Query 034369
Match_columns 96
No_of_seqs 103 out of 174
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 12:42:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4595 Uncharacterized conser 99.9 1.2E-24 2.7E-29 156.1 9.3 76 9-85 2-77 (139)
2 PF09811 Yae1_N: Essential pro 99.4 8.2E-13 1.8E-17 76.4 4.4 39 31-69 1-39 (39)
3 PRK13386 fliH flagellar assemb 98.3 3.5E-06 7.7E-11 64.4 7.5 34 39-72 59-92 (236)
4 PRK13386 fliH flagellar assemb 98.2 6.6E-06 1.4E-10 62.9 7.5 42 29-70 45-86 (236)
5 PRK05687 fliH flagellar assemb 98.2 1.1E-05 2.3E-10 61.1 7.7 42 26-67 63-104 (246)
6 KOG4774 Uncharacterized conser 98.1 6.8E-06 1.5E-10 61.8 5.9 59 19-77 33-91 (190)
7 PF09811 Yae1_N: Essential pro 98.0 2E-05 4.4E-10 45.3 5.3 37 28-64 2-38 (39)
8 PRK05687 fliH flagellar assemb 98.0 6.4E-05 1.4E-09 56.9 9.2 46 18-63 59-104 (246)
9 KOG4595 Uncharacterized conser 97.2 0.0012 2.7E-08 47.9 5.7 42 30-71 19-60 (139)
10 COG1317 FliH Flagellar biosynt 97.0 0.0065 1.4E-07 46.6 8.6 48 26-76 54-101 (234)
11 KOG4774 Uncharacterized conser 95.4 0.077 1.7E-06 40.2 6.7 43 33-75 43-86 (190)
12 PRK09956 hypothetical protein; 95.1 0.062 1.3E-06 42.6 5.9 33 20-52 243-275 (308)
13 COG1317 FliH Flagellar biosynt 94.2 0.5 1.1E-05 36.3 8.7 39 21-59 53-91 (234)
14 PRK06669 fliH flagellar assemb 92.3 0.21 4.6E-06 38.5 4.1 22 27-48 115-136 (281)
15 PRK06937 type III secretion sy 88.5 2.1 4.5E-05 31.6 6.3 26 26-51 52-77 (204)
16 TIGR03825 FliH_bacil flagellar 88.0 0.84 1.8E-05 34.9 4.1 20 28-47 86-105 (255)
17 COG5464 Uncharacterized conser 87.5 1.3 2.7E-05 35.5 4.9 33 23-55 212-246 (289)
18 PRK09956 hypothetical protein; 80.0 5.9 0.00013 31.4 5.8 19 29-47 248-266 (308)
19 PRK06328 type III secretion sy 77.7 2.6 5.7E-05 32.0 3.0 17 26-42 55-71 (223)
20 PRK09098 type III secretion sy 77.0 11 0.00024 28.9 6.4 39 19-57 65-103 (233)
21 TIGR03825 FliH_bacil flagellar 76.9 6 0.00013 30.2 4.9 27 33-59 83-109 (255)
22 PRK06937 type III secretion sy 76.6 16 0.00034 27.0 6.9 26 33-58 51-76 (204)
23 PRK06669 fliH flagellar assemb 75.6 17 0.00037 27.9 7.1 14 42-55 122-135 (281)
24 TIGR02499 HrpE_YscL_not type I 71.4 23 0.00049 24.5 6.4 34 19-52 28-61 (166)
25 PF06635 NolV: Nodulation prot 67.1 36 0.00078 26.3 7.1 31 20-50 46-76 (207)
26 TIGR02499 HrpE_YscL_not type I 64.2 8.2 0.00018 26.7 2.9 10 43-52 44-53 (166)
27 PF05570 DUF765: Circovirus pr 57.8 5.8 0.00013 21.6 0.9 11 85-95 19-29 (29)
28 PRK15322 invasion protein OrgB 53.1 26 0.00057 27.2 4.2 23 22-44 34-56 (210)
29 PF12644 DUF3782: Protein of u 48.5 39 0.00085 20.2 3.7 24 17-40 36-59 (64)
30 PRK09098 type III secretion sy 44.4 93 0.002 23.8 6.0 32 27-59 66-97 (233)
31 PF10911 DUF2717: Protein of u 37.7 38 0.00083 22.5 2.6 21 40-60 45-65 (77)
32 PF14314 Methyltrans_Mon: Viru 32.8 31 0.00068 30.8 2.0 36 52-88 14-49 (675)
33 KOG0121 Nuclear cap-binding pr 30.9 15 0.00033 27.1 -0.2 12 41-52 113-124 (153)
34 COG5464 Uncharacterized conser 29.2 83 0.0018 25.3 3.7 28 32-59 217-246 (289)
35 cd07667 BAR_SNX30 The Bin/Amph 28.7 44 0.00096 26.1 2.1 16 61-76 223-238 (240)
