Query 034371
Match_columns 96
No_of_seqs 31 out of 33
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 21:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1spf_A Pulmonary surfactant-as 62.5 11 0.00039 21.6 3.6 26 4-29 7-32 (35)
2 2knc_B Integrin beta-3; transm 39.7 22 0.00077 22.6 2.7 20 9-28 16-35 (79)
3 2gol_A Matrix protein P17 (MA) 30.3 25 0.00085 25.2 1.9 16 6-21 75-90 (133)
4 3u02_A Putative transcription- 29.5 16 0.00056 27.9 0.9 10 73-82 205-214 (252)
5 2k9j_B Integrin beta-3; transm 26.1 50 0.0017 18.9 2.4 19 10-28 16-34 (43)
6 2dw3_A Intrinsic membrane prot 25.2 67 0.0023 21.1 3.2 19 9-27 30-48 (77)
7 1ed1_A GAG polyprotein, SIV MA 23.8 48 0.0016 23.8 2.4 16 6-21 74-89 (135)
8 1l6n_A GAG polyprotein; matrix 22.1 50 0.0017 26.1 2.4 18 4-21 72-89 (289)
9 2l9u_A Receptor tyrosine-prote 20.1 65 0.0022 18.8 2.1 13 15-27 12-25 (40)
10 3j00_Z Cell division protein F 19.2 92 0.0031 20.4 2.9 19 10-28 4-22 (98)
No 1
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=62.47 E-value=11 Score=21.60 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhc
Q 034371 4 SLSFKALFGALAVGWLICLLLIGNLE 29 (96)
Q Consensus 4 s~~~~~l~~~v~~vg~V~lLlvg~l~ 29 (96)
-..+|.|+-.++++.++.+.++|+|-
T Consensus 7 p~~lKrLlivVvVvVlvVvVivGaLL 32 (35)
T 1spf_A 7 PVNLKRLLVVVVVVVLVVVVIVGALL 32 (35)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchheEEEEEeeehhhHHHHHHHHH
Confidence 34678888888888888888888873
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.73 E-value=22 Score=22.64 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 034371 9 ALFGALAVGWLICLLLIGNL 28 (96)
Q Consensus 9 ~l~~~v~~vg~V~lLlvg~l 28 (96)
..+++++++|+++||+.-.+
T Consensus 16 gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567778888877776555
No 3
>2gol_A Matrix protein P17 (MA); viral maturation, immature, GAG, HIV-1, viral protein; 2.20A {Human immunodeficiency virus 1} SCOP: a.61.1.1 PDB: 1hiw_A 2hmx_A 2h3f_A 2h3i_A* 2h3q_A* 2h3v_A* 2h3z_A* 1uph_A* 2nv3_A* 2jmg_A* 1tam_A
Probab=30.27 E-value=25 Score=25.24 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 034371 6 SFKALFGALAVGWLIC 21 (96)
Q Consensus 6 ~~~~l~~~v~~vg~V~ 21 (96)
-+|+||.+|+++.||=
T Consensus 75 eLkSL~NtvatLyCVH 90 (133)
T 2gol_A 75 ELRSLYNTIAVLYCVH 90 (133)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhheeeee
Confidence 5899999999999984
No 4
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=29.54 E-value=16 Score=27.91 Aligned_cols=10 Identities=40% Similarity=0.863 Sum_probs=8.2
Q ss_pred cCCCCCCccc
Q 034371 73 RVPNGPDPIH 82 (96)
Q Consensus 73 rvP~GPdPiH 82 (96)
=+|.||||+=
T Consensus 205 i~Ph~pdPVL 214 (252)
T 3u02_A 205 ITPHGKDPVL 214 (252)
T ss_dssp ECCCTTCSEE
T ss_pred EecCCCCCEE
Confidence 3799999973
No 5
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=26.06 E-value=50 Score=18.89 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 034371 10 LFGALAVGWLICLLLIGNL 28 (96)
Q Consensus 10 l~~~v~~vg~V~lLlvg~l 28 (96)
..++++++|+++||+.-.+
T Consensus 16 vi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 16 VMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566777788777765433
No 6
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=25.17 E-value=67 Score=21.07 Aligned_cols=19 Identities=11% Similarity=-0.213 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 034371 9 ALFGALAVGWLICLLLIGN 27 (96)
Q Consensus 9 ~l~~~v~~vg~V~lLlvg~ 27 (96)
+.++++++++.++++++..
T Consensus 30 Ag~AAv~f~~~~~~lv~l~ 48 (77)
T 2dw3_A 30 AGWAGGVFFGTLLLIGFFR 48 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 4556666666655555433
No 7
>1ed1_A GAG polyprotein, SIV MA; trimeric association, viral protein; 2.10A {Simian immunodeficiency virus - mac} SCOP: a.61.1.1 PDB: 1ecw_A 2k4e_A 2k4h_A* 2k4i_A*
Probab=23.77 E-value=48 Score=23.80 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 034371 6 SFKALFGALAVGWLIC 21 (96)
Q Consensus 6 ~~~~l~~~v~~vg~V~ 21 (96)
-+++||.+|+++.||=
T Consensus 74 eLkSL~ntva~LyCvH 89 (135)
T 1ed1_A 74 NLKSLYNTVCVIWCIH 89 (135)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhheeeEeE
Confidence 5899999999999984
No 8
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1
Probab=22.06 E-value=50 Score=26.07 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 034371 4 SLSFKALFGALAVGWLIC 21 (96)
Q Consensus 4 s~~~~~l~~~v~~vg~V~ 21 (96)
|--||+||.+|+++.||=
T Consensus 72 SeeLkSL~nTvavLyCVh 89 (289)
T 1l6n_A 72 SEELRSLYNTIAVLYCVH 89 (289)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHheee
Confidence 346899999999999985
No 9
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=20.07 E-value=65 Score=18.76 Aligned_cols=13 Identities=15% Similarity=0.593 Sum_probs=6.9
Q ss_pred HHHHH-HHHHHHhh
Q 034371 15 AVGWL-ICLLLIGN 27 (96)
Q Consensus 15 ~~vg~-V~lLlvg~ 27 (96)
+++|+ |+||++|+
T Consensus 12 ~i~gl~vif~~lg~ 25 (40)
T 2l9u_A 12 VIAGLVVIFMMLGG 25 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc
Confidence 44555 45666554
No 10
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=19.20 E-value=92 Score=20.37 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 034371 10 LFGALAVGWLICLLLIGNL 28 (96)
Q Consensus 10 l~~~v~~vg~V~lLlvg~l 28 (96)
|+|.++++.+++.|+.+..
T Consensus 4 ~~G~~F~l~Vl~~l~~~~~ 22 (98)
T 3j00_Z 4 LAGILFLLTVLTTVLVSGW 22 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHHHHHH
Confidence 4566666666655555543
Done!