Query 034371
Match_columns 96
No_of_seqs 31 out of 33
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 12:43:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10669 Phage_Gp23: Protein g 72.1 4.7 0.0001 29.5 3.0 21 8-28 16-36 (121)
2 PF05510 Sarcoglycan_2: Sarcog 70.3 19 0.00041 30.6 6.6 33 6-38 281-320 (386)
3 PF07172 GRP: Glycine rich pro 64.4 4.5 9.8E-05 27.8 1.6 11 20-30 14-24 (95)
4 PF06387 Calcyon: D1 dopamine 55.4 13 0.00028 29.2 2.8 20 7-26 85-104 (186)
5 KOG3164 Uncharacterized protei 53.9 6.8 0.00015 31.6 1.1 17 67-83 191-207 (236)
6 PF08999 SP_C-Propep: Surfacta 45.9 40 0.00086 23.9 3.8 29 3-31 29-57 (93)
7 PF00540 Gag_p17: gag gene pro 45.3 20 0.00044 26.7 2.4 16 5-20 72-87 (140)
8 PRK13254 cytochrome c-type bio 45.2 33 0.00072 25.2 3.5 26 6-31 8-33 (148)
9 PF12273 RCR: Chitin synthesis 43.5 20 0.00043 24.8 2.1 8 77-84 99-106 (130)
10 PF06643 DUF1158: Protein of u 42.9 19 0.00041 25.0 1.8 14 16-29 53-66 (82)
11 KOG4410 5-formyltetrahydrofola 37.7 13 0.00029 31.7 0.5 18 68-85 44-61 (396)
12 COG2332 CcmE Cytochrome c-type 34.3 60 0.0013 24.7 3.5 26 6-31 8-33 (153)
13 PHA03255 BDLF3; Provisional 33.3 29 0.00063 27.7 1.8 21 11-31 184-204 (234)
14 PRK02251 putative septation in 32.5 66 0.0014 22.3 3.2 25 3-27 30-54 (87)
15 PRK00159 putative septation in 30.0 74 0.0016 22.1 3.1 25 3-27 29-53 (87)
16 PRK13150 cytochrome c-type bio 29.9 81 0.0018 23.8 3.6 26 6-31 8-33 (159)
17 PF06103 DUF948: Bacterial pro 29.8 68 0.0015 20.6 2.8 18 9-26 3-20 (90)
18 PF06637 PV-1: PV-1 protein (P 28.2 61 0.0013 28.4 3.0 26 6-31 30-55 (442)
19 PF15176 LRR19-TM: Leucine-ric 26.6 85 0.0018 22.5 3.0 26 4-29 14-39 (102)
20 PF09451 ATG27: Autophagy-rela 25.9 85 0.0019 24.3 3.2 27 3-30 199-225 (268)
21 PRK13159 cytochrome c-type bio 25.4 1.1E+02 0.0024 23.0 3.6 26 6-31 8-33 (155)
22 PHA02337 putative high light i 25.4 90 0.002 18.5 2.5 20 9-28 7-26 (35)
23 PRK02958 tatA twin arginine tr 25.1 56 0.0012 21.9 1.8 16 13-28 8-23 (73)
24 PF06781 UPF0233: Uncharacteri 24.6 1E+02 0.0022 21.2 3.0 27 3-29 29-55 (87)
25 PF11511 RhodobacterPufX: Intr 24.4 1.2E+02 0.0025 20.4 3.2 18 9-26 28-45 (67)
26 PF07180 DUF1401: Protein of u 24.4 42 0.00091 25.3 1.2 21 70-90 99-119 (146)
27 PRK04598 tatA twin arginine tr 24.1 59 0.0013 22.2 1.8 15 13-27 8-22 (81)
28 PRK04561 tatA twin arginine tr 22.1 68 0.0015 21.8 1.7 14 14-27 9-22 (75)
29 PF12297 EVC2_like: Ellis van 21.7 1.1E+02 0.0024 26.8 3.3 20 6-25 70-89 (429)
30 PRK13165 cytochrome c-type bio 21.2 1.5E+02 0.0032 22.4 3.5 25 7-31 9-33 (160)
31 COG3136 GlpM Uncharacterized m 21.0 1.1E+02 0.0024 22.3 2.8 19 4-22 2-20 (111)
32 PRK03554 tatA twin arginine tr 20.6 76 0.0016 22.2 1.8 15 13-27 8-22 (89)
33 PRK14859 tatA twin arginine tr 20.6 78 0.0017 20.5 1.7 15 13-27 8-22 (63)
No 1
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=72.06 E-value=4.7 Score=29.49 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 034371 8 KALFGALAVGWLICLLLIGNL 28 (96)
Q Consensus 8 ~~l~~~v~~vg~V~lLlvg~l 28 (96)
-.||++++++.|++||.|++-
T Consensus 16 ~~~FA~L~i~~FiILLIi~~~ 36 (121)
