92 (96)
Q Consensus 42 ~~IK~~lD~~yg~~WhciVG~-~Fgs~vt~~~~~~i~F~~~~~~illfkt~~ 92 (96)
+....++++-|+..|++|.-. ... +++.++-+.+++..|+|||..+
T Consensus 44 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~~~~vvv~R~~d 90 (457)
T 3gzx_A 44 DLYQLELERVFGRSWLMLGHETHIP-----KIGDYLTTYMGEDPVIMVRQKD 90 (457)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHHHHhcCCEEEeEHHHcC-----CCCCeEEEEECCEEEEEEECCC
Confidence 345578888899999988654 331 2455667888999999999754
No 9
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=49.33 E-value=6.8 Score=19.22 Aligned_cols=13 Identities=69% Similarity=0.616 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhcc
Q 034366 38 ISIATHIKKEFDK 50 (96)
Q Consensus 38 ~~iA~~IK~~lD~ 50 (96)
.+||.+||+..|+
T Consensus 22 g~iat~ik~~c~k 34 (34)
T 1eci_B 22 GSIATMIKKKCDK 34 (34)
T ss_dssp TTHHHHHHHHSCC
T ss_pred ccHHHHHHHHhCC
Confidence 5799999998774
No 10
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=46.28 E-value=50 Score=24.55 Aligned_cols=44 Identities=9% Similarity=0.285 Sum_probs=31.5
Q ss_pred HHHhhcccCCCceEEEEeC-ccceeEEEccCcEEEEEeCCEEEEEEecCC
Q 034366 44 IKKEFDKIYGGGWQCVVGS-NFGCYFTHKHGTFIYFSLETLNFLIFKAAI 92 (96)
Q Consensus 44 IK~~lD~~yg~~WhciVG~-~Fgs~vt~~~~~~i~F~~~~~~illfkt~~ 92 (96)
...++++-|...|++|.-. ... +++.++-+.+++..++|||..+
T Consensus 25 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~~ 69 (447)
T 2bmo_A 25 FQHELKTIFARNWLFLTHDSLIP-----SPGDYVKAKMGVDEVIVSRQND 69 (447)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHhhccCCeEEeEHHHCC-----CCCCeEEEEECCeeEEEEECCC
Confidence 3556777888999997543 221 2466777889999999999654
No 11
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=44.66 E-value=55 Score=23.22 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHH-hhhc---C--------CCCHHHHHHHHHHhhcccCCCceEEEEe
Q 034366 11 TDMPVKMQVQAMASASQA-LDLY---D--------VVDSISIATHIKKEFDKIYGGGWQCVVG 61 (96)
Q Consensus 11 ~dM~~~~q~~~~~~~~~a-~~~~---~--------~~~~~~iA~~IK~~lD~~yg~~WhciVG 61 (96)
.+||.+....+++.+.+. ++-. . ..+..++.+.+++.||. +.|.|||=
T Consensus 109 i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeA---GA~~ViiE 168 (251)
T 1qwg_A 109 SDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA---GADYVIIE 168 (251)
T ss_dssp SCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH---TCSEEEEC
T ss_pred ccCCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHHC---CCcEEEEe
Confidence 579999999999988777 2211 1 12347788999999997 78888874
No 12
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=43.99 E-value=22 Score=25.47 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=32.1
Q ss_pred eCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhccc
Q 034366 10 ETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKI 51 (96)
Q Consensus 10 ~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~ 51 (96)
..|++++....|...|..+++.+..- +.+.+||+..|.+-
T Consensus 222 G~~ise~DL~~I~~~a~~v~~L~e~R--~~L~~Yl~srM~~~ 261 (268)
T 3id6_A 222 GADISEDDLSAMRMIANTILDLYNIR--RNLNNYLEGVMKEV 261 (268)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 46889999999999999988877654 68999999998764
No 13
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.74 E-value=36 Score=19.20 Aligned_cols=29 Identities=7% Similarity=-0.109 Sum_probs=23.0
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHhhcccC
Q 034366 23 ASASQALDLYDVVDSISIATHIKKEFDKIY 52 (96)
Q Consensus 23 ~~~~~a~~~~~~~~~~~iA~~IK~~lD~~y 52 (96)
+.|+.||++.+. +....|..|-.+.|..-
T Consensus 34 ~qA~kALKat~~-NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 34 ECVLRAMKKKGE-NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHhCCCCCC
Confidence 478899998875 45788999999988653
No 14
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=43.65 E-value=59 Score=24.26 Aligned_cols=46 Identities=13% Similarity=0.312 Sum_probs=34.4
Q ss_pred HHHHHhhcccCCCceEEEEeC-ccceeEEEccCcEEEEEeCCEEEEEEecCC
Q 034366 42 THIKKEFDKIYGGGWQCVVGS-NFGCYFTHKHGTFIYFSLETLNFLIFKAAI 92 (96)
Q Consensus 42 ~~IK~~lD~~yg~~WhciVG~-~Fgs~vt~~~~~~i~F~~~~~~illfkt~~ 92 (96)
+....++++-|...|++|.-. ... +++.++-+.+++..++|||..+
T Consensus 30 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~d 76 (412)
