Query 034370
Match_columns 96
No_of_seqs 33 out of 35
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 12:42:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5249 RER1 Golgi protein inv 62.5 3.9 8.4E-05 31.9 1.0 53 25-77 54-115 (180)
2 PF12269 zf-CpG_bind_C: CpG bi 32.6 9.4 0.0002 30.4 -1.1 50 5-75 161-210 (236)
3 PF13933 HRXXH: Putative pepti 26.5 30 0.00066 27.9 0.8 13 3-15 140-152 (245)
4 PF05811 DUF842: Eukaryotic pr 21.0 2.5E+02 0.0054 19.8 4.5 44 35-80 44-111 (131)
5 smart00254 ShKT ShK toxin doma 19.8 73 0.0016 17.0 1.3 22 26-47 9-31 (33)
6 PF15470 DUF4637: Domain of un 19.0 40 0.00087 26.2 0.1 26 6-31 67-96 (173)
7 TIGR03267 methan_mark_2 putati 16.2 42 0.00091 26.1 -0.3 19 68-86 6-24 (323)
8 PF15109 TMEM125: TMEM125 prot 14.6 59 0.0013 23.9 0.1 13 33-45 71-83 (112)
9 KOG3480 Mitochondrial import i 14.3 99 0.0021 22.0 1.1 22 40-66 33-54 (90)
10 PF13405 EF-hand_6: EF-hand do 13.9 1.3E+02 0.0027 15.5 1.3 22 59-84 10-31 (31)
No 1
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=62.46 E-value=3.9 Score=31.88 Aligned_cols=53 Identities=38% Similarity=0.565 Sum_probs=31.5
Q ss_pred ccccccccccchhHHHHHHHHhcChh---HHHhhhcCCCCCccchh------hhhhhhhHHH
Q 034370 25 SGLWGPQCKSSMIAKENCALRCLSPT---CYEFVYESDPLEEGEKD------FVRSQEFKYC 77 (96)
Q Consensus 25 ~glwg~~CksS~iakeNCvrrCiSps---CY~~iYg~DpLEEGEiD------v~R~~sFK~C 77 (96)
.|-|=--|-.-.+---|=-+.=+-|. -.|.+=.+|.+||||+| ++|+-+||-=
T Consensus 54 ~~gwY~icY~LgiyLLn~flaFLTPKfdms~eq~e~d~eieeg~kd~EFrPFIRrLPEFkFW 115 (180)
T COG5249 54 TGGWYLICYCLGIYLLNAFLAFLTPKFDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKFW 115 (180)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhCCCCcccHhhhccccccccccccchhhHHHHcCchhHHH
Confidence 35555555444443334333333321 25677789999999999 4677777754
No 2
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=32.59 E-value=9.4 Score=30.39 Aligned_cols=50 Identities=28% Similarity=0.470 Sum_probs=33.5
Q ss_pred CceeechhhHHHHHHHhhhcccccccccccchhHHHHHHHHhcChhHHHhhhcCCCCCccchhhhhhhhhH
Q 034370 5 DEVVFCPLFSLFCLVCFDWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFK 75 (96)
Q Consensus 5 ~~~~~~~~~~~~~~~~~di~~glwg~~CksS~iakeNCvrrCiSpsCY~~iYg~DpLEEGEiDv~R~~sFK 75 (96)
++|-=|||.. |+ -+.=|.-|.. .|.+|. .+|++++|..||||+.|.+.+-
T Consensus 161 ~~VCG~Pl~~-------~v-f~~t~~~C~~---~k~~C~----------kH~~Wek~rraeidlEr~~~~~ 210 (236)
T PF12269_consen 161 TEVCGCPLVR-------NV-FETTGEFCRL---PKKKCK----------KHYNWEKLRRAEIDLERVRQWL 210 (236)
T ss_pred ccccCCcccc-------cc-ccCCcccccC---cchhhc----------cccchHHHHHHHHHHHHHHHHH
Confidence 4666677653 22 1111555543 466664 5899999999999999988763
No 3
>PF13933 HRXXH: Putative peptidase family
Probab=26.54 E-value=30 Score=27.93 Aligned_cols=13 Identities=46% Similarity=0.585 Sum_probs=10.8
Q ss_pred CCCceeechhhHH
Q 034370 3 DTDEVVFCPLFSL 15 (96)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (96)
.|+|.|+||||--
T Consensus 140 at~ETVICdlsf~ 152 (245)
T PF13933_consen 140 ATDETVICDLSFT 152 (245)
T ss_pred CCcceEeccChhc
Confidence 4899999999853
No 4
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=21.03 E-value=2.5e+02 Score=19.76 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=31.5
Q ss_pred chhHHHHHHHHhcCh------------------------hHHHhhhcCCCCCccchhhhhhhhhHHHHHh
Q 034370 35 SMIAKENCALRCLSP------------------------TCYEFVYESDPLEEGEKDFVRSQEFKYCMHK 80 (96)