T PF10669_consen 16 IMFFAFLFIVVFIILLIITKS 36 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999998864
No 2
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=70.34 E-value=19 Score=30.64 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhc-------cCCccccee
Q 034371 6 SFKALFGALAVGWLICLLLIGNLE-------SGGNSTSTL 38 (96)
Q Consensus 6 ~~~~l~~~v~~vg~V~lLlvg~l~-------sg~~~~~~t 38 (96)
++.-++-++++-++|++||+.+|. ||.++++..
T Consensus 281 y~~d~~vtl~iPl~i~llL~llLs~Imc~rREG~~~rd~~ 320 (386)
T PF05510_consen 281 YFPDFLVTLAIPLIIALLLLLLLSYIMCCRREGVKKRDSK 320 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHheechHHhhcchhc
Confidence 444455556666666666655552 676666643
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.42 E-value=4.5 Score=27.78 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=6.0
Q ss_pred HHHHHHhhhcc
Q 034371 20 ICLLLIGNLES 30 (96)
Q Consensus 20 V~lLlvg~l~s 30 (96)
++||||+|-.+
T Consensus 14 A~lLlisSeva 24 (95)
T PF07172_consen 14 AALLLISSEVA 24 (95)
T ss_pred HHHHHHHhhhh
Confidence 45566665544
No 4
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=55.40 E-value=13 Score=29.15 Aligned_cols=20 Identities=20% Similarity=0.052 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 034371 7 FKALFGALAVGWLICLLLIG 26 (96)
Q Consensus 7 ~~~l~~~v~~vg~V~lLlvg 26 (96)
-+...-++|+++||+||++-
T Consensus 85 t~lI~~alAfl~Cv~~Lv~Y 104 (186)
T PF06387_consen 85 TRLIAFALAFLGCVVFLVMY 104 (186)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 34566789999999888753
No 5
>KOG3164 consensus Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=53.95 E-value=6.8 Score=31.62 Aligned_cols=17 Identities=41% Similarity=0.790 Sum_probs=13.9
Q ss_pred cccccccCCCCCCcccc
Q 034371 67 NYMSKRRVPNGPDPIHN 83 (96)
Q Consensus 67 ~~~SkRrvP~GPdPiHN 83 (96)
+..-||++|.||||+.=
T Consensus 191 ~~~kk~k~~k~pNpLs~ 207 (236)
T KOG3164|consen 191 NKEKKRKGPKGPNPLSC 207 (236)
T ss_pred hhhhcCCCCCCCCCccc
Confidence 34568999999999974
No 6
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=45.86 E-value=40 Score=23.86 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=21.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhccC
Q 034371 3 SSLSFKALFGALAVGWLICLLLIGNLESG 31 (96)
Q Consensus 3 ~s~~~~~l~~~v~~vg~V~lLlvg~l~sg 31 (96)
|...+|.|+-.|+++.+|++.++|+|--|
T Consensus 29 ~p~~lKrlliivvVvVlvVvvivg~LLMG 57 (93)
T PF08999_consen 29 CPVNLKRLLIIVVVVVLVVVVIVGALLMG 57 (93)
T ss_dssp S-SHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccceEEEEEEeeehhHHHHHHHHHHH
Confidence 34467888888888888888888888543
No 7
>PF00540 Gag_p17: gag gene protein p17 (matrix protein); InterPro: IPR000071 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from immunodeficiency lentiviruses, such as Human immunodeficiency virus (HIV) and Simian immunodeficiency virus (SIV-cpz) []. The structure of the HIV protein consists of 5 alpha helices, a short 3.10 helix and a 3-stranded mixed beta-sheet [].; GO: 0005198 structural molecule activity; PDB: 2JMG_A 1L6N_A 2NV3_A 1ED1_A 1ECW_A 2C7U_C 2H3F_A 1HIW_S 2H3V_A 2H3I_A ....