T 3vca_A 30 EVYALDLQHIFYKQWLYAVPVCQLA-----KAGSYTTLRVGAYEVVIVRSRD 76 (412)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGGC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHHHHhccCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcCC
Confidence 445677888899999997654 331 2467777889999999999754
No 15
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=43.58 E-value=13 Score=23.11 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=25.0
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHhhcccC-CCceEEEEeC
Q 034366 24 SASQALDLYDVVDSISIATHIKKEFDKIY-GGGWQCVVGS 62 (96)
Q Consensus 24 ~~~~a~~~~~~~~~~~iA~~IK~~lD~~y-g~~WhciVG~ 62 (96)
.|+.||..++- |+++.|..-|+..- .+.|.++.++
T Consensus 56 eAr~AL~~~ng----Dl~~AI~~Lleg~~~~~~W~~~~kK 91 (104)
T 1wj7_A 56 ECVIALHDCNG----DVNRAINVLLEGNPDTHSWEMVGKK 91 (104)
T ss_dssp HHHHHHHHHTS----CHHHHHHHHHTCSSSCSSCSSCCCC
T ss_pred HHHHHHHHcCC----CHHHHHHHHHhCCCcCCceeeeccc
Confidence 47788887774 46666777776653 4689998876
No 16
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=41.32 E-value=66 Score=24.15 Aligned_cols=44 Identities=14% Similarity=0.381 Sum_probs=30.9
Q ss_pred HHHhhcccCCCceEEEEeC-ccceeEEEccCcEEEEEeCCEEEEEEecCC
Q 034366 44 IKKEFDKIYGGGWQCVVGS-NFGCYFTHKHGTFIYFSLETLNFLIFKAAI 92 (96)
Q Consensus 44 IK~~lD~~yg~~WhciVG~-~Fgs~vt~~~~~~i~F~~~~~~illfkt~~ 92 (96)
...+++.-|...|++|--. .+. +++.++-+.+++..++|||..+
T Consensus 34 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~g~~vvv~R~~~ 78 (470)
T 2b1x_A 34 HDVERERIFGHAWVFLAHESEIP-----ERGDYVVRYISEDQFIVCRDEG 78 (470)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHhhcCCeEeeeHHHCC-----CCCCeEEEEECCeEEEEEEcCC
Confidence 3456667789999997433 331 2356777889999999999644
No 17
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=41.29 E-value=9.8 Score=22.89 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhcCCCC----HHHHHHHHHHh---hccc-CC
Q 034366 19 VQAMASASQALDLYDVVD----SISIATHIKKE---FDKI-YG 53 (96)
Q Consensus 19 ~~~~~~~~~a~~~~~~~~----~~~iA~~IK~~---lD~~-yg 53 (96)
.+++++..+|++....++ +.++-++|++. ||.+ ||
T Consensus 7 ~~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYG 49 (92)
T 2kzv_A 7 HPLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWG 49 (92)
T ss_dssp SSHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccC
Confidence 355666667776665433 56888888875 7753 55
No 18
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}
Probab=40.58 E-value=9.1 Score=26.05 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEeCccceeEEE
Q 034366 37 SISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTH 70 (96)
Q Consensus 37 ~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~ 70 (96)
..++|+.|...+|..-....+++||.|+|+.+..
T Consensus 129 ~~~~~~d~~~~l~~l~~~~~~ilvGhS~Gg~ia~ 162 (377)
T 3i1i_A 129 FLDVARMQCELIKDMGIARLHAVMGPSAGGMIAQ 162 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCCBSEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEeeEEeeCHhHHHHH
Confidence 4678888887777654456677999999987753
No 19
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=39.70 E-value=73 Score=23.88 Aligned_cols=45 Identities=16% Similarity=0.361 Sum_probs=31.8
Q ss_pred HHHHhhcccCCCceEEEEeC-ccceeEEEccCcEEEEEeCCEEEEEEecCC
Q 034366 43 HIKKEFDKIYGGGWQCVVGS-NFGCYFTHKHGTFIYFSLETLNFLIFKAAI 92 (96)
Q Consensus 43 ~IK~~lD~~yg~~WhciVG~-~Fgs~vt~~~~~~i~F~~~~~~illfkt~~ 92 (96)
....+++.-|...|++|--. ... +++.++-+.+++..|+|||..+
T Consensus 43 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~i~~~~vvv~R~~~ 88 (460)
T 1uli_A 43 LYEQELERIFGRSWLLMGHETQIP-----KAGDFMTNYMGEDPVMVVRQKN 88 (460)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHhhhcCceEEEEHHHCC-----CCCCeEEEEECCeEEEEEEcCC
Confidence 34567778889999987432 221 2456677789999999999744
No 20
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40
Probab=38.00 E-value=14 Score=25.32 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEeCccceeEEE
Q 034366 37 SISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTH 70 (96)
Q Consensus 37 ~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~ 70 (96)
..++|+.|...+|..-....+++||.|+|+.++.
