Query 034374
Match_columns 96
No_of_seqs 121 out of 1007
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 22:03:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q71_A Poly [ADP-ribose] polym 100.0 3.6E-34 1.2E-38 200.6 11.8 95 1-95 100-197 (221)
2 1spv_A Putative polyprotein/ph 100.0 2.1E-33 7.1E-38 191.9 12.4 95 1-95 64-159 (184)
3 3q6z_A Poly [ADP-ribose] polym 100.0 4E-33 1.4E-37 194.5 10.5 95 1-95 98-197 (214)
4 2xd7_A Core histone macro-H2A. 100.0 1.4E-32 4.7E-37 189.1 12.4 94 1-95 83-178 (193)
5 1yd9_A Core histone macro-H2A. 100.0 1.9E-32 6.5E-37 188.4 12.3 94 1-95 80-175 (193)
6 2x47_A Macro domain-containing 100.0 2.4E-32 8.2E-37 192.9 11.0 95 1-95 119-216 (235)
7 4abl_A Poly [ADP-ribose] polym 100.0 2.8E-31 9.6E-36 181.5 11.3 86 1-95 79-166 (183)
8 2dx6_A Hypothetical protein TT 100.0 1.5E-30 5.1E-35 173.9 9.1 89 1-92 59-147 (159)
9 3kh6_A Poly [ADP-ribose] polym 100.0 2E-29 7E-34 174.2 11.4 86 1-95 90-177 (199)
10 3gpg_A NSP3, non-structural pr 100.0 2.5E-30 8.6E-35 174.7 6.3 88 1-92 62-152 (168)
11 1vhu_A Hypothetical protein AF 100.0 9.2E-30 3.2E-34 177.1 7.9 91 1-95 88-185 (211)
12 3gqe_A Non-structural protein 100.0 3.9E-29 1.3E-33 168.9 8.8 90 1-93 56-147 (168)
13 3ejf_A Non-structural protein 99.9 5.8E-28 2E-32 164.2 7.4 82 2-93 81-162 (176)
14 3eti_A X (ADRP) domain, macro 99.9 1.8E-28 6.2E-33 165.6 4.7 81 1-93 75-155 (168)
15 1njr_A 32.1 kDa protein in ADH 99.9 9.4E-29 3.2E-33 178.5 3.1 94 1-95 119-235 (284)
16 4gua_A Non-structural polyprot 99.9 2.1E-26 7.1E-31 177.3 7.6 89 1-93 396-487 (670)
17 2acf_A Replicase polyprotein 1 99.9 7.6E-26 2.6E-30 154.4 5.6 78 1-92 85-162 (182)
18 3ejg_A Non-structural protein 99.9 1.5E-25 5.2E-30 154.1 5.7 77 1-92 103-179 (193)
19 2vri_A Non-structural protein 99.9 4.5E-24 1.5E-28 144.7 5.6 78 1-93 82-159 (174)
20 2eee_A Uncharacterized protein 99.8 8.9E-21 3.1E-25 125.4 9.2 84 1-93 64-148 (149)
21 2jyc_A Uncharacterized protein 99.8 1.2E-20 4.2E-25 126.2 9.4 84 1-93 75-159 (160)
22 2fg1_A Conserved hypothetical 99.7 2.3E-17 7.8E-22 109.8 9.2 85 1-93 67-157 (158)
23 3sig_A PArg, poly(ADP-ribose) 99.3 8.4E-12 2.9E-16 89.7 6.8 78 15-92 172-258 (277)
24 3dhn_A NAD-dependent epimerase 91.3 1.7 5.7E-05 28.2 8.2 43 12-55 68-110 (227)
25 2vg0_A Short-chain Z-isoprenyl 86.5 1.4 4.7E-05 30.4 5.2 51 32-83 31-81 (227)
26 3lgd_A Adenosine deaminase CEC 83.0 13 0.00045 28.4 9.6 65 30-94 195-266 (508)
27 3ugs_B Undecaprenyl pyrophosph 78.1 3.5 0.00012 28.4 4.6 49 33-82 35-83 (225)
28 3ew7_A LMO0794 protein; Q8Y8U8 76.3 7 0.00024 24.9 5.5 42 11-56 61-102 (221)
29 3qc0_A Sugar isomerase; TIM ba 74.9 15 0.00052 24.2 7.2 53 30-82 78-130 (275)
30 1ypx_A Putative vitamin-B12 in 73.9 13 0.00046 26.9 7.0 65 31-95 163-240 (375)
31 2d2r_A Undecaprenyl pyrophosph 73.2 10 0.00034 26.4 5.9 41 33-73 44-84 (245)
32 4h8e_A Undecaprenyl pyrophosph 72.2 5 0.00017 28.2 4.2 51 31-82 51-101 (256)
33 3h2s_A Putative NADH-flavin re 71.8 17 0.00057 23.2 9.5 42 11-55 62-103 (224)
34 3rys_A Adenosine deaminase 1; 68.9 17 0.0006 26.1 6.6 56 29-85 75-133 (343)
35 3sgv_B Undecaprenyl pyrophosph 68.1 4.7 0.00016 28.3 3.3 50 31-81 44-93 (253)
36 2zvr_A Uncharacterized protein 67.9 25 0.00084 23.6 7.6 60 30-90 108-167 (290)
37 3pao_A Adenosine deaminase; st 67.6 18 0.00063 25.7 6.5 56 29-85 72-130 (326)
38 3iar_A Adenosine deaminase; pu 65.2 37 0.0013 24.6 9.3 65 29-94 72-151 (367)
39 4gxw_A Adenosine deaminase; am 64.9 30 0.001 25.2 7.3 57 29-85 90-149 (380)
40 1f75_A Undecaprenyl pyrophosph 64.7 13 0.00044 25.9 5.0 39 32-70 48-86 (249)
41 2vg3_A Undecaprenyl pyrophosph 64.6 8.7 0.0003 27.3 4.2 41 33-73 84-124 (284)
42 1i60_A IOLI protein; beta barr 64.6 27 0.00093 22.9 7.0 53 30-83 79-131 (278)
43 3rpd_A Methionine synthase (B1 61.8 42 0.0014 24.2 8.0 60 30-95 166-227 (357)
44 1qtw_A Endonuclease IV; DNA re 59.8 35 0.0012 22.6 8.8 60 31-91 85-144 (285)
45 2pgf_A Adenosine deaminase; me 58.5 41 0.0014 24.1 7.0 61 29-89 109-173 (371)
46 3qas_B Undecaprenyl pyrophosph 58.0 9.5 0.00032 26.6 3.4 40 33-72 46-85 (253)
47 3ngf_A AP endonuclease, family 57.6 39 0.0013 22.4 9.8 52 29-82 87-138 (269)
48 3m2p_A UDP-N-acetylglucosamine 56.8 42 0.0014 22.6 9.1 44 11-54 62-106 (311)
49 1yya_A Triosephosphate isomera 55.5 9.4 0.00032 26.6 3.0 51 31-83 140-195 (250)
50 4id9_A Short-chain dehydrogena 53.9 49 0.0017 22.5 8.9 44 11-54 77-123 (347)
51 3l23_A Sugar phosphate isomera 53.9 50 0.0017 22.5 7.2 49 30-82 103-151 (303)
52 1aw2_A Triosephosphate isomera 53.7 16 0.00054 25.5 3.9 68 15-84 125-199 (256)
53 1u1j_A 5-methyltetrahydroptero 53.4 77 0.0026 25.3 8.3 66 30-95 580-650 (765)
54 2c20_A UDP-glucose 4-epimerase 53.2 49 0.0017 22.3 7.4 44 11-54 67-115 (330)
55 1k77_A EC1530, hypothetical pr 52.7 45 0.0015 21.7 9.9 53 29-82 79-131 (260)
56 3gpi_A NAD-dependent epimerase 52.6 3.5 0.00012 27.8 0.4 44 11-54 63-106 (286)
57 1tre_A Triosephosphate isomera 52.5 17 0.00058 25.4 3.9 67 15-83 123-196 (255)
58 2j27_A Triosephosphate isomera 52.0 17 0.00058 25.3 3.8 67 15-83 123-196 (250)
59 3sxp_A ADP-L-glycero-D-mannohe 51.2 37 0.0012 23.5 5.6 43 11-54 90-135 (362)
60 2btm_A TIM, protein (triosepho 49.6 8.3 0.00029 26.9 2.0 67 15-83 122-195 (252)
61 1m6j_A TIM, TPI, triosephospha 49.4 21 0.00071 25.0 4.0 67 15-83 130-203 (261)
62 3cqj_A L-ribulose-5-phosphate 49.2 56 0.0019 21.8 6.8 52 30-82 103-154 (295)
63 3st7_A Capsular polysaccharide 48.9 22 0.00075 24.8 4.1 43 12-54 47-91 (369)
64 2v5b_A Triosephosphate isomera 48.8 13 0.00045 25.8 2.8 67 15-83 117-190 (244)
65 1ney_A TIM, triosephosphate is 48.2 35 0.0012 23.6 5.0 67 15-83 122-193 (247)
66 3obe_A Sugar phosphate isomera 48.2 63 0.0022 22.1 8.3 59 29-91 108-168 (305)
67 2yc6_A Triosephosphate isomera 47.7 17 0.00058 25.4 3.3 67 15-83 124-199 (257)
68 1gy8_A UDP-galactose 4-epimera 47.3 68 0.0023 22.2 6.8 43 12-54 94-141 (397)
69 2i9e_A Triosephosphate isomera 47.3 38 0.0013 23.7 5.0 51 31-83 140-193 (259)
70 4b8w_A GDP-L-fucose synthase; 46.8 27 0.00093 23.1 4.2 44 11-54 61-110 (319)
71 2jl1_A Triphenylmethane reduct 46.4 42 0.0014 22.1 5.1 39 12-55 67-105 (287)
72 3e48_A Putative nucleoside-dip 45.6 61 0.0021 21.4 5.9 40 11-55 65-104 (289)
73 4egb_A DTDP-glucose 4,6-dehydr 45.4 69 0.0024 21.7 7.9 44 12-55 99-147 (346)
