Query 034371
Match_columns 96
No_of_seqs 31 out of 33
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 22:00:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034371.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034371hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ecwa_ a.61.1.1 (A:) SIV matr 34.5 12 0.00084 24.7 2.4 16 5-20 68-83 (114)
2 d2gola1 a.61.1.1 (A:7-107) HIV 32.0 11 0.00079 24.4 1.9 15 6-20 68-82 (101)
3 d1y5ic1 f.21.3.1 (C:1-225) Res 7.6 1.2E+02 0.009 19.7 2.6 15 10-24 96-110 (225)
4 d1gjia2 b.2.5.3 (A:7-181) p65 7.2 67 0.0049 21.6 1.0 12 76-87 163-174 (175)
5 d2h8pc1 f.14.1.1 (C:22-78) Pot 7.2 1.8E+02 0.013 15.9 2.8 21 7-28 5-25 (57)
6 d1ikna2 b.2.5.3 (A:19-191) p65 7.0 64 0.0047 21.6 0.8 12 77-88 161-172 (173)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 5.8 1.8E+02 0.013 14.2 2.0 10 16-25 3-12 (27)
8 d1kf6c_ f.21.2.2 (C:) Fumarate 5.5 2.3E+02 0.017 18.3 3.0 17 6-22 33-49 (130)
9 d1r3jc_ f.14.1.1 (C:) Potassiu 5.5 2.8E+02 0.021 15.5 3.7 16 4-19 2-17 (103)
10 d1a3qa2 b.2.5.3 (A:37-226) p52 5.2 1.1E+02 0.0077 20.7 1.1 12 78-89 172-183 (184)
No 1
>d1ecwa_ a.61.1.1 (A:) SIV matrix antigen {Simian immunodeficiency virus [TaxId: 11723]}
Probab=34.54 E-value=12 Score=24.68 Aligned_cols=16 Identities=31% Similarity=0.675 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 034371 5 LSFKALFGALAVGWLI 20 (96)
Q Consensus 5 ~~~~~l~~~v~~vg~V 20 (96)
--+|+||.+|+++.||
T Consensus 68 eeLkSL~ntvavLyCV 83 (114)
T d1ecwa_ 68 ENLKSLYNTVCVIWCI 83 (114)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhhhh
Confidence 3689999999999998
No 2
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=32.02 E-value=11 Score=24.40 Aligned_cols=15 Identities=20% Similarity=0.578 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHH
Q 034371 6 SFKALFGALAVGWLI 20 (96)
Q Consensus 6 ~~~~l~~~v~~vg~V 20 (96)
-+|+||.+|+++.||
T Consensus 68 eLkSL~ntvavLyCV 82 (101)
T d2gola1 68 ELRSLYNTIAVLYCV 82 (101)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHhHhhceeeEEEE
Confidence 679999999999997
No 3
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=7.61 E-value=1.2e+02 Score=19.74 Aligned_cols=15 Identities=27% Similarity=0.082 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 034371 10 LFGALAVGWLICLLL 24 (96)
Q Consensus 10 l~~~v~~vg~V~lLl 24 (96)
+++.++++|+++|+.
T Consensus 96 i~g~l~liG~~~ll~ 110 (225)
T d1y5ic1 96 ASGVLCLIGGVLLLK 110 (225)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666665554
No 4
>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]}
Probab=7.22 E-value=67 Score=21.59 Aligned_cols=12 Identities=33% Similarity=0.349 Sum_probs=9.0
Q ss_pred CCCCccccccCC
Q 034371 76 NGPDPIHNRRAG 87 (96)
Q Consensus 76 ~GPdPiHNR~~~ 87 (96)
==+|||||+++-
T Consensus 163 V~S~PI~d~Kap 174 (175)
T d1gjia2 163 LISNPIYDNRAP 174 (175)
T ss_dssp EECCCEEBTTST
T ss_pred eEccccccCCCC
Confidence 337999998763
No 5
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.21 E-value=1.8e+02 Score=15.91 Aligned_cols=21 Identities=29% Similarity=0.200 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 034371 7 FKALFGALAVGWLICLLLIGNL 28 (96)
Q Consensus 7 ~~~l~~~v~~vg~V~lLlvg~l 28 (96)
.|.+..+++++ ++++++.+++
T Consensus 5 ~R~~~~~~~~~-~i~i~~~s~~ 25 (57)
T d2h8pc1 5 WRAAGAATVLL-VIVLLAGSYL 25 (57)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHH
Confidence 34444444333 3333334444
No 6
>d1ikna2 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.01 E-value=64 Score=21.63 Aligned_cols=12 Identities=42% Similarity=0.548 Sum_probs=8.3
Q ss_pred CCCccccccCCC
Q 034371 77 GPDPIHNRRAGN 88 (96)
Q Consensus 77 GPdPiHNR~~~~ 88 (96)
=+|||||+++-+
T Consensus 161 ~S~pI~d~Ks~~ 172 (173)
T d1ikna2 161 LSHPIFDNRAPN 172 (173)
T ss_dssp ECCCEECCCC--
T ss_pred EecccccCcCCC
Confidence 469999988643
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.82 E-value=1.8e+02 Score=14.22 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 034371 16 VGWLICLLLI 25 (96)
Q Consensus 16 ~vg~V~lLlv 25 (96)
++|-|.||++
T Consensus 3 ~lgwv~llvv 12 (27)
T d2e74h1 3 VLGWVALLVV 12 (27)
T ss_dssp HHHHHHHHHH
T ss_pred chhHhHHHHH
Confidence 4455555543
No 8
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=5.52 E-value=2.3e+02 Score=18.28 Aligned_cols=17 Identities=18% Similarity=0.006 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 034371 6 SFKALFGALAVGWLICL 22 (96)
Q Consensus 6 ~~~~l~~~v~~vg~V~l 22 (96)
.+-++|..+.+.|+.||
T Consensus 33 v~~~~f~lvLl~Gl~~L 49 (130)
T d1kf6c_ 33 VPAVWFSIELIFGLFAL 49 (130)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 9
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.45 E-value=2.8e+02 Score=15.55 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHH
Q 034371 4 SLSFKALFGALAVGWL 19 (96)
Q Consensus 4 s~~~~~l~~~v~~vg~ 19 (96)
++..|.+..+++++-+
T Consensus 2 al~~r~~~~~~~~~~~ 17 (103)
T d1r3jc_ 2 ALHWRAAGAATVLLVI 17 (103)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4556666555555433
No 10
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.25 E-value=1.1e+02 Score=20.72 Aligned_cols=12 Identities=25% Similarity=0.684 Sum_probs=0.0
Q ss_pred CCccccccCCCC
Q 034371 78 PDPIHNRRAGNS 89 (96)
Q Consensus 78 PdPiHNR~~~~~ 89 (96)
+|||||.++-+.
T Consensus 172 S~pI~d~Ka~~~ 183 (184)
T d1a3qa2 172 SQPIHDSKSPGA 183 (184)
T ss_dssp CCCEEBTTSTTT
T ss_pred ecccccCcCCCC
Done!