T Consensus 136 ~~~~~~~l~~~l~~l~~~~~~~lvGhS~Gg~ia~ 169 (377)
T 2b61_A 136 VQDIVKVQKALLEHLGISHLKAIIGGSFGGMQAN 169 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEEEChhHHHHH
Confidence 4677888887776654466777999999988763
No 21
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=37.38 E-value=85 Score=23.36 Aligned_cols=46 Identities=15% Similarity=0.426 Sum_probs=34.2
Q ss_pred HHHHHhhcccCCCceEEEEeC-ccceeEEEccCcEEEEEeCCEEEEEEecCC
Q 034366 42 THIKKEFDKIYGGGWQCVVGS-NFGCYFTHKHGTFIYFSLETLNFLIFKAAI 92 (96)
Q Consensus 42 ~~IK~~lD~~yg~~WhciVG~-~Fgs~vt~~~~~~i~F~~~~~~illfkt~~ 92 (96)
+....++++-|...|++|.-. ... +++.++-+.+++..++|||..+
T Consensus 28 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~d 74 (409)
T 3n0q_A 28 EVFQTDLQEIFYKEWLFAIPACELD-----KPGSYVTHQVGNYNVIIVRGAD 74 (409)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHHHHhcCCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcCC
Confidence 445567788899999998654 331 2466777889999999999754
No 22
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=36.93 E-value=86 Score=23.36 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=31.2
Q ss_pred HHHhhcccCCCceEEEEeC-ccceeEEEccCcEEEEEeCCEEEEEEecCC
Q 034366 44 IKKEFDKIYGGGWQCVVGS-NFGCYFTHKHGTFIYFSLETLNFLIFKAAI 92 (96)
Q Consensus 44 IK~~lD~~yg~~WhciVG~-~Fgs~vt~~~~~~i~F~~~~~~illfkt~~ 92 (96)
...+++.-|...|++|.-. ... +++.++-+.+++..|+|||..+
T Consensus 26 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~~ 70 (454)
T 2gbw_A 26 YALEIERIFSRAWLMLGHESLVP-----KPGDFITTYMAEDKVILSHQSD 70 (454)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHhhcCcEEEeEHHHCC-----CCCCeEEEEECCeEEEEEEcCC
Confidence 3456777888999997543 321 2466777889999999999643
No 23
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=35.10 E-value=44 Score=24.21 Aligned_cols=50 Identities=12% Similarity=-0.043 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHHhhh-cCC-------CCHHHHHHHHHHhhcccCCCceEEEEeC
Q 034366 13 MPVKMQVQAMASASQALDL-YDV-------VDSISIATHIKKEFDKIYGGGWQCVVGS 62 (96)
Q Consensus 13 M~~~~q~~~~~~~~~a~~~-~~~-------~~~~~iA~~IK~~lD~~yg~~WhciVG~ 62 (96)
-+.+.|.++.+...++.++ ++. +-..++.+-||+.-...-++..||.-|.
T Consensus 147 ~~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~A~~d~l~iL~~~~~~~~~gViH~FsGs 204 (325)
T 3ipw_A 147 SDKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNKELGYNGCKGVVHCFDGT 204 (325)
T ss_dssp SCHHHHHHHHHHTHHHHHHCTTCCEEEEEESCHHHHHHHHHHTTCTTSCEEECSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCeEEEEeCchHHHHHHHHHhcCCCCCcEEEEECCCC
Confidence 3568899999888888888 642 2247888888887655556788887776
No 24
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=34.99 E-value=46 Score=17.69 Aligned_cols=21 Identities=14% Similarity=0.059 Sum_probs=16.0
Q ss_pred HHHHhhhcCCCCHHHHHHHHH
Q 034366 25 ASQALDLYDVVDSISIATHIK 45 (96)
Q Consensus 25 ~~~a~~~~~~~~~~~iA~~IK 45 (96)
..+++++|...+..+||+++.
T Consensus 20 L~~~v~~~G~~~W~~IA~~~~ 40 (58)
T 2elk_A 20 LIDACETLGLGNWADIADYVG 40 (58)
T ss_dssp HHHHHHHTTTTCHHHHHHHHC
T ss_pred HHHHHHHHCcCCHHHHHHHHC
Confidence 456778888666789998874
No 25
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=34.98 E-value=79 Score=19.42 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=24.9
Q ss_pred CCCceEEEEeCccceeEEEccCcEEE--EEe----CCEEEEEEecCCCCC
Q 034366 52 YGGGWQCVVGSNFGCYFTHKHGTFIY--FSL----ETLNFLIFKAAITPS 95 (96)
Q Consensus 52 yg~~WhciVG~~Fgs~vt~~~~~~i~--F~~----~~~~illfkt~~~~~ 95 (96)
-...|-|.|..+ |+..--....|.. |.. .+.-||+=|..+-||
T Consensus 36 dpskw~Vcvtqs-sr~~~it~e~f~~icr~~srPEReRLIl~~K~~p~ps 84 (110)
T 1k8r_B 36 DASKFIVCVSQS-SRIKLITEEEFKQICFNSSSPERDRLIIVPKEKPCPS 84 (110)
T ss_dssp CTTSEEEEEECS-SSEEECCCC-------------CCCEEEEESSSCCCC
T ss_pred ChhHeEEEEecC-ceEEEecHhHHHHHHhCCCCcchheeEEecCCCCCCC
Confidence 367899999998 4433333344444 333 366788888877775
No 26
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=34.03 E-value=34 Score=19.62 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHhhh---cCCCCHHHHHHH
Q 034366 13 MPVKMQVQAMASASQALDL---YDVVDSISIATH 43 (96)
Q Consensus 13 M~~~~q~~~~~~~~~a~~~---~~~~~~~~iA~~ 43 (96)
|++.-+++|++...+-+++ ++.. ..|||+.
