Query 034369
Match_columns 96
No_of_seqs 103 out of 174
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 21:57:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034369.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034369hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bvua1 a.8.3.1 (A:412-522) Go 17.2 43 0.0031 19.9 2.6 22 68-89 47-68 (111)
2 d2ahma1 a.8.9.1 (A:6-78) Nonst 16.2 8.5 0.00062 22.9 -1.1 25 2-26 34-58 (73)
3 g1o7d.1 a.8.3.1 (B:385-422,C:4 12.4 60 0.0044 18.5 2.2 20 69-88 42-61 (95)
4 d1udda_ a.132.1.3 (A:) Hypothe 10.8 54 0.0039 20.6 1.7 23 13-35 193-215 (215)
5 d2nmla1 d.330.1.1 (A:2-101) En 5.2 2.2E+02 0.016 17.1 2.6 21 65-85 28-48 (100)
6 d2gm8a1 a.132.1.3 (A:2-212) Te 5.0 1.8E+02 0.013 17.7 2.1 22 12-33 188-209 (211)
7 d1yzma1 a.2.19.1 (A:456-501) F 4.1 2.3E+02 0.017 14.8 1.8 13 17-29 24-36 (46)
8 d2de6a2 d.129.3.3 (A:143-384) 4.0 1.2E+02 0.0085 21.2 0.5 25 67-92 218-242 (242)
9 d1mrza1 b.43.5.1 (A:159-288) R 3.9 80 0.0059 19.4 -0.4 12 53-64 9-20 (130)
10 d1to9a_ a.132.1.3 (A:) Transcr 3.8 2.5E+02 0.018 17.3 2.1 21 13-33 193-213 (225)
No 1
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=17.17 E-value=43 Score=19.91 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=18.9
Q ss_pred HHHHHHhhhhhcCCCCCCCCCc
Q 034369 68 VSMSGTRLFISIRPGCRPGSKR 89 (96)
Q Consensus 68 ~~~~W~~~l~~~~p~~~~~~~r 89 (96)
+..+|+.++..+.++..|+|.+
T Consensus 47 l~~~wk~l~~~Q~HD~I~GTs~ 68 (111)
T d3bvua1 47 LEQARRELSLFQHHDGITGTAK 68 (111)
T ss_dssp HHHHHHHHHHHTBTTTTTSCSC
T ss_pred HHHHHHHHHhccccccccccCc
Confidence 5678999999999999988765
No 2
>d2ahma1 a.8.9.1 (A:6-78) Nonstructural protein 7, NSP7 {SARS coronavirus [TaxId: 227859]}
Probab=16.19 E-value=8.5 Score=22.85 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.4
Q ss_pred CccCCCCCCCCchhhhHhhhhhHHH
Q 034369 2 DLHNKSNNSNSIEVIFDSSLNLEQT 26 (96)
Q Consensus 2 ~~~~~~~~~~d~dD~FD~il~lEe~ 26 (96)
||||+-.+..|....||.++.|=-.
T Consensus 34 ~LHN~Il~~~D~~~a~e~l~~Ll~~ 58 (73)
T d2ahma1 34 QLHNDILLAKDTTEAFEKMVSLLSV 58 (73)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6899999999999999988765433
No 3
>g1o7d.1 a.8.3.1 (B:385-422,C:431-487) Lysosomal alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.41 E-value=60 Score=18.47 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=16.5
Q ss_pred HHHHHhhhhhcCCCCCCCCC
Q 034369 69 SMSGTRLFISIRPGCRPGSK 88 (96)
Q Consensus 69 ~~~W~~~l~~~~p~~~~~~~ 88 (96)
-.+|+.++.++.++..|+|.
