Query 034374
Match_columns 96
No_of_seqs 121 out of 1007
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 12:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 2.3E-35 5E-40 203.1 12.1 94 1-95 81-176 (186)
2 PRK04143 hypothetical protein; 100.0 1.9E-33 4.1E-38 202.2 11.8 95 1-95 150-247 (264)
3 cd02905 Macro_GDAP2_like Macro 100.0 2.3E-33 5E-38 185.8 9.8 81 1-81 58-140 (140)
4 cd02908 Macro_Appr_pase_like M 100.0 3E-31 6.5E-36 179.1 11.8 94 1-94 57-151 (165)
5 cd02907 Macro_Af1521_BAL_like 100.0 9.2E-31 2E-35 178.1 12.0 95 1-95 63-160 (175)
6 PRK00431 RNase III inhibitor; 100.0 4.5E-30 9.8E-35 174.8 11.6 95 1-95 64-159 (177)
7 cd02906 Macro_1 Macro domain, 100.0 4.1E-30 8.8E-35 171.3 9.2 78 1-78 67-147 (147)
8 COG2110 Predicted phosphatase 100.0 2.4E-29 5.2E-34 172.2 10.4 94 1-95 66-160 (179)
9 cd02903 Macro_BAL_like Macro d 100.0 2.1E-29 4.6E-34 165.8 9.6 78 1-80 60-137 (137)
10 KOG2633 Hismacro and SEC14 dom 99.9 3.1E-26 6.6E-31 158.4 9.9 94 1-95 84-178 (200)
11 cd03330 Macro_2 Macro domain, 99.9 1.4E-24 3.1E-29 141.7 9.6 76 1-77 57-132 (133)
12 PF01661 Macro: Macro domain; 99.9 5.4E-24 1.2E-28 134.8 7.9 73 1-73 44-118 (118)
13 cd02900 Macro_Appr_pase Macro 99.9 3.7E-22 7.9E-27 137.6 9.8 81 1-81 93-186 (186)
14 PRK13341 recombination factor 99.9 2.9E-23 6.3E-28 165.7 -1.7 89 6-95 592-690 (725)
15 smart00506 A1pp Appr-1"-p proc 99.8 5.8E-21 1.3E-25 123.3 8.5 73 1-73 60-133 (133)
16 cd02749 Macro Macro domain, a 99.8 1.5E-19 3.3E-24 118.6 9.3 77 1-77 61-146 (147)
17 cd02901 Macro_Poa1p_like Macro 99.7 9.9E-17 2.1E-21 105.1 8.9 78 2-79 62-139 (140)
18 PHA02595 tk.4 hypothetical pro 99.2 1.8E-10 4E-15 77.2 9.0 72 4-76 67-140 (154)
19 TIGR02452 conserved hypothetic 98.3 4.7E-06 1E-10 60.5 8.5 79 15-93 164-253 (266)
20 PF14519 Macro_2: Macro-like d 98.1 1.4E-05 2.9E-10 58.4 7.3 73 9-82 134-215 (280)
21 COG4295 Uncharacterized protei 97.4 0.0016 3.6E-08 46.4 8.0 65 30-94 199-263 (285)
22 PF10154 DUF2362: Uncharacteri 95.9 0.072 1.6E-06 42.1 8.6 81 2-82 377-465 (510)
23 cd03331 Macro_Poa1p_like_SNF2 95.8 0.098 2.1E-06 35.1 7.7 63 13-76 82-148 (152)
24 PHA00684 hypothetical protein 83.3 6.7 0.00014 25.7 5.8 49 29-77 54-102 (128)
25 PLN02214 cinnamoyl-CoA reducta 83.2 2.9 6.3E-05 30.7 4.8 40 12-54 82-124 (342)
26 CHL00194 ycf39 Ycf39; Provisio 82.1 16 0.00036 26.3 8.3 43 12-54 65-107 (317)
27 PRK06052 5-methyltetrahydropte 81.6 15 0.00032 28.0 8.0 46 30-75 141-189 (344)
28 PF01073 3Beta_HSD: 3-beta hyd 81.0 6.5 0.00014 28.4 5.8 43 12-54 67-113 (280)
29 PLN02657 3,8-divinyl protochlo 80.9 22 0.00047 26.9 9.2 44 11-54 136-179 (390)
30 PRK15181 Vi polysaccharide bio 79.9 14 0.0003 27.1 7.4 45 12-56 91-140 (348)
31 PF13460 NAD_binding_10: NADH( 79.6 14 0.00031 24.0 7.2 36 11-54 60-95 (183)
32 PRK09358 adenosine deaminase; 78.4 24 0.00052 25.9 8.3 64 29-94 75-141 (340)
33 PRK14837 undecaprenyl pyrophos 77.9 5.5 0.00012 28.6 4.5 50 31-81 33-82 (230)
34 COG2388 Predicted acetyltransf 77.8 4 8.7E-05 25.5 3.4 41 13-56 40-80 (99)
35 KOG1502 Flavonol reductase/cin 77.1 7.5 0.00016 29.3 5.2 43 12-54 79-126 (327)
36 PRK14827 undecaprenyl pyrophos 75.9 20 0.00043 26.7 7.1 41 33-73 96-136 (296)
37 cd00475 CIS_IPPS Cis (Z)-Isopr 75.4 7.5 0.00016 27.6 4.7 50 32-82 28-77 (221)
38 TIGR00055 uppS undecaprenyl di 74.4 7.8 0.00017 27.7 4.5 50 32-82 27-76 (226)
39 PRK14828 undecaprenyl pyrophos 73.6 26 0.00056 25.5 7.1 48 34-82 57-104 (256)
40 PRK14842 undecaprenyl pyrophos 73.0 8.5 0.00018 27.7 4.5 50 32-82 36-85 (241)
41 PRK14833 undecaprenyl pyrophos 72.6 9 0.0002 27.5 4.5 50 32-82 32-81 (233)
42 PLN02778 3,5-epimerase/4-reduc 71.7 9.5 0.00021 27.5 4.6 44 11-54 57-108 (298)
43 PRK14831 undecaprenyl pyrophos 70.6 11 0.00023 27.3 4.6 41 32-72 48-88 (249)
44 PRK14841 undecaprenyl pyrophos 70.4 10 0.00023 27.1 4.4 50 31-81 30-79 (233)
45 PRK14829 undecaprenyl pyrophos 70.2 12 0.00026 26.9 4.8 49 32-81 42-90 (243)
46 PRK14840 undecaprenyl pyrophos 69.8 11 0.00024 27.3 4.5 47 34-81 52-98 (250)
47 PLN02662 cinnamyl-alcohol dehy 69.4 22 0.00048 25.3 6.0 43 12-54 77-124 (322)
48 PRK14832 undecaprenyl pyrophos 68.9 12 0.00025 27.2 4.5 49 32-81 46-94 (253)
49 PRK14838 undecaprenyl pyrophos 68.5 12 0.00027 26.9 4.5 51 31-82 37-87 (242)
50 PTZ00325 malate dehydrogenase; 68.2 20 0.00043 26.7 5.7 43 12-54 77-122 (321)
51 cd03311 CIMS_C_terminal_like C 68.1 45 0.00097 24.4 8.2 64 31-95 151-217 (332)
52 PRK14839 undecaprenyl pyrophos 68.1 13 0.00028 26.8 4.5 49 32-81 37-85 (239)
53 PF01255 Prenyltransf: Putativ 67.7 13 0.00029 26.1 4.5 46 35-81 25-70 (223)
54 PRK10240 undecaprenyl pyrophos 66.9 15 0.00032 26.3 4.6 48 34-82 23-70 (229)
55 PRK14834 undecaprenyl pyrophos 66.0 17 0.00038 26.3 4.9 49 32-81 42-90 (249)
56 KOG1602 Cis-prenyltransferase 65.8 14 0.00029 27.2 4.2 42 32-73 64-105 (271)
57 PRK14830 undecaprenyl pyrophos 65.6 44 0.00095 24.2 6.9 44 30-73 48-91 (251)
58 PTZ00372 endonuclease 4-like p 65.5 63 0.0014 25.2 8.6 57 31-89 214-271 (413)
59 PRK14835 undecaprenyl pyrophos 65.1 17 0.00037 26.7 4.7 48 33-81 70-117 (275)
60 PTZ00349 dehydrodolichyl dipho 64.5 16 0.00034 27.6 4.5 43 31-73 46-88 (322)
61 PRK06520 5-methyltetrahydropte 64.2 61 0.0013 24.5 8.1 66 30-95 165-243 (368)
62 TIGR03234 OH-pyruv-isom hydrox 63.8 47 0.001 23.1 7.4 51 31-82 80-130 (254)
63 PLN02986 cinnamyl-alcohol dehy 61.7 32 0.00069 24.6 5.7 44 12-55 78-126 (322)
64 PLN02725 GDP-4-keto-6-deoxyman 61.4 21 0.00045 25.1 4.6 43 11-54 49-98 (306)
65 KOG3716 Carnitine O-acyltransf 61.3 21 0.00045 29.7 4.9 55 23-77 511-568 (764)
66 KOG1097 Adenine deaminase/aden 57.4 91 0.002 24.3 7.9 63 30-94 116-184 (399)
67 PRK14836 undecaprenyl pyrophos 57.3 23 0.00049 25.7 4.2 51 30-81 40-90 (253)
68 COG1252 Ndh NADH dehydrogenase 57.2 87 0.0019 24.3 7.6 84 8-91 96-196 (405)
69 COG0451 WcaG Nucleoside-diphos 57.1 32 0.0007 24.0 5.0 42 13-54 66-113 (314)
70 cd00443 ADA_AMPD Adenosine/AMP 55.4 79 0.0017 23.0 9.2 57 29-85 40-99 (305)
71 PF10719 ComFB: Late competenc 54.4 14 0.0003 22.0 2.3 18 8-25 39-56 (85)
72 PRK04326 methionine synthase; 51.9 92 0.002 22.8 7.9 58 31-95 157-216 (330)
73 PRK09121 5-methyltetrahydropte 51.6 99 0.0021 23.1 7.0 59 31-95 152-212 (339)
74 KOG4506 Uncharacterized conser 51.4 21 0.00045 28.0 3.3 60 2-61 422-484 (598)
75 PF09039 HTH_Tnp_Mu_2: Mu DNA 51.1 10 0.00022 24.0 1.4 26 31-59 49-74 (108)
76 TIGR02171 Fb_sc_TIGR02171 Fibr 51.0 87 0.0019 27.0 7.0 52 34-85 807-866 (912)
77 cd01837 SGNH_plant_lipase_like 48.5 1E+02 0.0022 22.3 8.0 25 31-55 160-184 (315)
78 COG0020 UppS Undecaprenyl pyro 48.2 75 0.0016 23.0 5.6 42 30-71 42-83 (245)
79 COG0620 MetE Methionine syntha 48.0 1.2E+02 0.0025 22.8 8.1 66 30-95 153-221 (330)
80 PRK10810 anti-sigma28 factor F 47.3 27 0.00059 21.9 2.8 28 56-83 70-97 (98)
81 PF02789 Peptidase_M17_N: Cyto 47.2 65 0.0014 19.7 6.4 47 29-78 67-113 (126)
82 PF08149 BING4CT: BING4CT (NUC 46.7 7.5 0.00016 23.5 0.3 47 37-85 20-72 (80)
83 smart00701 PGRP Animal peptido 45.9 83 0.0018 20.5 7.3 73 8-81 20-124 (142)
84 PRK01060 endonuclease IV; Prov 45.6 1E+02 0.0023 21.6 9.1 59 30-91 84-144 (281)
85 PF05378 Hydant_A_N: Hydantoin 45.2 52 0.0011 22.2 4.3 27 35-61 134-160 (176)
86 COG3623 SgaU Putative L-xylulo 44.2 36 0.00078 25.0 3.4 27 29-55 90-116 (287)
87 cd03312 CIMS_N_terminal_like C 44.2 1.4E+02 0.003 22.6 7.7 62 30-95 177-240 (360)
88 PF06908 DUF1273: Protein of u 44.0 70 0.0015 21.8 4.8 56 28-92 22-77 (177)
89 TIGR01777 yfcH conserved hypot 43.7 90 0.002 21.5 5.5 40 11-50 57-103 (292)
90 COG0648 Nfo Endonuclease IV [D 43.5 1.3E+02 0.0029 22.2 8.9 51 30-83 82-133 (280)
91 PRK09997 hydroxypyruvate isome 43.5 1.1E+02 0.0024 21.3 7.3 61 30-91 80-142 (258)
92 COG0496 SurE Predicted acid ph 42.5 1.3E+02 0.0029 21.9 6.3 54 30-83 99-155 (252)
93 TIGR02197 heptose_epim ADP-L-g 42.1 76 0.0016 22.3 4.9 43 11-54 66-111 (314)
94 PF14542 Acetyltransf_CG: GCN5 41.1 73 0.0016 18.5 4.7 39 14-55 24-62 (78)
95 TIGR01371 met_syn_B12ind 5-met 40.7 2.2E+02 0.0048 23.9 8.3 66 30-95 570-640 (750)
96 PLN02475 5-methyltetrahydropte 38.5 2.2E+02 0.0047 24.1 7.6 62 30-95 181-244 (766)
97 PLN02240 UDP-glucose 4-epimera 37.9 1.1E+02 0.0024 21.9 5.4 45 11-55 81-130 (352)
98 PF05924 SAMP: SAMP Motif; In 37.6 12 0.00025 16.8 0.1 12 30-41 3-14 (20)
99 PRK11150 rfaD ADP-L-glycero-D- 37.2 1.2E+02 0.0026 21.4 5.4 39 11-50 68-110 (308)
100 PRK12677 xylose isomerase; Pro 36.2 2E+02 0.0042 22.0 7.3 46 34-82 113-164 (384)
101 PTZ00124 adenosine deaminase; 35.4 2E+02 0.0043 21.9 9.0 54 30-83 101-157 (362)
102 PF01261 AP_endonuc_2: Xylose 35.3 65 0.0014 21.0 3.5 44 10-54 83-130 (213)
103 PF01399 PCI: PCI domain; Int 35.3 90 0.0019 18.1 3.9 46 32-79 42-87 (105)
104 PLN02869 fatty aldehyde decarb 35.1 56 0.0012 26.9 3.6 39 20-58 365-406 (620)
105 KOG1576 Predicted oxidoreducta 35.1 73 0.0016 24.0 3.9 58 21-81 243-308 (342)
106 cd00465 URO-D_CIMS_like The UR 35.1 1.7E+02 0.0036 20.9 8.1 61 35-95 144-208 (306)
107 PF04316 FlgM: Anti-sigma-28 f 34.7 31 0.00067 18.9 1.6 21 56-76 36-56 (57)
108 PLN00106 malate dehydrogenase 34.6 1.7E+02 0.0036 21.9 5.9 43 12-54 87-132 (323)
109 COG0113 HemB Delta-aminolevuli 34.5 1E+02 0.0022 23.4 4.6 46 37-82 63-115 (330)
110 PRK09856 fructoselysine 3-epim 34.1 1.6E+02 0.0036 20.5 8.0 52 30-82 85-136 (275)
111 PF04273 DUF442: Putative phos 33.9 1E+02 0.0022 19.3 4.0 43 42-93 51-93 (110)
112 PF05189 RTC_insert: RNA 3'-te 33.3 52 0.0011 20.0 2.6 25 59-83 78-102 (103)
113 PF05941 Chordopox_A20R: Chord 33.3 89 0.0019 23.8 4.2 36 56-95 96-131 (334)
114 PRK06914 short chain dehydroge 33.1 1.7E+02 0.0036 20.3 8.1 13 11-23 81-93 (280)
115 smart00481 POLIIIAc DNA polyme 33.0 61 0.0013 17.8 2.7 22 37-58 17-38 (67)
116 PRK14338 (dimethylallyl)adenos 32.9 2E+02 0.0043 22.4 6.3 57 4-65 161-217 (459)
117 PF13353 Fer4_12: 4Fe-4S singl 32.8 21 0.00046 22.3 0.8 49 3-54 10-58 (139)
118 PF07082 DUF1350: Protein of u 32.8 2E+02 0.0043 21.0 6.5 62 12-82 16-77 (250)
119 cd01320 ADA Adenosine deaminas 32.8 1.9E+02 0.0041 20.9 8.8 54 30-84 68-124 (325)
120 PRK13210 putative L-xylulose 5 32.6 1.7E+02 0.0038 20.4 7.5 52 30-82 89-140 (284)
121 PF03681 UPF0150: Uncharacteri 32.1 80 0.0017 16.3 3.1 37 46-82 10-47 (48)
122 PLN02695 GDP-D-mannose-3',5'-e 31.5 1.5E+02 0.0034 21.9 5.3 44 11-54 85-134 (370)
123 TIGR01430 aden_deam adenosine 31.4 2.1E+02 0.0044 20.8 9.2 56 29-85 66-124 (324)
124 TIGR03275 methan_mark_8 putati 30.2 1.6E+02 0.0035 21.6 4.9 43 39-94 153-195 (259)
125 TIGR00587 nfo apurinic endonuc 29.9 2.1E+02 0.0045 20.4 8.2 55 32-89 85-140 (274)
126 PLN00198 anthocyanidin reducta 29.7 2.1E+02 0.0046 20.5 9.6 43 12-54 81-128 (338)
127 cd03310 CIMS_like CIMS - Cobal 29.6 2.2E+02 0.0047 20.5 6.6 33 31-63 147-181 (321)
128 PRK05086 malate dehydrogenase; 29.1 2.4E+02 0.0051 20.8 8.1 63 12-80 70-135 (312)
129 PF06368 Met_asp_mut_E: Methyl 29.1 1.6E+02 0.0034 23.3 5.0 51 43-96 198-253 (441)
130 COG0375 HybF Zn finger protein 28.7 1.6E+02 0.0036 18.9 5.3 50 31-80 5-54 (115)
131 KOG1577 Aldo/keto reductase fa 28.3 46 0.00099 24.9 2.0 28 52-79 13-40 (300)
132 TIGR01503 MthylAspMut_E methyl 28.0 2.9E+02 0.0062 22.2 6.3 51 43-96 237-292 (480)
133 PRK07201 short chain dehydroge 27.9 1.4E+02 0.003 23.7 4.8 43 11-54 77-122 (657)
134 COG0279 GmhA Phosphoheptose is 27.9 82 0.0018 21.8 3.0 24 36-63 124-147 (176)
135 PLN02427 UDP-apiose/xylose syn 27.9 1.5E+02 0.0033 21.8 4.8 42 12-54 87-133 (386)
136 PRK13209 L-xylulose 5-phosphat 27.8 2.2E+02 0.0047 20.0 7.1 52 30-82 94-145 (283)
137 PF02563 Poly_export: Polysacc 27.8 50 0.0011 19.2 1.8 33 50-82 39-72 (82)
138 PF06528 Phage_P2_GpE: Phage P 27.4 44 0.00095 17.4 1.3 22 61-82 7-28 (39)
139 PF01975 SurE: Survival protei 27.2 1.4E+02 0.003 20.6 4.1 52 31-82 108-160 (196)
140 TIGR00542 hxl6Piso_put hexulos 27.0 2.3E+02 0.005 19.9 6.9 27 30-56 89-115 (279)
141 PRK07475 hypothetical protein; 26.9 1.7E+02 0.0038 20.7 4.7 26 31-56 61-86 (245)
142 PF15162 DUF4580: Domain of un 26.7 1.5E+02 0.0032 20.3 4.0 48 44-92 34-81 (162)
143 PRK14567 triosephosphate isome 26.5 2.2E+02 0.0048 20.7 5.2 67 15-83 121-194 (253)
144 PF07611 DUF1574: Protein of u 26.2 99 0.0022 23.5 3.5 29 35-63 252-281 (345)
145 KOG1707 Predicted Ras related/ 26.1 75 0.0016 26.1 2.9 39 9-47 168-207 (625)
146 TIGR03589 PseB UDP-N-acetylglu 25.7 2.6E+02 0.0057 20.2 10.4 43 12-54 75-122 (324)
147 COG1453 Predicted oxidoreducta 25.7 2.5E+02 0.0054 21.9 5.5 54 38-91 186-249 (391)
148 PF06574 FAD_syn: FAD syntheta 25.6 1E+02 0.0022 20.4 3.2 21 34-54 22-42 (157)
149 COG1086 Predicted nucleoside-d 25.6 2.2E+02 0.0048 23.4 5.4 56 10-67 324-384 (588)
150 PF07993 NAD_binding_4: Male s 25.6 1.6E+02 0.0035 20.4 4.3 39 12-50 88-128 (249)
151 PRK00164 moaA molybdenum cofac 25.6 90 0.0019 22.8 3.1 48 3-54 22-71 (331)
152 cd04824 eu_ALAD_PBGS_cysteine_ 25.4 2.3E+02 0.0051 21.4 5.2 46 37-82 53-106 (320)
153 PLN02260 probable rhamnose bio 25.1 1.5E+02 0.0033 23.9 4.5 44 11-54 428-479 (668)
154 cd00019 AP2Ec AP endonuclease 25.0 2.5E+02 0.0054 19.7 8.3 52 30-83 80-131 (279)
155 PLN02650 dihydroflavonol-4-red 24.9 2.7E+02 0.0059 20.1 9.7 44 12-55 78-126 (351)
156 TIGR02631 xylA_Arthro xylose i 24.7 3E+02 0.0066 21.0 5.9 46 31-80 112-163 (382)
157 PF01370 Epimerase: NAD depend 24.7 84 0.0018 20.9 2.7 53 12-65 66-123 (236)
158 TIGR03466 HpnA hopanoid-associ 24.7 2E+02 0.0043 20.2 4.7 43 12-54 65-110 (328)
159 TIGR01578 MiaB-like-B MiaB-lik 24.6 2.1E+02 0.0045 21.9 5.0 58 4-66 139-196 (420)
160 PF07302 AroM: AroM protein; 24.4 1.9E+02 0.004 20.7 4.4 33 29-63 68-100 (221)
161 PRK10675 UDP-galactose-4-epime 24.4 2.7E+02 0.0058 19.8 5.5 44 11-54 73-121 (338)
162 KOG2495 NADH-dehydrogenase (ub 24.3 3.8E+02 0.0082 21.6 7.4 84 8-91 155-260 (491)
163 COG1867 TRM1 N2,N2-dimethylgua 24.1 91 0.002 24.2 2.9 22 12-33 263-284 (380)
164 PF00962 A_deaminase: Adenosin 24.1 2.8E+02 0.0061 20.0 7.5 63 29-91 72-139 (331)
165 PF13580 SIS_2: SIS domain; PD 24.0 93 0.002 19.8 2.6 19 37-55 119-137 (138)
166 PRK11908 NAD-dependent epimera 23.5 2E+02 0.0043 20.8 4.6 43 11-54 68-115 (347)
167 PRK15381 pathogenicity island 23.4 3.6E+02 0.0078 21.0 6.9 65 31-95 257-334 (408)
168 COG1737 RpiR Transcriptional r 23.2 90 0.0019 22.5 2.7 21 37-57 193-213 (281)
169 PF12909 DUF3832: Protein of u 23.0 1E+02 0.0022 18.8 2.6 38 45-82 14-51 (89)
170 KOG3997 Major apurinic/apyrimi 22.8 3.1E+02 0.0068 20.1 7.4 73 13-91 72-144 (281)
171 PRK13384 delta-aminolevulinic 22.6 2.7E+02 0.0058 21.2 5.1 46 37-82 63-113 (322)
172 PLN02996 fatty acyl-CoA reduct 22.2 2.5E+02 0.0054 22.0 5.1 42 12-54 113-158 (491)
173 PRK12829 short chain dehydroge 22.1 2.6E+02 0.0057 18.9 9.1 12 11-22 86-97 (264)
174 PLN02951 Molybderin biosynthes 21.9 3.6E+02 0.0078 20.4 5.9 48 3-54 63-112 (373)
175 COG4451 RbcS Ribulose bisphosp 21.9 1E+02 0.0022 20.1 2.4 63 31-93 22-91 (127)
176 PRK09987 dTDP-4-dehydrorhamnos 21.7 3.1E+02 0.0066 19.5 5.4 42 11-52 54-100 (299)
177 PLN02206 UDP-glucuronate decar 21.7 1.8E+02 0.0038 22.5 4.1 42 11-52 183-229 (442)
178 PLN02166 dTDP-glucose 4,6-dehy 21.6 2.5E+02 0.0054 21.6 5.0 43 10-52 183-230 (436)
179 COG0776 HimA Bacterial nucleoi 21.4 2.1E+02 0.0046 17.6 4.2 30 66-95 22-51 (94)
180 PRK06233 hypothetical protein; 21.4 3.7E+02 0.008 20.3 7.7 66 30-95 166-245 (372)
181 cd03527 RuBisCO_small Ribulose 21.0 2.2E+02 0.0048 17.7 3.8 23 71-93 60-84 (99)
182 TIGR03271 methan_mark_5 putati 21.0 1.1E+02 0.0024 20.3 2.5 23 62-84 119-142 (142)
183 cd04795 SIS SIS domain. SIS (S 20.7 1.3E+02 0.0029 16.7 2.7 19 37-55 63-81 (87)
184 PF15513 DUF4651: Domain of un 20.6 1.9E+02 0.004 16.6 3.5 24 71-94 5-28 (62)
185 PF02811 PHP: PHP domain; Int 20.6 1.1E+02 0.0024 19.4 2.5 19 39-57 20-38 (175)
186 PF15012 DUF4519: Domain of un 20.5 31 0.00067 19.4 -0.1 15 45-59 26-40 (56)
187 PF00289 CPSase_L_chain: Carba 20.5 1.2E+02 0.0027 18.8 2.6 18 37-54 14-31 (110)
188 COG1093 SUI2 Translation initi 20.4 1.4E+02 0.0031 22.0 3.2 34 13-49 222-255 (269)