74 2qn6_B Translation initiation 44.4 20 0.00069 21.1 2.8 35 12-49 52-86 (93)
75 2vxn_A Triosephosphate isomera 43.7 21 0.00072 24.8 3.3 67 15-83 124-197 (251)
76 2c29_D Dihydroflavonol 4-reduc 43.5 74 0.0025 21.5 8.7 44 12-55 78-126 (337)
77 3aal_A Probable endonuclease 4 43.3 73 0.0025 21.4 7.4 59 31-91 90-148 (303)
78 3qst_A Triosephosphate isomera 43.3 26 0.00088 24.4 3.7 51 31-83 143-198 (255)
79 1mo0_A TIM, triosephosphate is 42.6 38 0.0013 23.9 4.5 67 15-83 142-213 (275)
80 1r2r_A TIM, triosephosphate is 42.3 35 0.0012 23.7 4.2 67 15-83 123-194 (248)
81 3ay3_A NAD-dependent epimerase 42.2 70 0.0024 20.9 8.7 41 12-54 64-107 (267)
82 3ruf_A WBGU; rossmann fold, UD 42.2 32 0.0011 23.5 4.1 44 11-54 100-148 (351)
83 2v6g_A Progesterone 5-beta-red 41.9 25 0.00084 24.1 3.4 39 12-53 73-116 (364)
84 3e8x_A Putative NAD-dependent 41.4 68 0.0023 20.5 6.7 42 11-54 84-128 (236)
85 3kwr_A Putative RNA-binding pr 40.4 39 0.0013 20.0 3.7 36 48-83 20-56 (97)
86 2gn4_A FLAA1 protein, UDP-GLCN 39.5 93 0.0032 21.5 8.6 69 11-79 91-164 (344)
87 3ktc_A Xylose isomerase; putat 39.2 92 0.0031 21.4 7.2 56 31-89 103-164 (333)
88 3ppg_A 5-methyltetrahydroptero 39.1 1.3E+02 0.0044 24.4 7.5 66 30-95 611-682 (789)
89 3ehe_A UDP-glucose 4-epimerase 38.7 86 0.0029 20.9 9.9 44 11-54 63-111 (313)
90 2nq5_A 5-methyltetrahydroptero 38.7 79 0.0027 25.2 6.2 66 30-95 565-635 (755)
91 1hdo_A Biliverdin IX beta redu 38.5 68 0.0023 19.7 8.5 42 12-55 68-109 (206)
92 3biy_A Histone acetyltransfera 37.4 19 0.00066 26.6 2.4 35 13-49 159-193 (380)
93 2c5a_A GDP-mannose-3', 5'-epim 37.1 44 0.0015 23.4 4.2 44 11-54 93-142 (379)
94 3dqp_A Oxidoreductase YLBE; al 36.9 79 0.0027 19.9 8.1 41 11-55 63-104 (219)
95 2yy7_A L-threonine dehydrogena 36.1 93 0.0032 20.6 6.2 44 11-54 68-115 (312)
96 4f4h_A Glutamine dependent NAD 35.4 1.5E+02 0.005 22.7 7.2 29 37-67 28-56 (565)
97 3enk_A UDP-glucose 4-epimerase 35.2 1E+02 0.0035 20.7 7.6 44 11-54 78-126 (341)
98 1xl7_A COT, peroxisomal carnit 35.1 42 0.0015 26.1 4.1 49 30-78 377-428 (612)
99 1e6u_A GDP-fucose synthetase; 34.9 35 0.0012 22.9 3.3 44 11-54 55-104 (321)
100 1y1p_A ARII, aldehyde reductas 34.5 89 0.003 20.9 5.3 43 11-54 83-129 (342)
101 1b9b_A TIM, protein (triosepho 34.2 18 0.00061 25.3 1.6 51 31-83 142-197 (255)
102 2rh8_A Anthocyanidin reductase 33.9 72 0.0024 21.6 4.8 43 12-54 81-128 (338)
103 3ta6_A Triosephosphate isomera 33.5 15 0.00051 25.8 1.2 32 50-83 167-201 (267)
104 2plx_B Peptide inhibitor; heli 33.3 26 0.00089 15.5 1.6 13 28-40 12-24 (26)
105 1y7t_A Malate dehydrogenase; N 33.3 83 0.0028 21.8 5.1 38 11-48 80-120 (327)
106 1nm8_A Carnitine O-acetyltrans 32.4 43 0.0015 26.1 3.7 49 30-78 369-420 (616)
107 2a35_A Hypothetical protein PA 32.1 44 0.0015 20.9 3.3 43 12-54 66-111 (215)
108 2hiq_A Hypothetical protein YD 32.0 53 0.0018 20.2 3.4 63 32-94 25-95 (113)
109 3dx5_A Uncharacterized protein 31.4 1.1E+02 0.0038 20.1 7.8 51 29-82 78-130 (286)
110 1ek6_A UDP-galactose 4-epimera 31.0 1.2E+02 0.0042 20.4 6.9 44 11-54 81-129 (348)
111 1o5x_A TIM, triosephosphate is 30.9 42 0.0014 23.2 3.1 31 51-83 161-194 (248)
112 3rft_A Uronate dehydrogenase; 30.8 1.1E+02 0.0039 20.0 7.3 43 11-55 64-109 (267)
113 2dsy_A Hypothetical protein TT 30.7 51 0.0017 18.8 3.0 37 46-82 25-62 (87)
114 1smk_A Malate dehydrogenase, g 30.3 1.4E+02 0.0048 20.8 7.2 64 11-80 76-142 (326)
115 2x7v_A Probable endonuclease 4 30.1 1.2E+02 0.004 19.9 9.2 60 30-91 84-143 (287)
116 3ius_A Uncharacterized conserv 30.1 58 0.002 21.4 3.7 36 11-54 63-100 (286)
117 1t7l_A 5-methyltetrahydroptero 29.5 2E+02 0.0069 23.2 7.1 65 30-95 584-653 (766)
118 1t1u_A Choline O-acetyltransfe 29.3 46 0.0016 26.1 3.4 49 30-78 383-434 (639)
119 3qvo_A NMRA family protein; st 28.8 1.2E+02 0.004 19.5 5.0 34 12-54 89-122 (236)
120 1r6d_A TDP-glucose-4,6-dehydra 28.7 65 0.0022 21.8 3.8 44 11-54 76-124 (337)
121 1u1j_A 5-methyltetrahydroptero 28.6 2.2E+02 0.0076 22.6 7.7 58 30-95 181-244 (765)
122 2deb_A CPT II, carnitine O-pal 28.6 49 0.0017 26.0 3.4 49 30-78 419-470 (653)
123 3nzo_A UDP-N-acetylglucosamine 28.4 1.6E+02 0.0054 20.9 10.0 65 11-77 112-185 (399)
124 3eyi_A Z-DNA-binding protein 1 28.0 35 0.0012 19.3 1.9 33 17-51 1-38 (72)
125 3qxb_A Putative xylose isomera 28.0 1.4E+02 0.0048 20.1 5.6 26 31-56 110-135 (316)
126 3s6d_A Putative triosephosphat 27.2 1.7E+02 0.0059 20.9 8.2 67 14-82 175-251 (310)
127 1h7n_A 5-aminolaevulinic acid 27.1 64 0.0022 23.6 3.6 46 37-82 71-124 (342)
128 4dqv_A Probable peptide synthe 26.9 1E+02 0.0034 22.5 4.8 43 12-54 168-211 (478)
129 2xz8_A Peptidoglycan-recogniti 26.8 1.2E+02 0.004 19.3 4.5 29 48-83 97-125 (150)
130 1o6z_A MDH, malate dehydrogena 26.5 1.6E+02 0.0055 20.3 7.7 43 12-54 71-116 (303)
131 3kws_A Putative sugar isomeras 26.3 1.4E+02 0.0049 19.6 7.2 52 30-82 99-153 (287)
132 1sb8_A WBPP; epimerase, 4-epim 26.2 1.6E+02 0.0053 20.0 6.0 44 11-54 102-150 (352)
133 3m9y_A Triosephosphate isomera 26.2 25 0.00085 24.5 1.3 31 51-83 166-199 (254)
134 2zcu_A Uncharacterized oxidore 26.1 57 0.0019 21.4 3.1 37 12-55 66-102 (286)
135 1b8p_A Protein (malate dehydro 25.9 1.3E+02 0.0045 20.9 5.1 40 11-50 83-126 (329)
136 1hye_A L-lactate/malate dehydr 25.3 1.7E+02 0.0058 20.2 7.3 55 12-73 75-132 (313)
137 3u0h_A Xylose isomerase domain 25.1 1.5E+02 0.005 19.3 7.3 46 35-82 84-129 (281)
138 2phj_A 5'-nucleotidase SURE; S 24.9 1.6E+02 0.0054 20.3 5.2 51 31-83 102-152 (251)
139 2yut_A Putative short-chain ox 24.8 89 0.003 19.3 3.7 12 11-22 66-77 (207)
140 3vni_A Xylose isomerase domain 24.4 1.6E+02 0.0053 19.4 7.1 52 30-82 83-139 (294)
141 2rbg_A Putative uncharacterize 24.2 1.3E+02 0.0046 18.6 5.2 49 30-82 14-62 (126)
142 2pzm_A Putative nucleotide sug 24.1 1.4E+02 0.0047 20.2 4.9 43 11-54 88-133 (330)
143 4h62_V Mediator of RNA polymer 22.9 68 0.0023 14.7 2.8 15 58-72 3-17 (31)
144 2x4g_A Nucleoside-diphosphate- 22.8 1.8E+02 0.006 19.5 9.1 44 11-54 77-123 (342)
145 2z1m_A GDP-D-mannose dehydrata 22.6 72 0.0025 21.4 3.1 43 12-54 76-124 (345)
146 1muw_A Xylose isomerase; atomi 22.4 2.1E+02 0.0071 20.2 6.0 49 31-82 112-166 (386)
147 3vps_A TUNA, NAD-dependent epi 22.2 1.7E+02 0.006 19.2 9.5 43 11-54 69-116 (321)
148 2kzq_A Envelope glycoprotein E 21.9 18 0.0006 17.8 -0.1 12 53-64 2-13 (36)
149 2qul_A D-tagatose 3-epimerase; 21.9 1.7E+02 0.0059 19.0 5.6 52 31-82 84-140 (290)