Probab=45.31 E-value=20 Score=26.71 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHH
Q 034371 5 LSFKALFGALAVGWLI 20 (96)
Q Consensus 5 ~~~~~l~~~v~~vg~V 20 (96)
--+++||.+|+++.||
T Consensus 72 eeLkSL~NtvavLyCV 87 (140)
T PF00540_consen 72 EELKSLFNTVAVLYCV 87 (140)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cccchhhhccceeEEE
Confidence 4689999999999998
No 8
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=45.24 E-value=33 Score=25.21 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccC
Q 034371 6 SFKALFGALAVGWLICLLLIGNLESG 31 (96)
Q Consensus 6 ~~~~l~~~v~~vg~V~lLlvg~l~sg 31 (96)
.+..++.++++++++..|++.+|.++
T Consensus 8 rl~~~~~~~~~~~~~~~L~~~a~~~~ 33 (148)
T PRK13254 8 RLLIILGALAALGLAVALVLYALRQN 33 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67778888899999989999999765
No 9
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=43.54 E-value=20 Score=24.84 Aligned_cols=8 Identities=25% Similarity=0.152 Sum_probs=3.5
Q ss_pred CCCccccc
Q 034371 77 GPDPIHNR 84 (96)
Q Consensus 77 GPdPiHNR 84 (96)
.+.|.|-.
T Consensus 99 ~~~P~~~~ 106 (130)
T PF12273_consen 99 LQPPPHAY 106 (130)
T ss_pred cCCCCccc
Confidence 34444443
No 10
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=42.95 E-value=19 Score=24.98 Aligned_cols=14 Identities=29% Similarity=0.664 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhc
Q 034371 16 VGWLICLLLIGNLE 29 (96)
Q Consensus 16 ~vg~V~lLlvg~l~ 29 (96)
++-|+|||++|++|
T Consensus 53 l~FClWFLlLGaiE 66 (82)
T PF06643_consen 53 LVFCLWFLLLGAIE 66 (82)
T ss_pred HHHHHHHHHHhHHH
Confidence 35589999999986
No 11
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=37.66 E-value=13 Score=31.66 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=16.0
Q ss_pred ccccccCCCCCCcccccc
Q 034371 68 YMSKRRVPNGPDPIHNRR 85 (96)
Q Consensus 68 ~~SkRrvP~GPdPiHNR~ 85 (96)
+|.++.+--||+|+|||-
T Consensus 44 ~me~~n~a~~prpvhhRI 61 (396)
T KOG4410|consen 44 KMEEGNVAIGPRPVHHRI 61 (396)
T ss_pred HHhhcccccCCcchhhcC
Confidence 678889999999999994
No 12
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=34.27 E-value=60 Score=24.72 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccC
Q 034371 6 SFKALFGALAVGWLICLLLIGNLESG 31 (96)
Q Consensus 6 ~~~~l~~~v~~vg~V~lLlvg~l~sg 31 (96)
++..++.++++++++..|++.+|.++
T Consensus 8 Rl~~il~~~a~l~~a~~l~Lyal~~n 33 (153)
T COG2332 8 RLWIILAGLAGLALAVGLVLYALRSN 33 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 57788899999999999999999643
No 13
>PHA03255 BDLF3; Provisional
Probab=33.29 E-value=29 Score=27.73 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhhccC
Q 034371 11 FGALAVGWLICLLLIGNLESG 31 (96)
Q Consensus 11 ~~~v~~vg~V~lLlvg~l~sg 31 (96)
+..|+|||+-.|+||.+|.-|
T Consensus 184 lwtlvfvgltflmlilifaag 204 (234)
T PHA03255 184 LWTLVFVGLTFLMLILIFAAG 204 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 457888888888888888654
No 14
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=32.52 E-value=66 Score=22.30 Aligned_cols=25 Identities=32% Similarity=0.219 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhh
Q 034371 3 SSLSFKALFGALAVGWLICLLLIGN 27 (96)
Q Consensus 3 ~s~~~~~l~~~v~~vg~V~lLlvg~ 27 (96)
+..-+..++-++.++|++|+++.-.