189 PRK00865 glutamate racemase; P 20.4 3.3E+02 0.0071 19.4 6.5 33 28-60 47-79 (261)
190 cd08481 PBP2_GcdR_like The C-t 20.3 1.9E+02 0.0042 17.7 3.6 30 63-92 5-34 (194)
191 TIGR02109 PQQ_syn_pqqE coenzym 20.1 1.8E+02 0.004 21.4 3.9 48 3-54 12-59 (358)
192 PF13982 YbfN: YbfN-like lipop 20.0 97 0.0021 18.9 1.9 18 29-46 7-24 (89)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=2.3e-35 Score=203.06 Aligned_cols=94 Identities=23% Similarity=0.450 Sum_probs=84.8
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
|+++|+||+||||||||+|||.|+.+ +++++|++||++||++|++++++|||||+||||++|||++++|++|++++++|
T Consensus 81 ~~~iT~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~ 159 (186)
T cd02904 81 GAAVSQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSY 159 (186)
T ss_pred CEEEccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHH
Confidence 68899999999999999999999654 45789999999999999999999999999999999999999999999999999
Q ss_pred HhcC--CceEEEEEeee
Q 034374 81 ANDF--KEVSHDKFCLM 95 (96)
Q Consensus 81 ~~~~--~~v~~Vi~~~~ 95 (96)
+++. ++++.|+|++|
T Consensus 160 l~~~~~~~l~~I~fv~~ 176 (186)
T cd02904 160 FVSTMSSSIKQIYFVLF 176 (186)
T ss_pred HHhcCCCCccEEEEEEC
Confidence 9863 34666666665
No 2
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=202.20 Aligned_cols=95 Identities=36% Similarity=0.552 Sum_probs=87.9
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC---CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV 77 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i 77 (96)
+|++|+||+||||||||+|||.|+.+. ++.++|++||++||++|+++|++|||||+||||++|||++++|++|++++
T Consensus 150 ~a~iT~~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv 229 (264)
T PRK04143 150 QAKITRAYNLPAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTV 229 (264)
T ss_pred eEEEecCCCCCCCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999998742 56789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEEEeee
Q 034374 78 KEFANDFKEVSHDKFCLM 95 (96)
Q Consensus 78 ~~~~~~~~~v~~Vi~~~~ 95 (96)
++|++..+....|+|++|
T Consensus 230 ~~fl~~~~~~~~Vif~vf 247 (264)
T PRK04143 230 LSWLKENPSKLKVVFNVF 247 (264)
T ss_pred HHHHHhCCCCCEEEEEEc
Confidence 999998776567888887
No 3
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=2.3e-33 Score=185.76 Aligned_cols=81 Identities=40% Similarity=0.665 Sum_probs=76.9
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 78 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~ 78 (96)
|+++|++|+|+||||||+|||.|+.+. +.+++|++||+++|++|++++++|||||+||||++|||++++|++|+++++
T Consensus 58 ~~~~T~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~ 137 (140)
T cd02905 58 EAKLTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVR 137 (140)
T ss_pred cEEEecCCCCCccEEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999875 347899999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 034374 79 EFA 81 (96)
Q Consensus 79 ~~~ 81 (96)
+|+
T Consensus 138 ~~l 140 (140)
T cd02905 138 RFL 140 (140)
T ss_pred HhC
Confidence 995
No 4
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=99.97 E-value=3e-31 Score=179.12 Aligned_cols=94 Identities=43% Similarity=0.669 Sum_probs=84.5
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
++++|++|+|+|+||||++||.|+.+. ++.+.|+++|+++|+.|++++++|||||+||||++|||++++|++|++++++
T Consensus 57 ~~v~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~ 136 (165)
T cd02908 57 EAVITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVRE 136 (165)
T ss_pred CEEEeeCCCCCCCEEEEEcCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999998763 6788999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEEEee
Q 034374 80 FANDFKEVSHDKFCL 94 (96)
Q Consensus 80 ~~~~~~~v~~Vi~~~ 94 (96)
|+++.+.+..|.|++
T Consensus 137 fl~~~~~l~~V~~v~ 151 (165)
T cd02908 137 FLEEHDAIERVIFVC 151 (165)
T ss_pred HHhcCCCCCEEEEEe
Confidence 998644444444444
No 5
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=99.97 E-value=9.2e-31 Score=178.06 Aligned_cols=95 Identities=26% Similarity=0.326 Sum_probs=84.6
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 78 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~ 78 (96)
++++|++|+|+||||||+|+|.|+.++ ++.+.|+++|++||++|.+++++|||||+||||.+|||++++|++|+++++
T Consensus 63 ~~~~T~~~~L~~k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~ 142 (175)
T cd02907 63 EVVVTSAGKLPCKYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVK 142 (175)
T ss_pred cEEEecCCCCCCCEEEEeCCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999998874 567899999999999999999999999999999999999999999999999
Q ss_pred HHHhcC-CceEEEEEeee
Q 034374 79 EFANDF-KEVSHDKFCLM 95 (96)
Q Consensus 79 ~~~~~~-~~v~~Vi~~~~ 95 (96)
+|+++. ..++.|.|++|
T Consensus 143 ~fl~~~~~~l~~I~~v~~ 160 (175)
T cd02907 143 EFLETKGSALKEIYLVDY 160 (175)
T ss_pred HHHHhcCCCccEEEEEEC
Confidence 999864 23444444443
No 6
>PRK00431 RNase III inhibitor; Provisional
Probab=99.97 E-value=4.5e-30 Score=174.83 Aligned_cols=95 Identities=40% Similarity=0.550 Sum_probs=85.3
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
++++|++|+|+||||||+|||.|+.+. .+.+.|+++|+++|+.|++++++|||||+||||++|+|++++|++|++++++
T Consensus 64 ~~~~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~ 143 (177)
T PRK00431 64 EAVITSAGRLPAKYVIHTVGPVWRGGEDNEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVRE 143 (177)
T ss_pred eEEEecCCCCCCCEEEEecCCeecCCCCcHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999998765 4678999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEEEeee
Q 034374 80 FANDFKEVSHDKFCLM 95 (96)
Q Consensus 80 ~~~~~~~v~~Vi~~~~ 95 (96)
|+++.+.++.|.||+|
T Consensus 144 f~~~~~~l~~I~~v~~ 159 (177)
T PRK00431 144 FLTRHKSPEEVYFVCY 159 (177)
T ss_pred HHhcCCCcCEEEEEEC
Confidence 9876655555555543
No 7
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=99.97 E-value=4.1e-30 Score=171.28 Aligned_cols=78 Identities=40% Similarity=0.627 Sum_probs=73.6
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC---CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV 77 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i 77 (96)
||++|++|+|+||||||+|||.|+.+. ++.+.|++||+++|+.|++++++|||||+||||++|||++++|+++++++
T Consensus 67 ~a~~T~~~~L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v 146 (147)
T cd02906 67 QAKITPGYNLPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTV 146 (147)
T ss_pred eEEEEeCCCCCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999998764 46789999999999999999999999999999999999999999999987
Q ss_pred H
Q 034374 78 K 78 (96)
Q Consensus 78 ~ 78 (96)
+
T Consensus 147 ~ 147 (147)
T cd02906 147 L 147 (147)
T ss_pred C
Confidence 4
No 8
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=99.96 E-value=2.4e-29 Score=172.18 Aligned_cols=94 Identities=34% Similarity=0.557 Sum_probs=88.1
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
||++|++|+|++|||||++||.|.++. .+.+.|+++|+++|++|+++|++|||||+||||++|+|++++++++++++++
T Consensus 66 ~Avit~~~~l~a~~ViH~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~ 145 (179)
T COG2110 66 EAVITEAGRLPAKYVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKD 145 (179)
T ss_pred EEEEccCcCCCCCEEEecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999998876 5678999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEEEeee
Q 034374 80 FANDFKEVSHDKFCLM 95 (96)
Q Consensus 80 ~~~~~~~v~~Vi~~~~ 95 (96)
|+.. ..++.|+|++|
T Consensus 146 ~~~~-~~~~~v~~v~~ 160 (179)
T COG2110 146 FLPE-ASIETVIFVVY 160 (179)
T ss_pred hccc-ccccEEEEEec
Confidence 9987 67778888776
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=99.96 E-value=2.1e-29 Score=165.84 Aligned_cols=78 Identities=29% Similarity=0.420 Sum_probs=74.5
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
|+++|++|+|+||||||+++|.|..+ +.+.|+++|++||+.|++++++|||||+||||.+|||++++|++|++++++|
T Consensus 60 ~~~vT~~~~L~~k~IiH~~~p~~~~~--~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 60 SVIVTKGGNLPCKYVYHVVLPNWSNG--ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred eEEEecCCCCCCCEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 57899999999999999999999865 6789999999999999999999999999999999999999999999999987
No 10
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=3.1e-26 Score=158.41 Aligned_cols=94 Identities=35% Similarity=0.528 Sum_probs=83.6
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
||++|++++||||+|||+|||.|.... ++...|++||+|+|.+|.+++++|||||+|++|.+|||.+++|++.+++++.
T Consensus 84 ~ak~t~~~~Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~ 163 (200)
T KOG2633|consen 84 AAKSTGGYGLPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRV 163 (200)
T ss_pred eeEecCCCCCceeEEEEecCchhhccchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHH
Confidence 688999999999999999999999876 3333699999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEEEeee
Q 034374 80 FANDFKEVSHDKFCLM 95 (96)
Q Consensus 80 ~~~~~~~v~~Vi~~~~ 95 (96)
|++.+++.. +.++.|
T Consensus 164 ~f~~~~d~~-l~~~~f 178 (200)
T KOG2633|consen 164 FFVKNKDSS-LKTVPF 178 (200)
T ss_pred HHhhCCCce-EEEEEE
Confidence 999876544 444443
No 11
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.92 E-value=1.4e-24 Score=141.71 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=70.5
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV 77 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i 77 (96)
++++|++|+|+||||||+++|.+.. ..+.+.|++||+++|+.|++++++|||||+||||.+|+|+++++++|.+++
T Consensus 57 ~~~~t~~~~l~~k~Iih~~~~~~~~-~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 57 EAVITGAGDLPARYVIHAATMEEPG-RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred eEEEEeCCCCCCCEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997655 456779999999999999999999999999999999999999999999886
No 12
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.90 E-value=5.4e-24 Score=134.78 Aligned_cols=73 Identities=41% Similarity=0.629 Sum_probs=68.5
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~ 73 (96)
++++|++++|+++||||+++|.|.... ++.+.|+++|+++|+.|++++++||+||+||||.+|+|+++++++|
T Consensus 44 ~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 44 EVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp SEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred CeeeecCCCccccceEEEecceeccccccccHHHHHHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 578999999999999999999997443 6789999999999999999999999999999999999999999986
No 13
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.88 E-value=3.7e-22 Score=137.60 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=72.7
Q ss_pred CceeccCCCCC----------CceEEEecCCCcC-CCCCcHHHHHHHHHHHHHhHHhC--CCcEEEecccccCCCCcChH
Q 034374 1 MLKECRGFKLP----------VSHVIHTVGPVFN-FHCNPEDILRSAYKNCLSVGKAN--NIQYIAFPAISCGVSQYPPD 67 (96)
Q Consensus 1 ea~~T~ag~L~----------~k~IiH~v~P~~~-~~~~~~~~L~~~~~~~L~~a~~~--~~~SIAfPaigtG~~g~p~~ 67 (96)
+|++|++|+|+ +|||||++++.+. ....+.+.+++||+++|+.++++ +++|||||+||||.+|+|++
T Consensus 93 ~a~it~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~ 172 (186)
T cd02900 93 SATVVPLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPE 172 (186)
T ss_pred cEEEecCCCCccccccccccCCCEEEEcCcccCCCCCCCcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHH
Confidence 68999999999 9999999886554 22245679999999999999987 89999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 034374 68 EAATIAISTVKEFA 81 (96)
Q Consensus 68 ~~a~~~~~~i~~~~ 81 (96)
++|++|++++++|.
T Consensus 173 ~aA~~m~~ai~~f~ 186 (186)
T cd02900 173 IAAKQMAFAIRLFN 186 (186)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999884
No 14
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.85 E-value=2.9e-23 Score=165.68 Aligned_cols=89 Identities=19% Similarity=0.267 Sum_probs=80.6
Q ss_pred cCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCc----------EEEecccccCCCCcChHHHHHHHHH
Q 034374 6 RGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQ----------YIAFPAISCGVSQYPPDEAATIAIS 75 (96)
Q Consensus 6 ~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~----------SIAfPaigtG~~g~p~~~~a~~~~~ 75 (96)
++|+|+|+||||+|||.|.++.. .+.|.+||.++|++|++++++ |||||+||||++|||.+++++++.+
T Consensus 592 ~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~ 670 (725)
T PRK13341 592 PAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSK 670 (725)
T ss_pred CCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHH
Confidence 99999999999999999987654 569999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEEeee
Q 034374 76 TVKEFANDFKEVSHDKFCLM 95 (96)
Q Consensus 76 ~i~~~~~~~~~v~~Vi~~~~ 95 (96)
++.+|+++.++..-++|++|
T Consensus 671 ~i~~~~~~~~~~~~~i~~~~ 690 (725)
T PRK13341 671 LIKRWLAQGPDYRQALATNL 690 (725)
T ss_pred HHHHHHhcCCcHHHHHhccC
Confidence 99999988776544555544
No 15
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.85 E-value=5.8e-21 Score=123.30 Aligned_cols=73 Identities=33% Similarity=0.493 Sum_probs=68.1
Q ss_pred CceeccCCCCCCceEEEecCCCcCCC-CCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFH-CNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~-~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~ 73 (96)
++++|+++++++++|||+++|.|..+ ..+.+.|+++|+++|+.|.+++++|||||+||||.+|+|++++++++
T Consensus 60 ~~~~~~~~~~~~~~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 60 TAVVTEGGNLPAKYVIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred cEEEecCCCCCCCEEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 46889999999999999999999987 36788999999999999999999999999999999999999999864
No 16
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.81 E-value=1.5e-19 Score=118.64 Aligned_cols=77 Identities=32% Similarity=0.592 Sum_probs=71.7
Q ss_pred CceeccCCCCC-CceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCc------ChHHHHH
Q 034374 1 MLKECRGFKLP-VSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY------PPDEAAT 71 (96)
Q Consensus 1 ea~~T~ag~L~-~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~------p~~~~a~ 71 (96)
++.+|++++++ ++||||+++|.|.... .+.+.|+++|+++|+.+.+++++|||||.||||.+|+ |.+.+++
T Consensus 61 ~~~~t~~~~~~~~~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~ 140 (147)
T cd02749 61 EAVLTKGYNLDGAKYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIK 140 (147)
T ss_pred CEEECcCCCCCcCCEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHH
Confidence 57899999999 9999999999998864 4678999999999999999999999999999999999 9999999
Q ss_pred HHHHHH
Q 034374 72 IAISTV 77 (96)
Q Consensus 72 ~~~~~i 77 (96)
++++++
T Consensus 141 i~~~~~ 146 (147)
T cd02749 141 IALEAA 146 (147)
T ss_pred HHHHHh
Confidence 998875
No 17
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.70 E-value=9.9e-17 Score=105.13 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=70.2
Q ss_pred ceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 2 LKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 2 a~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
++++.++++++++|+|+++|.|.+...+.+.|+++++++++.|++++++|||||.||+|.+|+|.+++++++.+.+.+
T Consensus 62 ~~~~~~~~~~~~~I~~~~t~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~~ 139 (140)
T cd02901 62 AVLERGSSLVSRYIYNLPTKVHYGPKSRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALAD 139 (140)
T ss_pred EEEecCCCCCceEEEEeeccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhcc
Confidence 356778888999999999998877556788999999999999999999999999999999999999999999877653
No 18
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.19 E-value=1.8e-10 Score=77.21 Aligned_cols=72 Identities=13% Similarity=-0.004 Sum_probs=62.1
Q ss_pred eccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCC-cEEEecccccCCCCcChHHHHHHHHHH
Q 034374 4 ECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNI-QYIAFPAISCGVSQYPPDEAATIAIST 76 (96)
Q Consensus 4 ~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~-~SIAfPaigtG~~g~p~~~~a~~~~~~ 76 (96)
.|.+++.+-+||+|..+- |+.+. .+.+.|++++++..+.+++++. .|||||.||+|.+|.|.+++.+++.+.