T Consensus 42 ~~lwk~ll~~Q~HD~i~GTs 61 (95)
T g1o7d.1 42 APLNEAMAVLQHHDAVSGTS 61 (95)
T ss_dssp HHHHHHHHHTTBTTTTTCCS
T ss_pred HHHHHHHHhcccccccCCcC
Confidence 35799999999999988764
No 4
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=10.82 E-value=54 Score=20.57 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=19.8
Q ss_pred chhhhHhhhhhHHHHHHHHHHHH
Q 034369 13 IEVIFDSSLNLEQTHLKEGYDEG 35 (96)
Q Consensus 13 ~dD~FD~il~lEe~~~~eGY~EG 35 (96)
+.++|-.++.+|-.|-..+|+-|
T Consensus 193 ~~~iF~~~~~lE~~Fwd~ay~~~ 215 (215)
T d1udda_ 193 LRRIFITGSKFELAFWEMAWRGG 215 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999755
No 5
>d2nmla1 d.330.1.1 (A:2-101) Enhancer of rudimentary homolog, ERH {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.23 E-value=2.2e+02 Score=17.08 Aligned_cols=21 Identities=10% Similarity=0.108 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhhhcCCCCCC
Q 034369 65 YKAVSMSGTRLFISIRPGCRP 85 (96)
Q Consensus 65 y~G~~~~W~~~l~~~~p~~~~ 85 (96)
+-|+|.+....|...+|...+
T Consensus 28 megiC~iYEe~Lk~~~p~~~~ 48 (100)
T d2nmla1 28 MEGVCKMYEEHLKRMNPNSPS 48 (100)
T ss_dssp HHHHHHHHHHHHHHHSTTCSS
T ss_pred HHHHHHHHHHHHHhcCCCCCc
Confidence 569999999999888998775
No 6
>d2gm8a1 a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=5.00 E-value=1.8e+02 Score=17.73 Aligned_cols=22 Identities=14% Similarity=0.207 Sum_probs=18.2
Q ss_pred CchhhhHhhhhhHHHHHHHHHH
Q 034369 12 SIEVIFDSSLNLEQTHLKEGYD 33 (96)
Q Consensus 12 d~dD~FD~il~lEe~~~~eGY~ 33 (96)
.|.++|...+.+|-.|-+.+|+
T Consensus 188 ~~~~~f~~~~~lE~~Fwd~ay~ 209 (211)
T d2gm8a1 188 ELWPYFKEASLYELEFWQAAYE 209 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3557899999999999998885
No 7
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.14 E-value=2.3e+02 Score=14.76 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=10.3
Q ss_pred hHhhhhhHHHHHH
Q 034369 17 FDSSLNLEQTHLK 29 (96)
Q Consensus 17 FD~il~lEe~~~~ 29 (96)
||+|-.||+...+
T Consensus 24 ~dEV~~Le~NLre 36 (46)
T d1yzma1 24 MDEVRTLQENLRQ 36 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8888888887654
No 8
>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]}
Probab=3.97 E-value=1.2e+02 Score=21.23 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=18.0
Q ss_pred HHHHHHHhhhhhcCCCCCCCCCcccC
Q 034369 67 AVSMSGTRLFISIRPGCRPGSKRVSG 92 (96)
Q Consensus 67 G~~~~W~~~l~~~~p~~~~~~~r~~~ 92 (96)
..+..|+++.+..+..+.++ ++++|
T Consensus 218 ~~Ii~WRklaS~~nRGIq~p-~~~~g 242 (242)
T d2de6a2 218 EAIVAWRKLASEHNQGIQTQ-AHVSG 242 (242)
T ss_dssp HHHHHHHHHHHHHCSCBCCH-HHHHC
T ss_pred ccHHHHHHHHHHhccccCCc-ccCCC
Confidence 56788999877778887765 55544
No 9
>d1mrza1 b.43.5.1 (A:159-288) Riboflavin kinase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}
Probab=3.93 E-value=80 Score=19.39 Aligned_cols=12 Identities=42% Similarity=0.703 Sum_probs=0.6
Q ss_pred HHHHHHHHHHHH
Q 034369 53 KHGFETGEELGF 64 (96)
Q Consensus 53 ~kGfe~g~ElGf 64 (96)
.+|.++|..|||
T Consensus 9 ~~G~~~Gr~lGf 20 (130)
T d1mrza1 9 HKDREFGRKLGF 20 (130)
T ss_dssp -----------C
T ss_pred EeCCccccccCC
Confidence 356666666665
No 10
>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus subtilis [TaxId: 1423]}
Probab=3.79 E-value=2.5e+02 Score=17.28 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=17.0
Q ss_pred chhhhHhhhhhHHHHHHHHHH
Q 034369 13 IEVIFDSSLNLEQTHLKEGYD 33 (96)
Q Consensus 13 ~dD~FD~il~lEe~~~~eGY~ 33 (96)
+.++|-.++.+|-.|-..+|+
T Consensus 193 ~~~~f~~~~~lE~~Fwd~ay~ 213 (225)
T d1to9a_ 193 MKENFVISSYYEYQFWGMAYR 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 556788888899999888885
Done!