150 3ajr_A NDP-sugar epimerase; L- 21.6 1.8E+02 0.0062 19.2 6.7 44 11-54 62-109 (317)
151 3k6q_A Putative ligand binding 21.5 91 0.0031 19.8 3.1 38 45-82 59-96 (139)
152 4gac_A Alcohol dehydrogenase [ 21.0 69 0.0024 22.1 2.8 25 53-77 12-36 (324)
153 3oh8_A Nucleoside-diphosphate 20.6 2E+02 0.0067 21.2 5.3 44 11-54 201-251 (516)
154 2zqe_A MUTS2 protein; alpha/be 20.5 1.3E+02 0.0043 16.9 6.7 47 31-88 15-62 (83)
155 2yxo_A Histidinol phosphatase; 20.3 1.5E+02 0.005 19.4 4.2 21 39-59 20-40 (267)
156 1pv8_A Delta-aminolevulinic ac 20.0 92 0.0031 22.6 3.2 47 37-83 61-114 (330)
No 1
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=200.64 Aligned_cols=95 Identities=24% Similarity=0.429 Sum_probs=86.0
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
||++|++|+|+||||||+|||.|+.+. ++.+.|++||++||++|++++++|||||+||||++|||++++|++|++++++
T Consensus 100 ~a~iT~g~~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~ 179 (221)
T 3q71_A 100 TVLKTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFK 179 (221)
T ss_dssp CEEEEECTTSSSSEEEEECCCCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCCCEEEEeCCCCCcCCCchHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999998865 3568999999999999999999999999999999999999999999999999
Q ss_pred HHhcC--CceEEEEEeee
Q 034374 80 FANDF--KEVSHDKFCLM 95 (96)
Q Consensus 80 ~~~~~--~~v~~Vi~~~~ 95 (96)
|+++. ..++.|.|++|
T Consensus 180 fl~~~~~~~l~~V~fv~f 197 (221)
T 3q71_A 180 FSSKNQLKTLQEVHFLLH 197 (221)
T ss_dssp HHHHCCCSSCCEEEEEEC
T ss_pred HHHHcCCCCCCEEEEEEe
Confidence 99865 34566666655
No 2
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=100.00 E-value=2.1e-33 Score=191.92 Aligned_cols=95 Identities=38% Similarity=0.485 Sum_probs=87.1
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
||++|++|+|+||||||+|||.|+++. ++.+.|++||+++|++|++++++|||||+||||++|||++++|++|++++++
T Consensus 64 ~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~ 143 (184)
T 1spv_A 64 HAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSE 143 (184)
T ss_dssp CEEEECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHH
T ss_pred CEEEeeCCCCCCCEEEEEcCCcccCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999998765 5678999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEEEeee
Q 034374 80 FANDFKEVSHDKFCLM 95 (96)
Q Consensus 80 ~~~~~~~v~~Vi~~~~ 95 (96)
|+++.+.++.|.|++|
T Consensus 144 ~l~~~~~~~~V~~v~~ 159 (184)
T 1spv_A 144 FITRHALPEQVYFVCY 159 (184)
T ss_dssp HHHHCCSSSEEEEEES
T ss_pred HHHhCCCCCEEEEEEC
Confidence 9987666666666665
No 3
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=100.00 E-value=4e-33 Score=194.54 Aligned_cols=95 Identities=27% Similarity=0.287 Sum_probs=84.9
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 78 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~ 78 (96)
||++|++|+|+||||||+|||.|+.+. ++.+.|++||+++|++|++++++|||||+||||++|||++++|++|+++++
T Consensus 98 ~a~iT~~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~ 177 (214)
T 3q6z_A 98 NATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIK 177 (214)
T ss_dssp CEEEEECTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999998765 246899999999999999999999999999999999999999999999999
Q ss_pred HHHhcC---CceEEEEEeee
Q 034374 79 EFANDF---KEVSHDKFCLM 95 (96)
Q Consensus 79 ~~~~~~---~~v~~Vi~~~~ 95 (96)
+|+++. +.++.|.|++|
T Consensus 178 ~fl~~~~~~~~l~~V~fv~~ 197 (214)
T 3q6z_A 178 ENFQFKKDGHCLKEIYLVDV 197 (214)
T ss_dssp HHTSSCC--CCCCEEEEEES
T ss_pred HHHHhcCCCCCCCEEEEEeC
Confidence 999765 34555555554
No 4
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=189.07 Aligned_cols=94 Identities=23% Similarity=0.399 Sum_probs=84.4
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
||++|++|+|+||||||+|||.|+.. ++.+.|++||+++|++|++++++|||||+||||++|||++++|++|++++++|
T Consensus 83 ~a~iT~~~~L~~k~VIH~vgP~~~~~-~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~ 161 (193)
T 2xd7_A 83 EAAVSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAH 161 (193)
T ss_dssp CEEEEECTTSSSSEEEEEECCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCCEEEEECCCcCCCc-chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999754 67889999999999999999999999999999999999999999999999999
Q ss_pred HhcC--CceEEEEEeee
Q 034374 81 ANDF--KEVSHDKFCLM 95 (96)
Q Consensus 81 ~~~~--~~v~~Vi~~~~ 95 (96)
+++. ..++.|.|++|
T Consensus 162 l~~~~~~~l~~V~fv~~ 178 (193)
T 2xd7_A 162 FDDSSASSLKNVYFLLF 178 (193)
T ss_dssp HHHCSSCCCCEEEEEEC
T ss_pred HHhcCCCCCCEEEEEEC
Confidence 9763 24555666555
No 5
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=100.00 E-value=1.9e-32 Score=188.43 Aligned_cols=94 Identities=27% Similarity=0.488 Sum_probs=84.8
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
||++|++|+|+||||||+|||.|+. ..+.+.|++||+++|++|++++++|||||+||||++|||++++|++|++++++|
T Consensus 80 ~a~iT~~~~L~~k~VIH~vgP~~~~-~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~ 158 (193)
T 1yd9_A 80 GAAVSAGHGLPAKFVIHCNSPVWGS-DKCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSY 158 (193)
T ss_dssp CEEEEECTTSSSSEEEEECCCCTTS-TTHHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCEEEEeCCCCcCC-cchHHHHHHHHHHHHHHHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999964 356789999999999999999999999999999999999999999999999999
Q ss_pred HhcC--CceEEEEEeee
Q 034374 81 ANDF--KEVSHDKFCLM 95 (96)
Q Consensus 81 ~~~~--~~v~~Vi~~~~ 95 (96)
+++. ..++.|.|++|
T Consensus 159 l~~~~~~~l~~V~fv~~ 175 (193)
T 1yd9_A 159 FVSTMSSSIKTVYFVLF 175 (193)
T ss_dssp HTTCTTCCCCEEEEECC
T ss_pred HHhcCCCCcCEEEEEEC
Confidence 9763 34566666665
No 6
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=99.98 E-value=2.4e-32 Score=192.85 Aligned_cols=95 Identities=35% Similarity=0.562 Sum_probs=85.9
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 78 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~ 78 (96)
||++|++|+|+||||||+|||.|+++. ++.+.|++||+++|++|++++++|||||+||||++|||++++|++|+++++
T Consensus 119 ~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~ 198 (235)
T 2x47_A 119 KAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLR 198 (235)
T ss_dssp CEEEEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHH
T ss_pred ceEEecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999997643 467899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCc-eEEEEEeee