T Consensus 67 ~~~~~~~~~~~I~nl~tq-~~~~~~~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~ 140 (154)
T PHA02595 67 WEKYVGGHKAYCFNLYTQ-FDPGPNLEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA 140 (154)
T ss_pred EEeeccCCCEEEEEEecc-CCCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh
Confidence 456677778999999876 87665 3567899999999999999998 999999999999999999999998654
No 19
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=98.32 E-value=4.7e-06 Score=60.53 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=63.3
Q ss_pred EEEecCCCcCC----C-C---CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH---HHHhc
Q 034374 15 VIHTVGPVFNF----H-C---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK---EFAND 83 (96)
Q Consensus 15 IiH~v~P~~~~----~-~---~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~---~~~~~ 83 (96)
||-++.|++.. . . +..+.+++-++.+|..|..+|.+++-+-|.|+|.|+-|+.++|+...+.+. +|...
T Consensus 164 vIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA~GCG~f~N~p~~VA~~f~evL~~~~ef~g~ 243 (266)
T TIGR02452 164 FITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGAWGCGVFGNDPAEVAKIFHDLLSPGGIFKGR 243 (266)
T ss_pred EEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccCCCHHHHHHHHHHHhccCccccCc
Confidence 66666777641 1 1 235789999999999999999999999999999999999999999998887 56556
Q ss_pred CCceEEEEEe
Q 034374 84 FKEVSHDKFC 93 (96)
Q Consensus 84 ~~~v~~Vi~~ 93 (96)
++.|-|-+++
T Consensus 244 F~~VvFAI~d 253 (266)
T TIGR02452 244 IKEVVFAILD 253 (266)
T ss_pred eeEEEEEEeC
Confidence 6666665553
No 20
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=98.12 E-value=1.4e-05 Score=58.37 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=50.3
Q ss_pred CCCCceEEEecC---C---CcCCCC---CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 9 KLPVSHVIHTVG---P---VFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 9 ~L~~k~IiH~v~---P---~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
+-.++||+|+-+ | .|+... ..-+.+-+++.|.+..+. ..+.++.+|-||||..|.|++.+|+.|.-|++-
T Consensus 134 ~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV~p~~sAk~M~fAl~l 212 (280)
T PF14519_consen 134 NWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGVPPEISAKQMAFALRL 212 (280)
T ss_dssp -TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT---HHHHHHHHHHHHHH
T ss_pred ccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCCCHHHHHHHHHHHHHH
Confidence 346789999865 2 344432 234567788889888764 579999999999999999999999999999998
Q ss_pred HHh
Q 034374 80 FAN 82 (96)
Q Consensus 80 ~~~ 82 (96)
|..
T Consensus 213 ~~l 215 (280)
T PF14519_consen 213 YNL 215 (280)
T ss_dssp HHT
T ss_pred HHh
Confidence 864
No 21
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.0016 Score=46.45 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEEee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCL 94 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~~~ 94 (96)
.+.|..-.++.|.+|..++.+.+.+-|-|+|+|+-++..+|+++.+.+.+-.+.+...+-|+|.+
T Consensus 199 ~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g~fkhv~Fav 263 (285)
T COG4295 199 REALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLGDFKHVVFAV 263 (285)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhcccceEEEEE
Confidence 46788889999999999999999999999999999999999999999887766555555555543
No 22
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=95.94 E-value=0.072 Score=42.12 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=61.2
Q ss_pred ceeccCCCCC-CceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcCh-----HHHHHHH
Q 034374 2 LKECRGFKLP-VSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP-----DEAATIA 73 (96)
Q Consensus 2 a~~T~ag~L~-~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~-----~~~a~~~ 73 (96)
..||.-.||. +.-|+|.|.-.-.... ++..-+-..+||+|+.|.++++.+|.+|.+-+....-.. -.=|+..
T Consensus 377 ~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc~~Raelv 456 (510)
T PF10154_consen 377 FYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWCLKRAELV 456 (510)
T ss_pred eEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHHHHHHHHH
Confidence 4678888888 5678999965433222 566778889999999999999999999999988654322 2336777
Q ss_pred HHHHHHHHh
Q 034374 74 ISTVKEFAN 82 (96)
Q Consensus 74 ~~~i~~~~~ 82 (96)
++.++-|+-
T Consensus 457 ~k~vkg~~~ 465 (510)
T PF10154_consen 457 FKCVKGFMM 465 (510)
T ss_pred HHHHHHHHH
Confidence 888888875
No 23
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=95.79 E-value=0.098 Score=35.10 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=49.0
Q ss_pred ceEEEecCCCcCCCC----CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHH
Q 034374 13 SHVIHTVGPVFNFHC----NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAIST 76 (96)
Q Consensus 13 k~IiH~v~P~~~~~~----~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~ 76 (96)
.||.-.+++...+.. -+.+.|++|+...-..|.. +-.||.+|=||+|.+|.|=+..-+++-+.
T Consensus 82 ~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li~k~ 148 (152)
T cd03331 82 DWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLIRKY 148 (152)
T ss_pred eEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHHHHH
Confidence 577788887654432 3567889998888888866 55899999999999999998887776443
No 24
>PHA00684 hypothetical protein
Probab=83.25 E-value=6.7 Score=25.71 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHH
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV 77 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i 77 (96)
..+.++..+..-+..|.++--.+-=+..||+|+.||..++.|....++.
T Consensus 54 ~l~~I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~~a~ 102 (128)
T PHA00684 54 SLPDIGAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFRDAP 102 (128)
T ss_pred cHHHHHHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHhcCC
Confidence 4578999999999999999999999999999999999999998876554
No 25
>PLN02214 cinnamoyl-CoA reductase
Probab=83.23 E-value=2.9 Score=30.70 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=27.5
Q ss_pred CceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
+++|||+++|.... ..+.++ ....+.++.|.+.+++.+-+
T Consensus 82 ~d~Vih~A~~~~~~---~~~~~~~nv~gt~~ll~aa~~~~v~r~V~ 124 (342)
T PLN02214 82 CDGVFHTASPVTDD---PEQMVEPAVNGAKFVINAAAEAKVKRVVI 124 (342)
T ss_pred CCEEEEecCCCCCC---HHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 68999999986432 222232 34567888888889887665
No 26
>CHL00194 ycf39 Ycf39; Provisional
Probab=82.06 E-value=16 Score=26.30 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=29.0
Q ss_pred CceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
++.|||++++.|.......+.=.....+.++.|.+.|++.+-+
T Consensus 65 ~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 65 VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 6899999887664322212222345578889899999987765
No 27
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=81.62 E-value=15 Score=28.02 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCC-CCcChHHHHHHHHH
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGV-SQYPPDEAATIAIS 75 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~-~g~p~~~~a~~~~~ 75 (96)
...+.+.+++.++.+.+.|++-|.+ |+||+|. .+|+.+.+.+++=.
T Consensus 141 a~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al~~ 189 (344)
T PRK06052 141 AKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISALTV 189 (344)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHHHH
Confidence 3677788888888899999999999 9999996 67777777665433
No 28
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=81.03 E-value=6.5 Score=28.37 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=29.6
Q ss_pred CceEEEecCCCcCCCC-CcHHH---HHHHHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHC-NPEDI---LRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~-~~~~~---L~~~~~~~L~~a~~~~~~SIAf 54 (96)
|+.|||+++|.-..+. ..++. =-+..++.|+.|.+.+++.+-+
T Consensus 67 ~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVy 113 (280)
T PF01073_consen 67 VDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVY 113 (280)
T ss_pred CceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 7899999987533332 22222 2256779999999999997755
No 29
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=80.89 E-value=22 Score=26.85 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=29.1
Q ss_pred CCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
+++.|||++++.+....+..+.-.....+.++.|.+.|.+.+-+
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~ 179 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVL 179 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEE
Confidence 57999999987654322212222345568888899999887665
No 30
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=79.86 E-value=14 Score=27.09 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=29.0
Q ss_pred CceEEEecCCCcCCCC--CcHHHH---HHHHHHHHHhHHhCCCcEEEecc
Q 034374 12 VSHVIHTVGPVFNFHC--NPEDIL---RSAYKNCLSVGKANNIQYIAFPA 56 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~--~~~~~L---~~~~~~~L~~a~~~~~~SIAfPa 56 (96)
+++|||.++....... +..+.. -....+.|+.|.+.|++.+-++.
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 6899999986432211 112222 24456888889999998887754
No 31
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=79.62 E-value=14 Score=23.98 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=29.7
Q ss_pred CCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++||.+. + ...+++.++.+++.|.+.+-+
T Consensus 60 ~~d~vi~~~~~~~~------~--~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 60 GADAVIHAAGPPPK------D--VDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp TSSEEEECCHSTTT------H--HHHHHHHHHHHHHTTSSEEEE
T ss_pred hcchhhhhhhhhcc------c--cccccccccccccccccccee
Confidence 48999999998775 1 777888888888999988766
No 32
>PRK09358 adenosine deaminase; Provisional
Probab=78.36 E-value=24 Score=25.90 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEE--Ee-cccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEEee
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYI--AF-PAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCL 94 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SI--Af-PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~~~ 94 (96)
..+.++...+..++.+.+.|++.+ -+ |...++ .|++.++..+.+++++.+..++.. ++.++..+
T Consensus 75 t~ed~~~~~~~~~~e~~~~Gvty~E~~~~p~~~~~-~gl~~~~~~~a~~~~~~~a~~~~g-i~~~li~~ 141 (340)
T PRK09358 75 TEEDLRRLAFEYLEDAAADGVVYAEIRFDPQLHTE-RGLPLEEVVEAVLDGLRAAEAEFG-ISVRLILC 141 (340)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEeChhhhhh-cCCCHHHHHHHHHHHHHHHHHhcC-ceEEEEEE
Confidence 346788888888888999999865 22 443344 488999999999999988776654 55544433
No 33
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=77.89 E-value=5.5 Score=28.56 Aligned_cols=50 Identities=10% Similarity=0.055 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
..=.+.++++++.|.+.|++.+++=++|+.++.=|++++...| +-+.+++
T Consensus 33 ~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm-~L~~~~l 82 (230)
T PRK14837 33 KEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLM-FLIADYL 82 (230)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH-HHHHHHH
Confidence 3445667788889999999999999999999999999987654 4444444
No 34
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=77.83 E-value=4 Score=25.51 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=32.8
Q ss_pred ceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecc
Q 034374 13 SHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPA 56 (96)
Q Consensus 13 k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPa 56 (96)
-.|-|+..|.|-++.. .=+..+..+++.|.+.|++-|.++.
T Consensus 40 i~i~HT~V~d~lrGqG---ia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 40 IIIDHTYVPDELRGQG---IAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEEecCcCCHHHcCCc---HHHHHHHHHHHHHHHcCCeEcccch
Confidence 4688999999987754 3445677889999999999888754
No 35
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=77.07 E-value=7.5 Score=29.33 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=29.9
Q ss_pred CceEEEecCCCcCCCCC-cHHHHH---HHHHHHHHhHHhCC-CcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCN-PEDILR---SAYKNCLSVGKANN-IQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~-~~~~L~---~~~~~~L~~a~~~~-~~SIAf 54 (96)
|++|+|++.|.-....+ +.+.+. +...|+|+.|.+-+ ++.|-+
T Consensus 79 cdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~ 126 (327)
T KOG1502|consen 79 CDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY 126 (327)
T ss_pred CCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE
Confidence 99999999996554432 223444 44558888887776 777766
No 36
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=75.89 E-value=20 Score=26.72 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374 33 LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (96)
Q Consensus 33 L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~ 73 (96)
=.+.++++++.|.+.|++.|++=++|++++.=|++++...|
T Consensus 96 G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm 136 (296)
T PRK14827 96 GEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLM 136 (296)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHH
Confidence 34567788889999999999999999999999998876443
No 37
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=75.42 E-value=7.5 Score=27.60 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.=.+.++++++.|.+.|++.+.+=++|+.++.=|++++...| +-+.++++
T Consensus 28 ~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm-~l~~~~l~ 77 (221)
T cd00475 28 AGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLM-ELFRDVLR 77 (221)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHH-HHHHHHHH
Confidence 334566778888999999999999999999999998886554 55555544
No 38
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=74.42 E-value=7.8 Score=27.68 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.=.+.++++++.|.+.|++.+.+=++||.++.=|++++...| +-+.++++
T Consensus 27 ~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm-~L~~~~l~ 76 (226)
T TIGR00055 27 AGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLM-ELFEKKLD 76 (226)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHH-HHHHHHHH
Confidence 344567788888999999999999999999999999886554 45555544
No 39
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=73.61 E-value=26 Score=25.46 Aligned_cols=48 Identities=8% Similarity=0.175 Sum_probs=37.9
Q ss_pred HHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 34 ~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.+.+.++++.|.++|++.+.+=++|+.++.=|++++...| +-+.++++
T Consensus 57 ~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm-~L~~~~l~ 104 (256)
T PRK14828 57 AAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLL-DIIEDVVR 104 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHH-HHHHHHHH
Confidence 4566778888999999999999999999999998886655 33444443
No 40
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=73.02 E-value=8.5 Score=27.74 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.=.+.+++.++.|.+.|++.+++=++|+.++.=|++++... ++-+.++++
T Consensus 36 ~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~L-m~L~~~~l~ 85 (241)
T PRK14842 36 EGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSI-FGLLVEFIE 85 (241)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHH-HHHHHHHHH
Confidence 34466778888899999999999999999999999888654 455555544
No 41
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=72.55 E-value=9 Score=27.45 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.=.+.+++.++.|.+.|++.+++=++|+.++.=|++++...| +-+.++++
T Consensus 32 ~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm-~L~~~~l~ 81 (233)
T PRK14833 32 KGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLM-KLLKKYLK 81 (233)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHH-HHHHHHHH
Confidence 334566777888899999999999999999999999887554 44455443
No 42
>PLN02778 3,5-epimerase/4-reductase
Probab=71.71 E-value=9.5 Score=27.55 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=27.5
Q ss_pred CCceEEEecCCCcCCC---C--CcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFH---C--NPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~---~--~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.+++|||++++.-... . +..+.++ ....+.++.|.+.|++-+-+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4799999999753211 0 1122222 34458888898999876554
No 43
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=70.63 E-value=11 Score=27.33 Aligned_cols=41 Identities=22% Similarity=0.063 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHH
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 72 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~ 72 (96)
.=.+.+++.++.|.+.|++.+.+=++|++++.=|+++....