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g~~ps-v~EIa~~ 33 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDGAPVK-TRDIADA 33 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTSCEE-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCcC-HHHHHHH
Confidence 7788889999988888777 3422 3677754
No 27
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=30.77 E-value=46 Score=23.61 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=29.6
Q ss_pred eCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcc
Q 034366 10 ETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDK 50 (96)
Q Consensus 10 ~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~ 50 (96)
..|++++....+.+.|..+++....- +++.+||+..|..
T Consensus 89 G~~ls~~dl~~i~~~~~~v~~L~~~r--~~l~~yl~srM~~ 127 (255)
T 3icx_A 89 GADISEDDLSAMRMIANTILDLYNIR--RNLNNYLEGVMKE 127 (255)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhc
Confidence 36788888888888888888766544 6788888887753
No 28
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=30.33 E-value=1e+02 Score=20.25 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCC
Q 034366 21 AMASASQALDLYDVVDSISIATHIKKEFDKIYGG 54 (96)
Q Consensus 21 ~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~ 54 (96)
..+.+..-.++|+.. .+|-+.+|+.|.+.+++
T Consensus 85 ~tRqVa~YrkKYp~n--~eIe~eyk~~l~qt~~~ 116 (154)
T 4fz4_A 85 YIRQVAELRKKYPGD--NTIEEEYNAHLKQDEGK 116 (154)
T ss_dssp HHHHHHHHHHHSCSC--HHHHHHHHHHTCCCSSS
T ss_pred HHHHHHHHHHhCCCc--hHHHHHHHHHHhhcccc
Confidence 345677778899976 88888888888777655
No 29
>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39
Probab=29.91 E-value=40 Score=19.71 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEeCccceeEE
Q 034366 37 SISIATHIKKEFDKIYGGGWQCVVGSNFGCYFT 69 (96)
Q Consensus 37 ~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt 69 (96)
..+.++.+...+|..-.... .+||.|+|+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~-~lvG~S~Gg~~a 94 (131)
T 2dst_A 63 PEELAHFVAGFAVMMNLGAP-WVLLRGLGLALG 94 (131)
T ss_dssp HHHHHHHHHHHHHHTTCCSC-EEEECGGGGGGH
T ss_pred HHHHHHHHHHHHHHcCCCcc-EEEEEChHHHHH
Confidence 35667777766665433344 478999998765
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=29.76 E-value=63 Score=17.16 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=15.4
Q ss_pred HHHHhhhcCCCCHHHHHHHHH
Q 034366 25 ASQALDLYDVVDSISIATHIK 45 (96)
Q Consensus 25 ~~~a~~~~~~~~~~~iA~~IK 45 (96)
..+|+++|...+..+||+++.
T Consensus 19 L~~~v~~~G~~~W~~Ia~~~~ 39 (60)
T 1x41_A 19 LLEAVMDCGFGNWQDVANQMC 39 (60)
T ss_dssp HHHHHHHTCTTCHHHHHHHHT
T ss_pred HHHHHHHHCcCcHHHHHHHhC
Confidence 346677888656789998874
No 31
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=29.57 E-value=21 Score=23.99 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcc----cCCCceEEEEeCccceeEE
Q 034366 38 ISIATHIKKEFDK----IYGGGWQCVVGSNFGCYFT 69 (96)
Q Consensus 38 ~~iA~~IK~~lD~----~yg~~WhciVG~~Fgs~vt 69 (96)
..+|+++-..+|. ++-+.+=+|.|+||||=-+
T Consensus 33 ~~l~~~~f~~~~p~F~~~~~~g~IlVaG~NFG~GSS 68 (176)
T 3vba_A 33 EELAQFVMTGADPDFPKKVKPGDIIVGGKNFGCGSS 68 (176)
T ss_dssp HHHGGGTTTTTCTTHHHHCCTTCEEEECTTBTBSSC
T ss_pred HHHHHhhCcCCCccHHHhcCCCCEEEeCCCccCCcc
Confidence 4455554444332 4455677888889997433
No 32
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=29.39 E-value=50 Score=23.39 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=30.9
Q ss_pred eCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcc
Q 034366 10 ETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDK 50 (96)
Q Consensus 10 ~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~ 50 (96)
..+++++..+.+.+.|..+++....- +++.+||+..|..
T Consensus 103 G~~ls~~dl~~i~~~~~~v~~L~~~r--~~l~~yl~~rM~~ 141 (260)
T 2ozb_B 103 GQQLSEEELERLEEACDMALELNASK--HRIYEYVESRMSF 141 (260)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 57889999999999998888866644 6788888887753
No 33
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=28.67 E-value=87 Score=17.93 Aligned_cols=15 Identities=20% Similarity=0.036 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhh
Q 034366 17 MQVQAMASASQALDL 31 (96)
Q Consensus 17 ~q~~~~~~~~~a~~~ 31 (96)
+.+++++.+.+|++.