Q 034374 79 EFANDFKE-VSHDKFCLM 95 (96)
Q Consensus 79 ~~~~~~~~-v~~Vi~~~~ 95 (96)
+|++..+. ++.|+||+|
T Consensus 199 ~fl~~~~~~l~~V~fv~f 216 (235)
T 2x47_A 199 EWLEQHKDKVDRLIICVF 216 (235)
T ss_dssp HHHHHHGGGCSEEEEEEC
T ss_pred HHHHhCCCCCCeEEEEEC
Confidence 99986543 666777766
No 7
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=99.97 E-value=2.8e-31 Score=181.46 Aligned_cols=86 Identities=23% Similarity=0.319 Sum_probs=79.3
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
||++|++|+|+||||||+|||.| |++||+++|++|++++++|||||+||||++|||++++|++|++++++|
T Consensus 79 ~a~iT~~~~L~~k~VIH~vgP~~---------L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~f 149 (183)
T 4abl_A 79 DYIITGGGFLRCKNIIHVIGGND---------VKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDF 149 (183)
T ss_dssp SEEEEECTTSBSSEEEEEETTSC---------HHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHH
T ss_pred ceEEecCCCCCCCEEEEeCcHHH---------HHHHHHHHHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHH
Confidence 68999999999999999999976 999999999999999999999999999999999999999999999999
Q ss_pred HhcCC--ceEEEEEeee
Q 034374 81 ANDFK--EVSHDKFCLM 95 (96)
Q Consensus 81 ~~~~~--~v~~Vi~~~~ 95 (96)
+++.+ .++.|.|++|
T Consensus 150 l~~~~~~~l~~V~fv~f 166 (183)
T 4abl_A 150 VQKGSAQSVKKVKVVIF 166 (183)
T ss_dssp HHTTCCSSCCEEEEEES
T ss_pred HHhcCCCCCCEEEEEEC
Confidence 98753 5666666665
No 8
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=99.97 E-value=1.5e-30 Score=173.86 Aligned_cols=89 Identities=24% Similarity=0.271 Sum_probs=81.7
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
|+++|++|+|+||||||++||.|+ ..+.+.|++||+++|++|++++++|||||+||||++|||+++++++|++++++|
T Consensus 59 ~a~it~~~~L~~~~Vih~vgp~~~--~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~ 136 (159)
T 2dx6_A 59 EAAVTGAGNLPVRYVIHAAVLGDE--PASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA 136 (159)
T ss_dssp CEEEEECTTSSSSEEEEEEEESSS--CCCHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS
T ss_pred cEEEecCCCCCCCEEEEEeCCCCC--CchHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc
Confidence 689999999999999999999997 346889999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEEE
Q 034374 81 ANDFKEVSHDKF 92 (96)
Q Consensus 81 ~~~~~~v~~Vi~ 92 (96)
+++++|++|+|
T Consensus 137 -~~~~~V~~v~~ 147 (159)
T 2dx6_A 137 -PDTLEVTLYGY 147 (159)
T ss_dssp -CTTCEEEEEES
T ss_pred -CCCCEEEEEEC
Confidence 55566666665
No 9
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=99.96 E-value=2e-29 Score=174.17 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=78.2
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
||++|++|+|+||||||++||. .|++||+++|++|++++++|||||+||||++|||++++|++|++++++|
T Consensus 90 ~a~iT~g~~L~~k~VIH~vgp~---------~L~~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~~f 160 (199)
T 3kh6_A 90 DFIITPGGCLKCKIIIHVPGGK---------DVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDF 160 (199)
T ss_dssp SSEEEECTTSSSSEEEEEETTS---------CHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCCEEEEeCCCH---------HHHHHHHHHHHHHHHcCCCEEeecccccCCCCcCHHHHHHHHHHHHHHH
Confidence 6899999999999999999994 4999999999999999999999999999999999999999999999999
Q ss_pred HhcCC--ceEEEEEeee
Q 034374 81 ANDFK--EVSHDKFCLM 95 (96)
Q Consensus 81 ~~~~~--~v~~Vi~~~~ 95 (96)
+++.+ .++.|.|++|
T Consensus 161 l~~~~~~~l~~V~fv~f 177 (199)
T 3kh6_A 161 SSQHSTPSLKTVKVVIF 177 (199)
T ss_dssp HHHCSSCSCCEEEEEES
T ss_pred HHhcCCCCCCEEEEEEC
Confidence 98653 4556666665
No 10
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=99.96 E-value=2.5e-30 Score=174.75 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=76.3
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 78 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~ 78 (96)
||++|+++ ||||||+|||.|+++. ++.++|++||+++|++|++++++|||||+||||++|||++++|+ ++++++
T Consensus 62 ~a~iT~~~---~k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~ 137 (168)
T 3gpg_A 62 TAKTVMCG---TYPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLF 137 (168)
T ss_dssp CEEEEEET---TEEEEEECCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHH
T ss_pred CEEEecCC---CCEEEEeCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHH
Confidence 68899995 9999999999998876 23579999999999999999999999999999999999999999 889999
Q ss_pred HHHhc-CCceEEEEE
Q 034374 79 EFAND-FKEVSHDKF 92 (96)
Q Consensus 79 ~~~~~-~~~v~~Vi~ 92 (96)
+|+++ +.+|.+|+|
T Consensus 138 ~~~~~~~~~V~fv~f 152 (168)
T 3gpg_A 138 TAMDSTDADVVIYCR 152 (168)
T ss_dssp HHHTTCCSEEEEEES
T ss_pred HhccCCCCEEEEEEC
Confidence 99876 345555544
No 11
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=99.96 E-value=9.2e-30 Score=177.11 Aligned_cols=91 Identities=23% Similarity=0.347 Sum_probs=82.2
Q ss_pred CceeccCCCCCC---ceEEEecCC----CcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374 1 MLKECRGFKLPV---SHVIHTVGP----VFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (96)
Q Consensus 1 ea~~T~ag~L~~---k~IiH~v~P----~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~ 73 (96)
||++|++|+|+| |||||+||| .|++ ++.+.|++||+++|++|++++++|||||+||||++|||++++|++|
T Consensus 88 ~a~iT~~~~L~~~g~k~VIH~vgP~~~~~~~~--~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~ 165 (211)
T 1vhu_A 88 EVVVTPAMNLEERGIKYVFHTVGPICSGMWSE--ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETF 165 (211)
T ss_dssp CCEEEECGGGGGGTCCEEEEEECCCCTTCCCH--HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHH
T ss_pred cEEEEECCCCCccCcCEEEEecCCccccccCc--chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHH
Confidence 689999999999 999999999 9953 5678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEEeee
Q 034374 74 ISTVKEFANDFKEVSHDKFCLM 95 (96)
Q Consensus 74 ~~~i~~~~~~~~~v~~Vi~~~~ 95 (96)
++++++|++ .+ ++.|.|++|
T Consensus 166 ~~~v~~~l~-~~-l~~V~~v~~ 185 (211)
T 1vhu_A 166 LEAVKNFKG-SA-VKEVALVIY 185 (211)
T ss_dssp HHHHHHCCC-SS-CCEEEEEES
T ss_pred HHHHHHHHh-CC-CCEEEEEEC
Confidence 999999994 33 556666665
No 12
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=99.96 E-value=3.9e-29 Score=168.92 Aligned_cols=90 Identities=22% Similarity=0.278 Sum_probs=76.7
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 78 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~ 78 (96)
+|++|+++ ||||||+|||.|+++. ++.++|++||+++|++|++++++|||||+||||++|||++++|+.+.+.+.