T Consensus 48 ~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~L 88 (249)
T PRK14831 48 RGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFL 88 (249)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHH
Confidence 34456678888899999999999999999999998887544
No 44
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=70.45 E-value=10 Score=27.13 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
+.=.+.+++.++.|.+.|++.+++=++|+.++.=|++++..+| +-+.+++
T Consensus 30 ~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm-~L~~~~l 79 (233)
T PRK14841 30 QRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLM-DLFVQMI 79 (233)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHH-HHHHHHH
Confidence 3344667788888999999999999999999999998886554 4444444
No 45
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=70.20 E-value=12 Score=26.92 Aligned_cols=49 Identities=10% Similarity=0.141 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
.=.+.+.+.++.|.+.|++.+++=++|++++.=|++++..+| +-+.+++
T Consensus 42 ~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm-~L~~~~l 90 (243)
T PRK14829 42 AGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLM-GFSRDVI 90 (243)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHH-HHHHHHH
Confidence 334566778888999999999999999999999998876443 4444444
No 46
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=69.84 E-value=11 Score=27.32 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=37.3
Q ss_pred HHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 34 ~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
.+.+++.++.|.+.|++.+++=++|+.++.=|++++...| +-+.+++
T Consensus 52 ~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm-~L~~~~l 98 (250)
T PRK14840 52 AKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELF-SLFNSQL 98 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH-HHHHHHH
Confidence 3566778888999999999999999999999999987555 3333333
No 47
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=69.36 E-value=22 Score=25.28 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=26.6
Q ss_pred CceEEEecCCCcCCCCCcH-HHHH---HHHHHHHHhHHhC-CCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNPE-DILR---SAYKNCLSVGKAN-NIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~-~~L~---~~~~~~L~~a~~~-~~~SIAf 54 (96)
+++|||.++|......+.. +.++ ....+.++.|.+. +++.+-+
T Consensus 77 ~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~ 124 (322)
T PLN02662 77 CEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVV 124 (322)
T ss_pred CCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 6899999998643222221 2332 3445777777776 8877765
No 48
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=68.87 E-value=12 Score=27.24 Aligned_cols=49 Identities=18% Similarity=0.061 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
.=.+.++++++.|.+.|++.+.+=++|+.++.=|++++...| +-+.+++
T Consensus 46 ~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm-~L~~~~l 94 (253)
T PRK14832 46 QGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLM-LLFERLL 94 (253)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH-HHHHHHH
Confidence 334667788888999999999999999999999999887655 4444444
No 49
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=68.49 E-value=12 Score=26.92 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
..=.+.+++.++.|.+.|++.+++=++|+.++.=|++++..+| +-+.++++
T Consensus 37 ~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm-~l~~~~l~ 87 (242)
T PRK14838 37 QAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALM-SLLLDSIE 87 (242)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHH-HHHHHHHH
Confidence 3344566788888999999999999999999999988886544 55555543
No 50
>PTZ00325 malate dehydrogenase; Provisional
Probab=68.19 E-value=20 Score=26.75 Aligned_cols=43 Identities=9% Similarity=0.068 Sum_probs=34.3
Q ss_pred CceEEEecCCCcCCCCCcHHHHHH---HHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILRS---AYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~~---~~~~~L~~a~~~~~~SIAf 54 (96)
|+.|+|++|+.-..+.+-.+.|.. .+++..+...+++.+.+-+
T Consensus 77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~ivi 122 (321)
T PTZ00325 77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVG 122 (321)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 799999999875544344567777 8899999999999998776
No 51
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=68.13 E-value=45 Score=24.42 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEe--cccccCCCCcChHHHHHHHHHHHHHHHhc-CCceEEEEEeee
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAF--PAISCGVSQYPPDEAATIAISTVKEFAND-FKEVSHDKFCLM 95 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~g~p~~~~a~~~~~~i~~~~~~-~~~v~~Vi~~~~ 95 (96)
+.|...|+.-++...+.|++.|-+ |+++...... ..+.+.-.++.+.+.+.. ....++.++.||
T Consensus 151 ~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~ 217 (332)
T cd03311 151 MDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLE-PDDLAADYLKWANEALADRPDDTQIHTHICY 217 (332)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcc-cHHHHHHHHHHHHHHHHhCCCCCEEEEEEEC
Confidence 566777777777788889988888 8887766443 223334444444444444 456778888885
No 52
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=68.07 E-value=13 Score=26.84 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
.=.+.+.+.++.|.+.|++.+.+=++|+.++.=|++++..+| +-+.+++
T Consensus 37 ~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm-~L~~~~l 85 (239)
T PRK14839 37 AGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLM-RLLRAYL 85 (239)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHH-HHHHHHH
Confidence 334566778888999999999999999999999998886554 4444444
No 53
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=67.71 E-value=13 Score=26.12 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 35 SAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 35 ~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
+.++++++.|.+.|++.+++=++|+.+++=|++++...| +-+.+++
T Consensus 25 ~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm-~l~~~~l 70 (223)
T PF01255_consen 25 EKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALM-DLFERYL 70 (223)
T ss_dssp HHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHH-HHHHHHH
Confidence 445677788889999999999999999999999986654 4444433
No 54
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=66.91 E-value=15 Score=26.27 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=37.6
Q ss_pred HHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 34 ~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.+.++++++.|.+.|++.+.+=++|+.++.=|+++.... ++-+.++++
T Consensus 23 ~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~L-m~l~~~~l~ 70 (229)
T PRK10240 23 AKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL-MELFVWALD 70 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHH-HHHHHHHHH
Confidence 455667788889999999999999999999888887654 355555443
No 55
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=66.01 E-value=17 Score=26.27 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
.=.+.+.++++.|.+.|++.+++=++|+.++.=|++++..+| +-+.+++
T Consensus 42 ~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm-~L~~~~l 90 (249)
T PRK14834 42 AGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLF-GLLRLFI 90 (249)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHH-HHHHHHH
Confidence 334566777888999999999999999999999998886543 4444444
No 56
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=65.79 E-value=14 Score=27.23 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~ 73 (96)
.=-..+...|+.|.+.|++.|++=|.|+.+++=|++++--.|
T Consensus 64 aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM 105 (271)
T KOG1602|consen 64 AGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLM 105 (271)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHH
Confidence 344566778999999999999999999999999998875554
No 57
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=65.65 E-value=44 Score=24.20 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~ 73 (96)
.+.-.+.+.+.++.|.+.|++.+++=++|+.++.=|+++....|
T Consensus 48 h~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm 91 (251)
T PRK14830 48 HKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLM 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHH
Confidence 45667788899999999999999999999999999998887665
No 58
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=65.55 E-value=63 Score=25.19 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEe-cccccCCCCcChHHHHHHHHHHHHHHHhcCCceEE
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAF-PAISCGVSQYPPDEAATIAISTVKEFANDFKEVSH 89 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAf-PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~ 89 (96)
+.=.+.+++.|+.|++.|++.+.| | |+.....+.+++-+.+.+.+.+-+..-..+.+
T Consensus 214 ekSv~~~~~eL~rA~~LGa~~VV~HP--Gs~~~~~~~ee~i~~i~e~L~~~la~~~gV~I 271 (413)
T PTZ00372 214 EKSYDAFLDDLQRCEQLGIKLYNFHP--GSTVGQCSKEEGIKNIADCINKAHEETKSVII 271 (413)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCCHHHHHHHHHHHHHHHHhCcCCCEE
Confidence 344567889999999999999999 5 33223445577777777777665443333443
No 59
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=65.05 E-value=17 Score=26.70 Aligned_cols=48 Identities=15% Similarity=-0.007 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 33 LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 33 L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
=.+...+.++.|.+.|++.+++=++|+.++.=|++++...| +-+.+++
T Consensus 70 G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm-~L~~~~l 117 (275)
T PRK14835 70 GVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLM-NLFEREA 117 (275)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHH-HHHHHHH
Confidence 34566778888999999999999999999999988887654 4444444
No 60
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=64.48 E-value=16 Score=27.62 Aligned_cols=43 Identities=12% Similarity=0.018 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~ 73 (96)
..=.+.+++.++.|.+.|++.+.+=|+|+.++.=|++++.-.|
T Consensus 46 ~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm 88 (322)
T PTZ00349 46 FMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLF 88 (322)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHH
Confidence 3344677788999999999999999999999999999987655
No 61
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=64.15 E-value=61 Score=24.54 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCCC----------CcChHHHHHHHHHHHHHHHhcCC-ceEEEEEeee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGVS----------QYPPDEAATIAISTVKEFANDFK-EVSHDKFCLM 95 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~----------g~p~~~~a~~~~~~i~~~~~~~~-~v~~Vi~~~~ 95 (96)
...|.++|++-++...+.|++.|=| |+++++.. |..++...+..++++..-++..+ ++++-++.||
T Consensus 165 ~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d~~v~~HiC~ 243 (368)
T PRK06520 165 FDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPADLTIGLHVCR 243 (368)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEeec
Confidence 3567788888888889999999988 99888543 23566667777788888888776 5666666664
No 62
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=63.85 E-value=47 Score=23.09 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
+...+.++++++.|.+.|.+.|.++. |......+.+++-+.+.+.+++..+
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~i~~~~-g~~~~~~~~~~~~~~~~~~l~~l~~ 130 (254)
T TIGR03234 80 EEFREGVALAIAYARALGCPQVNCLA-GKRPAGVSPEEARATLVENLRYAAD 130 (254)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECc-CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999998753 2223445566666666666666544
No 63
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=61.70 E-value=32 Score=24.63 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=26.6
Q ss_pred CceEEEecCCCcCCCCCc-HHHHH---HHHHHHHHhHHhC-CCcEEEec
Q 034374 12 VSHVIHTVGPVFNFHCNP-EDILR---SAYKNCLSVGKAN-NIQYIAFP 55 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~-~~~L~---~~~~~~L~~a~~~-~~~SIAfP 55 (96)
+++|||+++|......+. .+.+. ....+.|+.|.+. +++.|-+.
T Consensus 78 ~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~ 126 (322)
T PLN02986 78 CDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILT 126 (322)
T ss_pred CCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence 689999999854322121 22233 3345777777775 67777663
No 64
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=61.42 E-value=21 Score=25.11 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=27.4
Q ss_pred CCceEEEecCCCc----CCCCCcHHHH---HHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVF----NFHCNPEDIL---RSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~----~~~~~~~~~L---~~~~~~~L~~a~~~~~~SIAf 54 (96)
..+.|||++++.- ... +..+.. .....+.++.|.+.+++.+-+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~-~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMT-YPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhh-CcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 3589999998631 111 112222 234668888899999887776
No 65
>KOG3716 consensus Carnitine O-acyltransferase CPTI [Lipid transport and metabolism]
Probab=61.29 E-value=21 Score=29.74 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=45.9
Q ss_pred cCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCC---CCcChHHHHHHHHHHH
Q 034374 23 FNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGV---SQYPPDEAATIAISTV 77 (96)
Q Consensus 23 ~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~---~g~p~~~~a~~~~~~i 77 (96)
|....+..+.+++||..+=.++++..+.+++|-..|-|. .|.+||--.|.+++-.
T Consensus 511 wd~p~~~~~~I~~~~~~~~~l~~Dv~~~~~~f~dfGKg~iKKc~vSPDafiQmAlQLA 568 (764)
T KOG3716|consen 511 WDIPKECLDEIERAYEAAKKLADDVDLHSLVFTDFGKGFIKKCGVSPDAFIQMALQLA 568 (764)
T ss_pred ecCChhHHHHHHHHHHHHHHHhhhchheeeeehhhcchhHHhcCCCchHHHHHHHHHH
Confidence 443334567888999998889999999999999999995 7899999999988754
No 66
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=57.38 E-value=91 Score=24.32 Aligned_cols=63 Identities=16% Similarity=0.340 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe----cccccCCCC-cChHHHHHHHHHHHHHHHhcCCceEE-EEEee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF----PAISCGVSQ-YPPDEAATIAISTVKEFANDFKEVSH-DKFCL 94 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf----PaigtG~~g-~p~~~~a~~~~~~i~~~~~~~~~v~~-Vi~~~ 94 (96)
.+.++..+.+.++...+.|+.-.=+ |.+-+ .-| ++.++..++..++..++.++++ |.. +|+|+
T Consensus 116 ~~~~~~~~y~~~eef~~dgVvY~E~Rt~~p~l~~-~~G~~t~e~~v~~~~~~~e~~~~~fp-I~sklI~~~ 184 (399)
T KOG1097|consen 116 APAFRDYAYEALEEFAEDGVVYLEVRTYPPQLYT-ADGDITPEDVVAIVIAALEKAKRDFP-IKSKLIMCC 184 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCceEEEEEccCchhhh-cCCCCCHHHHHHHHHHHHHHHHHhCC-CcceEEEee
Confidence 4678888999999999999876643 66666 333 9999999999999999999998 643 66665
No 67
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=57.26 E-value=23 Score=25.71 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
.+.-.+.+++.++.|.+.|++.+.+=++|+.++.=|++++...| +-+.+++
T Consensus 40 H~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm-~l~~~~l 90 (253)
T PRK14836 40 HRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALM-ELFLKAL 90 (253)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHH-HHHHHHH
Confidence 45677788899999999999999999999999998888876554 4444443
No 68
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=57.20 E-value=87 Score=24.33 Aligned_cols=84 Identities=8% Similarity=0.014 Sum_probs=48.9
Q ss_pred CCCCCceEEEecCC--CcCCCC------------CcHHHHHHHHHHHHHhHHhCCC--cEEEecccccCCCCcChHHHHH
Q 034374 8 FKLPVSHVIHTVGP--VFNFHC------------NPEDILRSAYKNCLSVGKANNI--QYIAFPAISCGVSQYPPDEAAT 71 (96)
Q Consensus 8 g~L~~k~IiH~v~P--~~~~~~------------~~~~~L~~~~~~~L~~a~~~~~--~SIAfPaigtG~~g~p~~~~a~ 71 (96)
+.+++++.+=+.|- .+.+-. ++...|++-+.++++.++...- .-..|-..|.|..|....-.-+
T Consensus 96 ~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~ 175 (405)
T COG1252 96 GEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELA 175 (405)
T ss_pred ccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHH
Confidence 67999999988883 222211 1345677777788899884443 4455666899998865533333
Q ss_pred HHHHHHHH-HHhcCCceEEEE
Q 034374 72 IAISTVKE-FANDFKEVSHDK 91 (96)
Q Consensus 72 ~~~~~i~~-~~~~~~~v~~Vi 91 (96)
-.+..+.+ |.....++++++
T Consensus 176 ~~~~~l~~~~~~~~~~~~V~L 196 (405)
T COG1252 176 ERLHRLLKKFRVDPSELRVIL 196 (405)
T ss_pred HHHHHHhhhhcCCccccEEEE
Confidence 33333322 222233556554
No 69
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=57.14 E-value=32 Score=24.05 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=31.2
Q ss_pred ceEEEecCCCcCCCCC------cHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 13 SHVIHTVGPVFNFHCN------PEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 13 k~IiH~v~P~~~~~~~------~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
+.|||+++..+..... ..+.-....++.++.|.+.+.+.+-+
T Consensus 66 d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~ 113 (314)
T COG0451 66 DAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVF 113 (314)
T ss_pred CEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 7899999987655431 12344455668888899999999999
No 70
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=55.35 E-value=79 Score=23.03 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEe---cccccCCCCcChHHHHHHHHHHHHHHHhcCC
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAF---PAISCGVSQYPPDEAATIAISTVKEFANDFK 85 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAf---PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~ 85 (96)
..+.+++...+.++.+.+.|+.-+=+ |...+...|++.++..+.+.+++.+..+..+
T Consensus 40 ~~~~l~~~~~~~~~~~~~d~V~Y~E~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T cd00443 40 KGEALARALKEVIEEFAEDNVQYLELRTTPRLLETEKGLTKEQYWLLVIEGISEAKQWFP 99 (305)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEcchhhcCcccCCCHHHHHHHHHHHHHHHHHHcC
Confidence 35678888899999888888776544 4433332289999999999999999877765
No 71
>PF10719 ComFB: Late competence development protein ComFB; InterPro: IPR019657 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The development of genetic competence in Bacillus subtilis is a highly regulated adaptive response to stationary-phase stress. For competence to develop, the transcriptional regulator, ComK, must be activated. ComK is required for the expression of genes encoding proteins that function in DNA uptake. In log-phase cultures, ComK is inactive in a complex with MecA and ClpC. The comS gene is induced in response to high culture cell density and nutritional stress and its product functions to release active ComK from the complex. ComK then stimulates the transcription initiation of its own gene as well as that of the late competence operons []. The comF locus has three open reading frames and is driven by a single sigma A-like promoter in front of comFORF1. It is dependent on early regulatory competence genes and is only expressed in competence medium. ComFORF1 is similar to an extensive family of ATP-dependent RNA/DNA helicases with closer similarity to the DEAD protein subfamily and to the PriA protein in Escherichia coli. ComFORF1 late gene product plays an essential role during the binding and uptake events involved in B. subtilis transformation []. ComFB is the second protein encoded within the late competence locus ComF []. The function of ComFB within late competence development is not known.
Probab=54.36 E-value=14 Score=21.98 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.9
Q ss_pred CCCCCceEEEecCCCcCC
Q 034374 8 FKLPVSHVIHTVGPVFNF 25 (96)
Q Consensus 8 g~L~~k~IiH~v~P~~~~ 25 (96)
-+||.+||-|-.|-.+..
T Consensus 39 N~LPPrYv~~~~~~~~~~ 56 (85)
T PF10719_consen 39 NRLPPRYVVSEVGEAYAL 56 (85)
T ss_pred cCCCCeEEEecCcHHHHh
Confidence 479999999999877655
No 72
>PRK04326 methionine synthase; Provisional
Probab=51.94 E-value=92 Score=22.78 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEe--cccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEEeee
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAF--PAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLM 95 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~~~~ 95 (96)
..|...|+.-++...+.|++.|-+ |.++.. +++. +.+.+.+.+-.+.. ...+++++||
T Consensus 157 ~~l~~~~~~~i~~l~~~G~~~iqidEP~l~~~-----~~~~-~~~~~~l~~~~~~~-~~~v~lH~C~ 216 (330)
T PRK04326 157 FDLAKVINEEIKNLVEAGAKYIQIDEPALATH-----PEDV-EIAVEALNRIVKGI-NAKLGLHVCY 216 (330)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCchhhcC-----HHHH-HHHHHHHHHHHhCC-CCEEEEEEeC
Confidence 456677777777788889987777 887762 2333 66666666666655 4567888886
No 73
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=51.59 E-value=99 Score=23.12 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEe--cccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEEeee
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAF--PAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLM 95 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~~~~ 95 (96)
..|.++|+.-++...+.|++.|=| |.++++ .++..+..++++...++..+ .++.++.||
T Consensus 152 ~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~-----~~~~~~~~v~~~n~~~~g~~-~~v~~HvC~ 212 (339)
T PRK09121 152 WEFAKILNQEAKELEAAGVDIIQFDEPAFNVF-----FDEVNDWGVAALERAIEGLK-CETAVHICY 212 (339)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecccHHhhh-----hHHHHHHHHHHHHHHHcCCC-CceEEEEeC
Confidence 558888888888888999999999 888863 24456777777777777665 445556665
No 74
>KOG4506 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.37 E-value=21 Score=28.01 Aligned_cols=60 Identities=13% Similarity=0.027 Sum_probs=37.0
Q ss_pred ceeccCCCCCC-ceEEEecCCC-cCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCC
Q 034374 2 LKECRGFKLPV-SHVIHTVGPV-FNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGV 61 (96)
Q Consensus 2 a~~T~ag~L~~-k~IiH~v~P~-~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~ 61 (96)
+.++....|.- ..++|.+.-. ...+. +...---..+||+++.|..+++.+|.+|.+-...
T Consensus 422 al~qd~sc~seihiafHL~VDd~lkS~eInaR~P~iaGlRNIiktaar~d~sTIhIPLLLid~ 484 (598)
T KOG4506|consen 422 ALIQDHSCLSEIHIAFHLCVDDHLKSGEINARDPAIAGLRNIIKTAARHDISTIHIPLLLIDD 484 (598)
T ss_pred hhhcCccccchhheeeEeeehhhhhcCCccCcCcHHHHHHHHHHHHHhcCCceeeeeeEEecC
Confidence 34444444432 3466766432 22222 3333334567899999999999999999987643
No 75
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=51.05 E-value=10 Score=24.02 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEeccccc
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISC 59 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigt 59 (96)
-.+..||+.....|.++|+ .+|+..|
T Consensus 49 Ps~~~cyrr~~~~a~~~Gw---~iPS~~t 74 (108)
T PF09039_consen 49 PSFSACYRRLKRAAKENGW---PIPSEKT 74 (108)
T ss_dssp --HHHHHHHHHHHHHHHT--------HHH
T ss_pred CCHHHHHHHHHHHHHHcCC---CCCCHHH
Confidence 4689999999999999998 5776655
No 76
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=51.04 E-value=87 Score=27.03 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=38.4
Q ss_pred HHHHHHHHHhHHhCCCcEEEe-ccc-----ccCCCCc--ChHHHHHHHHHHHHHHHhcCC
Q 034374 34 RSAYKNCLSVGKANNIQYIAF-PAI-----SCGVSQY--PPDEAATIAISTVKEFANDFK 85 (96)
Q Consensus 34 ~~~~~~~L~~a~~~~~~SIAf-Pai-----gtG~~g~--p~~~~a~~~~~~i~~~~~~~~ 85 (96)
-+.++..++.++++|++-|.. ... .||.||. ++.-.|..+++++.++-++.+
T Consensus 807 ~~~l~~~i~~~~~~~~~~ig~~~p~~p~y~~t~~fg~~g~~rs~a~~~~~~~~~~~~~y~ 866 (912)
T TIGR02171 807 MNSLKAFIDETAKKGVKVIGTIFPQSPGYKNTGSFGRYGPRRSIAKKIIDSFKKMEKTYP 866 (912)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCCCCCccccCcccccCcchhhHHHHHHHHHHHHhhCC
Confidence 345667888999999999986 223 3677664 666777888899988877655
No 77
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=48.46 E-value=1e+02 Score=22.27 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEec
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfP 55 (96)
+.+-+.+.+.++...+.|.+.|.++
T Consensus 160 ~~~v~~i~~~v~~L~~~GAr~~~v~ 184 (315)
T cd01837 160 PFLVSNISSAIKRLYDLGARKFVVP 184 (315)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEec
Confidence 4566777788888889999999994
No 78
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=48.17 E-value=75 Score=22.96 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHH
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAAT 71 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~ 71 (96)
...-.+..++.++.|.+.|++.+.+=++||.+..=|+++...
T Consensus 42 h~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~ 83 (245)
T COG0020 42 HKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSF 83 (245)
T ss_pred HHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHH
Confidence 345566777888888888999999999999999888887765
No 79
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=48.01 E-value=1.2e+02 Score=22.84 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCCCCcChHHHHHHHHHHHHHHHhcCC-ceEEEEEeee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGVSQYPPDEAATIAISTVKEFANDFK-EVSHDKFCLM 95 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~-~v~~Vi~~~~ 95 (96)
..++..+|++.++...+.|++-|-+ |+++.|.-.-.-++..+.+.+++.......+ ++++-.+.|+
T Consensus 153 ~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~i~~HiCy 221 (330)
T COG0620 153 AKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLRRDDDYLEWAVEAINLAAAGVGADTQIHLHICY 221 (330)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCccccchHHHHHHHHHHHHHHhcCCCCcEEEEEEEC
Confidence 5788899999999999999999988 9999884333214556666666666666543 5666555443
No 80
>PRK10810 anti-sigma28 factor FlgM; Provisional
Probab=47.35 E-value=27 Score=21.87 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=24.8
Q ss_pred ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 56 AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 56 aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+|.-|.|..+.+..|+.+++..+++++.