T Consensus 30 sP~W~~~~m~~lm~~Gl~WlvvyYl 54 (87)
T PRK02251 30 NPRWFVPLFVALMIIGLIWLVVYYL 54 (87)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhh
Confidence 3446788888999999999887554
No 15
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=30.04 E-value=74 Score=22.07 Aligned_cols=25 Identities=24% Similarity=0.065 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhh
Q 034371 3 SSLSFKALFGALAVGWLICLLLIGN 27 (96)
Q Consensus 3 ~s~~~~~l~~~v~~vg~V~lLlvg~ 27 (96)
+..-+..++-++.++|++|+++.-.
T Consensus 29 sp~W~~~~m~glm~~GllWlvvyYl 53 (87)
T PRK00159 29 SSVWYVVLMLGLMLIGLAWLVVNYL 53 (87)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhh
Confidence 4457888889999999999887554
No 16
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=29.94 E-value=81 Score=23.83 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccC
Q 034371 6 SFKALFGALAVGWLICLLLIGNLESG 31 (96)
Q Consensus 6 ~~~~l~~~v~~vg~V~lLlvg~l~sg 31 (96)
++..++.+++.++++..|++.+|.++
T Consensus 8 Rl~~v~~~~~~~~~a~~Lvl~al~~n 33 (159)
T PRK13150 8 RLWVVCAVLAGLGLTTALVLYALRAN 33 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45556667777888888999999765
No 17
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=29.79 E-value=68 Score=20.58 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034371 9 ALFGALAVGWLICLLLIG 26 (96)
Q Consensus 9 ~l~~~v~~vg~V~lLlvg 26 (96)
.++.|++|+.+|++|..-
T Consensus 3 ~lI~Aiaf~vLvi~l~~~ 20 (90)
T PF06103_consen 3 GLIAAIAFAVLVIFLIKV 20 (90)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467778888887776643
No 18
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=28.23 E-value=61 Score=28.37 Aligned_cols=26 Identities=23% Similarity=0.352 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccC
Q 034371 6 SFKALFGALAVGWLICLLLIGNLESG 31 (96)
Q Consensus 6 ~~~~l~~~v~~vg~V~lLlvg~l~sg 31 (96)
+|-+|.--|+.+|+|+||+-|.-..+
T Consensus 30 lF~SLIQ~LIIlgLVLFmVYGn~h~~ 55 (442)
T PF06637_consen 30 LFVSLIQFLIILGLVLFMVYGNVHVS 55 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcchh
Confidence 34455567788899999988766433
No 19
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=26.60 E-value=85 Score=22.52 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhc
Q 034371 4 SLSFKALFGALAVGWLICLLLIGNLE 29 (96)
Q Consensus 4 s~~~~~l~~~v~~vg~V~lLlvg~l~ 29 (96)
+..+.+|.|.|+++-++.||++-+.+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaK 39 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAK 39 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHH
Confidence 34677788877777777777766654
No 20
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=25.91 E-value=85 Score=24.34 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=17.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 034371 3 SSLSFKALFGALAVGWLICLLLIGNLES 30 (96)
Q Consensus 3 ~s~~~~~l~~~v~~vg~V~lLlvg~l~s 30 (96)
+.++|..|| .+++++++.-|++|+.-+
T Consensus 199 ~~g~f~wl~-i~~~l~~~~Y~i~g~~~n 225 (268)
T PF09451_consen 199 GWGFFTWLF-IILFLFLAAYLIFGSWYN 225 (268)
