BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034369
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V31|A Chain A, Structure Of First Catalytic Cysteine Half-Domain Of
Mouse Ubiquitin-Activating Enzyme
Length = 112
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 39 GLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRPGSKRVSGKWT 95
G+ T +EA+ HGFETG+ + F + M I + GC+P +V G +T
Sbjct: 30 GVVTCLDEAR-----HGFETGDFVSFSEVQGM------IQLN-GCQPMEIKVLGPYT 74
>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase
In Yeast
pdb|2JD5|A Chain A, Sky1p Bound To Npl3p-Derived Substrate Peptide
pdb|2JD5|B Chain B, Sky1p Bound To Npl3p-Derived Substrate Peptide
Length = 373
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 3 LHNKSNNSNSIEVIFDSSLNLEQTHLKE-----GYDEGYTHGLATRKEEAKDVGLKHGFE 57
+H N + I DS NL Q + + YDE YT+ + TR+ + +V L +
Sbjct: 154 IHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWG 213
Query: 58 TGEEL 62
G ++
Sbjct: 214 CGADI 218
>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With
Bound Adp
pdb|1Q8Y|B Chain B, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With
Bound Adp
pdb|1Q8Z|A Chain A, The Apoenzyme Structure Of The Yeast Sr Protein Kinase,
Sky1p
pdb|1Q8Z|B Chain B, The Apoenzyme Structure Of The Yeast Sr Protein Kinase,
Sky1p
pdb|1Q97|A Chain A, The Structure Of The Saccharomyces Cerevisiae Sr Protein
Kinase, Sky1p, With Bound Atp
pdb|1Q97|B Chain B, The Structure Of The Saccharomyces Cerevisiae Sr Protein
Kinase, Sky1p, With Bound Atp
pdb|1Q99|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Sr
Protein Kinsae, Sky1p, Complexed With The
Non-Hydrolyzable Atp Analogue, Amp-Pnp
pdb|1Q99|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Sr
Protein Kinsae, Sky1p, Complexed With The
Non-Hydrolyzable Atp Analogue, Amp-Pnp
Length = 373
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 3 LHNKSNNSNSIEVIFDSSLNLEQTHLKE-----GYDEGYTHGLATRKEEAKDVGLKHGFE 57
+H N + I DS NL Q + + YDE YT+ + TR+ + +V L +
Sbjct: 154 IHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWG 213
Query: 58 TGEEL 62
G ++
Sbjct: 214 CGADI 218
>pdb|1H3J|A Chain A, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
pdb|1H3J|B Chain B, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
Length = 342
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 39 GLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRPGSKRV 90
GL E + VG+ HG G+ + F AV MS PGS R+
Sbjct: 93 GLTDTVEALRAVGINHGVSFGDLIQFATAVGMSNC-----------PGSPRL 133
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 39 GLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRPGSKRV 90
GL E + VG+ HG G+ + F AV MS PGS R+
Sbjct: 94 GLTDTVEALRAVGINHGVSFGDLIQFATAVGMSNC-----------PGSPRL 134
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 39 GLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRPGSKRV 90
GL E + VG+ HG G+ + F AV MS PGS R+
Sbjct: 94 GLTDTVEALRAVGINHGVSFGDLIQFATAVGMSNC-----------PGSPRL 134
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 39 GLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRPGSKRV 90
GL E + VG+ HG G+ + F AV MS PGS R+
Sbjct: 94 GLTDTVEALRAVGINHGVSFGDLIQFAAAVGMSNC-----------PGSPRL 134
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 39 GLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRPGSKRV 90
GL E + VG+ HG G+ + F AV MS PGS R+
Sbjct: 95 GLTDTIEALRAVGINHGVSFGDLIQFATAVGMSNC-----------PGSPRL 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,051,401
Number of Sequences: 62578
Number of extensions: 110004
Number of successful extensions: 128
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 9
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)