36 PHA00438 hypothetical protein 28.1 61 0.0013 21.7 2.4 21 40-60 45-65 (81)
37 PF05315 ICEA: ICEA Protein; 27.4 47 0.001 26.1 1.9 16 44-59 209-224 (230)
38 cd07628 BAR_Atg24p The Bin/Amp 21.6 84 0.0018 22.9 2.3 18 59-76 166-183 (185)
39 TIGR01111 mtrA N5-methyltetrah 21.4 4.2E+02 0.0091 21.0 6.5 37 21-57 196-232 (238)
40 PF05674 DUF816: Baculovirus p 21.1 63 0.0014 24.4 1.5 43 44-90 77-119 (171)
No 1
>KOG4595 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=1.2e-24 Score=156.14 Aligned_cols=76 Identities=34% Similarity=0.534 Sum_probs=68.8
Q ss_pred CCCCchhhhHhhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 034369 9 NSNSIEVIFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRP 85 (96)
Q Consensus 9 ~~~d~dD~FD~il~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~~W~~~l~~~~p~~~~ 85 (96)
++-+++|+||+|++|||++|++||+||+++|.++|+.|||++|+++||++|.+||+|+||+.+|.++++ .+|..++
T Consensus 2 ~sg~~~d~fD~Iv~lEE~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~Gc~~l~~~~lh-s~~~~ks 77 (139)
T KOG4595|consen 2 PSGDINDDFDDIVLLEEKEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILGCVVLWQQLLH-SPKTRKS 77 (139)
T ss_pred CcchhHhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCchhcC
Confidence 456799999999999999999999999999999999999999999999999999999999999999653 4444444
No 2
>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1. The exact function has not been determined.
Probab=99.37 E-value=8.2e-13 Score=76.43 Aligned_cols=39 Identities=41% Similarity=0.753 Sum_probs=37.8
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034369 31 GYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVS 69 (96)
Q Consensus 31 GY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~ 69 (96)
||+||+.+|+++|++||++.|+++||+++.++|+|+|++
T Consensus 1 GY~eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G~~ 39 (39)
T PF09811_consen 1 GYREGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKGFA 39 (39)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 799999999999999999999999999999999999975
No 3
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=98.28 E-value=3.5e-06 Score=64.35 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=13.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034369 39 GLATRKEEAKDVGLKHGFETGEELGFYKAVSMSG 72 (96)
Q Consensus 39 G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~~W 72 (96)
|.+.|+.+|++-|++.|++.|.+-|+-.|...++
T Consensus 59 G~~~G~~~G~~~G~~~G~~~G~~~G~~~g~~~~~ 92 (236)
T PRK13386 59 GLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQSIR 92 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444
No 4
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=98.20 E-value=6.6e-06 Score=62.86 Aligned_cols=42 Identities=26% Similarity=0.405 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034369 29 KEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSM 70 (96)
Q Consensus 29 ~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~ 70 (96)
++||++|+.+|..+|+.+|++-|++.|++-|.+-|+-.|...