T ss_pred cccHHHHHH-HHHHHHHHHHhhhhhhee
Confidence 334565444 566777778888888865
No 21
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=25.40 E-value=1.1e+02 Score=23.01 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccC
Q 034371 6 SFKALFGALAVGWLICLLLIGNLESG 31 (96)
Q Consensus 6 ~~~~l~~~v~~vg~V~lLlvg~l~sg 31 (96)
++..++.+++.++++..|++.+|.++
T Consensus 8 Rl~~v~~~~~~~~~a~~Lv~~al~~n 33 (155)
T PRK13159 8 RLWLVIGVLTAAALAVTLIVLALQRN 33 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 44556667777888888888888754
No 22
>PHA02337 putative high light inducible protein
Probab=25.40 E-value=90 Score=18.48 Aligned_cols=20 Identities=15% Similarity=-0.064 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 034371 9 ALFGALAVGWLICLLLIGNL 28 (96)
Q Consensus 9 ~l~~~v~~vg~V~lLlvg~l 28 (96)
.+=+.++++|+|.++.+-.+
T Consensus 7 ~~NGRlAMiGfv~~~~~e~~ 26 (35)
T PHA02337 7 IFNGWLAMIGFVAAVGAYAT 26 (35)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 35578999999987765443
No 23
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=25.10 E-value=56 Score=21.87 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 034371 13 ALAVGWLICLLLIGNL 28 (96)
Q Consensus 13 ~v~~vg~V~lLlvg~l 28 (96)
-++++.+|+||++|+=
T Consensus 8 elliIl~IvlllFG~k 23 (73)
T PRK02958 8 HWLIVLVIVVLVFGTK 23 (73)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 3556667788888753
No 24
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=24.60 E-value=1e+02 Score=21.20 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=20.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhc
Q 034371 3 SSLSFKALFGALAVGWLICLLLIGNLE 29 (96)
Q Consensus 3 ~s~~~~~l~~~v~~vg~V~lLlvg~l~ 29 (96)
+..-+..++-++.++|++|+.+.-...
T Consensus 29 sp~W~~p~m~~lmllGL~WiVvyYi~~ 55 (87)
T PF06781_consen 29 SPRWYAPLMLGLMLLGLLWIVVYYISG 55 (87)
T ss_pred CCccHHHHHHHHHHHHHHHHhhhhccc
Confidence 344677888899999999988755443
No 25
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=24.42 E-value=1.2e+02 Score=20.37 Aligned_cols=18 Identities=28% Similarity=0.061 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034371 9 ALFGALAVGWLICLLLIG 26 (96)
Q Consensus 9 ~l~~~v~~vg~V~lLlvg 26 (96)
+.++++++++.++++++.
T Consensus 28 ag~Aav~~~~~~~~l~~~ 45 (67)
T PF11511_consen 28 AGYAAVFFLGLWFLLVAL 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 455666666665555543
No 26
>PF07180 DUF1401: Protein of unknown function (DUF1401); InterPro: IPR020357 This entry represents CaiF, a specific carnitine-sensitive transcription regulator. CaiF and CRP a cyclic AMP receptor protein, are required to activate the cai and fix operons, which are involved in anaerobic carnitine metabolism [].; GO: 0006351 transcription, DNA-dependent
Probab=24.35 E-value=42 Score=25.34 Aligned_cols=21 Identities=52% Similarity=0.937 Sum_probs=18.3
Q ss_pred ccccCCCCCCccccccCCCCC
Q 034371 70 SKRRVPNGPDPIHNRRAGNSG 90 (96)
Q Consensus 70 SkRrvP~GPdPiHNR~~~~~~ 90 (96)
.+|++|.|||+..-|+-|+..