T Consensus 70 AI~~G~y~vD~~kIAd~Ll~~a~ell~~ 97 (98)
T PRK10810 70 AIRNGELKMDTGKIADALIKEAQSDLQS 97 (98)
T ss_pred HHHcCCcccCHHHHHHHHHHHHHHHHhc
Confidence 5678899999999999999999998864
No 81
>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....
Probab=47.25 E-value=65 Score=19.68 Aligned_cols=47 Identities=21% Similarity=0.129 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 78 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~ 78 (96)
..+.++++.-++.+.+.+.+.+++++..- .-+...+..++.+.+.+.
T Consensus 67 ~~~~~r~a~~~~~~~l~~~~~~~v~i~l~---~~~~~~~~~~~~~~~g~~ 113 (126)
T PF02789_consen 67 TAESLRKAGAAAARALKKLKVKSVAIDLP---IDGENSDEAAEAAAEGAL 113 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-SEEEEEGC---SSBTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCceEEEEeCc---ccccCcHHHHHHHHHHHH
Confidence 46799999999999999999999999655 333333466666666654
No 82
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=46.75 E-value=7.5 Score=23.48 Aligned_cols=47 Identities=15% Similarity=0.369 Sum_probs=32.0
Q ss_pred HHHHHHhHHhCCCcEEEecccccCCCCcCh------HHHHHHHHHHHHHHHhcCC
Q 034374 37 YKNCLSVGKANNIQYIAFPAISCGVSQYPP------DEAATIAISTVKEFANDFK 85 (96)
Q Consensus 37 ~~~~L~~a~~~~~~SIAfPaigtG~~g~p~------~~~a~~~~~~i~~~~~~~~ 85 (96)
|.++|-.....|++||-+| |+|...|+. +..-|.-=.+++.-+++++
T Consensus 20 fEDvLgvGh~~G~sSiiVP--GsGe~NfDs~e~NP~et~kqRrE~EV~~LLeKip 72 (80)
T PF08149_consen 20 FEDVLGVGHSKGFSSIIVP--GSGEPNFDSLEANPFETKKQRREREVRSLLEKIP 72 (80)
T ss_pred hHHeeEeeccCceeEEecc--CCCCCCCCcccCCcccchhHHhHHHHHHHHHhCC
Confidence 5667888899999999999 677766654 3333444455666666553
No 83
>smart00701 PGRP Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.
Probab=45.89 E-value=83 Score=20.51 Aligned_cols=73 Identities=23% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCCCCceEE--EecCCCcCCCCCcHHHHHHHHHHHHH------------------------------hHHhCCCcEEEec
Q 034374 8 FKLPVSHVI--HTVGPVFNFHCNPEDILRSAYKNCLS------------------------------VGKANNIQYIAFP 55 (96)
Q Consensus 8 g~L~~k~Ii--H~v~P~~~~~~~~~~~L~~~~~~~L~------------------------------~a~~~~~~SIAfP 55 (96)
...+.++|+ |+++|......++...+++..+.=++ .+...+-.||.+.
T Consensus 20 ~~~~v~~viiHHT~~~~~~~~~~~~~~~r~iq~~H~~~~gw~DIgYhflI~~dG~IyeGR~~~~~gah~~g~N~~sigI~ 99 (142)
T smart00701 20 LTRPVRYVIIHHTATPNCYTDAQCAQILRNIQAYHMEELGWCDIGYNFLVGGDGKVYEGRGWNVVGAHTGGYNDISLGIA 99 (142)
T ss_pred cCCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHcCCCCCcCCeEEEcCCCEEEECCCCCcccccccCCCCCeEEEE
Confidence 445567766 88888865433345566664432221 1222456788888
Q ss_pred ccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 56 AISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 56 aigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
.+|.-...-|. .++...+..+..+.
T Consensus 100 ~iG~~~~~~pt-~~q~~al~~Li~~~ 124 (142)
T smart00701 100 FIGNFTDKLPT-DAALDAAQDLLACA 124 (142)
T ss_pred EEeCCCCCCCc-HHHHHHHHHHHHHH
Confidence 88765444444 44444455555554
No 84
>PRK01060 endonuclease IV; Provisional
Probab=45.62 E-value=1e+02 Score=21.61 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCC--CCcChHHHHHHHHHHHHHHHhcCCceEEEE
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGV--SQYPPDEAATIAISTVKEFANDFKEVSHDK 91 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~--~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi 91 (96)
.+.-.+.++++++.|.+.|.+.|.+- +|. .+.+.+++-+.+.+.+.+.+.....|++.+
T Consensus 84 r~~s~~~~~~~i~~A~~lga~~vv~h---~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~i 144 (281)
T PRK01060 84 LEKSRDFLIQEIERCAALGAKLLVFH---PGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVL 144 (281)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEc---CCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 34445678899999999999998882 332 223344466777777766554333455443
No 85
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=45.18 E-value=52 Score=22.24 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHhCCCcEEEecccccCC
Q 034374 35 SAYKNCLSVGKANNIQYIAFPAISCGV 61 (96)
Q Consensus 35 ~~~~~~L~~a~~~~~~SIAfPaigtG~ 61 (96)
+.++.+++...++|+++||+..+-+-.
T Consensus 134 ~~v~~~~~~l~~~gv~avAV~~~fS~~ 160 (176)
T PF05378_consen 134 DEVREALRELKDKGVEAVAVSLLFSYR 160 (176)
T ss_pred HHHHHHHHHHHhCCCCEEEEECccCCC
Confidence 456667777788999999997665533
No 86
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=44.24 E-value=36 Score=25.01 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEec
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAfP 55 (96)
..++=.+.+++|+++|.++|+++|-+.
T Consensus 90 ~r~~aleiM~KaI~LA~dLGIRtIQLA 116 (287)
T COG3623 90 TRQQALEIMEKAIQLAQDLGIRTIQLA 116 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeEeec
Confidence 456667888999999999999999873
No 87
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=44.18 E-value=1.4e+02 Score=22.56 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEEeee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLM 95 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~~~~ 95 (96)
.+.|..+|+..++.-.+.|++-|=| |++.++.- ++-.+...++...-.+..++.++.+.-+|
T Consensus 177 ~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~----~~~~~~~~~~~~~l~~~~~~~~l~l~tyf 240 (360)
T cd03312 177 LDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLP----EEWLAAFKRAYEELAKAAPGLKLLLATYF 240 (360)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCC----HHHHHHHHHHHHHHhcCCCCCcEEEEecc
Confidence 4678889999999999999999999 99998763 23445555555555555545566555444
No 88
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=44.04 E-value=70 Score=21.83 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEE
Q 034374 28 NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKF 92 (96)
Q Consensus 28 ~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~ 92 (96)
.....|+.++++.+..+.+.|++.+ |..|..|++ .- +.+++.+--++.+++++++.
T Consensus 22 ~~~~~ik~~L~~~i~~lie~G~~~f----i~GgalG~D--~w---aae~vl~LK~~yp~ikL~~v 77 (177)
T PF06908_consen 22 PKIQVIKKALKKQIIELIEEGVRWF----ITGGALGVD--LW---AAEVVLELKKEYPEIKLALV 77 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--EE----EE---TTHH--HH---HHHHHHTTTTT-TT-EEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCEE----EECCcccHH--HH---HHHHHHHHHhhhhheEEEEE
Confidence 3467899999999999999998864 557777754 22 22333333345677777543
No 89
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=43.67 E-value=90 Score=21.54 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=23.5
Q ss_pred CCceEEEecCCCcCCCC-C--cHHHH----HHHHHHHHHhHHhCCCc
Q 034374 11 PVSHVIHTVGPVFNFHC-N--PEDIL----RSAYKNCLSVGKANNIQ 50 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~-~--~~~~L----~~~~~~~L~~a~~~~~~ 50 (96)
.+++|||+++..-..+. . ..+.+ -...+++++.+.+.+.+
T Consensus 57 ~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 57 GADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred CCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 37999999986432111 1 11122 22356788888888874
No 90
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=43.53 E-value=1.3e+02 Score=22.19 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCC-cChHHHHHHHHHHHHHHHhc
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ-YPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g-~p~~~~a~~~~~~i~~~~~~ 83 (96)
.+.=.+++.+.++.|+..|.+.+.|=. |.++ -+++++-+-+.+++.+-++.
T Consensus 82 ~ekS~~~l~~e~~r~~~lG~~~lv~Hp---G~~~~~~~e~~l~~i~~~Ln~~~~~ 133 (280)
T COG0648 82 VEKSIERLIDEIDRCEQLGAKLLVFHP---GSYLGQGKEEGLNRIAEALNELLEE 133 (280)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEECC---ccccCCCHHHHHHHHHHHHHHHhhc
Confidence 345556777888999999999999933 3222 23788888888887776654
No 91
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=43.52 E-value=1.1e+02 Score=21.33 Aligned_cols=61 Identities=10% Similarity=0.109 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcC--CceEEEE
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDF--KEVSHDK 91 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~--~~v~~Vi 91 (96)
.+...+-++++++.|.+.|.+.|.+|. |....++..++.-+.+.+.+.+..+.. ..|++.+
T Consensus 80 ~~~~~~~~~~~i~~a~~lga~~i~~~~-g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 80 EEEFRDGVAAAIRYARALGNKKINCLV-GKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLI 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 345667889999999999999998753 222234555665566666665554322 2355444
No 92
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=42.49 E-value=1.3e+02 Score=21.89 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEeccccc---CCCCcChHHHHHHHHHHHHHHHhc
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISC---GVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigt---G~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
.+.+.+-...+-.++.-+|+.|||+..-.. +....+.+.++++..+-++..+.+
T Consensus 99 ~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~~~~~~~~~~~e~A~~~~~~lv~~l~~~ 155 (252)
T COG0496 99 DDVIYSGTVAAAMEAALLGIPAIAISLAYREAFGKQDVDFETAAKVARALVEALLAN 155 (252)
T ss_pred cceeeeehHHHHHHHHHcCccceeeeehhccccccccccHHHHHHHHHHHHHHHHhC
Confidence 445555666777788889999999987765 333347899999998888888775
No 93
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=42.15 E-value=76 Score=22.28 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=25.1
Q ss_pred CCceEEEecCCCcCCCCCcHHHH---HHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDIL---RSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L---~~~~~~~L~~a~~~~~~SIAf 54 (96)
+++.|+|.+++.-....+....+ -....+.++.|.+.+.+ +.+
T Consensus 66 ~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~ 111 (314)
T TIGR02197 66 KIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGIP-FIY 111 (314)
T ss_pred CCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCCc-EEE
Confidence 57999999986422111212121 24456778888888764 444
No 94
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=41.08 E-value=73 Score=18.49 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=27.1
Q ss_pred eEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEec
Q 034374 14 HVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 14 ~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfP 55 (96)
.+.|+..|.--++.. .=...++.+++.|.++|.+-++.+
T Consensus 24 ~i~hT~V~~~~rGqG---ia~~L~~~~l~~a~~~~~kv~p~C 62 (78)
T PF14542_consen 24 VITHTEVPPELRGQG---IAKKLVEAALDYARENGLKVVPTC 62 (78)
T ss_dssp EEEEEEE-CSSSTTT---HHHHHHHHHHHHHHHTT-EEEETS
T ss_pred EEEEEEECccccCCc---HHHHHHHHHHHHHHHCCCEEEEEC
Confidence 478988876544432 556677888999999999988664
No 95
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=40.70 E-value=2.2e+02 Score=23.90 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCCC--CcChHHHHHHHHHHHHHHHhcCC-ceEEEEEeee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGVS--QYPPDEAATIAISTVKEFANDFK-EVSHDKFCLM 95 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~--g~p~~~~a~~~~~~i~~~~~~~~-~v~~Vi~~~~ 95 (96)
.++|..+|+.-++...+.|++-|=| |++..|.- +-..++..+.+.+++....+..+ +.++.++.||
T Consensus 570 ~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~ 640 (750)
T TIGR01371 570 AYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCY 640 (750)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEEC
Confidence 4688889999999999999998888 99987632 01224455666677766666655 5777788776
No 96
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=38.47 E-value=2.2e+02 Score=24.06 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEEeee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLM 95 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~~~~ 95 (96)
.+.|-..|...|+...+.|++-|=+ |+|.++. +. .-.+.+.++.....+..+.+++++.-+|
T Consensus 181 l~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~---~~-~~~~~~~~ay~~l~~~~~~~~i~l~TyF 244 (766)
T PLN02475 181 LDKILPVYKEVIAELKAAGASWIQFDEPALVMDL---ES-HKLQAFKTAYAELESTLSGLNVLVETYF 244 (766)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCC---CH-HHHHHHHHHHHHHHhccCCCeEEEEccC
Confidence 4677889999999999999999988 9999975 22 3334444444444444456677776665
No 97
>PLN02240 UDP-glucose 4-epimerase
Probab=37.89 E-value=1.1e+02 Score=21.95 Aligned_cols=45 Identities=20% Similarity=0.117 Sum_probs=26.6
Q ss_pred CCceEEEecCCCcCCCC--CcHHHHH---HHHHHHHHhHHhCCCcEEEec
Q 034374 11 PVSHVIHTVGPVFNFHC--NPEDILR---SAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L~---~~~~~~L~~a~~~~~~SIAfP 55 (96)
.+++|||+++....... +..+.++ ....+.++.+.+.+.+++-+.
T Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 130 (352)
T PLN02240 81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFS 130 (352)
T ss_pred CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 57899999985322111 1122222 334467777888888877663
No 98
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=37.61 E-value=12 Score=16.77 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHH
Q 034374 30 EDILRSAYKNCL 41 (96)
Q Consensus 30 ~~~L~~~~~~~L 41 (96)
+++|++|+.+++
T Consensus 3 deiL~~CI~sAm 14 (20)
T PF05924_consen 3 DEILQECIGSAM 14 (20)
T ss_dssp HHHHHHHHHCTS
T ss_pred HHHHHHHHHHhc
Confidence 368888877654
No 99
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=37.19 E-value=1.2e+02 Score=21.38 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=22.9
Q ss_pred CCceEEEecCC-CcCCCCCcHHHHHH---HHHHHHHhHHhCCCc
Q 034374 11 PVSHVIHTVGP-VFNFHCNPEDILRS---AYKNCLSVGKANNIQ 50 (96)
Q Consensus 11 ~~k~IiH~v~P-~~~~~~~~~~~L~~---~~~~~L~~a~~~~~~ 50 (96)
.+++|||+++- .... ......++. ...+.|+.|.+.+.+
T Consensus 68 ~~d~Vih~A~~~~~~~-~~~~~~~~~n~~~t~~ll~~~~~~~~~ 110 (308)
T PRK11150 68 DIEAIFHEGACSSTTE-WDGKYMMDNNYQYSKELLHYCLEREIP 110 (308)
T ss_pred CccEEEECceecCCcC-CChHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 47999999862 2111 112222332 345788888888876
No 100
>PRK12677 xylose isomerase; Provisional
Probab=36.25 E-value=2e+02 Score=22.03 Aligned_cols=46 Identities=7% Similarity=-0.094 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHHhCCCcEEEecccccCCCCc------ChHHHHHHHHHHHHHHHh
Q 034374 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQY------PPDEAATIAISTVKEFAN 82 (96)
Q Consensus 34 ~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~------p~~~~a~~~~~~i~~~~~ 82 (96)
.+-++++++.|.+.|.+.|.+- .|.-|. +.+++-+.+.+++.+-.+
T Consensus 113 i~~~~r~IdlA~eLGa~~Vvv~---~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~ 164 (384)
T PRK12677 113 LRKVLRNIDLAAELGAKTYVMW---GGREGAEYDAAKDVRAALDRYREAIDLLAA 164 (384)
T ss_pred HHHHHHHHHHHHHhCCCEEEEe---eCCCCccCcccCCHHHHHHHHHHHHHHHHH
Confidence 4447899999999999998773 333222 445666666666554433
No 101
>PTZ00124 adenosine deaminase; Provisional
Probab=35.38 E-value=2e+02 Score=21.85 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe---cccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF---PAISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf---PaigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
.+.+++...+.++.+.+.|+.-+=+ |.......|++.++..+.+++++++..+.
T Consensus 101 ~~dl~r~a~e~~~d~~~dgV~Y~Eir~~P~~~~~~~gl~~~~vv~av~~g~~~a~~~ 157 (362)
T PTZ00124 101 YEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKHNLDIDLIHQAIVKGIKEAVEL 157 (362)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEcCchhhhcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4567777777777777777765544 54444557899999999999999888663
No 102
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=35.32 E-value=65 Score=21.01 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=29.2
Q ss_pred CCCceEEEecC--CCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 10 LPVSHVIHTVG--PVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 10 L~~k~IiH~v~--P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
|.++++..-.| +.+.... ...+.+.+.++...+.|++.|++ |++
T Consensus 83 lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~l 130 (213)
T PF01261_consen 83 LGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVR-IAL 130 (213)
T ss_dssp HTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSE-EEE
T ss_pred hCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcce-EEE
Confidence 45666555544 2333322 34678888999999999999966 666
No 103
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=35.29 E-value=90 Score=18.10 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
..+..++..|..... .+++|.++.|+. .+++|.+++-....+.|.+
T Consensus 42 l~~~i~~~~l~~l~~-~y~~i~~~~ia~-~l~~~~~~vE~~l~~~I~~ 87 (105)
T PF01399_consen 42 LKEKIRRRNLRQLSK-PYSSISISEIAK-ALQLSEEEVESILIDLISN 87 (105)
T ss_dssp HHHHHHHHHHHHHHH-C-SEEEHHHHHH-HHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-HhcccchHHHHH-HhccchHHHHHHHHHHHHC
Confidence 344444455544433 999999999987 4578888888888777765
No 104
>PLN02869 fatty aldehyde decarbonylase
Probab=35.15 E-value=56 Score=26.89 Aligned_cols=39 Identities=5% Similarity=0.202 Sum_probs=30.9
Q ss_pred CCCcCCCC---CcHHHHHHHHHHHHHhHHhCCCcEEEecccc
Q 034374 20 GPVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAIS 58 (96)
Q Consensus 20 ~P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~SIAfPaig 58 (96)
.|.|.-++ .+.+.+.+-+++++..|+++|.|-+++-++-
T Consensus 365 vpr~~~qy~~~~~~~~in~~Ie~ail~ad~~Gvkv~sLg~LN 406 (620)
T PLN02869 365 IPKYKIQYLLKWQNESINSLIEEAILEADKRGVKVLSLGLLN 406 (620)
T ss_pred eccccccccCchhhhhHHHHHHHHHHHHHhcCCEEEechhcc
Confidence 47765554 3567888999999999999999999887764
No 105
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=35.14 E-value=73 Score=24.02 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=45.7
Q ss_pred CCcCCCCCcHHHHHHHHHHHHHhHHhCCCc--------EEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 21 PVFNFHCNPEDILRSAYKNCLSVGKANNIQ--------YIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 21 P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~--------SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
|.|...+ ..|+++-+.+-+.|.+.|++ ++++|-.+|=..|.|.-+-.++-+++..+-+
T Consensus 243 ~~wHPaS---~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~l 308 (342)
T KOG1576|consen 243 PPWHPAS---DELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRL 308 (342)
T ss_pred CCCCCCC---HHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccc
Confidence 5777643 47888889999999988876 6779999999999998888888877655443
No 106
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=35.08 E-value=1.7e+02 Score=20.87 Aligned_cols=61 Identities=16% Similarity=0.022 Sum_probs=37.9
Q ss_pred HHHHHHHHhHHhCCCcEEEe--cccccCCCCcChHHHHHHHHHHHHHHHhcC--CceEEEEEeee
Q 034374 35 SAYKNCLSVGKANNIQYIAF--PAISCGVSQYPPDEAATIAISTVKEFANDF--KEVSHDKFCLM 95 (96)
Q Consensus 35 ~~~~~~L~~a~~~~~~SIAf--PaigtG~~g~p~~~~a~~~~~~i~~~~~~~--~~v~~Vi~~~~ 95 (96)
+.+.+-++...+.|..-|.+ |..+.+..-++++...+.....+++..+.. .....++|.|+
T Consensus 144 ~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg 208 (306)
T cd00465 144 EFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCY 208 (306)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECC
Confidence 33444444445668876666 555554333688888888887777777643 34566777764
No 107
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=34.72 E-value=31 Score=18.92 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=12.9
Q ss_pred ccccCCCCcChHHHHHHHHHH
Q 034374 56 AISCGVSQYPPDEAATIAIST 76 (96)
Q Consensus 56 aigtG~~g~p~~~~a~~~~~~ 76 (96)
+|..|.|..+.+..|+-|++.