T Consensus 7 ~~~~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 7 LEDMARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777777764
No 34
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=27.45 E-value=27 Score=24.12 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=13.6
Q ss_pred cCCCceEEEEeCcccee
Q 034366 51 IYGGGWQCVVGSNFGCY 67 (96)
Q Consensus 51 ~yg~~WhciVG~~Fgs~ 67 (96)
+|.+..=+|+|+||||=
T Consensus 82 ~~~~~~IlvaG~NfGcG 98 (213)
T 2hcu_A 82 EYREASILITGDNFGAG 98 (213)
T ss_dssp GGTTCCEEEECSSBTCS
T ss_pred hhcCCcEEEecCCCCCC
Confidence 46678888889999974
No 35
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=26.76 E-value=44 Score=18.97 Aligned_cols=23 Identities=9% Similarity=0.306 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhcccCCCceEEEEe
Q 034366 38 ISIATHIKKEFDKIYGGGWQCVVG 61 (96)
Q Consensus 38 ~~iA~~IK~~lD~~yg~~WhciVG 61 (96)
.+++..|++.|-++||.. ||.|-
T Consensus 60 h~i~~~ie~~l~~~~~~~-~vtIh 82 (94)
T 3byp_A 60 HRLCDELERALAQAFPGL-QATIH 82 (94)
T ss_dssp HHHHHHHHHHHHHHSTTE-EEEEE
T ss_pred HHHHHHHHHHHHHHCCCC-EEEEE
Confidence 468889999998899887 88874
No 36
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=26.44 E-value=1.1e+02 Score=18.51 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=28.9
Q ss_pred CCCCHHHH--------HHHHHHHHHHhhhcCCCC-------HHH----HH-HHHHHhhcccCCCceE
Q 034366 11 TDMPVKMQ--------VQAMASASQALDLYDVVD-------SIS----IA-THIKKEFDKIYGGGWQ 57 (96)
Q Consensus 11 ~dM~~~~q--------~~~~~~~~~a~~~~~~~~-------~~~----iA-~~IK~~lD~~yg~~Wh 57 (96)
.|+|+..+ +--.+....|+++|...+ -.+ +| ..+|+...+.-.+.|.
T Consensus 27 ~dLP~sVr~~LP~hAQ~Iy~kAfNsA~eeY~d~~~r~~~~~rEe~AhrvAWaAVK~~Y~K~~~g~W~ 93 (96)
T 1sg7_A 27 SDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAVKHEYAKGDDDKWH 93 (96)
T ss_dssp TTSCHHHHTTCCSHHHHHHHHHHHHHHHHCCSSSSSSCHHHHHHHHHHHHHHHHHHHEEECSSSCEE
T ss_pred hhCCHHHHHhCCHHHHHHHHHHHHHHHHHhcChhhccccchhHHHHHHHHHHHHHHHheeCCCCcee
Confidence 45555555 444455577788887510 123 34 6689999886558885
No 37
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=25.33 E-value=74 Score=18.17 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=15.7
Q ss_pred HHHHHhhhcCCCCHHHHHHHHH
Q 034366 24 SASQALDLYDVVDSISIATHIK 45 (96)
Q Consensus 24 ~~~~a~~~~~~~~~~~iA~~IK 45 (96)
...+|+++|. .+..+||+++.
T Consensus 28 ~Ll~~v~~~G-~~W~~IA~~v~ 48 (79)
T 2yus_A 28 LLLEALEMYK-DDWNKVSEHVG 48 (79)
T ss_dssp HHHHHHHHSS-SCHHHHHHHHS
T ss_pred HHHHHHHHhC-CCHHHHHHHcC
Confidence 4456788888 56789998874
No 38
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=25.09 E-value=28 Score=23.08 Aligned_cols=16 Identities=44% Similarity=0.646 Sum_probs=12.6
Q ss_pred CCCceEEEEeCcccee
Q 034366 52 YGGGWQCVVGSNFGCY 67 (96)
Q Consensus 52 yg~~WhciVG~~Fgs~ 67 (96)
+.+.|=+|.|++|||=
T Consensus 49 ~~~~~iivaG~nfG~G 64 (170)
T 2pkp_A 49 VKEGDVIVAGENFGCG 64 (170)
T ss_dssp CCTTCEEEECTTBTBS
T ss_pred CCCCCEEEecCCCCCC
Confidence 4567888888999974
No 39
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=24.93 E-value=80 Score=22.48 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcc
Q 034366 13 MPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDK 50 (96)
Q Consensus 13 M~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~ 50 (96)
|-..+.+.++++|.+.-+.|... .++|-.+.+.||-
T Consensus 286 mrryleqrivecalklqdrygir--edvalclarafdg 321 (380)
T 3m6z_A 286 MRRYLEQRIVECALKLQDRYGIR--EDVALCLARAFDG 321 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhhhhhccH--HHHHHHHHHHhCC
Confidence 34557789999999999999977 7999999888884
No 40
>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40
Probab=24.69 E-value=32 Score=23.30 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEeCccceeEEE
Q 034366 37 SISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTH 70 (96)
Q Consensus 37 ~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~ 70 (96)
..++|+.|...++..-.....++||.|+|+.++.