T Consensus 56 ~a~iT~~~---~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~~~l~ 132 (168)
T 3gqe_A 56 KARLVKGA---AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLNHLLT 132 (168)
T ss_dssp CEEEECCT---TCCEEEEECCCTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHHHHHH
T ss_pred cEEEEcCC---CCEEEEcCCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH
Confidence 58899984 9999999999999875 235799999999999999999999999999999999999999997766665
Q ss_pred HHHhcCCceEEEEEe
Q 034374 79 EFANDFKEVSHDKFC 93 (96)
Q Consensus 79 ~~~~~~~~v~~Vi~~ 93 (96)
.+-++..+|.+|+|+
T Consensus 133 ~~~~~~~~V~iv~fd 147 (168)
T 3gqe_A 133 ALDTTDADVAIYCRD 147 (168)
T ss_dssp HHTTSCCEEEEEESC
T ss_pred HCCCCCCeEEEEEcC
Confidence 554555667776654
No 13
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=99.95 E-value=5.8e-28 Score=164.18 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=75.4
Q ss_pred ceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 2 LKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 2 a~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
|++|+|++|++++|||+|||.|... +++++|++||+++|+ ++++|||||+||||++|||++++|++|++++++
T Consensus 81 a~iT~G~~l~t~~VIHtVGP~~~~~-~~~~~L~~~y~~~L~----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~-- 153 (176)
T 3ejf_A 81 RLVTPSFVKGIQCVNNVVGPRHGDN-NLHEKLVAAYKNVLV----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG-- 153 (176)
T ss_dssp EEEECCCSTTEEEEEEECCCCTTCS-CHHHHHHHHHHTTCC----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT--
T ss_pred eeecccccccCCEEEEeCCCCCCCc-cHHHHHHHHHHHHHH----cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh--
Confidence 6899999999999999999999643 577899999999998 999999999999999999999999999999983
Q ss_pred hcCCceEEEEEe
Q 034374 82 NDFKEVSHDKFC 93 (96)
Q Consensus 82 ~~~~~v~~Vi~~ 93 (96)
.++++++|+
T Consensus 154 ---~~v~v~~~~ 162 (176)
T 3ejf_A 154 ---CTIRVLLFS 162 (176)
T ss_dssp ---CCCEEEEEE
T ss_pred ---cceEEEEEc
Confidence 568888886
No 14
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=99.95 E-value=1.8e-28 Score=165.62 Aligned_cols=81 Identities=20% Similarity=0.184 Sum_probs=72.0
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
||++|+|| |+|+||||+|||.|.. .++.++|++||+++|++ .+|||||+||||++|||++++|++|++++++
T Consensus 75 ~a~iT~g~-l~~~~VIHtVgP~~~~-~~~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~- 146 (168)
T 3eti_A 75 NAVLFENV-LEHLSVMNAVGPRNGD-SRVEGKLCNVYKAIAKC-----DGKILTPLISVGIFKVKLEVSLQCLLKTVTD- 146 (168)
T ss_dssp EEEEEEEE-ETTEEEEEEECCCTTS-TTHHHHHHHHHHHHHTS-----CSCEEECCTTBSTTCBCHHHHHHHHHHHCCS-
T ss_pred CEEEecCC-CCccEEEEecCCCCCc-chHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc-
Confidence 58899999 9999999999999965 35688999999999985 3899999999999999999999999999987
Q ss_pred HhcCCceEEEEEe
Q 034374 81 ANDFKEVSHDKFC 93 (96)
Q Consensus 81 ~~~~~~v~~Vi~~ 93 (96)
++|++|+|.
T Consensus 147 ----~~V~~v~f~ 155 (168)
T 3eti_A 147 ----RDLNVFVYT 155 (168)
T ss_dssp ----SCEEEEECC
T ss_pred ----CeEEEEEcC
Confidence 566666653
No 15
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=99.94 E-value=9.4e-29 Score=178.46 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=82.0
Q ss_pred CceeccCC----------CCCCceEEEecCCCcCCCC---------CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCC
Q 034374 1 MLKECRGF----------KLPVSHVIHTVGPVFNFHC---------NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGV 61 (96)
Q Consensus 1 ea~~T~ag----------~L~~k~IiH~v~P~~~~~~---------~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~ 61 (96)
+|++|++| +|+||||||+|||.|.++. .+.+.|++||+++|++| +++++|||||+||||+
T Consensus 119 ~a~iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv 197 (284)
T 1njr_A 119 SATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGY 197 (284)
T ss_dssp CCEEEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCST
T ss_pred eEEEEECCcccccccchhcCCCCEEEEeCCCccCCCCCcccccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccC
Confidence 68899999 9999999999999998652 14589999999999999 9999999999999999
Q ss_pred CCcChHHHHHHHHHHHHHHHhcCC---ce-EEEEEeee
Q 034374 62 SQYPPDEAATIAISTVKEFANDFK---EV-SHDKFCLM 95 (96)
Q Consensus 62 ~g~p~~~~a~~~~~~i~~~~~~~~---~v-~~Vi~~~~ 95 (96)
+|||++++|++|++++++|+++.+ .+ +.|+||+|
T Consensus 198 ~G~P~~~aA~i~~~av~~f~~~~~~s~~~~~~vi~~~~ 235 (284)
T 1njr_A 198 AGVPPIISCKSMAFALRLYMAGDHISKELKNVLIMYYL 235 (284)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCcccccceEEEEEEC
Confidence 999999999999999999998654 32 44555543
No 16
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=99.93 E-value=2.1e-26 Score=177.31 Aligned_cols=89 Identities=21% Similarity=0.310 Sum_probs=78.9
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCC-c-HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCN-P-EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 78 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~-~-~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~ 78 (96)
||++|+++ +|||||+|||.|+++.+ + .++|++||+++|++|.+++++|||||+||||+||||++ .++++++++.
T Consensus 396 ~AkIT~g~---aKyIIHtVGPvw~~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~ 471 (670)
T 4gua_A 396 TARMTVCL---GKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLT 471 (670)
T ss_dssp CEEEEEET---TEEEEEECCCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHH
T ss_pred eEEEecCC---CceEEEcCCCCccCCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHH
Confidence 68999998 59999999999998873 3 36899999999999999999999999999999999987 5899999999
Q ss_pred HHHhcCC-ceEEEEEe
Q 034374 79 EFANDFK-EVSHDKFC 93 (96)
Q Consensus 79 ~~~~~~~-~v~~Vi~~ 93 (96)
+|+++.. +|.+|.|+
T Consensus 472 ~fL~~~D~dV~IvcfD 487 (670)
T 4gua_A 472 TALDRTDADVTIYCLD 487 (670)
T ss_dssp HHHTTSSCEEEEECSC
T ss_pred HHHhccCCEEEEEEec
Confidence 9998764 56666553
No 17
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=99.92 E-value=7.6e-26 Score=154.43 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=68.4
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
||++|++|+|+ +||||+|||.|+.+ ++.+.|++||+++ ++++|||||+||||++|||++++|+++++++++
T Consensus 85 ~a~iT~~~~L~-~~VIH~vgP~~~~~-~~~~~L~~~y~~~------~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~- 155 (182)
T 2acf_A 85 GSCLLSGHNLA-KKCLHVVGPNLNAG-EDIQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT- 155 (182)
T ss_dssp CEEEEECTTTC-SEEEEECCCCGGGT-CCTTHHHHHHHGG------GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS-
T ss_pred cEEEeeCCCCC-ceEEEECCCCCCCC-chHHHHHHHHHHh------cCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC-
Confidence 68999999996 89999999999765 3567999999985 799999999999999999999999999999886
Q ss_pred HhcCCceEEEEE
Q 034374 81 ANDFKEVSHDKF 92 (96)
Q Consensus 81 ~~~~~~v~~Vi~ 92 (96)
+|++|+|
T Consensus 156 -----~V~~v~~ 162 (182)
T 2acf_A 156 -----QVYIAVN 162 (182)
T ss_dssp -----EEEEEES
T ss_pred -----cEEEEEC
Confidence 5555544
No 18
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=99.92 E-value=1.5e-25 Score=154.14 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=68.5
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
||++|++|+| ||||+|||.|+. ++.++|++||+++|+. .+|||||+||||++|||++++|+++++++++
T Consensus 103 ~a~iT~~~~L---~VIHtVGP~~~~--~~~~~L~~~y~~~L~~-----~~SIAfPaIstGi~G~P~~~aa~ial~~v~~- 171 (193)
T 3ejg_A 103 TGVMVECDSL---RIFNVVGPRKGK--HERDLLIKAYNTINNE-----QGTPLTPILSCGIFGIKLETSLEVLLDVCNT- 171 (193)
T ss_dssp CEEEEEETTE---EEEEEECCCSST--THHHHHHHHHHHHHHS-----SSCEEECCTTCGGGCCCHHHHHHHHHHHCCS-
T ss_pred CEEEecCCCe---eEEEecCCCCCc--hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc-
Confidence 6899999999 999999999965 5788999999999984 2799999999999999999999999999988
Q ss_pred HhcCCceEEEEE
Q 034374 81 ANDFKEVSHDKF 92 (96)
Q Consensus 81 ~~~~~~v~~Vi~ 92 (96)
.+|++|+|
T Consensus 172 ----~~V~fv~f 179 (193)
T 3ejg_A 172 ----KEVKVFVY 179 (193)
T ss_dssp ----SCEEEEEC
T ss_pred ----CeEEEEEc
Confidence 35666655
No 19
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=99.89 E-value=4.5e-24 Score=144.65 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=68.4
Q ss_pred CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
||++|++|+| ||||+|||.|... +.+.|++||+++|++ + +|||||+||||++|||++++|+++++++++
T Consensus 82 ~a~iT~~~~l---~VIH~vgP~~~~~--~~~~L~~~y~~~L~~---~--~SIAfP~IstG~~g~p~~~aa~i~~~~v~~- 150 (174)
T 2vri_A 82 AGVMLECEKF---NVFNVVGPRTGKH--EHSLLVEAYNSILFE---N--GIPLMPLLSCGIFGVRIENSLKALFSCDIN- 150 (174)
T ss_dssp CEEEEECSSC---EEEEEECCCSSTT--HHHHHHHHHHHHHHS---S--SCEEEECSSCGGGCCCHHHHHHHHHTSCCC-