T Consensus 36 ~I~~G~Y~vd~~~iA~~ml~~ 56 (57)
T PF04316_consen 36 AIASGTYKVDAEKIAEKMLDF 56 (57)
T ss_dssp HHHTT-----HHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHhc
Confidence 456889999999999998875
No 108
>PLN00106 malate dehydrogenase
Probab=34.61 E-value=1.7e+02 Score=21.90 Aligned_cols=43 Identities=12% Similarity=0.012 Sum_probs=29.6
Q ss_pred CceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
++.|||++|..-..+.+-.+.|. ..+++..+.+.+.+.+.|-+
T Consensus 87 aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivi 132 (323)
T PLN00106 87 ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVN 132 (323)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 89999999976543332233443 45667777788888887766
No 109
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=34.49 E-value=1e+02 Score=23.36 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=35.1
Q ss_pred HHHHHHhHHhCCCcEEEe-ccc------ccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 37 YKNCLSVGKANNIQYIAF-PAI------SCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 37 ~~~~L~~a~~~~~~SIAf-Pai------gtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
..+-++.+.++|+++|++ |.+ .+|...+.++-..+-+++++++-..
T Consensus 63 l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p 115 (330)
T COG0113 63 LVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFP 115 (330)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHHHHHHHHhCC
Confidence 334466778899999986 544 3688889999999988888887654
No 110
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=34.05 E-value=1.6e+02 Score=20.49 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.+.-.+-+++.++.|...|.++|-+++...| ...+.++.-+.+.+.+++..+
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~ 136 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAHAG-YLTPPNVIWGRLAENLSELCE 136 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCCCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 3445567889999999999999988653332 223455555555555555444
No 111
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=33.89 E-value=1e+02 Score=19.28 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=20.9
Q ss_pred HhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEEe
Q 034374 42 SVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFC 93 (96)
Q Consensus 42 ~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~~ 93 (96)
+.|++.|+.-+-+|.-+.+ ++.+.+ +.+.+.+++.+. .+.+||
T Consensus 51 ~~a~~~Gl~y~~iPv~~~~---~~~~~v-----~~f~~~l~~~~~-Pvl~hC 93 (110)
T PF04273_consen 51 AAAEALGLQYVHIPVDGGA---ITEEDV-----EAFADALESLPK-PVLAHC 93 (110)
T ss_dssp HHHHHCT-EEEE----TTT-----HHHH-----HHHHHHHHTTTT-SEEEE-
T ss_pred HHHHHcCCeEEEeecCCCC---CCHHHH-----HHHHHHHHhCCC-CEEEEC
Confidence 5679999999999987643 333333 333444555544 456665
No 112
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=33.35 E-value=52 Score=20.03 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=19.8
Q ss_pred cCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 59 CGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 59 tG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
.|.-|.|++++++-+.+.+.+++++
T Consensus 78 lG~~g~~aE~Vg~~Aa~~L~~~i~~ 102 (103)
T PF05189_consen 78 LGERGVPAEKVGEEAAEELLEYIRS 102 (103)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHCT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3678899999999999999998764
No 113
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=33.28 E-value=89 Score=23.78 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=24.2
Q ss_pred ccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEEeee
Q 034374 56 AISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLM 95 (96)
Q Consensus 56 aigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~~~~ 95 (96)
-+|||.---+. +.+.+++...+.+.+.|+++.|+.|
T Consensus 96 elgSG~~~~i~----~~~k~~~d~i~~~~~di~FlRFv~f 131 (334)
T PF05941_consen 96 ELGSGNEVQID----EEMKEACDAILADYPDIEFLRFVYF 131 (334)
T ss_pred EecCCcccCCC----HHHHHHHHHHHhhCCCceEEEEEEE
Confidence 35667443332 3456667778888889888888876
No 114
>PRK06914 short chain dehydrogenase; Provisional
Probab=33.15 E-value=1.7e+02 Score=20.27 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=9.9
Q ss_pred CCceEEEecCCCc
Q 034374 11 PVSHVIHTVGPVF 23 (96)
Q Consensus 11 ~~k~IiH~v~P~~ 23 (96)
+.++|+|++|...
T Consensus 81 ~id~vv~~ag~~~ 93 (280)
T PRK06914 81 RIDLLVNNAGYAN 93 (280)
T ss_pred CeeEEEECCcccc
Confidence 3589999998644
No 115
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=33.03 E-value=61 Score=17.76 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=17.9
Q ss_pred HHHHHHhHHhCCCcEEEecccc
Q 034374 37 YKNCLSVGKANNIQYIAFPAIS 58 (96)
Q Consensus 37 ~~~~L~~a~~~~~~SIAfPaig 58 (96)
.++.++.|.++|++.+++.-=.
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC
Confidence 4566888999999999997555
No 116
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.88 E-value=2e+02 Score=22.35 Aligned_cols=57 Identities=12% Similarity=-0.048 Sum_probs=32.1
Q ss_pred eccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcC
Q 034374 4 ECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65 (96)
Q Consensus 4 ~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p 65 (96)
++.|.+..|.| |..|...+...+ ..+.+.++.+=+ ..+.|++.|.|-..-++.+|.|
T Consensus 161 I~rGC~~~Csf---C~~p~~~G~~rs-r~~e~Il~ei~~-l~~~G~keI~l~g~~~~~yG~d 217 (459)
T PRK14338 161 IIYGCNMSCSY---CVIPLRRGRERS-RPLAEIVEEVRR-IAARGAKEITLLGQIVDSYGHD 217 (459)
T ss_pred cccCCCCCCCc---CCeeccCCCCcc-CCHHHHHHHHHH-HHHCCCeEEEEeeecCCCcccc
Confidence 56788888884 444433332111 122333332222 3346999999987777777765
No 117
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=32.82 E-value=21 Score=22.27 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=25.5
Q ss_pred eeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 3 KECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 3 ~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
+.|.+.+|.|+| +..+...........-.+.+.+.++...+.+...|.|
T Consensus 10 ~~t~~Cnl~C~y---C~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l 58 (139)
T PF13353_consen 10 LFTNGCNLRCKY---CFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVL 58 (139)
T ss_dssp EEEC--SB--TT----TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEE
T ss_pred EEcCcccccCcC---cCCcccCcccccccccchhhhhhhhHHhcCCceEEEE
Confidence 457889999995 4434322211111112566677777777899999987
No 118
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=32.80 E-value=2e+02 Score=21.03 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=46.4
Q ss_pred CceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
-+.|||-+|=.+-+. .=+-.|+.-|+...+.|+.-||-|-. .+|+-...|+.+.+.....++
T Consensus 16 P~gvihFiGGaf~ga-----~P~itYr~lLe~La~~Gy~ViAtPy~----~tfDH~~~A~~~~~~f~~~~~ 77 (250)
T PF07082_consen 16 PKGVIHFIGGAFVGA-----APQITYRYLLERLADRGYAVIATPYV----VTFDHQAIAREVWERFERCLR 77 (250)
T ss_pred CCEEEEEcCcceecc-----CcHHHHHHHHHHHHhCCcEEEEEecC----CCCcHHHHHHHHHHHHHHHHH
Confidence 578999988665442 33457888888888899999999974 458888888877777666544
No 119
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=32.77 E-value=1.9e+02 Score=20.87 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe---cccccCCCCcChHHHHHHHHHHHHHHHhcC
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF---PAISCGVSQYPPDEAATIAISTVKEFANDF 84 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf---PaigtG~~g~p~~~~a~~~~~~i~~~~~~~ 84 (96)
.+.++...+..++.+.+.|++.+=+ |-..+ ..|++.++..+.+++++.+..+++
T Consensus 68 ~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~-~~~~~~~~~~~~~~~ai~~~~~~~ 124 (325)
T cd01320 68 EEDFERLAYEYLEDAAADGVVYAEIRFSPQLHT-RRGLSFDEVVEAVLRGLDEAEAEF 124 (325)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhc-cCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4677888888888889999986533 54444 346899999999999998887665
No 120
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.63 E-value=1.7e+02 Score=20.38 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.+...+-++.+++.|.++|.+.|-+|... .....+.++.-+.+.+.+++..+
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~ 140 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGYD-VYYEEKSEETRQRFIEGLAWAVE 140 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCcc-cccccccHHHHHHHHHHHHHHHH
Confidence 44556678999999999999999986321 11122334455555555555444
No 121
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=32.10 E-value=80 Score=16.28 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=24.7
Q ss_pred hCCCcEEEeccc-ccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 46 ANNIQYIAFPAI-SCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 46 ~~~~~SIAfPai-gtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
+.+.=.+-||-+ |+-..|-..+++.+-+.+++..|+.
T Consensus 10 ~~~~y~~~~pdlpg~~t~G~t~eea~~~~~eal~~~le 47 (48)
T PF03681_consen 10 EDGGYVAYFPDLPGCFTQGDTLEEALENAKEALELWLE 47 (48)
T ss_dssp TSSSEEEEETTCCTCEEEESSHHHHHHHHHHHHHHHCT
T ss_pred CCCeEEEEeCCccChhhcCCCHHHHHHHHHHHHHHHhh
Confidence 334445667777 6667777777777777777766653
No 122
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=31.46 E-value=1.5e+02 Score=21.94 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=26.0
Q ss_pred CCceEEEecCCCcC---CCCCcHHHH---HHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFN---FHCNPEDIL---RSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~---~~~~~~~~L---~~~~~~~L~~a~~~~~~SIAf 54 (96)
.+++|||+++..-. ...+....+ .....+.++.|.+.+.+.+-+
T Consensus 85 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~ 134 (370)
T PLN02695 85 GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFY 134 (370)
T ss_pred CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 36899999975310 001111111 224467888888889887765
No 123
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=31.36 E-value=2.1e+02 Score=20.80 Aligned_cols=56 Identities=16% Similarity=0.311 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEe---cccccCCCCcChHHHHHHHHHHHHHHHhcCC
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAF---PAISCGVSQYPPDEAATIAISTVKEFANDFK 85 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAf---PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~ 85 (96)
..+.++...+..+..+.+.|++-+=+ |...++ .|++.++..+..++++.+..++.+
T Consensus 66 t~e~l~~~~~~~~~e~~~~Gv~y~E~r~~p~~~~~-~g~~~~~~~~~~~~~i~~a~~~~g 124 (324)
T TIGR01430 66 TEDDFKRLAYEYVEKAAKDGVVYAEVFFDPQLHTN-RGISPDTVVEAVLDGLDEAERDFG 124 (324)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEeCcccccc-CCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35678888888888889999865543 655554 478999999999999988876654
No 124
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=30.24 E-value=1.6e+02 Score=21.60 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEEee
Q 034374 39 NCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCL 94 (96)
Q Consensus 39 ~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~~~ 94 (96)
.-+++|.++|++.||.+.. +++++ +.+++..+.+ .++.++|.+
T Consensus 153 ~Gv~~Aie~Gyk~IaVTv~-------~~~~a-----~~iRe~e~~~-~~~~~if~V 195 (259)
T TIGR03275 153 KGVEKAIELGYKKIAVTVA-------DAEDA-----KAIRELESES-GIDIIIFAV 195 (259)
T ss_pred HHHHHHHHcCCceEEEEec-------CHHHH-----HHHHHhcccc-CCcEEEEEE
Confidence 3467899999999999865 22332 3445554433 566666654
No 125
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.94 E-value=2.1e+02 Score=20.40 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCC-CcChHHHHHHHHHHHHHHHhcCCceEE
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVS-QYPPDEAATIAISTVKEFANDFKEVSH 89 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~-g~p~~~~a~~~~~~i~~~~~~~~~v~~ 89 (96)
.=.+.++++++.|.+.|.+.|.+. +|.. ..+.+++-+.+.+++.+.++....+.+
T Consensus 85 ~sv~~~~~~i~~A~~lga~~vv~H---~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l 140 (274)
T TIGR00587 85 KSLDVLDEELKRCELLGIMLYNFH---PGSALKCSEEEGLDNLIESLNVVIKETKIVTI 140 (274)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEC---CCCCCCCCHHHHHHHHHHHHHHHHhccCCCEE
Confidence 334668899999999999998884 2322 224566667777777776653333443
No 126
>PLN00198 anthocyanidin reductase; Provisional
Probab=29.72 E-value=2.1e+02 Score=20.50 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=24.5
Q ss_pred CceEEEecCCCcCCCCCcHHHH----HHHHHHHHHhHHhC-CCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNPEDIL----RSAYKNCLSVGKAN-NIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L----~~~~~~~L~~a~~~-~~~SIAf 54 (96)
+++|||.++|......+....+ -....+.++.+.+. +.+.+-+
T Consensus 81 ~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~ 128 (338)
T PLN00198 81 CDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVIL 128 (338)
T ss_pred CCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEE
Confidence 6899999997532211211112 23345667766665 5777665
No 127
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=29.55 E-value=2.2e+02 Score=20.50 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEe--cccccCCCC
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAF--PAISCGVSQ 63 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~g 63 (96)
+.|.+.|..-++...+.|...|-+ |.+++...+
T Consensus 147 ~~l~~~~~~~~~~l~~~G~~~iqidEP~l~~~~~s 181 (321)
T cd03310 147 KSLAEFLREQVKELKNRGIVVVQIDEPSLGAVGAG 181 (321)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEeCCCcccccccc
Confidence 566777777777778889988888 888887653
No 128
>PRK05086 malate dehydrogenase; Provisional
Probab=29.08 E-value=2.4e+02 Score=20.78 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=42.5
Q ss_pred CceEEEecCCCcCCCCCcHHHHHH---HHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILRS---AYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~~---~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
++.||-++|..-..+.+..+.|.. .+++..+...+++.+.+-+ +..-|.|.-+.++.+++.++
T Consensus 70 ~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivi------vvsNP~D~~t~~~~~~~~~~ 135 (312)
T PRK05086 70 ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIG------IITNPVNTTVAIAAEVLKKA 135 (312)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------EccCchHHHHHHHHHHHHHh
Confidence 789999999765444344567777 8889998888888887776 23345555555554444433
No 129
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=29.06 E-value=1.6e+02 Score=23.33 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=25.7
Q ss_pred hHHhCCCcEEEecccccCCCCcCh-HHHHHHHHHHH-HHHHhcC--CceEE-EEEeeeC
Q 034374 43 VGKANNIQYIAFPAISCGVSQYPP-DEAATIAISTV-KEFANDF--KEVSH-DKFCLMI 96 (96)
Q Consensus 43 ~a~~~~~~SIAfPaigtG~~g~p~-~~~a~~~~~~i-~~~~~~~--~~v~~-Vi~~~~~ 96 (96)
++.++|+|||++ |=|..|-+. |.+|-.+++.+ .+|++++ +++.+ ++|-.||
T Consensus 198 la~eqGVksiSv---~Y~Q~gn~~QDiaAi~aLr~L~~eyL~~~g~~dv~i~tV~hqwM 253 (441)
T PF06368_consen 198 LAAEQGVKSISV---GYAQQGNLIQDIAAIRALRELAAEYLPKYGYKDVEITTVFHQWM 253 (441)
T ss_dssp HHHHTT--EEEE---EEE--S-HHHHHHHHHHHHHHHHHHHHHTT--S-EEEEEEE---
T ss_pred HHHHcCCeEEEe---cccccCChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEeeec
Confidence 478999999987 455555444 55555556665 6788854 44443 4454444
No 130
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=28.74 E-value=1.6e+02 Score=18.86 Aligned_cols=50 Identities=12% Similarity=0.041 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
..-.+.++.+++.|+++|.+.|.==-+.-|.+-.=..++.+.+++.+.+-
T Consensus 5 Sla~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~FaFev~~eg 54 (115)
T COG0375 5 SLAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRFAFEVVAEG 54 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEEEEcceeccCHHHHHHHHHHHhcc
Confidence 35677888999999999998887777788877766677778888887663
No 131
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=28.34 E-value=46 Score=24.89 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=23.8
Q ss_pred EEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 52 IAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 52 IAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
.-+|.||-|.+.-+++++.+.+..|+..
T Consensus 13 ~~mP~iGlGTw~~~~~~~~~aV~~Al~~ 40 (300)
T KOG1577|consen 13 FKMPIIGLGTWQSPPGQVAEAVKAAIKA 40 (300)
T ss_pred CccceeeeEecccChhhHHHHHHHHHHh
Confidence 3479999999999999998888888765
No 132
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.04 E-value=2.9e+02 Score=22.19 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=31.4
Q ss_pred hHHhCCCcEEEecccccCCCCcCh-HHHHHHHHHHH-HHHHhcC--CceEE-EEEeeeC
Q 034374 43 VGKANNIQYIAFPAISCGVSQYPP-DEAATIAISTV-KEFANDF--KEVSH-DKFCLMI 96 (96)
Q Consensus 43 ~a~~~~~~SIAfPaigtG~~g~p~-~~~a~~~~~~i-~~~~~~~--~~v~~-Vi~~~~~ 96 (96)
+|.++|+|||++ |=|..|-.. |.+|-.+++++ .+|+++. +++.+ .+|-.||
T Consensus 237 la~eqGVksisv---gy~Q~Gn~~QDiaai~aL~~l~~eYl~~~g~~Dv~i~tV~hqwM 292 (480)
T TIGR01503 237 LAAEQGVKNITV---GYGQVGNLTQDIAALRALEEQTNEYLKAYGYNDVFVTTVFHQWM 292 (480)
T ss_pred HHHHcCCeEEEe---ccccCCChHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeeecc
Confidence 578999999986 455555444 55555566665 6788864 44443 3443433
No 133
>PRK07201 short chain dehydrogenase; Provisional
Probab=27.95 E-value=1.4e+02 Score=23.67 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=25.7
Q ss_pred CCceEEEecCCCcCCCCCcHHH---HHHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDI---LRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~---L~~~~~~~L~~a~~~~~~SIAf 54 (96)
.+++|||+++..-... ...+. --...++.++.|.+.+.+.+-+
T Consensus 77 ~~D~Vih~Aa~~~~~~-~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~ 122 (657)
T PRK07201 77 DIDHVVHLAAIYDLTA-DEEAQRAANVDGTRNVVELAERLQAATFHH 122 (657)
T ss_pred CCCEEEECceeecCCC-CHHHHHHHHhHHHHHHHHHHHhcCCCeEEE
Confidence 4799999998632111 11112 2233567788888887776654
No 134
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=27.92 E-value=82 Score=21.79 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=19.2
Q ss_pred HHHHHHHhHHhCCCcEEEecccccCCCC
Q 034374 36 AYKNCLSVGKANNIQYIAFPAISCGVSQ 63 (96)
Q Consensus 36 ~~~~~L~~a~~~~~~SIAfPaigtG~~g 63 (96)
-+-++++.|.++|+++|++ ||.-|
T Consensus 124 nVl~Ai~~Ak~~gm~vI~l----tG~~G 147 (176)
T COG0279 124 NVLKAIEAAKEKGMTVIAL----TGKDG 147 (176)
T ss_pred HHHHHHHHHHHcCCEEEEE----ecCCC
Confidence 3557889999999999999 55544
No 135
>PLN02427 UDP-apiose/xylose synthase
Probab=27.89 E-value=1.5e+02 Score=21.84 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=22.6
Q ss_pred CceEEEecCCCcCCCC--CcHHHHHHHH---HHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHC--NPEDILRSAY---KNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~--~~~~~L~~~~---~~~L~~a~~~~~~SIAf 54 (96)
+++|||+++....... +..+.+...+ .++|+.|.+.+ +.+-+
T Consensus 87 ~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~ 133 (386)
T PLN02427 87 ADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIH 133 (386)
T ss_pred CCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEE
Confidence 7899999985322111 2222333322 35667777766 54443
No 136
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.79 E-value=2.2e+02 Score=19.98 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.+...+.++.+++.|.+.|.+.|-++.- ....+.+.++.-+.+.+.+++..+
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~ 145 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQLAGY-DVYYEQANNETRRRFIDGLKESVE 145 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCc-cccccccHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999987521 101223345554555555554443
No 137
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=27.76 E-value=50 Score=19.22 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=24.5
Q ss_pred cEEEecccccC-CCCcChHHHHHHHHHHHHHHHh
Q 034374 50 QYIAFPAISCG-VSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 50 ~SIAfPaigtG-~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
-+|.||.+|.= ..|...+++.+.+.+.+.+|++
T Consensus 39 G~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~~~~ 72 (82)
T PF02563_consen 39 GTISLPLIGPVKVAGLTLEEAEEEIKQRLQKYYR 72 (82)
T ss_dssp SEEEETTTEEEE-TT--HHHHHHHHHHHHTTTSS
T ss_pred CcEeecccceEEECCCCHHHHHHHHHHHHHHHhc
Confidence 47899999954 6889999999999888888653
No 138
>PF06528 Phage_P2_GpE: Phage P2 GpE; InterPro: IPR009493 This entry is represented by Burkholderia phage phiE202, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.