T Consensus 127 ~~~~~~dl~~~l~~l~~~~~~~lvGhS~Gg~ia~ 160 (366)
T 2pl5_A 127 IQDMVKAQKLLVESLGIEKLFCVAGGSMGGMQAL 160 (366)
T ss_dssp HHHHHHHHHHHHHHTTCSSEEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCceEEEEEEeCccHHHHH
Confidence 4677777777776543344446899999988753
No 41
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=23.52 E-value=36 Score=23.66 Aligned_cols=14 Identities=36% Similarity=0.385 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhcc
Q 034366 37 SISIATHIKKEFDK 50 (96)
Q Consensus 37 ~~~iA~~IK~~lD~ 50 (96)
.++||..||+-||.
T Consensus 124 IKeIAsaIKklLDA 137 (213)
T 3ajm_A 124 IKDIASAIKELLDT 137 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999995
No 42
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Probab=23.33 E-value=42 Score=21.31 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEeCccceeEEE
Q 034366 37 SISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTH 70 (96)
Q Consensus 37 ~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~ 70 (96)
..+.|+.+...++..-+..=-++||.|+|+.+..
T Consensus 63 ~~~~~~~~~~~l~~l~~~~~~~lvGhS~Gg~ia~ 96 (267)
T 3sty_A 63 FSDYLSPLMEFMASLPANEKIILVGHALGGLAIS 96 (267)
T ss_dssp HHHHHHHHHHHHHTSCTTSCEEEEEETTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEcHHHHHHH
Confidence 5788888998888863233357899999987654
No 43
>1qto_A Bleomycin-binding protein; arm-exchange, antibiotic inhibitor; 1.50A {Streptomyces verticillus} SCOP: d.32.1.2 PDB: 1jie_A* 1jif_A
Probab=22.84 E-value=1.1e+02 Score=17.54 Aligned_cols=18 Identities=11% Similarity=0.109 Sum_probs=11.2
Q ss_pred CcEEEEEeCCEEEEEEec
Q 034366 73 GTFIYFSLETLNFLIFKA 90 (96)
Q Consensus 73 ~~~i~F~~~~~~illfkt 90 (96)
..+.++..++..+.|+..
T Consensus 36 ~~~~~~~~~~~~l~l~~~ 53 (122)
T 1qto_A 36 RDFAGVRRGDIRLHISRT 53 (122)
T ss_dssp SSEEEEEETTEEEEEEEC
T ss_pred CCEEEEEECCEEEEEEcC
Confidence 345666677766666654
No 44
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=22.75 E-value=1e+02 Score=17.77 Aligned_cols=35 Identities=6% Similarity=-0.082 Sum_probs=21.8
Q ss_pred EeCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q 034366 9 KETDMPVKMQVQAMASASQALDLYDVVDSISIATHI 44 (96)
Q Consensus 9 ~~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~I 44 (96)
....|+.++...+-+..+++.+..+.. .+++|+.+
T Consensus 17 ~~~~M~~~~~~~ig~~lr~~R~~~glt-q~elA~~~ 51 (99)
T 3g5g_A 17 RGSHMESFLLSKVSFVIKKIRLEKGMT-QEDLAYKS 51 (99)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTTCC-HHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCC-HHHHHHHH
Confidence 456788888888888888877766632 26788654
No 45
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=22.62 E-value=1.4e+02 Score=18.35 Aligned_cols=33 Identities=3% Similarity=0.039 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCC--HHHHHHH
Q 034366 11 TDMPVKMQVQAMASASQALDLYDVVD--SISIATH 43 (96)
Q Consensus 11 ~dM~~~~q~~~~~~~~~a~~~~~~~~--~~~iA~~ 43 (96)
..|+++.++.|++.|.+.+.+.+-+. .++||+.
T Consensus 7 ~~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~ 41 (189)
T 3vp5_A 7 FSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKA 41 (189)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHH
Confidence 35788999999999999999876432 4677754
No 46
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=22.22 E-value=1.1e+02 Score=17.03 Aligned_cols=34 Identities=18% Similarity=0.015 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcc
Q 034366 13 MPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDK 50 (96)
Q Consensus 13 M~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~ 50 (96)
|+.++..-..++|.-|--.+.-+ =|..|-++|+.