T ss_pred eEEEEECCCC---EEEEEcCCCCCcc--hHHHHHHHHHHHHhh---C--CcEEeCccccCCCCCCHHHHHHHHHHHHhh-
Confidence 6899999998 9999999999642 778999999999985 3 499999999999999999999999998876
Q ss_pred HhcCCceEEEEEe
Q 034374 81 ANDFKEVSHDKFC 93 (96)
Q Consensus 81 ~~~~~~v~~Vi~~ 93 (96)
++|++|+|+
T Consensus 151 ----~~V~~v~f~ 159 (174)
T 2vri_A 151 ----KPLQVFVYS 159 (174)
T ss_dssp ----SCEEEEECS
T ss_pred ----CcEEEEEcC
Confidence 567777663
No 20
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.84 E-value=8.9e-21 Score=125.39 Aligned_cols=84 Identities=8% Similarity=0.118 Sum_probs=72.9
Q ss_pred CceeccCCCCCCceEEEecCCC-cCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPV-FNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~-~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
|+++|+++ ++||||++||. |.+ ..+.+.|++||++++++|++++++|||||+||||++|+|.+++++++.+++.+
T Consensus 64 ~a~it~~~---~~~Vih~v~~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~~ 139 (149)
T 2eee_A 64 EVAVLKRD---GRYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 139 (149)
T ss_dssp CEEEEESS---SSEEEEEEEESSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHTT
T ss_pred cEEEEEcC---CCEEEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhcc
Confidence 57788885 69999999998 654 45678999999999999999999999999999999999999999998776553
Q ss_pred HHhcCCceEEEEEe
Q 034374 80 FANDFKEVSHDKFC 93 (96)
Q Consensus 80 ~~~~~~~v~~Vi~~ 93 (96)
.++.+++|+
T Consensus 140 -----~~i~v~Vy~ 148 (149)
T 2eee_A 140 -----TDIKITVYT 148 (149)
T ss_dssp -----CCCEEEEEC
T ss_pred -----CCceEEEEe
Confidence 258888885
No 21
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.84 E-value=1.2e-20 Score=126.22 Aligned_cols=84 Identities=8% Similarity=0.109 Sum_probs=73.1
Q ss_pred CceeccCCCCCCceEEEecCCC-cCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPV-FNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~-~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
++++|+++ .+||||++||. |.+ ..+.+.|++||+++++.|++++++|||||+||||++|+|.+++++++.+++.+
T Consensus 75 ~a~it~~~---~~~Vih~vg~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~~~~~~ 150 (160)
T 2jyc_A 75 EVAVLKRD---GRYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 150 (160)
T ss_dssp CEEEEEET---TEEEEEEECSSSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHHHHHTT
T ss_pred cEEEEecC---CcEEEEEecCCCCCC-CChHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 57788875 69999999998 654 45688999999999999999999999999999999999999999998776654
Q ss_pred HHhcCCceEEEEEe
Q 034374 80 FANDFKEVSHDKFC 93 (96)
Q Consensus 80 ~~~~~~~v~~Vi~~ 93 (96)
. ++.+++|+
T Consensus 151 ~-----~i~v~Vy~ 159 (160)
T 2jyc_A 151 T-----DIKITVYT 159 (160)
T ss_dssp S-----CCEEEEEE
T ss_pred C-----CCeEEEEe
Confidence 2 58888875
No 22
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.72 E-value=2.3e-17 Score=109.78 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=68.4
Q ss_pred CceeccCCCCCCceEEEecCCC-cCCCC-C----cHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHH
Q 034374 1 MLKECRGFKLPVSHVIHTVGPV-FNFHC-N----PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAI 74 (96)
Q Consensus 1 ea~~T~ag~L~~k~IiH~v~P~-~~~~~-~----~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~ 74 (96)
|+.+|+++ +.+||||++||. |.++. . +.+.|++||+++++.|++++. |||||.||||++|+|.+++++++.
T Consensus 67 ~~~i~~~~--~~~~Vi~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~ 143 (158)
T 2fg1_A 67 AVQFVNVE--NKLYVANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIK 143 (158)
T ss_dssp CEEEEEEE--TTEEEEEEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHH
T ss_pred cEEEEecC--CCeEEEEEEEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHH
Confidence 57788873 239999999998 76443 2 688999999999999999997 999999999999999999998775
Q ss_pred HHHHHHHhcCCceEEEEEe
Q 034374 75 STVKEFANDFKEVSHDKFC 93 (96)
Q Consensus 75 ~~i~~~~~~~~~v~~Vi~~ 93 (96)
+.+ .++ ++.+++|.
T Consensus 144 ~~l----~~~-~i~v~vy~ 157 (158)
T 2fg1_A 144 EEL----ITK-EIAVTVYD 157 (158)
T ss_dssp HHT----GGG-TCCEEEEE
T ss_pred HHh----ccC-CcEEEEec
Confidence 544 433 55666653
No 23
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=99.27 E-value=8.4e-12 Score=89.68 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=64.6
Q ss_pred EEEecCCCcCCCC------CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH---HHhcCC
Q 034374 15 VIHTVGPVFNFHC------NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE---FANDFK 85 (96)
Q Consensus 15 IiH~v~P~~~~~~------~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~---~~~~~~ 85 (96)
||.++.|+|.... +..+.|++.++++|..|.++|.++|++||+|||+||+|++++|+++.+.+.+ |...++
T Consensus 172 vit~aApn~~~~~~~~~~~~~~~~l~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~~vL~~~~~f~~~f~ 251 (277)
T 3sig_A 172 FLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLDGGPFAGRFA 251 (277)
T ss_dssp EEEECCCCHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHSTTCTTTTTCS
T ss_pred EEEecCCCCccccCccchHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHHHHHhhcchhcCCce
Confidence 8899999884211 2357899999999999999999999999999999999999999999999984 555555
Q ss_pred ceEEEEE
Q 034374 86 EVSHDKF 92 (96)
Q Consensus 86 ~v~~Vi~ 92 (96)
+|.|.++
T Consensus 252 ~VvFAv~ 258 (277)
T 3sig_A 252 HVVFAVW 258 (277)
T ss_dssp EEEEECC
T ss_pred EEEEEEe
Confidence 5555554
No 24
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=91.28 E-value=1.7 Score=28.24 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=26.2
Q ss_pred CceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEec
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfP 55 (96)
++.|||++|+.|.... ..+.-.....+.++.+.+.+.+.+-+-
T Consensus 68 ~d~vi~~a~~~~~~~~-~~~~n~~~~~~l~~~~~~~~~~~~v~~ 110 (227)
T 3dhn_A 68 ADAVISAFNPGWNNPD-IYDETIKVYLTIIDGVKKAGVNRFLMV 110 (227)
T ss_dssp CSEEEECCCC-------CCSHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCEEEEeCcCCCCChh-HHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 7899999999876532 111223446677888888898877663
No 25
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=86.51 E-value=1.4 Score=30.40 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
.=.+.+++.++.|.+.|++.+++=++||+++.=|++++ +..++-+.+++++
T Consensus 31 ~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev-~~Lm~l~~~~l~~ 81 (227)
T 2vg0_A 31 MGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDEL-AALIEIITDVVEE 81 (227)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHH-HHHHHHHHHHHHH
Confidence 33567888888999999999999999999999999998 5555777777653
No 26
>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*
Probab=82.97 E-value=13 Score=28.40 Aligned_cols=65 Identities=8% Similarity=0.080 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe----c-ccccCCCCcChHHHHHHHHHHHHHHHhcCCc-eE-EEEEee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF----P-AISCGVSQYPPDEAATIAISTVKEFANDFKE-VS-HDKFCL 94 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf----P-aigtG~~g~p~~~~a~~~~~~i~~~~~~~~~-v~-~Vi~~~ 94 (96)
++.++..+...++.+.+.|+.-+=+ | .......|+|.++..+.+.+++.++.+..+. |. .+|+|+
T Consensus 195 ~~~~~~~~~e~l~d~a~dgV~Y~ElR~~f~p~~~~~g~~l~~~~vv~~v~~~~~~~~~~~~~fI~~rlI~~~ 266 (508)
T 3lgd_A 195 APVFRDYVFRSMQEFYEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSD 266 (508)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEEEECCCCCBCTTSCBCCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCceEEEEeecCchHhhccCCCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEEEe
Confidence 5678889999999999999886643 3 3344335799999999999999999887763 33 245554
No 27
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=78.15 E-value=3.5 Score=28.44 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 33 LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 33 L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
=.+.++++++.|.+.|++.+.+=++||.++.=|++++...| +-+.++++
T Consensus 35 G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm-~L~~~~l~ 83 (225)
T 3ugs_B 35 GVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIF-ELLDRCLD 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHH-HHHHHHHH
Confidence 34566778888999999999999999999999998886553 55555553
No 28
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=76.30 E-value=7 Score=24.89 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=29.3
Q ss_pred CCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecc
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPA 56 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPa 56 (96)
.++.|||++|+..... +.-....++.++.+.+.+.+.+-+..
