Query 034370
Match_columns 96
No_of_seqs 33 out of 35
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 21:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k5c_A Uncharacterized protein 60.0 1.1 3.9E-05 30.9 -1.1 30 47-76 53-83 (95)
2 1eb6_A Neutral protease II; me 17.8 39 0.0013 23.4 0.9 10 5-14 98-107 (177)
3 1gwm_A NCP1, non-catalytic pro 17.3 31 0.0011 25.3 0.3 32 28-72 24-55 (153)
4 1wcu_A CBM29_1, non-catalytic 16.3 34 0.0012 25.1 0.3 33 28-73 23-55 (153)
5 1wig_A KIAA1808 protein; LIM d 12.3 92 0.0031 17.9 1.4 17 47-63 55-71 (73)
6 1g12_A Peptidyl-Lys metalloend 12.3 68 0.0023 21.9 0.9 9 6-14 93-101 (167)
7 2vy4_A U11/U12 small nuclear r 9.8 94 0.0032 17.1 0.7 9 4-12 2-10 (37)
8 3psm_A Defensin, SPE10; dimer, 8.7 1.6E+02 0.0053 16.8 1.4 21 24-48 6-26 (47)
9 2x3c_A Toxic extracellular end 7.3 1.5E+02 0.0051 22.8 1.2 9 6-14 269-277 (343)
10 2c55_A Protein P6; HIV-1, P6-G 6.8 1.6E+02 0.0054 17.5 0.9 12 51-62 40-51 (52)
No 1
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=59.95 E-value=1.1 Score=30.90 Aligned_cols=30 Identities=37% Similarity=0.492 Sum_probs=26.6
Q ss_pred cChhHHHhhhcCC-CCCccchhhhhhhhhHH
Q 034370 47 LSPTCYEFVYESD-PLEEGEKDFVRSQEFKY 76 (96)
Q Consensus 47 iSpsCY~~iYg~D-pLEEGEiDv~R~~sFK~ 76 (96)
.||.|-++.||.. |-+|.|.=+.=+|.||+
T Consensus 53 kCP~CgEEFyG~~Lp~~EaeKVFELLNdFkG 83 (95)
T 2k5c_A 53 KCPVCGEEFYGKTLPRREAEKVFELLNDFKG 83 (95)
T ss_dssp ECTTTCCEEETTSSCTTTHHHHHHHHHSCSS
T ss_pred cCCCccHHHhcccCChHHHHHHHHHHHHccC
Confidence 4799999999986 79999998888999986
No 2
>1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A {Aspergillus oryzae} SCOP: d.92.1.12
Probab=17.75 E-value=39 Score=23.41 Aligned_cols=10 Identities=20% Similarity=0.757 Sum_probs=8.2
Q ss_pred CceeechhhH
Q 034370 5 DEVVFCPLFS 14 (96)
Q Consensus 5 ~~~~~~~~~~ 14 (96)
.+|+|||+|.
T Consensus 98 ~~i~~Cp~ff 107 (177)
T 1eb6_A 98 NEIANCDIYY 107 (177)
T ss_dssp TEEEECHHHH
T ss_pred CeEEECchHH
Confidence 4799999874
No 3
>1gwm_A NCP1, non-catalytic protein 1; carbohydrate binding domain, glucomannan, cellohexaose, mannohexaose, cellulosome; HET: GLC BGC; 1.15A {Piromyces equi} SCOP: b.18.1.19 PDB: 1gwk_A* 1gwl_A* 1w90_A 1w8t_A* 1w8u_A* 1w8w_A 1w8z_A 1w9f_A 1oh3_A*
Probab=17.33 E-value=31 Score=25.29 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=22.0
Q ss_pred cccccccchhHHHHHHHHhcChhHHHhhhcCCCCCccchhhhhhh
Q 034370 28 WGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQ 72 (96)
Q Consensus 28 wg~~CksS~iakeNCvrrCiSpsCY~~iYg~DpLEEGEiDv~R~~ 72 (96)
|||.|+-|-... ..|-..||=|=|-|-+.|++
T Consensus 24 WGW~~~~S~~~~-------------s~ii~~~~~~YGAiSLK~~~ 55 (153)
T 1gwm_A 24 WGWGCTLSYYGG-------------AMIINPQEGKYGAVSLKRNS 55 (153)
T ss_dssp CCBSEEEEEETT-------------EEEEEECTTSCCEEEEEESS
T ss_pred cccCceEEecCC-------------eEEEcCCCCccceEEeeccC
Confidence 999999875321 13445677788888877765
No 4
>1wcu_A CBM29_1, non-catalytic protein 1; carbohydrate binding, carbohydrate binding module; 1.5A {Piromyces equi}
Probab=16.35 E-value=34 Score=25.09 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=23.9
Q ss_pred cccccccchhHHHHHHHHhcChhHHHhhhcCCCCCccchhhhhhhh
Q 034370 28 WGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQE 73 (96)