T Consensus 1 M~~~l~~lLAe~AL~~TG~HcH~----EA~tIA~~L~~ 34 (61)
T 3ph0_C 1 MNVQLKKQLAELALAGTGHHCHQ----EAASIADWLAQ 34 (61)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCHH----HHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHccchHHH----HHHHHHHHHHh
Confidence 77888888888888887766632 34444444443
No 47
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}
Probab=21.94 E-value=2e+02 Score=19.74 Aligned_cols=63 Identities=5% Similarity=-0.045 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceEEEEe---CccceeEEEcc-CcEEEEEe
Q 034366 14 PVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVG---SNFGCYFTHKH-GTFIYFSL 80 (96)
Q Consensus 14 ~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~WhciVG---~~Fgs~vt~~~-~~~i~F~~ 80 (96)
+++.+..++++++.|-...+. .++++.+++-|++. ...+=..++ .-++|.+.+-. +.-+||.+
T Consensus 64 ~~~~r~~lv~m~~~a~~~~d~---~~l~~e~~~ll~~~-~~~~LAT~~~dG~P~~s~v~~~~~~g~~~~~~ 130 (251)
T 3swj_A 64 ENTIKDTIISLCMSAKSEQNF---SGVEKELNEFMLSF-NSVALATLNANGEVVCSYAPFVSTQWGNYIYI 130 (251)
T ss_dssp TTTHHHHHHHHHHHHSSSCCC---SHHHHHHHHHHHTC-SEEEEEEECTTSCEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhccccCCh---hhHHHHHHHHHhhC-CEEEEEEECCCCCEEEEEEEEEEECCEEEEEE
Confidence 467888999999988886554 47888888888754 344445553 34444444322 23344544
No 48
>3uh9_A Metallothiol transferase FOSB 2; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol; HET: MSE; 1.60A {Bacillus anthracis}
Probab=21.92 E-value=1.3e+02 Score=17.58 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=16.8
Q ss_pred EccCcEEEEEeCCEEEEEEecCCC
Q 034366 70 HKHGTFIYFSLETLNFLIFKAAIT 93 (96)
Q Consensus 70 ~~~~~~i~F~~~~~~illfkt~~~ 93 (96)
.+.....+|..++..+.++..+..
T Consensus 32 ~~~~~~~~~~~~~~~l~l~~~~~~ 55 (145)
T 3uh9_A 32 VKGRKLAYFDLNGLWIALNVEEDI 55 (145)
T ss_dssp EECSSEEEEEETTEEEEEEECCSC
T ss_pred ecCCcEEEEEeCCeEEEEecCCCC
Confidence 335567778888888888877543
No 49
>1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS, GAP, signal transduction, cancer, growth regulation, GTP hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2
Probab=21.59 E-value=34 Score=24.62 Aligned_cols=39 Identities=3% Similarity=-0.066 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceE
Q 034366 18 QVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQ 57 (96)
Q Consensus 18 q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~Wh 57 (96)
-+.+++.....++.++.+ ++.+++.|++.+.++|+....
T Consensus 146 ~~~~~~~I~~s~~~~P~~-lR~i~~~l~~~~~~kfp~~~~ 184 (333)
T 1nf1_A 146 TEKFFHAIISSSSEFPPQ-LRSVCHCLYQVVSQRFPQNSI 184 (333)
T ss_dssp HHHHHHHHHHTTTTCCTT-HHHHHHHHHHHHTTTCCSSCH
T ss_pred HHHHHHHHHHhHHhCCHH-HHHHHHHHHHHHHHHCCCchH
Confidence 345556666666666753 689999999999999987653
No 50
>1xrk_A Bleomycin resistance protein; arm exchange, ligand binding protein, thermostable mutant, antibiotic inhibitor; HET: BLM; 1.50A {Streptoalloteichus hindustanus} SCOP: d.32.1.2 PDB: 2zhp_A* 1byl_A
Probab=21.53 E-value=1.2e+02 Score=17.25 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=12.9
Q ss_pred CcEEEEEeCCEEEEEEecCC
Q 034366 73 GTFIYFSLETLNFLIFKAAI 92 (96)
Q Consensus 73 ~~~i~F~~~~~~illfkt~~ 92 (96)
..+.++..|+..+.|+..+.
T Consensus 36 ~~~~~~~~~~~~l~l~~~~~ 55 (124)
T 1xrk_A 36 DDFAGVVRDDVTLFISAVQD 55 (124)
T ss_dssp SSEEEEEETTEEEEEEECSC
T ss_pred CCEEEEEECCEEEEEEcCCC
Confidence 34566777777777776543
No 51
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=21.51 E-value=1.2e+02 Score=17.18 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=18.9
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHH
Q 034366 4 GKASIKETDMPVKMQVQAMASASQ 27 (96)
Q Consensus 4 ~~~~I~~~dM~~~~q~~~~~~~~~ 27 (96)
.+.+|+..|.+++....+...|.+
T Consensus 28 aklViiA~D~~~~~~~~i~~lc~~ 51 (82)
T 3v7e_A 28 VKEVVVAKDADPILTSSVVSLAED 51 (82)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHH
T ss_pred eeEEEEeCCCCHHHHHHHHHHHHH
Confidence 356789999999888887777654
No 52
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=21.50 E-value=67 Score=19.21 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=18.7
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHhhcccCCC
Q 034366 25 ASQALDLYDVVDSISIATHIKKEFDKIYGG 54 (96)
Q Consensus 25 ~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~ 54 (96)
+..|+...+ +...+|+.|+.-|...|+.
T Consensus 37 Iv~av~~~d--~~~~LA~~Iq~If~~SFee 64 (90)
T 1u84_A 37 VLQAVYETE--DARTLAARIQSIYEFAFDE 64 (90)
T ss_dssp HHHHHTTCS--CHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHHhc
Confidence 344554444 3478999999888877754
No 53
>3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A*
Probab=21.47 E-value=48 Score=21.08 Aligned_cols=34 Identities=6% Similarity=0.086 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEeCccceeEEE
Q 034366 36 DSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTH 70 (96)
Q Consensus 36 ~~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~ 70 (96)
+..+.|+.+...++..-+.. -++||.|+|+.+..