T Consensus 61 ~~d~vi~~ag~~~~~~----~~~~~~~~~l~~a~~~~~~~~~v~~S 102 (221)
T 3ew7_A 61 DQNVVVDAYGISPDEA----EKHVTSLDHLISVLNGTVSPRLLVVG 102 (221)
T ss_dssp TCSEEEECCCSSTTTT----TSHHHHHHHHHHHHCSCCSSEEEEEC
T ss_pred CCCEEEECCcCCcccc----chHHHHHHHHHHHHHhcCCceEEEEe
Confidence 3789999999965321 22345567788888888887777643
No 29
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=74.91 E-value=15 Score=24.18 Aligned_cols=53 Identities=6% Similarity=-0.004 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.+...+.++++++.|.+.|.+.|.++.=.....+.+.++.-+.+.+.+.+..+
T Consensus 78 r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~ 130 (275)
T 3qc0_A 78 REKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLP 130 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 44556788899999999999999887311111234566666666666666554
No 30
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=73.85 E-value=13 Score=26.91 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEe--cccccCCC----------CcChHHHHHHHHHHHHHHHhcCC-ceEEEEEeee
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAF--PAISCGVS----------QYPPDEAATIAISTVKEFANDFK-EVSHDKFCLM 95 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~----------g~p~~~~a~~~~~~i~~~~~~~~-~v~~Vi~~~~ 95 (96)
+.|..+|+.-++...+.|++-|-| |+++.+.. +.++++..+.+++++...++..+ +..+.++.|+
T Consensus 163 ~~la~a~~~ei~~l~~aG~~~IQiDeP~l~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~~~i~~HiC~ 240 (375)
T 1ypx_A 163 NDLATAYQKAIQAFYDAGCRYLQLDDTSWSYLCSDEQREVVRQRGFDPETLQETYKNLINEAIKHKPADMVITMHICR 240 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECHHHHTTSCC--------CCSTTTHHHHHHHHHHHHTTTCCTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCCchhhhhccchhcccccccCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 567778888888888889987766 88886542 34556777888888888888776 4788888885
No 31
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=73.18 E-value=10 Score=26.39 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374 33 LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (96)
Q Consensus 33 L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~ 73 (96)
=.+.+++.++.|.+.|++.+.+=++||.++.=|++++...|
T Consensus 44 G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm 84 (245)
T 2d2r_A 44 GVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLM 84 (245)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHH
Confidence 35678888999999999999999999999999987776554
No 32
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=72.23 E-value=5 Score=28.21 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
..=.+.+++.++.|.+.|++.+.+=++||.++.=|++++...| +-+.++++
T Consensus 51 ~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm-~L~~~~l~ 101 (256)
T 4h8e_A 51 YEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIM-NLPVNFLK 101 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHH-HHHHHHHH
Confidence 3344567788888999999999999999999999998886553 44444443
No 33
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=71.84 E-value=17 Score=23.20 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=30.6
Q ss_pred CCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEec
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfP 55 (96)
.++.|||++|+.|.... .+.-....++.++.+.+.| +.+-+.
T Consensus 62 ~~d~vi~~ag~~~~~~~--~~~n~~~~~~l~~a~~~~~-~~~v~~ 103 (224)
T 3h2s_A 62 SVDAVVDALSVPWGSGR--GYLHLDFATHLVSLLRNSD-TLAVFI 103 (224)
T ss_dssp TCSEEEECCCCCTTSSC--THHHHHHHHHHHHTCTTCC-CEEEEE
T ss_pred cCCEEEECCccCCCcch--hhHHHHHHHHHHHHHHHcC-CcEEEE
Confidence 36899999999876532 2334455688899999999 766664
No 34
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=68.92 E-value=17 Score=26.07 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEe---cccccCCCCcChHHHHHHHHHHHHHHHhcCC
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAF---PAISCGVSQYPPDEAATIAISTVKEFANDFK 85 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAf---PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~ 85 (96)
..+.++......++.+.+.|+.-+=+ |-..++ .|++.++..+.++++++++.+.+.
T Consensus 75 ~~e~~~~~~~~~l~~~~~dgV~y~Eir~~P~~~~~-~gl~~~~~v~~v~~~~~~a~~~~g 133 (343)
T 3rys_A 75 TEQDFTDMTRAYLERAAAGGVRHAEIMMDPQAHTS-RGVALETCVNGVANALATSEEDFG 133 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHT-TTCCHHHHHHHHHHHHTTHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEecHHHhcc-CCCCHHHHHHHHHHHHHHHhhcCc
Confidence 46789999999999999999987633 655553 689999999999999988876654
No 35
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=68.08 E-value=4.7 Score=28.30 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~ 81 (96)
..=.+.+++.++.|.+.|++.+.+=++||.++.=|++++...| +-+.+++
T Consensus 44 ~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm-~L~~~~l 93 (253)
T 3sgv_B 44 KAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALM-ELFVWAL 93 (253)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHH-HHHHTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHH-HHHHHHH
Confidence 3444667788889999999999999999999999998886554 4444444
No 36
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=67.92 E-value=25 Score=23.64 Aligned_cols=60 Identities=8% Similarity=-0.091 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEE
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHD 90 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~V 90 (96)
.+...+.++++++.|.+.|.+.|..|..|. ..+.+.++.-+.+.+.+++..+...+|++.
T Consensus 108 r~~~~~~~~~~i~~A~~lG~~~v~~~~~g~-~~~~~~~~~~~~~~~~l~~l~~~a~~v~l~ 167 (290)
T 2zvr_A 108 RKKAIERVVKHTEVAGMFGALVIIGLVRGR-REGRSYEETEELFIESMKRLLELTEHAKFV 167 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEESGGGCC-CTTSCHHHHHHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCCCC-CCCcCHHHHHHHHHHHHHHHHHHhccCEEE
Confidence 456677889999999999999998553222 224466777777777777776654434443
No 37
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=67.59 E-value=18 Score=25.72 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEE--Ee-cccccCCCCcChHHHHHHHHHHHHHHHhcCC
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYI--AF-PAISCGVSQYPPDEAATIAISTVKEFANDFK 85 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SI--Af-PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~ 85 (96)
.++.++......++.+.+.|+.-+ =| |-..+ ..|++.++..+.+.++++++.+.+.
T Consensus 72 t~ed~~~~a~~~~~~~~~dgV~y~Eir~~P~~~~-~~gl~~~~~v~~v~~~~~~a~~~~g 130 (326)
T 3pao_A 72 TEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTHT-DRGIPFEVVLAGIRAALRDGEKLLG 130 (326)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEECCEECHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEEEChHHhc-cCCCCHHHHHHHHHHHHHHHHhhCc
Confidence 467899999999999999999875 23 65554 4689999999999999999877654
No 38
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...
Probab=65.18 E-value=37 Score=24.64 Aligned_cols=65 Identities=14% Similarity=0.320 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEe---cccccCC-----------CCcChHHHHHHHHHHHHHHHhcCC-ceEEEEEe
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAF---PAISCGV-----------SQYPPDEAATIAISTVKEFANDFK-EVSHDKFC 93 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAf---PaigtG~-----------~g~p~~~~a~~~~~~i~~~~~~~~-~v~~Vi~~ 93 (96)
+.+.+++.....++.+.+.|+.-+=+ |-..+.. .|++.++..+.+++++++..+++. .++ +|+|
T Consensus 72 ~~edl~~~a~e~~ed~a~dgV~Y~Eir~~P~~~~~~~~~~~~~~~~~~gl~~~~vv~~v~~~~~~a~~~~gi~~~-lI~~ 150 (367)
T 3iar_A 72 CREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVALVGQGLQEGERDFGVKAR-SILC 150 (367)
T ss_dssp CHHHHHHHHHHHHHHHHTTTEEEEEEEECGGGGCSSSCSSCGGGCCCCSCCHHHHHHHHHHHHHHHHHHHCCEEE-EEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEecHHHhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEE-EEEE
Confidence 46788888899999999999987644 6665533 489999999999999998876653 333 4444
Q ss_pred e
Q 034374 94 L 94 (96)
Q Consensus 94 ~ 94 (96)
+
T Consensus 151 ~ 151 (367)
T 3iar_A 151 C 151 (367)
T ss_dssp E
T ss_pred e
Confidence 3
No 39
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=64.89 E-value=30 Score=25.21 Aligned_cols=57 Identities=26% Similarity=0.343 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEe---cccccCCCCcChHHHHHHHHHHHHHHHhcCC
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAF---PAISCGVSQYPPDEAATIAISTVKEFANDFK 85 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAf---PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~ 85 (96)
..+.+++.....++.+.+.|+.-+=+ |-..+...|++.+++.+.+++++++..+.+.