T Consensus 45 ~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~ 86 (236)
T PRK13386 45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIE 86 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555555555555555555555544
No 5
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=98.15 E-value=1.1e-05 Score=61.09 Aligned_cols=42 Identities=24% Similarity=0.476 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034369 26 THLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKA 67 (96)
Q Consensus 26 ~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G 67 (96)
..+++||++|+.+|.++|+.+|++-|++.|++.|.+-|.-.|
T Consensus 63 ~~~~~a~~eG~~~G~~~G~~~G~~~G~~~G~~~G~~qg~~e~ 104 (246)
T PRK05687 63 AIRQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEG 104 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555554443
No 6
>KOG4774 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=6.8e-06 Score=61.82 Aligned_cols=59 Identities=27% Similarity=0.354 Sum_probs=53.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 034369 19 SSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFI 77 (96)
Q Consensus 19 ~il~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~~W~~~l~ 77 (96)
++..++|...++||.+|+-.|+++-.+||+..||.+|.++|...|..+|.+..-++.+.
T Consensus 33 elq~l~e~HSk~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsall~~f~ 91 (190)
T KOG4774|consen 33 ELQSLMERHSKEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSALLSWFH 91 (190)
T ss_pred HHHHHHHHhhhcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45678899999999999999999999999999999999999999999998877766554
No 7
>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1. The exact function has not been determined.
Probab=98.02 E-value=2e-05 Score=45.33 Aligned_cols=37 Identities=35% Similarity=0.628 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034369 28 LKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGF 64 (96)
Q Consensus 28 ~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGf 64 (96)
|++|+++|.++|...|+.+|++-|++.|++++...|+
T Consensus 2 Y~eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G~ 38 (39)
T PF09811_consen 2 YREGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKGF 38 (39)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6788888888888888888888888888888887764
No 8
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=98.00 E-value=6.4e-05 Score=56.85 Aligned_cols=46 Identities=28% Similarity=0.424 Sum_probs=31.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q 034369 18 DSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELG 63 (96)
Q Consensus 18 D~il~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElG 63 (96)
+.+-..-+.-|++||++|+++|..+||.+|++-|++.|++-|.+-|
T Consensus 59 ~~~e~~~~~a~~eG~~~G~~~G~~~G~~~G~~~G~~~G~~qg~~e~ 104 (246)
T PRK05687 59 EELEAIRQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEG 104 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777777777777777777777665544
No 9
>KOG4595 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0012 Score=47.87 Aligned_cols=42 Identities=26% Similarity=0.464 Sum_probs=23.8
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034369 30 EGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMS 71 (96)
Q Consensus 30 eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~~ 71 (96)
.=|++||.+|.+.|...|++-|++-|.+.|-++|-..|++.-
T Consensus 19 ~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~G 60 (139)
T KOG4595|consen 19 KEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILG 60 (139)
T ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556655555555555555555555555555555555555
No 10
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.99 E-value=0.0065 Score=46.61 Aligned_cols=48 Identities=29% Similarity=0.412 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034369 26 THLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLF 76 (96)
Q Consensus 26 ~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~~W~~~l 76 (96)
.-..+++++++.+|...||.+|++.|++.||+.|.+.|. +..-|..++
T Consensus 54 ~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~~---~~e~~~~li 101 (234)
T COG1317 54 ESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGR---VLERLAKLI 101 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 345567888888888888999999999999999988887 556665543
No 11
>KOG4774 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.077 Score=40.22 Aligned_cols=43 Identities=30% Similarity=0.525 Sum_probs=38.9
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 034369 33 DEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMS-GTRL 75 (96)
Q Consensus 33 ~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~~-W~~~ 75 (96)
.+||++|..+|..+=.|-|+-.||..|.++||-.|++.- ..++
T Consensus 43 k~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsal 86 (190)
T KOG4774|consen 43 KEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSAL 86 (190)
T ss_pred hcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999987 4443
No 12
>PRK09956 hypothetical protein; Provisional
Probab=95.14 E-value=0.062 Score=42.56 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 034369 20 SLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGL 52 (96)
Q Consensus 20 il~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~ 52 (96)
+....|+..++|.++|..+|++.|.+||++-+.
T Consensus 243 iMTiAe~l~qeG~e~G~q~G~~eG~qeG~~e~~ 275 (308)
T PRK09956 243 LMTIAERLRQEGHQIGWQEGKLEGLQEGMHEQA 275 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888777777666555544433
No 13
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.24 E-value=0.5 Score=36.26 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 034369 21 LNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETG 59 (96)
Q Consensus 21 l~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g 59 (96)
+....+-.+++|++|..+|.+.|+.+|+.-|++.|.+.+
T Consensus 53 ~~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~ 91 (234)
T COG1317 53 LESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEG 91 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555443
No 14
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=92.31 E-value=0.21 Score=38.50 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhHHhHHHHHH
Q 034369 27 HLKEGYDEGYTHGLATRKEEAK 48 (96)
Q Consensus 27 ~~~eGY~EG~~~G~~~G~~EG~ 48 (96)
.+++||++||.+|..+|+.+|.