T Consensus 68 ~~~~~~~~~~~~l~~~~~~~-~~lvG~S~Gg~ia~ 101 (267)
T 3fla_A 68 SIGGLTNRLLEVLRPFGDRP-LALFGHSMGAIIGY 101 (267)
T ss_dssp SHHHHHHHHHHHTGGGTTSC-EEEEEETHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCc-eEEEEeChhHHHHH
Confidence 35788888988888773333 46889999988754
No 54
>4b6i_A SMA2266; signaling protein; 1.95A {Serratia marcescens}
Probab=21.04 E-value=1.4e+02 Score=18.15 Aligned_cols=41 Identities=17% Similarity=-0.039 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHhhhcCC---CCHHHHHHHHHHhhcccCCCc
Q 034366 14 PVKMQVQAMASASQALDLYDV---VDSISIATHIKKEFDKIYGGG 55 (96)
Q Consensus 14 ~~~~q~~~~~~~~~a~~~~~~---~~~~~iA~~IK~~lD~~yg~~ 55 (96)
+++...+|...+. |+.+... |.+.++=+.|++.|.+.|+++
T Consensus 31 ~~~~~~DA~~Sa~-A~lE~~~y~~Ea~~~~~~Li~kyl~~~y~~~ 74 (102)
T 4b6i_A 31 SERTKQDAFRSAS-AYLELSKLPMDAFEQGEKLAEQYANKNSQGS 74 (102)
T ss_dssp CHHHHHHHHHHHH-HHHHHCCSCHHHHHHHHHHHHHHHTTCCCCS
T ss_pred ChHHHHHHHHHHH-HHHHHhcCchhhhHHHHHHHHHHHHhccCCC
Confidence 5667777765554 4444442 334677788999999999886
No 55
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=20.92 E-value=1.1e+02 Score=18.94 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHhhcccC
Q 034366 36 DSISIATHIKKEFDKIY 52 (96)
Q Consensus 36 ~~~~iA~~IK~~lD~~y 52 (96)
|-++||..||++|-...
T Consensus 28 DTk~I~~~ikewL~~~~ 44 (111)
T 1wh8_A 28 DTYSITKRVKEVLTDNN 44 (111)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 34899999999997653
No 56
>4hfk_B Putative uncharacterized protein; amidase, hydrolase; 2.10A {Enterobacter cloacae}
Probab=20.40 E-value=1.5e+02 Score=18.18 Aligned_cols=41 Identities=20% Similarity=0.041 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHHhhhcCC---CCHHHHHHHHHHhhcccCCCc
Q 034366 14 PVKMQVQAMASASQALDLYDV---VDSISIATHIKKEFDKIYGGG 55 (96)
Q Consensus 14 ~~~~q~~~~~~~~~a~~~~~~---~~~~~iA~~IK~~lD~~yg~~ 55 (96)
+.+..++|...|. |+.++.. |...++=+-|++.|.++||+.
T Consensus 30 ~~~~~~DA~sSas-A~lE~~~yd~Ea~~~~~~Li~kyLa~~y~~~ 73 (105)
T 4hfk_B 30 SKSLKEDADASAA-AWLEASNLPAENFEKADEVIVSLLKQKVGGT 73 (105)
T ss_dssp CHHHHHHHHHHHH-HHHHHCCSCHHHHHHHHHHHHHHHTSCCBCS
T ss_pred ChhhhHHHHHHHH-HHHHHHhCCHHHhHHHHHHHHHHHccccCCC
Confidence 3455666655444 4444553 324567788999999999875
No 57
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=20.11 E-value=82 Score=23.67 Aligned_cols=27 Identities=7% Similarity=0.313 Sum_probs=16.9
Q ss_pred HHHHHHHhhcccCCCceEEEEeCccceeE
Q 034366 40 IATHIKKEFDKIYGGGWQCVVGSNFGCYF 68 (96)
Q Consensus 40 iA~~IK~~lD~~yg~~WhciVG~~Fgs~v 68 (96)
++++||+.+... ...| +++|-|||..+
T Consensus 115 fi~~~k~~~~~~-~~pw-I~~GGSY~G~L 141 (472)
T 4ebb_A 115 LLRALRRDLGAQ-DAPA-IAFGGSYGGML 141 (472)
T ss_dssp HHHHHHHHTTCT-TCCE-EEEEETHHHHH
T ss_pred HHHHHHhhcCCC-CCCE-EEEccCccchh
Confidence 345555555332 3568 88999998654
No 58
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=20.02 E-value=1.3e+02 Score=17.03 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=21.7
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHhhhc
Q 034366 6 ASIKETDMPVKMQVQAMASASQALDLY 32 (96)
Q Consensus 6 ~~I~~~dM~~~~q~~~~~~~~~a~~~~ 32 (96)
.-|...|++++..+.+++.....+.+.
T Consensus 49 m~Il~P~l~ee~~~~~vek~~~~i~~~ 75 (77)
T 3zzp_A 49 NIVLNPNLDQSQLQNEKEIIQRALENY 75 (77)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 356788999999999998888877653
Done!