Q Consensus 35 S~iakeNCvrrCiSp------------------------sCY~~iYg~DpLEEGEiDv~R~~sFK~C~~r 80 (96)
|+-+-.+|+.+|--| .|++.+=..=+....|.|+.+ .|-.|+.+
T Consensus 44 s~e~V~~Cve~C~~pl~~aq~~vq~El~~FQ~rlqrC~~~C~dk~~d~~~~~~~~~~~~~--~~e~C~~~ 111 (131)
T PF05811_consen 44 SMEQVQRCVERCQQPLQQAQNYVQNELEQFQNRLQRCVMHCQDKAKDKMDPNPNESDAEK--QLESCVNK 111 (131)
T ss_pred CHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHH--HHHHHHHH
Confidence 667778888888776 477776555455666788854 88888864
No 5
>smart00254 ShKT ShK toxin domain. ShK toxin domain
Probab=19.81 E-value=73 Score=17.02 Aligned_cols=22 Identities=27% Similarity=0.684 Sum_probs=16.1
Q ss_pred ccc-ccccccchhHHHHHHHHhc
Q 034370 26 GLW-GPQCKSSMIAKENCALRCL 47 (96)
Q Consensus 26 glw-g~~CksS~iakeNCvrrCi 47 (96)
..| ...|.+....+.||.+.|-
T Consensus 9 ~~wa~~~C~~~~~~~~~C~ktCg 31 (33)
T smart00254 9 AAWAKGFCTNPFYMKSNCPKTCG 31 (33)
T ss_pred cchhhCcCCChhHHHhhhhhhcc
Confidence 356 6678666677799998883
No 6
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=18.96 E-value=40 Score=26.24 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=16.0
Q ss_pred ceeechhhH----HHHHHHhhhcccccccc
Q 034370 6 EVVFCPLFS----LFCLVCFDWISGLWGPQ 31 (96)
Q Consensus 6 ~~~~~~~~~----~~~~~~~di~~glwg~~ 31 (96)
.|-+|||=- --.....--|+|.|||-
T Consensus 67 SVSY~PLRQEsStqqValLRRadsgFWgwl 96 (173)
T PF15470_consen 67 SVSYCPLRQESSTQQVALLRRADSGFWGWL 96 (173)
T ss_pred ceecccccccchhhHHHHhhcccCCchhhh
Confidence 467788731 11222356789999994
No 7
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=16.20 E-value=42 Score=26.07 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=14.9
Q ss_pred hhhhhhhHHHHHhhhcccc
Q 034370 68 FVRSQEFKYCMHKLSLGES 86 (96)
Q Consensus 68 v~R~~sFK~C~~r~s~ge~ 86 (96)
++|+++|++|.++...++-
T Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (323)
T TIGR03267 6 ARELRSFEGVTRKHPIKDV 24 (323)
T ss_pred HHHHHhCccchhhcCHHHH
Confidence 4689999999997765543
No 8
>PF15109 TMEM125: TMEM125 protein family
Probab=14.58 E-value=59 Score=23.85 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=11.2
Q ss_pred ccchhHHHHHHHH
Q 034370 33 KSSMIAKENCALR 45 (96)
Q Consensus 33 ksS~iakeNCvrr 45 (96)
-||++..+||+|+
T Consensus 71 LSSAvQDMnCir~ 83 (112)
T PF15109_consen 71 LSSAVQDMNCIRS 83 (112)
T ss_pred HHHHHhhhhhhcc
Confidence 4789999999985
No 9
>KOG3480 consensus Mitochondrial import inner membrane translocase, subunits TIM10/TIM12 [Intracellular trafficking, secretion, and vesicular transport]
Probab=14.29 E-value=99 Score=21.96 Aligned_cols=22 Identities=32% Similarity=0.887 Sum_probs=18.1
Q ss_pred HHHHHHhcChhHHHhhhcCCCCCccch
Q 034370 40 ENCALRCLSPTCYEFVYESDPLEEGEK 66 (96)
Q Consensus 40 eNCvrrCiSpsCY~~iYg~DpLEEGEi 66 (96)
.+|-.+||.|. |..-.|--||-
T Consensus 33 ~tC~~KCI~~~-----y~EaeLtKGE~ 54 (90)
T KOG3480|consen 33 NTCHKKCIPPR-----YKEAELTKGES 54 (90)
T ss_pred HHHHHHhCCcc-----cccccccCchh
Confidence 47999999997 67777888883
No 10
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=13.90 E-value=1.3e+02 Score=15.52 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=13.9
Q ss_pred CCCCccchhhhhhhhhHHHHHhhhcc
Q 034370 59 DPLEEGEKDFVRSQEFKYCMHKLSLG 84 (96)
Q Consensus 59 DpLEEGEiDv~R~~sFK~C~~r~s~g 84 (96)
|.=-.|.||. .+|+.++++ |+|
T Consensus 10 D~d~dG~I~~---~el~~~l~~-~lG 31 (31)
T PF13405_consen 10 DKDGDGFIDF---EELRAILRK-SLG 31 (31)
T ss_dssp -TTSSSEEEH---HHHHHHHHH-HTT
T ss_pred CCCCCCcCcH---HHHHHHHHH-hcC
Confidence 3335677777 478877776 554
Done!