T Consensus 115 ~~~~a~~eGy~eG~~~g~~e~~ 136 (281)
T PRK06669 115 LIEEAKAEGYEEGYEKGREEGL 136 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444
No 15
>PRK06937 type III secretion system protein; Reviewed
Probab=88.53 E-value=2.1 Score=31.64 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHH
Q 034369 26 THLKEGYDEGYTHGLATRKEEAKDVG 51 (96)
Q Consensus 26 ~~~~eGY~EG~~~G~~~G~~EG~~~G 51 (96)
+-|++++++||++|..+|..|..+.-
T Consensus 52 ~~~e~~~~~Gy~~G~~~a~~e~~e~l 77 (204)
T PRK06937 52 EVYEQQKQLGYQAGLDEARTEQAELI 77 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444333
No 16
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=87.96 E-value=0.84 Score=34.89 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhHHhHHHHH
Q 034369 28 LKEGYDEGYTHGLATRKEEA 47 (96)
Q Consensus 28 ~~eGY~EG~~~G~~~G~~EG 47 (96)
++++.++||.+|..+|+.||
T Consensus 86 ~e~A~~eGy~eG~~~G~~e~ 105 (255)
T TIGR03825 86 IQEAKQEGYEAGFQAGESEA 105 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 17
>COG5464 Uncharacterized conserved protein [Function unknown]
Probab=87.49 E-value=1.3 Score=35.55 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHhHHhHHHHHH--HHHHHHH
Q 034369 23 LEQTHLKEGYDEGYTHGLATRKEEAK--DVGLKHG 55 (96)
Q Consensus 23 lEe~~~~eGY~EG~~~G~~~G~~EG~--~~G~~kG 55 (96)
=|..||++.-++|-.+|...|.+||+ +-|.++|
T Consensus 212 r~t~~yqEi~eeg~~~Ge~~g~~egr~~~eG~~eg 246 (289)
T COG5464 212 RETRFYQEIAEEGPQHGEALMTIAGRLEQEGKQEG 246 (289)
T ss_pred chhHHHHHHHHHhhhhhhHHhhHhhHHHHHHHHhh
Confidence 46789999999998899998888888 8888777
No 18
>PRK09956 hypothetical protein; Provisional
Probab=80.01 E-value=5.9 Score=31.39 Aligned_cols=19 Identities=26% Similarity=0.199 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhHHhHHHHH
Q 034369 29 KEGYDEGYTHGLATRKEEA 47 (96)
Q Consensus 29 ~eGY~EG~~~G~~~G~~EG 47 (96)
+.=.++|...|.+.|..||
T Consensus 248 e~l~qeG~e~G~q~G~~eG 266 (308)
T PRK09956 248 ERLRQEGHQIGWQEGKLEG 266 (308)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 19
>PRK06328 type III secretion system protein; Validated
Probab=77.69 E-value=2.6 Score=32.01 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhHHh
Q 034369 26 THLKEGYDEGYTHGLAT 42 (96)
Q Consensus 26 ~~~~eGY~EG~~~G~~~ 42 (96)
+.++++|++||++|..+
T Consensus 55 ~i~eeA~~eGy~eG~~~ 71 (223)
T PRK06328 55 KLREEAKNQGFKEGSKA 71 (223)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666554
No 20
>PRK09098 type III secretion system protein HrpB; Validated
Probab=77.04 E-value=11 Score=28.86 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=23.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 034369 19 SSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFE 57 (96)
Q Consensus 19 ~il~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe 57 (96)
.|+.--.+-|++++++||.+|...++.|-.....+.-++
T Consensus 65 ~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~~~~~ 103 (233)
T PRK09098 65 AILEAARREADRSARRGYAAGLRQALAEWHARGADHAFA 103 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444666777777777777777766555544443
No 21
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=76.93 E-value=6 Score=30.22 Aligned_cols=27 Identities=7% Similarity=-0.027 Sum_probs=14.1
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 034369 33 DEGYTHGLATRKEEAKDVGLKHGFETG 59 (96)
Q Consensus 33 ~EG~~~G~~~G~~EG~~~G~~kGfe~g 59 (96)
+..+.++...||.+|+.-|++.|.+.+
T Consensus 83 e~~~e~A~~eGy~eG~~~G~~e~~~~~ 109 (255)
T TIGR03825 83 ERLIQEAKQEGYEAGFQAGESEALSIY 109 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555433
No 22
>PRK06937 type III secretion system protein; Reviewed
Probab=76.64 E-value=16 Score=26.98 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=15.2
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHH
Q 034369 33 DEGYTHGLATRKEEAKDVGLKHGFET 58 (96)
Q Consensus 33 ~EG~~~G~~~G~~EG~~~G~~kGfe~ 58 (96)
+++++++++.||.+|+.-|.....+.
