BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034370
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A9VRG3|DNLJ_BACWK DNA ligase OS=Bacillus weihenstephanensis (strain KBAB4) GN=ligA
PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|Q6HP94|DNLJ_BACHK DNA ligase OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|Q63GS3|DNLJ_BACCZ DNA ligase OS=Bacillus cereus (strain ZK / E33L) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|Q81IP2|DNLJ_BACCR DNA ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ligA
PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|B9J1L6|DNLJ_BACCQ DNA ligase OS=Bacillus cereus (strain Q1) GN=ligA PE=3 SV=2
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|B7HSW5|DNLJ_BACC7 DNA ligase OS=Bacillus cereus (strain AH187) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|B7H4U8|DNLJ_BACC4 DNA ligase OS=Bacillus cereus (strain B4264) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|C1EV74|DNLJ_BACC3 DNA ligase OS=Bacillus cereus (strain 03BB102) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|B7IUW5|DNLJ_BACC2 DNA ligase OS=Bacillus cereus (strain G9842) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|Q73EM3|DNLJ_BACC1 DNA ligase OS=Bacillus cereus (strain ATCC 10987) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|B7JM96|DNLJ_BACC0 DNA ligase OS=Bacillus cereus (strain AH820) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|Q81ZG1|DNLJ_BACAN DNA ligase OS=Bacillus anthracis GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|A0R906|DNLJ_BACAH DNA ligase OS=Bacillus thuringiensis (strain Al Hakam) GN=ligA PE=3
SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|C3L543|DNLJ_BACAC DNA ligase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495)
GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|C3PBP1|DNLJ_BACAA DNA ligase OS=Bacillus anthracis (strain A0248) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 30 PQCKSSMIA-KENCALRCLSPTC 51
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|Q6BJ08|OS9_DEBHA Protein OS-9 homolog OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YOS9 PE=3
SV=2
Length = 589
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 49 PTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKLSLG 84
P + +Y+ DP G + + QE K C++++ +G
Sbjct: 246 PRSIDIIYKCDPNHRGRIEILDQQEIKTCVYQMVIG 281
>sp|A4WCL7|NDPA_ENT38 Nucleoid-associated protein Ent638_2782 OS=Enterobacter sp. (strain
638) GN=Ent638_2782 PE=3 SV=1
Length = 335
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 53 EFVYESDPLEEGEKDFVRSQEFKYCMHKLSLGESLE 88
+F E+ L++ E+ VR Q + YC +L GE +E
Sbjct: 207 DFTAEAQ-LDKSERQNVRQQVYSYCSEQLQAGEEIE 241
>sp|A8GGW3|NDPA_SERP5 Nucleoid-associated protein Spro_3255 OS=Serratia proteamaculans
(strain 568) GN=Spro_3255 PE=3 SV=1
Length = 336
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 61 LEEGEKDFVRSQEFKYCMHKLSLGESLE 88
L++ E+ VR Q + YC +L GE +E
Sbjct: 214 LDKNERQSVRQQVYSYCNEQLQAGEEIE 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,671,472
Number of Sequences: 539616
Number of extensions: 1273112
Number of successful extensions: 2942
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2939
Number of HSP's gapped (non-prelim): 21
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)