BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034374
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of
Escherichia Coli, Northeast Structural Genomoics Target
Er58
Length = 184
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 10 LPVSHVIHTVGPVFNFHCNPED-ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDE 68
LP V+HTVGPV+ ED +L+ AY N L + AN+ +AFPAIS GV YP
Sbjct: 73 LPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAA 132
Query: 69 AATIAISTVKEF 80
AA IA+ TV EF
Sbjct: 133 AAEIAVKTVSEF 144
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7 GFKLPVSHVIHTVGPVFNFHCNPEDI--LRSAYKNCLSVGKANNIQYIAFPAISCGVSQY 64
G++LP +VIHTVGP+ + LRS Y + L + + ++ +AFP IS GV Y
Sbjct: 125 GYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGY 184
Query: 65 PPDEAATIAISTVKEFANDFKE 86
P + AA I ++T++E+ K+
Sbjct: 185 PCEAAAEIVLATLREWLEQHKD 206
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With
Adenosine-5- Diphosphoribose
Length = 214
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 9 KLPVSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
KLP HVIH VGP ++ + P +LR A + L + + + IA PAIS GV +P
Sbjct: 106 KLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPL 165
Query: 67 DEAATIAISTVKE 79
+S +KE
Sbjct: 166 GRCVETIVSAIKE 178
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
pdb|1ZR5|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
Length = 214
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 7 GFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
G LP VIH PV+ C E++L KNCL++ ++ IAFP+I G + +P
Sbjct: 107 GHGLPAKFVIHCNSPVWGADKC--EELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFP 164
Query: 66 PDEAATIAISTVKEF 80
AA + + + +
Sbjct: 165 KQTAAQLILKAISSY 179
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|C Chain C, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|D Chain D, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|2FXK|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|2FXK|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|3IID|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form A)
pdb|3IIF|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|B Chain B, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|C Chain C, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
Length = 211
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 7 GFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
G LP VIH PV+ C E++L KNCL++ ++ IAFP+I G + +P
Sbjct: 104 GHGLPAKFVIHCNSPVWGADKC--EELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFP 161
Query: 66 PDEAATIAISTVKEF 80
AA + + + +
Sbjct: 162 KQTAAQLILKAISSY 176
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|B Chain B, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|C Chain C, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|D Chain D, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1
Length = 193
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 7 GFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
G LP VIH PV+ C E++L KNCL++ ++ IAFP+I G + +P
Sbjct: 86 GHGLPAKFVIHCNSPVWGSDKC--EELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFP 143
Query: 66 PDEAATIAISTVKEF 80
AA + + + +
Sbjct: 144 KQTAAQLILKAISSY 158
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 8 FKLPVSHVIHTVGPVF-NFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
+ L +V+H V P + N + I+ + C+ + ++ +++ IAFPAI G +P
Sbjct: 107 WNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPK 166
Query: 67 DEAATIAISTVKEFA--NDFKEVSHDKFCL 94
+ A + IS V +F+ N K + F L
Sbjct: 167 NIFAELIISEVFKFSSKNQLKTLQEVHFLL 196
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 4 ECRGFKLPVSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGKANNIQYIAFPAISCGV 61
E RG K +V HTVGP+ + + E + L A+ L + ++ IAFPA+S G+
Sbjct: 89 EERGIK----YVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGI 144
Query: 62 SQYPPDEAATIAISTVKEF-ANDFKEVSH 89
++ ++ VK F + KEV+
Sbjct: 145 YGCDAEKVVETSLEAVKNFKGSAVKEVAE 173
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 4 ECRGFKLPVSHVIHTVGPVFN--FHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGV 61
+ R K H+IH VGP FN + L AY++ + NN + +A P +S G+
Sbjct: 56 KARLVKGAAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGI 115
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase
Length = 211
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 4 ECRGFKLPVSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGKANNIQYIAFPAISCGV 61
E RG K +V HTVGP+ + + E + L A+ L + ++ IAFPA+S G+
Sbjct: 98 EERGIK----YVFHTVGPICSGXWSEELKEKLYKAFLGPLEKAEEXGVESIAFPAVSAGI 153
Query: 62 SQYPPDEAATIAISTVKEF-ANDFKEVS 88
++ + VK F + KEV+
Sbjct: 154 YGCDLEKVVETFLEAVKNFKGSAVKEVA 181
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
pdb|1HJZ|B Chain B, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
Length = 192
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 4 ECRGFKLPVSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGKANNIQYIAFPAISCGV 61
E RG K +V HTVGP+ + + E + L A+ L + ++ IAFPA+S G+
Sbjct: 89 EERGIK----YVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGI 144
Query: 62 SQYPPDEAATIAISTVKEF-ANDFKEVS 88
++ + VK F + KEV+
Sbjct: 145 YGCDLEKVVETFLEAVKNFKGSAVKEVA 172
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module
pdb|2BFQ|A Chain A, Macro Domains Are Adp-Ribose Binding Molecules
Length = 192
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 4 ECRGFKLPVSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGKANNIQYIAFPAISCGV 61
E RG K +V HTVGP+ + + E + L A+ L + ++ IAFPA+S G+
Sbjct: 89 EERGIK----YVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGI 144
Query: 62 SQYPPDEAATIAISTVKEF-ANDFKEVS 88
++ + VK F + KEV+
Sbjct: 145 YGCDLEKVVETFLEAVKNFKGSAVKEVA 172
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
Length = 670
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 15 VIHTVGPVFNFHCNPE--DILRSAYKNCLSVGKANNIQYIAFPAISCGV 61
VIH VGP F H E +L++AY + +NI+ +A P +S G+
Sbjct: 407 VIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGI 455
>pdb|2XD7|A Chain A, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|B Chain B, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|C Chain C, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|D Chain D, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
Length = 193
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAND 83
E+ L KNCLS + ++ +AFP G + +P AA + + + +D
Sbjct: 111 EEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDD 164
>pdb|4ABK|A Chain A, Human Parp14 (Artd8, Bal2) - Macro Domain 3 In Complex
With Adenosine-5-Diphosphoribose
pdb|4ABL|A Chain A, Human Parp14 (Artd8, Bal2) - Macro Domain 3
Length = 183
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 7 GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
GF L ++IH +G + ++S+ + L + N I PAI G ++ P
Sbjct: 86 GF-LRCKNIIHVIGG---------NDVKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHP 135
Query: 67 DEAATIAISTVKEFANDFKEVSHDKFCLMI 96
D+ A I +++F S K ++I
Sbjct: 136 DKVAEAIIDAIEDFVQKGSAQSVKKVKVVI 165
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 44 GKANNIQYIAFPAISCGVSQYPPDEAATIAI 74
GK++ I+ +A I + Y P E ATI I
Sbjct: 685 GKSSYIKQVALITIMAQIGSYVPAEEATIGI 715
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,908,529
Number of Sequences: 62578
Number of extensions: 95714
Number of successful extensions: 223
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 17
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)