Query 034369
Match_columns 96
No_of_seqs 103 out of 174
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 21:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xz2_A CSTF-50, isoform B; RNA 29.9 16 0.00056 22.6 0.8 24 65-90 29-54 (66)
2 2kxa_A Haemagglutinin HA2 chai 27.5 73 0.0025 16.8 3.0 17 39-55 4-20 (30)
3 3sui_B Transient receptor pote 18.2 36 0.0012 18.7 0.6 10 87-96 15-25 (37)
4 3fgr_A Putative phospholipase 14.1 97 0.0033 22.2 2.2 18 22-39 69-86 (202)
5 2ahm_A Replicase NSP7, replica 14.0 23 0.00078 23.1 -1.1 25 2-26 39-63 (88)
6 1k1f_A Breakpoint cluster regi 13.9 1.2E+02 0.0041 18.9 2.3 20 66-85 5-24 (72)
7 3ub0_B Non-structural protein 13.7 18 0.0006 23.6 -1.7 22 2-23 38-59 (87)
8 2xus_A Breast cancer metastasi 11.7 1.2E+02 0.0042 17.5 1.7 14 15-28 10-23 (49)
9 3dd7_B PHD, prevent HOST death 11.5 1.7E+02 0.006 14.4 2.1 13 13-25 2-14 (23)
10 2jrm_A Ribosome modulation fac 10.8 1.5E+02 0.0053 18.1 2.1 13 24-36 9-21 (65)
No 1
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=29.93 E-value=16 Score=22.61 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhhh--hcCCCCCCCCCcc
Q 034369 65 YKAVSMSGTRLFI--SIRPGCRPGSKRV 90 (96)
Q Consensus 65 y~G~~~~W~~~l~--~~~p~~~~~~~r~ 90 (96)
|-|+..+=.++.. +.+| |++|.|+
T Consensus 29 YDG~~~iA~~L~~~v~~~~--c~PSdrL 54 (66)
T 2xz2_A 29 YDGLEKFAMELSMLVKADQ--CAPSERL 54 (66)
T ss_dssp HTTCHHHHHHHHHHHTCCC--CCCCCHH
T ss_pred HhhHHHHHHHHHhhcCCCC--CCcHHHH
Confidence 4444443333222 3455 7888886
No 2
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=27.47 E-value=73 Score=16.79 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=10.2
Q ss_pred hHHhHHHHHHHHHHHHH
Q 034369 39 GLATRKEEAKDVGLKHG 55 (96)
Q Consensus 39 G~~~G~~EG~~~G~~kG 55 (96)
|..+|++||-=-|.-.|
T Consensus 4 GAIAGfieggW~gmi~g 20 (30)
T 2kxa_A 4 GAIAGFIEGGWTGMIDG 20 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcCccccccc
Confidence 55677777665555444
No 3
>3sui_B Transient receptor potential cation channel subfa member 1; calmodulin, calcium-calmodulin, TRPV1, TRPV1 C-terminus, CAL complex, thermosensor; 1.95A {Rattus norvegicus}
Probab=18.20 E-value=36 Score=18.67 Aligned_cols=10 Identities=70% Similarity=1.292 Sum_probs=7.0
Q ss_pred CCcccCc-cCC
Q 034369 87 SKRVSGK-WTN 96 (96)
Q Consensus 87 ~~r~~~~-~~~ 96 (96)
|.||+|+ |.|
T Consensus 15 sgrvsgrnwkn 25 (37)
T 3sui_B 15 SGRVSGRNWKN 25 (37)
T ss_pred ccccccccccc
Confidence 3799986 544
No 4
>3fgr_A Putative phospholipase B-like 2 28 kDa form; alpha beta, glycosylated, disulphide bonds, N-terminal nucle hydrolase fold, two chain form; HET: NAG; 1.80A {Mus musculus} PDB: 3fgt_A*
Probab=14.13 E-value=97 Score=22.19 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 034369 22 NLEQTHLKEGYDEGYTHG 39 (96)
Q Consensus 22 ~lEe~~~~eGY~EG~~~G 39 (96)
.=+.+.|.+||-||+.-.