Q Consensus 28 wg~~CksS~iakeNCvrrCiSpsCY~~iYg~DpLEEGEiDv~R~~s 73 (96)
|||.|+-|-... ..|-..||=|=|-|-+.|+||
T Consensus 23 WGW~~~mS~~~~-------------s~vi~~~~~~YGAiSLK~~nS 55 (153)
T 1wcu_A 23 WGWDSKMSFKDN-------------SLVLTADPDEYGAISLKNLNS 55 (153)
T ss_dssp CCBSEEEEEETT-------------EEEEEECTTCCCEEEEEESSS
T ss_pred cccCceEEecCC-------------eEEEcCCCCccceEEEeeccC
Confidence 999999875331 134567888889999888743
No 5
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=12.30 E-value=92 Score=17.86 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.0
Q ss_pred cChhHHHhhhcCCCCCc
Q 034370 47 LSPTCYEFVYESDPLEE 63 (96)
Q Consensus 47 iSpsCY~~iYg~DpLEE 63 (96)
.|+.||+.++..+...+
T Consensus 55 yC~~C~~~~~~~~~~r~ 71 (73)
T 1wig_A 55 WHPACRQAARTEDSGPS 71 (73)
T ss_dssp ECTTHHHHTSSSSCCSC
T ss_pred EChHHChHhhcccccCC
Confidence 46789999998776543
No 6
>1g12_A Peptidyl-Lys metalloendopeptidase; zinc cordinate,metalloprotease, hydrolase; HET: MAN; 1.60A {Grifola frondosa} SCOP: d.92.1.12 PDB: 1ge5_A* 1ge6_A* 1ge7_A*
Probab=12.27 E-value=68 Score=21.94 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=7.4
Q ss_pred ceeechhhH
Q 034370 6 EVVFCPLFS 14 (96)
Q Consensus 6 ~~~~~~~~~ 14 (96)
+|++||+|.
T Consensus 93 ~i~~Cp~f~ 101 (167)
T 1g12_A 93 TVYLCGAFW 101 (167)
T ss_dssp EEEECGGGG
T ss_pred eEEECCchh
Confidence 599999874
No 7
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=9.78 E-value=94 Score=17.07 Aligned_cols=9 Identities=67% Similarity=1.357 Sum_probs=6.4
Q ss_pred CCceeechh
Q 034370 4 TDEVVFCPL 12 (96)
Q Consensus 4 ~~~~~~~~~ 12 (96)
.++.|.||+
T Consensus 2 ~~~~v~CPy 10 (37)
T 2vy4_A 2 SDEVVICPY 10 (37)
T ss_dssp CCCCEECTT
T ss_pred CceEEECCC
Confidence 467788884
No 8
>3psm_A Defensin, SPE10; dimer, antimicrobial protein; 0.98A {Pachyrhizus erosus} SCOP: g.3.7.5 PDB: 2gl1_A 2lj7_A
Probab=8.66 E-value=1.6e+02 Score=16.83 Aligned_cols=21 Identities=14% Similarity=0.507 Sum_probs=15.9
Q ss_pred cccccccccccchhHHHHHHHHhcC
Q 034370 24 ISGLWGPQCKSSMIAKENCALRCLS 48 (96)
Q Consensus 24 ~~glwg~~CksS~iakeNCvrrCiS 48 (96)
.|+-|--.|.++ .||+..|+.
T Consensus 6 ~S~~fkG~C~~~----~nC~~~C~~ 26 (47)
T 3psm_A 6 LADTFRGPCFTD----GSCDDHCKN 26 (47)
T ss_dssp ECSSCCSCCCCH----HHHHHHHHH
T ss_pred CCCCcEEEcCCc----ccHHHHhcC
Confidence 367787778654 899999975
No 9
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=7.35 E-value=1.5e+02 Score=22.84 Aligned_cols=9 Identities=33% Similarity=0.666 Sum_probs=7.8
Q ss_pred ceeechhhH
Q 034370 6 EVVFCPLFS 14 (96)
Q Consensus 6 ~~~~~~~~~ 14 (96)
++++||+|.
T Consensus 269 ~i~~Cp~ff 277 (343)
T 2x3c_A 269 KVYLCKSFW 277 (343)
T ss_dssp EEEECHHHH
T ss_pred eEEECCchh
Confidence 799999975
No 10
>2c55_A Protein P6; HIV-1, P6-GAG, AIDS, core protein, lipoprotein, membrane, metal-binding, myristate, phosphorylation, polyprotein; NMR {Human immunodeficiency virus type 1}
Probab=6.79 E-value=1.6e+02 Score=17.54 Aligned_cols=12 Identities=25% Similarity=0.456 Sum_probs=8.9
Q ss_pred HHHhhhcCCCCC
Q 034370 51 CYEFVYESDPLE 62 (96)
Q Consensus 51 CY~~iYg~DpLE 62 (96)
...+|+|+|||-
T Consensus 40 SLkSLFGnDp~s 51 (52)
T 2c55_A 40 SLRSLFGSDPSS 51 (52)
T ss_dssp GGGTGGGCCCCC
T ss_pred chhhhcCCCCCc
Confidence 457888888873
Done!