Probab=27.44 E-value=44 Score=17.37 Aligned_cols=22 Identities=18% Similarity=0.585 Sum_probs=19.6
Q ss_pred CCCcChHHHHHHHHHHHHHHHh
Q 034374 61 VSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 61 ~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.||+|+++.-.--+.++.+|.+
T Consensus 7 ~FhW~Pse~~~m~l~El~~Wre 28 (39)
T PF06528_consen 7 VFHWPPSEMDAMSLDELMDWRE 28 (39)
T ss_pred ecCCCHHHHhcCCHHHHHHHHH
Confidence 7899999999998999988876
No 139
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=27.16 E-value=1.4e+02 Score=20.62 Aligned_cols=52 Identities=19% Similarity=0.125 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCC-CCcChHHHHHHHHHHHHHHHh
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGV-SQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~-~g~p~~~~a~~~~~~i~~~~~ 82 (96)
+.+.+-...+-..|..+|+.+|||..-.... .....+.+++.+.+-+.+.++
T Consensus 108 ~v~~SGTVgAA~ea~~~GipaIA~S~~~~~~~~~~~~~~aa~~~~~~i~~~~~ 160 (196)
T PF01975_consen 108 DVLYSGTVGAAMEAALRGIPAIAVSLDSDSESKDPDFETAARFAVKLIEKLLK 160 (196)
T ss_dssp GGGG-HHHHHHHHHHHTTSEEEEEEEESSST-SSCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHcCCCeEEEeccccCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 3677777777788889999999996555432 112467888888777777765
No 140
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.95 E-value=2.3e+02 Score=19.94 Aligned_cols=27 Identities=7% Similarity=0.123 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecc
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPA 56 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPa 56 (96)
.+...+-++++++.|.+.|.+.|.++.
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~ 115 (279)
T TIGR00542 89 RQQGLEIMEKAIQLARDLGIRTIQLAG 115 (279)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 445567789999999999999998863
No 141
>PRK07475 hypothetical protein; Provisional
Probab=26.92 E-value=1.7e+02 Score=20.69 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecc
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPA 56 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPa 56 (96)
..+...+..+.+..++.|++.|++|+
T Consensus 61 ~~~~~~l~~aa~~L~~~G~d~I~~~C 86 (245)
T PRK07475 61 PSLLDAFVAAARELEAEGVRAITTSC 86 (245)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEech
Confidence 34667777788888889999999998
No 142
>PF15162 DUF4580: Domain of unknown function (DUF4580)
Probab=26.71 E-value=1.5e+02 Score=20.27 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=36.2
Q ss_pred HHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEE
Q 034374 44 GKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKF 92 (96)
Q Consensus 44 a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~ 92 (96)
-+...-.||-||.=|..-.-.+..++-. +++.+.+|.+-+++-.+|++
T Consensus 34 S~sve~~svIFpLSGvAFLL~d~~~~~~-~l~ki~kF~~ihrNsflvL~ 81 (162)
T PF15162_consen 34 SDSVEPGSVIFPLSGVAFLLMDAQECFM-FLAKIEKFIDIHRNSFLVLS 81 (162)
T ss_pred cccccCCeEEEEcccceeeEeccHHHhh-HHHHHHHHHhccCCceEEee
Confidence 3445567899998887777777777776 88899999987777666554
No 143
>PRK14567 triosephosphate isomerase; Provisional
Probab=26.54 E-value=2.2e+02 Score=20.66 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=36.9
Q ss_pred EEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEe---c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAF---P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAf---P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+|-|+|-.-...+ +..+.+.+-+..+|.......++.+.+ | +||||.. +..+-++-+...+++++.+
T Consensus 121 pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~~~~~ivIAYEPvWAIGTG~~--as~e~i~~~~~~IR~~l~~ 194 (253)
T PRK14567 121 PVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVV--ASLEQIQETHQFIRSLLAK 194 (253)
T ss_pred EEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHHHhCCEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHh
Confidence 4556664332211 233445555555554333333455655 6 5667664 5566667777889988754
No 144
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=26.17 E-value=99 Score=23.55 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHhCCCcEEEe-cccccCCCC
Q 034374 35 SAYKNCLSVGKANNIQYIAF-PAISCGVSQ 63 (96)
Q Consensus 35 ~~~~~~L~~a~~~~~~SIAf-PaigtG~~g 63 (96)
.-+++.|++|+++|++.+-+ |.++-+-..
T Consensus 252 ~F~e~~L~~ake~~I~~vl~~P~V~~~~~~ 281 (345)
T PF07611_consen 252 FFLEKFLKLAKENGIPVVLWWPKVSPPYEK 281 (345)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeccCHHHHH
Confidence 45678999999999999998 777655433
No 145
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=26.10 E-value=75 Score=26.15 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=24.7
Q ss_pred CCCCceEEEecCCCcCCCCC-cHHHHHHHHHHHHHhHHhC
Q 034374 9 KLPVSHVIHTVGPVFNFHCN-PEDILRSAYKNCLSVGKAN 47 (96)
Q Consensus 9 ~L~~k~IiH~v~P~~~~~~~-~~~~L~~~~~~~L~~a~~~ 47 (96)
...-|.|||-++|-|+...+ -...-.++...++++++.+
T Consensus 168 YyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d 207 (625)
T KOG1707|consen 168 YYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSD 207 (625)
T ss_pred hhhhheeeccCccccccccccccHHHHHHHHHHHhhhccc
Confidence 34458999999999986542 2334455555666665443
No 146
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=25.72 E-value=2.6e+02 Score=20.18 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=27.0
Q ss_pred CceEEEecCCCcCCCC--CcHHHHHH---HHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHC--NPEDILRS---AYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~--~~~~~L~~---~~~~~L~~a~~~~~~SIAf 54 (96)
++.|||.+|....... +..+.++. ...+.++.|.+.+.+++-+
T Consensus 75 iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~ 122 (324)
T TIGR03589 75 VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVA 122 (324)
T ss_pred CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6899999986542211 22233332 4457778888888877765
No 147
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=25.72 E-value=2.5e+02 Score=21.90 Aligned_cols=54 Identities=11% Similarity=0.170 Sum_probs=39.1
Q ss_pred HHHHHhHHhCCCcEEEecccccCCCCc-ChHHHHHHHHHHH---------HHHHhcCCceEEEE
Q 034374 38 KNCLSVGKANNIQYIAFPAISCGVSQY-PPDEAATIAISTV---------KEFANDFKEVSHDK 91 (96)
Q Consensus 38 ~~~L~~a~~~~~~SIAfPaigtG~~g~-p~~~~a~~~~~~i---------~~~~~~~~~v~~Vi 91 (96)
+.+++.|.++|.--+-+-.+.-|..-+ +|+++.++.-..- .+|+-++++|..|+
T Consensus 186 ~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vl 249 (391)
T COG1453 186 TEGLKYAASKGLGIFIMEPLDGGGLLYNVPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVL 249 (391)
T ss_pred cHHHHHHHhCCCcEEEEeeCCCCCcccCCCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEe
Confidence 688999999999999996666666555 7777777664443 34555778887764
No 148
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=25.64 E-value=1e+02 Score=20.39 Aligned_cols=21 Identities=10% Similarity=0.347 Sum_probs=16.8
Q ss_pred HHHHHHHHHhHHhCCCcEEEe
Q 034374 34 RSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 34 ~~~~~~~L~~a~~~~~~SIAf 54 (96)
+..++.+.+.|.+++++|+.+
T Consensus 22 q~Li~~~~~~a~~~~~~~~v~ 42 (157)
T PF06574_consen 22 QKLIKKAVEIAKEKGLKSVVL 42 (157)
T ss_dssp HHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHhhhhhhcccceEEE
Confidence 456778889999999999887
No 149
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=25.59 E-value=2.2e+02 Score=23.40 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=37.2
Q ss_pred CCCceEEEecCCCcCCCC--CcHHHHHHHH---HHHHHhHHhCCCcEEEecccccCCCCcChH
Q 034374 10 LPVSHVIHTVGPVFNFHC--NPEDILRSAY---KNCLSVGKANNIQYIAFPAISCGVSQYPPD 67 (96)
Q Consensus 10 L~~k~IiH~v~P~~~~~~--~~~~~L~~~~---~~~L~~a~~~~~~SIAfPaigtG~~g~p~~ 67 (96)
.+.++|+|++.-+--.-. +..+.+++-+ .|+++.|.++|++.+. +|||...=.|.+
T Consensus 324 ~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V--~iSTDKAV~PtN 384 (588)
T COG1086 324 HKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFV--LISTDKAVNPTN 384 (588)
T ss_pred CCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEE--EEecCcccCCch
Confidence 457899999974321111 3344444433 4888899999999866 488887766664
No 150
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=25.56 E-value=1.6e+02 Score=20.36 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=19.4
Q ss_pred CceEEEecCCCcCC-CCCc-HHHHHHHHHHHHHhHHhCCCc
Q 034374 12 VSHVIHTVGPVFNF-HCNP-EDILRSAYKNCLSVGKANNIQ 50 (96)
Q Consensus 12 ~k~IiH~v~P~~~~-~~~~-~~~L~~~~~~~L~~a~~~~~~ 50 (96)
++.|||+++...-. ..++ .+.=-...++.+++|.+.+.+
T Consensus 88 v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~ 128 (249)
T PF07993_consen 88 VDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGKRK 128 (249)
T ss_dssp --EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS--
T ss_pred cceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhccCc
Confidence 57899999874433 2222 223345677888888865544
No 151
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=25.56 E-value=90 Score=22.77 Aligned_cols=48 Identities=4% Similarity=-0.121 Sum_probs=27.0
Q ss_pred eeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 3 KECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 3 ~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
-+|.+.+|.|+|=..--++.|.... -+.+.+.+ .++.+.+.|++.|.|
T Consensus 22 ~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~----~i~~~~~~gi~~I~~ 71 (331)
T PRK00164 22 SVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIER----LVRAFVALGVRKVRL 71 (331)
T ss_pred EEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHH----HHHHHHHCCCCEEEE
Confidence 4789999999864322222222211 12333333 344455669999998
No 152
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=25.44 E-value=2.3e+02 Score=21.44 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=33.3
Q ss_pred HHHHHHhHHhCCCcEEEe-cccc------c-CCCCcChHHHHHHHHHHHHHHHh
Q 034374 37 YKNCLSVGKANNIQYIAF-PAIS------C-GVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 37 ~~~~L~~a~~~~~~SIAf-Paig------t-G~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
..+-++.+.++|+++|.+ |... . |...+.++-..+-+++.+++-..
T Consensus 53 l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~p 106 (320)
T cd04824 53 LEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFP 106 (320)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCC
Confidence 444567778999999986 4431 2 67778888888888888876553
No 153
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=25.09 E-value=1.5e+02 Score=23.88 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=27.0
Q ss_pred CCceEEEecCCCcC--CC--C-CcHHHH---HHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFN--FH--C-NPEDIL---RSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~--~~--~-~~~~~L---~~~~~~~L~~a~~~~~~SIAf 54 (96)
..++|||+++..-. .+ . +..+.. .....+.++.|.+.|++-|-+
T Consensus 428 ~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~ 479 (668)
T PLN02260 428 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNF 479 (668)
T ss_pred CCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEE
Confidence 56899999985421 11 0 112222 335668888899999876644
No 154
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=24.97 E-value=2.5e+02 Score=19.71 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
.+.-.+.++++++.|.+.|.+.|.+..-.. .+-+.++.-+.+++.+++..+.
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~--~~~~~~~~~~~~~~~l~~l~~~ 131 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGSY--LGQSKEEGLKRVIEALNELIDK 131 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHHHHHh
Confidence 455667788999999999999988843211 1235666667777777777764
No 155
>PLN02650 dihydroflavonol-4-reductase
Probab=24.90 E-value=2.7e+02 Score=20.11 Aligned_cols=44 Identities=14% Similarity=0.303 Sum_probs=26.4
Q ss_pred CceEEEecCCCcCCCCCc-HHHHH---HHHHHHHHhHHhCC-CcEEEec
Q 034374 12 VSHVIHTVGPVFNFHCNP-EDILR---SAYKNCLSVGKANN-IQYIAFP 55 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~-~~~L~---~~~~~~L~~a~~~~-~~SIAfP 55 (96)
+++|||.+++.-....+. .+.++ ....+.|+.|.+.+ .+.+-+.
T Consensus 78 ~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~ 126 (351)
T PLN02650 78 CTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFT 126 (351)
T ss_pred CCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 689999998742211111 12332 34567788887766 6777664
No 156
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=24.72 E-value=3e+02 Score=20.97 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcC------hHHHHHHHHHHHHHH
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP------PDEAATIAISTVKEF 80 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p------~~~~a~~~~~~i~~~ 80 (96)
..++.. +++++.|.+.|.+.|.+- .|..|.+ .+++-+.+.+.+++-
T Consensus 112 ~ai~~~-kraId~A~eLGa~~v~v~---~G~~g~~~~~~~d~~~a~~~~~e~L~~l 163 (382)
T TIGR02631 112 YALRKV-LRNMDLGAELGAETYVVW---GGREGAEYDGAKDVRAALDRMREALNLL 163 (382)
T ss_pred HHHHHH-HHHHHHHHHhCCCEEEEc---cCCCCCcCccccCHHHHHHHHHHHHHHH
Confidence 345555 899999999999998652 4544432 244545555555443
No 157
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=24.69 E-value=84 Score=20.88 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=31.6
Q ss_pred CceEEEecCCCc--CCCCCcH---HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcC
Q 034374 12 VSHVIHTVGPVF--NFHCNPE---DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65 (96)
Q Consensus 12 ~k~IiH~v~P~~--~~~~~~~---~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p 65 (96)
.+.|||++++.- ....... +.--...++.|+.+.+.+.+.+-++.= ++.+|-+
T Consensus 66 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS-~~~y~~~ 123 (236)
T PF01370_consen 66 IDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSS-ASVYGDP 123 (236)
T ss_dssp ESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-GGGGTSS
T ss_pred ceEEEEeeccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 478999999741 1001112 223456778899999999966666432 4454443
No 158
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=24.65 E-value=2e+02 Score=20.17 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=24.6
Q ss_pred CceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
++.|||.+++.-....+..+..+ ....+.++.+.+.+.+.+-+
T Consensus 65 ~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 110 (328)
T TIGR03466 65 CRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVY 110 (328)
T ss_pred CCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 68999999753111111122221 23456777777888877665
No 159
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=24.60 E-value=2.1e+02 Score=21.92 Aligned_cols=58 Identities=9% Similarity=-0.155 Sum_probs=31.7
Q ss_pred eccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcCh
Q 034374 4 ECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66 (96)
Q Consensus 4 ~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~ 66 (96)
++.|.+..|.| +..|.+.+..... -..+.++.+-. ..+.|++.|.|-..-++.+|.+.
T Consensus 139 isrGC~~~Csf---C~ip~~~G~~rsr-~~e~Vl~Ei~~-l~~~G~~ei~l~g~d~~~yg~d~ 196 (420)
T TIGR01578 139 INQGCLGNCSY---CITKHARGKLASY-PPEKIVEKARQ-LVAEGCKEIWITSQDTGAYGRDI 196 (420)
T ss_pred EccCCCCCCCC---CccccCCCCcccC-CHHHHHHHHHH-HHHCCCeEEEEEeeccccccCCC
Confidence 56677777885 2234333322110 12222222222 23469999999887788887763
No 160
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=24.41 E-value=1.9e+02 Score=20.69 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCC
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 63 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g 63 (96)
+++.+.....+++...++.|+.-|-+ ++||.|.
T Consensus 68 s~~~v~~~lq~~i~~le~~G~d~ill--lCTG~F~ 100 (221)
T PF07302_consen 68 SKKKVEPRLQACIAQLEAQGYDVILL--LCTGEFP 100 (221)
T ss_pred EHHHHHHHHHHHHHHHHHCCCCEEEE--eccCCCC
Confidence 57899999999999999999998876 6677654
No 161
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=24.35 E-value=2.7e+02 Score=19.83 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=25.7
Q ss_pred CCceEEEecCCCcCCCC--CcHHHHHH---HHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHC--NPEDILRS---AYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L~~---~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|+|.++....... ...+.++. ...+.++.+.+.|.+.+-+
T Consensus 73 ~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 121 (338)
T PRK10675 73 AIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIF 121 (338)
T ss_pred CCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 47899999875321111 12222322 3456777778888887665
No 162
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=24.34 E-value=3.8e+02 Score=21.55 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=59.1
Q ss_pred CCCCCceEEEecCCCcCC---------CC-----CcHHHHHHHHHHHHHhHHh------CCCcEEEecccccCCCCcCh-
Q 034374 8 FKLPVSHVIHTVGPVFNF---------HC-----NPEDILRSAYKNCLSVGKA------NNIQYIAFPAISCGVSQYPP- 66 (96)
Q Consensus 8 g~L~~k~IiH~v~P~~~~---------~~-----~~~~~L~~~~~~~L~~a~~------~~~~SIAfPaigtG~~g~p~- 66 (96)
..++++|.+-++|-.-+. +. ...+.++.-+-.+|+.|+. ..-+...|-..|-|..|...
T Consensus 155 ~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFA 234 (491)
T KOG2495|consen 155 FVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFA 234 (491)
T ss_pred eeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeeh
Confidence 357789999999843221 00 2357788888899998854 45678888899999999765
Q ss_pred HHHHHHHHHHHHHHHhcCC-ceEEEE
Q 034374 67 DEAATIAISTVKEFANDFK-EVSHDK 91 (96)
Q Consensus 67 ~~~a~~~~~~i~~~~~~~~-~v~~Vi 91 (96)
.+.++.+.+-++++...++ ++++.+
T Consensus 235 aEL~Dfi~~Dl~k~yp~l~~~i~vtL 260 (491)
T KOG2495|consen 235 AELADFIPEDLRKIYPELKKDIKVTL 260 (491)
T ss_pred HHHHHHHHHHHHHhhhcchhheEEEe
Confidence 5666677777888877665 355543
No 163
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=24.15 E-value=91 Score=24.15 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=15.3
Q ss_pred CceEEEecCCCcCCCCCcHHHH
Q 034374 12 VSHVIHTVGPVFNFHCNPEDIL 33 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L 33 (96)
|-...|.+||-|-+.-.+.+.+
T Consensus 263 Cg~~~~~~GPlW~GpL~d~~f~ 284 (380)
T COG1867 263 CGGKVHLAGPLWLGPLHDEEFI 284 (380)
T ss_pred ccccceeccCcccCcccCHHHH
Confidence 4558999999998865333333
No 164
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=24.14 E-value=2.8e+02 Score=20.00 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEe---cccccCCCC-cChHHHHHHHHHHHHHHHhcCC-ceEEEE
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAF---PAISCGVSQ-YPPDEAATIAISTVKEFANDFK-EVSHDK 91 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAf---PaigtG~~g-~p~~~~a~~~~~~i~~~~~~~~-~v~~Vi 91 (96)
..+.++......++.+.+.|+.-+=+ |...+-..| ++.++..+.+.+++.++.+..+ .+++++
T Consensus 72 ~~e~~~~~~~~~l~~~~~dnV~YlElr~~P~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~i~~~li~ 139 (331)
T PF00962_consen 72 TPEDLRRYAYEVLEDFAEDNVVYLELRFSPQFHAQLGGNLSFDEVVEAIIEGIDRAEKEFGIKVRLII 139 (331)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEEESHHHHHTTTCSSTHHHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEEeccccccccCCCCCHHHHHHHHHhhhhhccccccccccccc
Confidence 35677888888888888888876544 444333222 8999999999999999877666 455444
No 165
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=24.03 E-value=93 Score=19.82 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=15.1
Q ss_pred HHHHHHhHHhCCCcEEEec
Q 034374 37 YKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 37 ~~~~L~~a~~~~~~SIAfP 55 (96)
+-++++.|.++|.+.|++.