T Consensus 69 ~D~~qayAAG~lEGyLT~ 86 (202)
T 3fgr_A 69 NDSLQAYAAGVVEASVSE 86 (202)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhHHHHH
Confidence 346889999999998654
No 5
>2ahm_A Replicase NSP7, replicase polyprotein 1AB, light chain; SARS-COV, non-structural protein, S complex, hexadecamer, viral protein, replication; 2.40A {Sars coronavirus} SCOP: a.8.9.1 PDB: 1ysy_A 2kys_A
Probab=14.00 E-value=23 Score=23.11 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.3
Q ss_pred CccCCCCCCCCchhhhHhhhhhHHH
Q 034369 2 DLHNKSNNSNSIEVIFDSSLNLEQT 26 (96)
Q Consensus 2 ~~~~~~~~~~d~dD~FD~il~lEe~ 26 (96)
+|||+-.+..|...+||.++.|=-.
T Consensus 39 ~LHN~Il~~~D~~~a~e~l~~Ll~~ 63 (88)
T 2ahm_A 39 QLHNDILLAKDTTEAFEKMVSLLSV 63 (88)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6899999999999999988765433
No 6
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=13.93 E-value=1.2e+02 Score=18.89 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhhhcCCCCCC
Q 034369 66 KAVSMSGTRLFISIRPGCRP 85 (96)
Q Consensus 66 ~G~~~~W~~~l~~~~p~~~~ 85 (96)
-||+..|+..+...+|....
T Consensus 5 vgf~eaW~aqfp~~epp~m~ 24 (72)
T 1k1f_A 5 VGFAEAWKAQFPDSEPPRME 24 (72)
T ss_dssp HHHHHHHHHHCTTSCCCCCC
T ss_pred hHHHHHHHHhCCCCCCcHhH
Confidence 37899999988777776654
No 7
>3ub0_B Non-structural protein 7, NSP7; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=13.67 E-value=18 Score=23.61 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.5
Q ss_pred CccCCCCCCCCchhhhHhhhhh
Q 034369 2 DLHNKSNNSNSIEVIFDSSLNL 23 (96)
Q Consensus 2 ~~~~~~~~~~d~dD~FD~il~l 23 (96)
+|||+-.+..|....||.++.|
T Consensus 38 ~LHN~Ill~~D~~~a~e~l~~L 59 (87)
T 3ub0_B 38 GLHNEINLCDDPDAVLEKLLAL 59 (87)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHH
Confidence 6788888888888888877654
No 8
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=11.71 E-value=1.2e+02 Score=17.51 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=10.9
Q ss_pred hhhHhhhhhHHHHH
Q 034369 15 VIFDSSLNLEQTHL 28 (96)
Q Consensus 15 D~FD~il~lEe~~~ 28 (96)
..+|++.+||.+|-
T Consensus 10 e~ld~l~~LEkqF~ 23 (49)
T 2xus_A 10 ECVSEMLDLEKQFS 23 (49)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999997664
No 9
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=11.52 E-value=1.7e+02 Score=14.36 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=8.6
Q ss_pred chhhhHhhhhhHH
Q 034369 13 IEVIFDSSLNLEQ 25 (96)
Q Consensus 13 ~dD~FD~il~lEe 25 (96)
+|+.||.|...-.
T Consensus 2 lDaEFaaIm~~hg 14 (23)
T 3dd7_B 2 LDAEFASLFDTLD 14 (26)
T ss_pred chhHHHHHHHHHh
Confidence 5677888876443
No 10
>2jrm_A Ribosome modulation factor; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Vibrio parahaemolyticus}
Probab=10.80 E-value=1.5e+02 Score=18.06 Aligned_cols=13 Identities=23% Similarity=0.504 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 034369 24 EQTHLKEGYDEGY 36 (96)
Q Consensus 24 Ee~~~~eGY~EG~ 36 (96)
-++.|..||+.|.
T Consensus 9 leRA~~rGYqAGl 21 (65)
T 2jrm_A 9 LERAQSQGYKAGL 21 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 3566666777665
Done!