T Consensus 51 ~~~~e~~~~~Gy~~G~~~a~~e~~e~ 76 (204)
T PRK06937 51 QEVYEQQKQLGYQAGLDEARTEQAEL 76 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555555443
No 23
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=75.63 E-value=17 Score=27.95 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHHHH
Q 034369 42 TRKEEAKDVGLKHG 55 (96)
Q Consensus 42 ~G~~EG~~~G~~kG 55 (96)
.||.+|++-|++.|
T Consensus 122 eGy~eG~~~g~~e~ 135 (281)
T PRK06669 122 EGYEEGYEKGREEG 135 (281)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 24
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=71.43 E-value=23 Score=24.48 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=16.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 034369 19 SSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGL 52 (96)
Q Consensus 19 ~il~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~ 52 (96)
.|+.--++-+++-+++||++|...|+.+.-..=.
T Consensus 28 ~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~ 61 (166)
T TIGR02499 28 AILADAEEEAEASRQLGYEQGLEQFWQEAAAQLA 61 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444554555555555555555544333
No 25
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=67.09 E-value=36 Score=26.27 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 034369 20 SLNLEQTHLKEGYDEGYTHGLATRKEEAKDV 50 (96)
Q Consensus 20 il~lEe~~~~eGY~EG~~~G~~~G~~EG~~~ 50 (96)
|...-...|+..+..||++|..+|..+--.+
T Consensus 46 ir~~Ar~ayE~~rarGyeeG~~~g~e~~A~l 76 (207)
T PF06635_consen 46 IREWARAAYERERARGYEEGRRAGAEQAARL 76 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344445555555555555555544444433
No 26
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=64.16 E-value=8.2 Score=26.73 Aligned_cols=10 Identities=10% Similarity=-0.133 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 034369 43 RKEEAKDVGL 52 (96)
Q Consensus 43 G~~EG~~~G~ 52 (96)
||.+|+.-|.
T Consensus 44 g~~~G~~~g~ 53 (166)
T TIGR02499 44 GYEQGLEQFW 53 (166)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 27
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=57.76 E-value=5.8 Score=21.59 Aligned_cols=11 Identities=64% Similarity=1.250 Sum_probs=9.0
Q ss_pred CCCCcccCccC
Q 034369 85 PGSKRVSGKWT 95 (96)
Q Consensus 85 ~~~~r~~~~~~ 95 (96)
|-|+|-+|.||
T Consensus 19 pqs~rppgrwt 29 (29)
T PF05570_consen 19 PQSKRPPGRWT 29 (29)
T ss_pred ccccCCCCCCC
Confidence 45689999997
No 28
>PRK15322 invasion protein OrgB; Provisional
Probab=53.08 E-value=26 Score=27.16 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHhHH
Q 034369 22 NLEQTHLKEGYDEGYTHGLATRK 44 (96)
Q Consensus 22 ~lEe~~~~eGY~EG~~~G~~~G~ 44 (96)
-=.|.++..+|++||.+|..+-.