T Consensus 99 ~~~r~~~~p~~~~~rRvgNg~ 119 (146)
T PF07180_consen 99 IRRRVPAGPDNLTKRRVGNGM 119 (146)
T ss_pred CcccccCCCCCccceeecccc
Confidence 689999999999999887754
No 27
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=24.11 E-value=59 Score=22.17 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhh
Q 034371 13 ALAVGWLICLLLIGN 27 (96)
Q Consensus 13 ~v~~vg~V~lLlvg~ 27 (96)
=++++.+|+||++|+
T Consensus 8 elliIlvivlllFG~ 22 (81)
T PRK04598 8 QLLIIAVIVVLLFGT 22 (81)
T ss_pred HHHHHHHHHHHHhCc
Confidence 355666777788774
No 28
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=22.10 E-value=68 Score=21.83 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhh
Q 034371 14 LAVGWLICLLLIGN 27 (96)
Q Consensus 14 v~~vg~V~lLlvg~ 27 (96)
++++.+|+||++|.
T Consensus 9 llIIlvIvlLlFG~ 22 (75)
T PRK04561 9 WLVVLVIVLLVFGT 22 (75)
T ss_pred HHHHHHHHHHHhCC
Confidence 55666677888774
No 29
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=21.68 E-value=1.1e+02 Score=26.76 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 034371 6 SFKALFGALAVGWLICLLLI 25 (96)
Q Consensus 6 ~~~~l~~~v~~vg~V~lLlv 25 (96)
||-+||-++++.+++||++.
T Consensus 70 FfvaflvslVL~~l~~f~l~ 89 (429)
T PF12297_consen 70 FFVAFLVSLVLTWLCFFLLA 89 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777763
No 30
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.17 E-value=1.5e+02 Score=22.45 Aligned_cols=25 Identities=24% Similarity=0.005 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccC
Q 034371 7 FKALFGALAVGWLICLLLIGNLESG 31 (96)
Q Consensus 7 ~~~l~~~v~~vg~V~lLlvg~l~sg 31 (96)
+..++.+++.++++..|++.+|.++
T Consensus 9 l~~~~~~~~~~~~a~~L~l~al~~n 33 (160)
T PRK13165 9 LWLACAVLAGLALTIGLVLYALRSN 33 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344555566666788888888764
No 31
>COG3136 GlpM Uncharacterized membrane protein required for alginate biosynthesis [General function prediction only]
Probab=21.03 E-value=1.1e+02 Score=22.29 Aligned_cols=19 Identities=47% Similarity=0.560 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 034371 4 SLSFKALFGALAVGWLICL 22 (96)
Q Consensus 4 s~~~~~l~~~v~~vg~V~l 22 (96)
.+.+|+++|+++++-.++|
T Consensus 2 ~lv~K~~lGalvv~lI~~l 20 (111)
T COG3136 2 GLVIKALLGALVVLLIALL 20 (111)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 3678999999887655544
No 32
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=20.64 E-value=76 Score=22.21 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhh
Q 034371 13 ALAVGWLICLLLIGN 27 (96)
Q Consensus 13 ~v~~vg~V~lLlvg~ 27 (96)
-++++.+|+||++|+
T Consensus 8 eLlIIlvIvLLlFG~ 22 (89)
T PRK03554 8 QLLIIAVIVVLLFGT 22 (89)
T ss_pred HHHHHHHHHHHHhCc
Confidence 355666677777774
No 33
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=20.56 E-value=78 Score=20.50 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhh
Q 034371 13 ALAVGWLICLLLIGN 27 (96)
Q Consensus 13 ~v~~vg~V~lLlvg~ 27 (96)
=++++.+|.||++|.
T Consensus 8 ElliIlvv~LlvfGp 22 (63)
T PRK14859 8 ELIVILVIVLIVFGA 22 (63)
T ss_pred HHHHHHHHHHHHhCc
Confidence 456777777777775
Done!