T Consensus 119 vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 119 VIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 4567889999999999973
No 166
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=23.54 E-value=2e+02 Score=20.81 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=23.2
Q ss_pred CCceEEEecCCCcCCC--CCcHHHH---HHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFH--CNPEDIL---RSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~--~~~~~~L---~~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||+++...... .+..... .....++++.|.+.+ +.+-+
T Consensus 68 ~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~ 115 (347)
T PRK11908 68 KCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVF 115 (347)
T ss_pred CCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEE
Confidence 4789999987432111 1112122 233457788888777 44444
No 167
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=23.37 E-value=3.6e+02 Score=20.96 Aligned_cols=65 Identities=5% Similarity=-0.031 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEe---cccccCCCCcC------hHHHHHHHHHHHHHHHh----cCCceEEEEEeee
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAF---PAISCGVSQYP------PDEAATIAISTVKEFAN----DFKEVSHDKFCLM 95 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAf---PaigtG~~g~p------~~~~a~~~~~~i~~~~~----~~~~v~~Vi~~~~ 95 (96)
..+-+.+.+.++...+.|.+.|++ |.+|+=-.... .+..++..=+.+++-++ +++.++++.++.|
T Consensus 257 ~~vV~~~~~~l~~Ly~lGARk~vV~nlpPlGC~P~~~~~~~~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~y 334 (408)
T PRK15381 257 IMVVEQQIDDIEKIISGGVNNVLVMGIPDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYETA 334 (408)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEhH
Confidence 456667777888888999999998 45554222111 11122221112222222 4577888888865
No 168
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=23.15 E-value=90 Score=22.52 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=17.1
Q ss_pred HHHHHHhHHhCCCcEEEeccc
Q 034374 37 YKNCLSVGKANNIQYIAFPAI 57 (96)
Q Consensus 37 ~~~~L~~a~~~~~~SIAfPai 57 (96)
+..+++.|.++|.+.|++...
T Consensus 193 ~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 193 IVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred HHHHHHHHHHCCCcEEEEcCC
Confidence 456788999999999999543
No 169
>PF12909 DUF3832: Protein of unknown function (DUF3832); InterPro: IPR024308 This domain found in bacteria and Acanthamoeba polyphaga mimivirus (APMV) L591 protein has no known function. In Q0AZ30 from SWISSPROT and other uncharacterised proteins this domain is found C-terminal, while the N terminus shows remote homology to the bacterial toxin/antitoxin 'addiction module' (PF12910 from PFAM).; PDB: 3K6Q_C.
Probab=23.03 E-value=1e+02 Score=18.80 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=28.2
Q ss_pred HhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 45 KANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 45 ~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
+..|.-++.+|-+--=.-|=..++|.+-+++.+++|.+
T Consensus 14 e~dg~~~~~l~~ldi~~~g~T~eeA~~~lie~l~dYAe 51 (89)
T PF12909_consen 14 EDDGSITVSLPELDIYANGPTLEEAIEDLIEDLRDYAE 51 (89)
T ss_dssp EETTEEEEEECCGTEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEecCeeEEecCCCHHHHHHHHHHHHHHHHH
Confidence 34455588887776545556778999999999999876
No 170
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=22.84 E-value=3.1e+02 Score=20.06 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=47.1
Q ss_pred ceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEE
Q 034374 13 SHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDK 91 (96)
Q Consensus 13 k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi 91 (96)
.|.|....|.- +..++=++|+.+=|+.|+++|+.---|-. |+- .|-.++++...+.+.+-.-.+.-+.|.+|+
T Consensus 72 sYliN~~npd~----ek~eks~~~~vDdl~Rce~LGIgmYN~HP-GSt-~~~~kee~l~~ia~~in~a~eetk~V~ivl 144 (281)
T KOG3997|consen 72 SYLINAGNPDA----EKLEKSRECFVDDLQRCEKLGIGMYNFHP-GST-VGKEKEECLTTIAETINFAVEETKNVIIVL 144 (281)
T ss_pred chhcccCCccH----HHHHHHHHHHHHHHHHHHHhCceeeecCC-Ccc-ccccHHHHHHHHHHHHHHHHHhccceEEEe
Confidence 46666666642 23456677888899999999876555532 221 233778887777777766666666666554
No 171
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=22.55 E-value=2.7e+02 Score=21.15 Aligned_cols=46 Identities=13% Similarity=0.087 Sum_probs=30.6
Q ss_pred HHHHHHhHHhCCCcEEEe-cccc----cCCCCcChHHHHHHHHHHHHHHHh
Q 034374 37 YKNCLSVGKANNIQYIAF-PAIS----CGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 37 ~~~~L~~a~~~~~~SIAf-Paig----tG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
...-++.+.++|+++|.+ |... .|...+.++-..+-+++.+++-..
T Consensus 63 l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~p 113 (322)
T PRK13384 63 LADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGLLARMVRTIKAAVP 113 (322)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCChHHHHHHHHHHHCC
Confidence 445567778999999984 4322 255566777777777777766543
No 172
>PLN02996 fatty acyl-CoA reductase
Probab=22.19 E-value=2.5e+02 Score=22.03 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=24.7
Q ss_pred CceEEEecCCCcCCCCCcHHHH---HHHHHHHHHhHHhC-CCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNPEDIL---RSAYKNCLSVGKAN-NIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L---~~~~~~~L~~a~~~-~~~SIAf 54 (96)
++.|||+++..-... +..... -....+.|+.|.+. +++.+-+
T Consensus 113 vD~ViH~AA~v~~~~-~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~ 158 (491)
T PLN02996 113 IDIVVNLAATTNFDE-RYDVALGINTLGALNVLNFAKKCVKVKMLLH 158 (491)
T ss_pred CCEEEECccccCCcC-CHHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 689999998753221 212222 23446777888774 6665544
No 173
>PRK12829 short chain dehydrogenase; Provisional
Probab=22.08 E-value=2.6e+02 Score=18.88 Aligned_cols=12 Identities=8% Similarity=0.266 Sum_probs=10.3
Q ss_pred CCceEEEecCCC
Q 034374 11 PVSHVIHTVGPV 22 (96)
Q Consensus 11 ~~k~IiH~v~P~ 22 (96)
+++.|||.+|+.
T Consensus 86 ~~d~vi~~ag~~ 97 (264)
T PRK12829 86 GLDVLVNNAGIA 97 (264)
T ss_pred CCCEEEECCCCC
Confidence 579999999975
No 174
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=21.90 E-value=3.6e+02 Score=20.40 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=25.7
Q ss_pred eeccCCCCCCceEEEecCCCcCCC-C-CcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 3 KECRGFKLPVSHVIHTVGPVFNFH-C-NPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 3 ~~T~ag~L~~k~IiH~v~P~~~~~-~-~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
-+|...||.|+|=..--++.+... . -+.+.+. ..++...+.|++.|.|
T Consensus 63 svT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~----~~i~~~~~~Gv~~I~~ 112 (373)
T PLN02951 63 SLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIV----RLAGLFVAAGVDKIRL 112 (373)
T ss_pred EEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHH----HHHHHHHHCCCCEEEE
Confidence 479999999986321112221111 1 1122232 2345556789999987
No 175
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=21.89 E-value=1e+02 Score=20.13 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCC---CCcCh--HHHHHHHHHHHHHHHhcCCc--eEEEEEe
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGV---SQYPP--DEAATIAISTVKEFANDFKE--VSHDKFC 93 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~---~g~p~--~~~a~~~~~~i~~~~~~~~~--v~~Vi~~ 93 (96)
+++.+-++.+|..--+-|+.-+--|=.-||. .|.|. ...+.-++.++.+++.+++. ||++-|+
T Consensus 22 ~qi~~QVrylL~QGykigvE~~d~rrprtgsWt~wg~p~f~~~~~~evlaele~Cr~dhp~eYIRliGfD 91 (127)
T COG4451 22 EQIAEQVRYLLSQGYKIGVEYVDDRRPRTGSWTMWGTPMFGAKTAGEVLAELEACRADHPGEYIRLIGFD 91 (127)
T ss_pred HHHHHHHHHHHhCCcccceeecccCCcccceeeecCCccccccchHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 4556666666655444444443333333332 22221 34455667889999988763 7777665
No 176
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=21.70 E-value=3.1e+02 Score=19.52 Aligned_cols=42 Identities=5% Similarity=-0.011 Sum_probs=25.0
Q ss_pred CCceEEEecCCCcCCCC--CcHHHH---HHHHHHHHHhHHhCCCcEE
Q 034374 11 PVSHVIHTVGPVFNFHC--NPEDIL---RSAYKNCLSVGKANNIQYI 52 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L---~~~~~~~L~~a~~~~~~SI 52 (96)
+++.|||+++....... +..... .....+.++.|.+.|.+-|
T Consensus 54 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v 100 (299)
T PRK09987 54 RPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVV 100 (299)
T ss_pred CCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 46899999987543322 111111 2245578888888886543
No 177
>PLN02206 UDP-glucuronate decarboxylase
Probab=21.68 E-value=1.8e+02 Score=22.52 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=24.5
Q ss_pred CCceEEEecCCCcCCC--CCcHHHHH---HHHHHHHHhHHhCCCcEE
Q 034374 11 PVSHVIHTVGPVFNFH--CNPEDILR---SAYKNCLSVGKANNIQYI 52 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~--~~~~~~L~---~~~~~~L~~a~~~~~~SI 52 (96)
.++.|||++++.-... .+..+.++ ....+.|+.|.+.|.+-|
T Consensus 183 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V 229 (442)
T PLN02206 183 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 229 (442)
T ss_pred CCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 4799999998532111 12222222 234678888888886533
No 178
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=21.60 E-value=2.5e+02 Score=21.62 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=24.8
Q ss_pred CCCceEEEecCCCcC--CCCCcHHHHH---HHHHHHHHhHHhCCCcEE
Q 034374 10 LPVSHVIHTVGPVFN--FHCNPEDILR---SAYKNCLSVGKANNIQYI 52 (96)
Q Consensus 10 L~~k~IiH~v~P~~~--~~~~~~~~L~---~~~~~~L~~a~~~~~~SI 52 (96)
..++.|||++++.-. ...+..+.++ ....+.++.|.+.+.+=|
T Consensus 183 ~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V 230 (436)
T PLN02166 183 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFL 230 (436)
T ss_pred cCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 358999999985321 1112222232 234677888888886544
No 179
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=21.44 E-value=2.1e+02 Score=17.59 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCceEEEEEeee
Q 034374 66 PDEAATIAISTVKEFANDFKEVSHDKFCLM 95 (96)
Q Consensus 66 ~~~~a~~~~~~i~~~~~~~~~v~~Vi~~~~ 95 (96)
.+.+.+.+++.|.+.+.+-..|.++-|-.|
T Consensus 22 a~~~v~~~~~~i~~aL~~G~~V~l~gFG~F 51 (94)
T COG0776 22 AEEAVDAFLEEITEALAKGERVELRGFGTF 51 (94)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEeeeeee
Confidence 356667778888888888888888877655
No 180
>PRK06233 hypothetical protein; Provisional
Probab=21.41 E-value=3.7e+02 Score=20.34 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCCCCcCh-----------HHHHHHHHHHHHHHHhcCC-ceEEEEEeee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGVSQYPP-----------DEAATIAISTVKEFANDFK-EVSHDKFCLM 95 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~g~p~-----------~~~a~~~~~~i~~~~~~~~-~v~~Vi~~~~ 95 (96)
...|.++|+.-++...+.|++.|=| |+++.+.-..+. ...++..++++.+-++..+ ++++-++.|+
T Consensus 166 ~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~d~~i~~H~C~ 245 (372)
T PRK06233 166 LDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADLPEDLTVTTHICR 245 (372)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCCCcCCEEEEEeeC
Confidence 3567788888888888999999999 988876543222 1333444455666666665 5676667664
No 181
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=20.96 E-value=2.2e+02 Score=17.68 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhcCCc--eEEEEEe
Q 034374 71 TIAISTVKEFANDFKE--VSHDKFC 93 (96)
Q Consensus 71 ~~~~~~i~~~~~~~~~--v~~Vi~~ 93 (96)
...+.++.++++.+++ ||++-|+
T Consensus 60 ~~Vl~ei~~C~~~~p~~YVRliG~D 84 (99)
T cd03527 60 AQVLREIEACRKAYPDHYVRVVGFD 84 (99)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 4456888888888764 8887776
No 182
>TIGR03271 methan_mark_5 putative methanogenesis marker protein 5. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.96 E-value=1.1e+02 Score=20.29 Aligned_cols=23 Identities=22% Similarity=0.613 Sum_probs=19.1
Q ss_pred CCcCh-HHHHHHHHHHHHHHHhcC
Q 034374 62 SQYPP-DEAATIAISTVKEFANDF 84 (96)
Q Consensus 62 ~g~p~-~~~a~~~~~~i~~~~~~~ 84 (96)
..||. ++-+..++..+.+|++++
T Consensus 119 l~YP~~~e~~~~~V~~i~~FL~~l 142 (142)
T TIGR03271 119 LDYPTSEEEGIIFVRKINDFLDSL 142 (142)
T ss_pred eeCCCChhHHHHHHHHHHHHHhcC
Confidence 35777 888999999999999864
No 183
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.74 E-value=1.3e+02 Score=16.69 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=15.7
Q ss_pred HHHHHHhHHhCCCcEEEec
Q 034374 37 YKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 37 ~~~~L~~a~~~~~~SIAfP 55 (96)
..+.++.+.++|.+.|++.
T Consensus 63 ~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 63 LLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5567788899999999986
No 184
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=20.62 E-value=1.9e+02 Score=16.60 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCceEEEEEee
Q 034374 71 TIAISTVKEFANDFKEVSHDKFCL 94 (96)
Q Consensus 71 ~~~~~~i~~~~~~~~~v~~Vi~~~ 94 (96)
+-+++.|++|+.++.+|..+=+..
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEcc
Confidence 346788999999988887665443
No 185
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=20.62 E-value=1.1e+02 Score=19.43 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.6
Q ss_pred HHHHhHHhCCCcEEEeccc
Q 034374 39 NCLSVGKANNIQYIAFPAI 57 (96)
Q Consensus 39 ~~L~~a~~~~~~SIAfPai 57 (96)
+.++.|.++|++.||+.-=
T Consensus 20 e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 20 EYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp HHHHHHHHTTESEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEcCC
Confidence 4458899999999999655
No 186
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=20.50 E-value=31 Score=19.42 Aligned_cols=15 Identities=7% Similarity=0.386 Sum_probs=12.1
Q ss_pred HhCCCcEEEeccccc
Q 034374 45 KANNIQYIAFPAISC 59 (96)
Q Consensus 45 ~~~~~~SIAfPaigt 59 (96)
..+++.||++|.++.
T Consensus 26 ~~~kv~tVVlP~l~~ 40 (56)
T PF15012_consen 26 AQQKVFTVVLPTLAA 40 (56)
T ss_pred HHHhheeEehhHHHH
Confidence 456899999998864
No 187
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=20.48 E-value=1.2e+02 Score=18.84 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=15.3
Q ss_pred HHHHHHhHHhCCCcEEEe
Q 034374 37 YKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 37 ~~~~L~~a~~~~~~SIAf 54 (96)
-.++++.+.++|+++|++
T Consensus 14 a~r~~ra~r~~Gi~tv~v 31 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAV 31 (110)
T ss_dssp HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhCCcceec
Confidence 456788899999999998
No 188
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=20.45 E-value=1.4e+02 Score=22.03 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=27.5
Q ss_pred ceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCC
Q 034374 13 SHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNI 49 (96)
Q Consensus 13 k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~ 49 (96)
+|.|-+.+|++. ..++.|+++..++++...++|-
T Consensus 222 rYri~v~a~dyk---kaee~l~~a~~~~~~~ikk~gg 255 (269)
T COG1093 222 RYRIDVQAPDYK---KAEEVLEKAAEAAIKTIKKLGG 255 (269)
T ss_pred eEEEEEecCCHH---HHHHHHHHHHHHHHHHHHHhCC
Confidence 677888888775 3577999999999999988764
No 189
>PRK00865 glutamate racemase; Provisional
Probab=20.37 E-value=3.3e+02 Score=19.37 Aligned_cols=33 Identities=6% Similarity=0.113 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHHHHhHHhCCCcEEEecccccC
Q 034374 28 NPEDILRSAYKNCLSVGKANNIQYIAFPAISCG 60 (96)
Q Consensus 28 ~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG 60 (96)
.+.+.+.+...+.++...+.|++-|.+||-+.-
T Consensus 47 ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~ 79 (261)
T PRK00865 47 KSEEEIRERTLEIVEFLLEYGVKMLVIACNTAS 79 (261)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH
Confidence 567889999999999999999999999988753
No 190
>cd08481 PBP2_GcdR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators GcdR-like, contains the type 2 periplasmic binding fold. GcdR is involved in the glutaconate/glutarate-specific activation of the Pg promoter driving expression of a glutaryl-CoA dehydrogenase-encoding gene (gcdH). The GcdH protein is essential for the anaerobic catabolism of many aromatic compounds and some alicyclic and dicarboxylic acids. The structural topology of this substrate-binding domain is most similar to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplas
Probab=20.32 E-value=1.9e+02 Score=17.73 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=22.3
Q ss_pred CcChHHHHHHHHHHHHHHHhcCCceEEEEE
Q 034374 63 QYPPDEAATIAISTVKEFANDFKEVSHDKF 92 (96)
Q Consensus 63 g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~ 92 (96)
|.+...+...+...+.+|.++++++++-+.
T Consensus 5 g~~~~~~~~~l~~~l~~f~~~~P~i~i~i~ 34 (194)
T cd08481 5 AVLPTFGTRWLIPRLPDFLARHPDITVNLV 34 (194)
T ss_pred EecHHHHHHHHHhhhhHHHHHCCCceEEEE
Confidence 455666667778888999998888776543
No 191
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=20.13 E-value=1.8e+02 Score=21.36 Aligned_cols=48 Identities=6% Similarity=0.003 Sum_probs=26.4
Q ss_pred eeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 3 KECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 3 ~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
-+|...||.|+|=.....+.+....-+.+. +.+.++.+.+.|...|.|
T Consensus 12 eiT~~CNl~C~~C~~~~~~~~~~~~l~~e~----~~~ii~~~~~~g~~~v~~ 59 (358)
T TIGR02109 12 ELTHRCPLQCPYCSNPLELARRKAELTTEE----WTDVLTQAAELGVLQLHF 59 (358)
T ss_pred eeccccCcCCCCCCCChhcccccCCCCHHH----HHHHHHHHHhcCCcEEEE
Confidence 479999999985332221222221112223 334555666778888877
No 192
>PF13982 YbfN: YbfN-like lipoprotein
Probab=20.02 E-value=97 Score=18.91 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHHHHhHHh
Q 034374 29 PEDILRSAYKNCLSVGKA 46 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~ 46 (96)
+...|+++|+.|+..++-
T Consensus 7 eds~lk~aYsaCIntaeG 24 (89)
T PF13982_consen 7 EDSKLKQAYSACINTAEG 24 (89)
T ss_pred HHHHHHHHHHHHHhhccC
Confidence 456799999999988763
Done!