T Consensus 34 ~eaE~ir~~A~~~GYq~Gl~qa~ 56 (210)
T PRK15322 34 EEAETLRMYAYQEGYEQGMIDAL 56 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888866543
No 29
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=48.45 E-value=39 Score=20.18 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=11.7
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHhH
Q 034369 17 FDSSLNLEQTHLKEGYDEGYTHGL 40 (96)
Q Consensus 17 FD~il~lEe~~~~eGY~EG~~~G~ 40 (96)
+|.+-...-..-+.+|.+|+.++.
T Consensus 36 ~~al~~~~~~~~e~afr~G~~d~l 59 (64)
T PF12644_consen 36 IDALGARWGLESEEAFRQGFRDGL 59 (64)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333334444555666665554
No 30
>PRK09098 type III secretion system protein HrpB; Validated
Probab=44.37 E-value=93 Score=23.79 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 034369 27 HLKEGYDEGYTHGLATRKEEAKDVGLKHGFETG 59 (96)
Q Consensus 27 ~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g 59 (96)
+.+++-++ +++..+.||.||+.-++..-.+..
T Consensus 66 I~~~A~~e-~e~~~~~Gy~eG~~~a~~e~~~~~ 97 (233)
T PRK09098 66 ILEAARRE-ADRSARRGYAAGLRQALAEWHARG 97 (233)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333 444555666666665555544433
No 31
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=37.73 E-value=38 Score=22.47 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=13.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 034369 40 LATRKEEAKDVGLKHGFETGE 60 (96)
Q Consensus 40 ~~~G~~EG~~~G~~kGfe~g~ 60 (96)
+++|+.|++-.|+-.|.+...
T Consensus 45 r~~G~SE~~I~Gfl~Gl~~As 65 (77)
T PF10911_consen 45 RKQGWSESYILGFLAGLQYAS 65 (77)
T ss_pred HHccccHHHHHHHHHHHHHHH
Confidence 346677777766666665553
No 32
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=32.81 E-value=31 Score=30.82 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC
Q 034369 52 LKHGFETGEELGFYKAVSMSGTRLFISIRPGCRPGSK 88 (96)
Q Consensus 52 ~~kGfe~g~ElGfy~G~~~~W~~~l~~~~p~~~~~~~ 88 (96)
.++.|++|.-+||..|-...=.+ ....|.++||.|=
T Consensus 14 ~ekSyhVGr~~GFlygdl~~~~~-~~~~dsSLFPlsI 49 (675)
T PF14314_consen 14 DEKSYHVGRAIGFLYGDLVLSKS-SHAEDSSLFPLSI 49 (675)
T ss_pred hhhhhhhhhhHHHHHHHHHhccC-CCCccCcccceee
Confidence 46889999999999997665544 6678999999763
No 33
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=30.86 E-value=15 Score=27.06 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=8.9
Q ss_pred HhHHHHHHHHHH
Q 034369 41 ATRKEEAKDVGL 52 (96)
Q Consensus 41 ~~G~~EG~~~G~ 52 (96)
.+||+||||||.
T Consensus 113 D~GF~eGRQyGR 124 (153)
T KOG0121|consen 113 DAGFVEGRQYGR 124 (153)
T ss_pred cccchhhhhhcC
Confidence 457788888875
No 34
>COG5464 Uncharacterized conserved protein [Function unknown]
Probab=29.20 E-value=83 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=12.8
Q ss_pred HHHHHHHhHHhHHHHHHHHHH--HHHHHHH
Q 034369 32 YDEGYTHGLATRKEEAKDVGL--KHGFETG 59 (96)
Q Consensus 32 Y~EG~~~G~~~G~~EG~~~G~--~kGfe~g 59 (96)
|+|-.++|.++|-.+|+.-|. ++|-+.|
T Consensus 217 yqEi~eeg~~~Ge~~g~~egr~~~eG~~eg 246 (289)
T COG5464 217 YQEIAEEGPQHGEALMTIAGRLEQEGKQEG 246 (289)
T ss_pred HHHHHHHhhhhhhHHhhHhhHHHHHHHHhh
Confidence 444444444444444444444 4444443
No 35
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.70 E-value=44 Score=26.10 Aligned_cols=16 Identities=6% Similarity=0.299 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhh
Q 034369 61 ELGFYKAVSMSGTRLF 76 (96)
Q Consensus 61 ElGfy~G~~~~W~~~l 76 (96)
-|-||++|+.+|.++|
T Consensus 223 ~i~fy~~~~~~We~~l 238 (240)
T cd07667 223 NIQYYEKCLTAWESII 238 (240)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4789999999999966
No 36
>PHA00438 hypothetical protein
Probab=28.08 E-value=61 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=12.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 034369 40 LATRKEEAKDVGLKHGFETGE 60 (96)
Q Consensus 40 ~~~G~~EG~~~G~~kGfe~g~ 60 (96)
+++|+.|++-.|+-.|.+...
T Consensus 45 R~~G~SE~~IaGfl~Gl~yAs 65 (81)
T PHA00438 45 RQAGYSEAFIAGFLAGLQYAS 65 (81)
T ss_pred HHcCCcHHHHHHHHHHHHHHH
Confidence 456666666666555555443
No 37
>PF05315 ICEA: ICEA Protein; InterPro: IPR007979 This family consists of several ICEA proteins from Helicobacter pylori, infection of which causes gastritis and peptic ulcer disease, and the bacteria is classified as a definite carcinogen of gastric cancer. ICEA1 is speculated to be associated with peptic ulcer disease and may have endonuclease activity [].
Probab=27.39 E-value=47 Score=26.07 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 034369 44 KEEAKDVGLKHGFETG 59 (96)
Q Consensus 44 ~~EG~~~G~~kGfe~g 59 (96)
+.||.++||..||+++
T Consensus 209 ~~e~~~~~~~~~y~~~ 224 (230)
T PF05315_consen 209 ANEGYQKGYDEGYQIG 224 (230)
T ss_pred HHHHHHHhHHHHHHhc
Confidence 4456666666666543
No 38
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.62 E-value=84 Score=22.95 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 034369 59 GEELGFYKAVSMSGTRLF 76 (96)
Q Consensus 59 g~ElGfy~G~~~~W~~~l 76 (96)
-..|-||.+++.+|.+++
T Consensus 166 ~~qi~~y~~~~~~W~~~~ 183 (185)
T cd07628 166 DGHIDFYQGLVEDWEKVE 183 (185)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 356889999999999865
No 39
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=21.39 E-value=4.2e+02 Score=21.01 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 034369 21 LNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFE 57 (96)
Q Consensus 21 l~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe 57 (96)
-..|...++-|+...+..|...|..+|.-+|+--.+-
T Consensus 196 ~~i~~~~~~ig~~~k~~~G~~~gki~G~~~gl~~~~~ 232 (238)
T TIGR01111 196 RAIEARMKDIGNLNKFHAGYYSGKIQGIMIGLTSTLS 232 (238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 3448888888888888888888888888877654443
No 40
>PF05674 DUF816: Baculovirus protein of unknown function (DUF816); InterPro: IPR008534 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf106. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes proteins that are about 200 amino acids in length. The proteins are all from baculoviruses. This family includes ORF107 from Orgyia pseudotsugata multicapsid polyhedrosis virus (OpMNPV) and a variety of other numbered ORF proteins, such as ORF52 Q91F03 from SWISSPROT, ORF140 Q9YMI8 from SWISSPROT from other baculoviruses. The function of these proteins is unknown.
Probab=21.07 E-value=63 Score=24.38 Aligned_cols=43 Identities=19% Similarity=0.080 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCcc
Q 034369 44 KEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRPGSKRV 90 (96)
Q Consensus 44 ~~EG~~~G~~kGfe~g~ElGfy~G~~~~W~~~l~~~~p~~~~~~~r~ 90 (96)
+.=+..+++.++=+.+. -|+++..+-.++|...+|.+.| |+|+
T Consensus 77 ~lIa~k~~lnk~k~~f~---~yk~~~e~alkrL~~inpdlks-SP~a 119 (171)
T PF05674_consen 77 LLIAFKFILNKSKDYFP---NYKSFIETALKRLDKINPDLKS-SPRA 119 (171)
T ss_pred HHHHHHHHHhhhhHhhh---hhHHHHHHHHHHHhcCCCcccc-CHHH
Confidence 34466677776666655 4699999999999999999998 4664
Done!