T Consensus 90 t~ed~~r~a~e~~ed~a~dgV~Y~Eirf~P~~~~~~~Gl~~~~vv~av~~g~~~a~~~~g 149 (380)
T 4gxw_A 90 RPDDLRRIAYEYLEDAAAHNVRHAEFFWNPTGTVRVSGIPYADAQAAIVTGMRDAARDFG 149 (380)
T ss_dssp SHHHHHHHHHHHHHHHHTTTEEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEEcCHHHhccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35678888889999999999886655 6555566789999999999999998877654
No 40
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=64.70 E-value=13 Score=25.89 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHH
Q 034374 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAA 70 (96)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a 70 (96)
.=.+.+++.++.|.+.|++.+++=++||.++.=|++++.
T Consensus 48 ~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~ 86 (249)
T 1f75_A 48 EGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVN 86 (249)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEC------------C
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHH
Confidence 335678888899999999999999999999999988764
No 41
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=64.64 E-value=8.7 Score=27.34 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374 33 LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (96)
Q Consensus 33 L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~ 73 (96)
=.+.+++.++.|.+.|++.+.+=++||.++.=|++++...|
T Consensus 84 G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm 124 (284)
T 2vg3_A 84 GEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLM 124 (284)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHH
Confidence 34778888999999999999999999999999999876554
No 42
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=64.57 E-value=27 Score=22.91 Aligned_cols=53 Identities=9% Similarity=0.204 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
.+...+.++++++.|.+.|.+.|.+.. +.+..+++.++.-+.+.+.+++..+.
T Consensus 79 ~~~~~~~~~~~i~~a~~lG~~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~l~~~ 131 (278)
T 1i60_A 79 HNEIITEFKGMMETCKTLGVKYVVAVP-LVTEQKIVKEEIKKSSVDVLTELSDI 131 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEC-CBCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEec-CCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345667889999999999999998831 22222467677777777777766553
No 43
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=61.82 E-value=42 Score=24.21 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEEeee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLM 95 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~~~~ 95 (96)
...|..+|+.-++...+.|++-|-| |+++.+ .+...+.+++++...++..+ ....++.||
T Consensus 166 ~~dlA~a~~~ei~~l~~aG~~~IQiDeP~l~~~-----~~~~~~~~v~~~n~~~~~~~-~~~~iHiC~ 227 (357)
T 3rpd_A 166 AWEFAKILNEEAKELEAAGVDIIQFDEPAFNVF-----FDEVNDWGIACLERAIEGLK-CETAVHICY 227 (357)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECGGGGTC-----HHHHHHTHHHHHHHHHTTCC-SEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCcccccc-----HHHHHHHHHHHHHHHHhCCC-CceEEEEec
Confidence 3568889999999999999998887 888752 45666777888888887765 345567774
No 44
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=59.78 E-value=35 Score=22.56 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEE
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDK 91 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi 91 (96)
+.-.+.++++++.|.+.|.+.|.+.. |......+.++.-+.+.+.+++.+..-..|++.+
T Consensus 85 ~~~~~~~~~~i~~A~~lGa~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~l~l 144 (285)
T 1qtw_A 85 EKSRDAFIDEMQRCEQLGLSLLNFHP-GSHLMQISEEDCLARIAESINIALDKTQGVTAVI 144 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECC-CBCTTTSCHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECc-CCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 45566788999999999999997632 2222234677777777777777665434455543
No 45
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Probab=58.53 E-value=41 Score=24.11 Aligned_cols=61 Identities=7% Similarity=0.051 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEE---EecccccCCCCcChHHHHHHHHHHHHHHHhcCC-ceEE
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYI---AFPAISCGVSQYPPDEAATIAISTVKEFANDFK-EVSH 89 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SI---AfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~~-~v~~ 89 (96)
..+.++......++.+.+.|++.+ .=|-......|++.++..+.+++++.+..+..+ .|+.
T Consensus 109 t~ed~~~~a~~~l~e~~~~GV~y~E~r~dp~~~~~~~gl~~~~~~~a~~~~~~~a~~~~~~gi~~ 173 (371)
T 2pgf_A 109 DYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKYNLDIELIHQAIVKGIKEVVELLDHKIHV 173 (371)
T ss_dssp SHHHHHHHHHHHHHHHHHHTEEEEEEEECHHHHHTTTTCCHHHHHHHHHHHHHHHHHHTTTSSEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEECcccccccCCCCHHHHHHHHHHHHHHHHHHccCCCEE
Confidence 356788888899999999999987 224331224678999999999999999887775 5655
No 46
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=57.97 E-value=9.5 Score=26.65 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHH
Q 034374 33 LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 72 (96)
Q Consensus 33 L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~ 72 (96)
=.+.+++.++.|.+.|++.+.+=++||.++.=|++++...
T Consensus 46 G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~L 85 (253)
T 3qas_B 46 GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL 85 (253)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCC-------------
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHH
Confidence 3477888899999999999999999999999898887544
No 47
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=57.60 E-value=39 Score=22.40 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
..+...+.++++++.|.+.|.+.|.+.. | ...+.+.++.-+.+.+.+++..+
T Consensus 87 ~r~~~~~~~~~~i~~A~~lGa~~v~~~~-g-~~~~~~~~~~~~~~~~~l~~l~~ 138 (269)
T 3ngf_A 87 REQEFRDNVDIALHYALALDCRTLHAMS-G-ITEGLDRKACEETFIENFRYAAD 138 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEECCB-C-BCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcc-C-CCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566777889999999999999998842 1 23345667777777777776665
No 48
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=56.81 E-value=42 Score=22.57 Aligned_cols=44 Identities=18% Similarity=0.053 Sum_probs=29.3
Q ss_pred CCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++...... ...+.=-...++.++.|.+.+.+.+-+
T Consensus 62 ~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~ 106 (311)
T 3m2p_A 62 DVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVY 106 (311)
T ss_dssp TCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 57999999998544321 112222344678888888999987766
No 49
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}
Probab=55.51 E-value=9.4 Score=26.61 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhHHhCCCc--EEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 31 DILRSAYKNCLSVGKANNIQ--YIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~--SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+.+.+-++.+|.......++ -||. | +||||.. +..+-++-+...||+++.+
T Consensus 140 ~vv~~Ql~~~l~~~~~~~~~~vvIAYEPvWAIGTG~~--Atpe~aqevh~~IR~~l~~ 195 (250)
T 1yya_A 140 PYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKN--ATPEDAEAMHQAIRKALSE 195 (250)
T ss_dssp HHHHHHHHHHTTTCCCSSGGGCEEEECCGGGSSSSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHcCcEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 34444444455332222233 4565 6 8999854 3444556678899998753
No 50
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=53.88 E-value=49 Score=22.50 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=28.5
Q ss_pred CCceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++.........+.+. ....+.++.|.+.+.+.+-+
T Consensus 77 ~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~ 123 (347)
T 4id9_A 77 GVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVF 123 (347)
T ss_dssp TCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 478999999875433221122222 23567888888899988776
No 51
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=53.87 E-value=50 Score=22.53 Aligned_cols=49 Identities=8% Similarity=0.145 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.+...+.++.+++.|.+.|.+.|.+|.... . +.++.-+.+.+.+++..+
T Consensus 103 ~~~~~~~~~~~i~~A~~lG~~~v~~~~~~~---~-~~~~~~~~~~~~l~~l~~ 151 (303)
T 3l23_A 103 TPKIMEYWKATAADHAKLGCKYLIQPMMPT---I-TTHDEAKLVCDIFNQASD 151 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECSCCC---C-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCC---C-CCHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999985322 1 334444555666655554
No 52
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=53.70 E-value=16 Score=25.52 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=39.1
Q ss_pred EEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCc--EEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhcC
Q 034374 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQ--YIAF-P--AISCGVSQYPPDEAATIAISTVKEFANDF 84 (96)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~--SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~~ 84 (96)
.|=|+|-.....+ ...+.+.+-++.+|.......++ -||. | +||||.. +..+-++-+...||+++.++
T Consensus 125 pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~~~vvIAYEPvWAIGTG~~--Atpe~a~evh~~IR~~l~~~ 199 (256)
T 1aw2_A 125 PVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKA--ATAEDAQRIHAQIRAHIAEK 199 (256)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCGGGGTTCEEEECCTTTTTSSCC--CCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCHHHcCCEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHhc
Confidence 4556665432211 23445555566666544333333 5565 7 8999855 44455566789999997653
No 53
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=53.43 E-value=77 Score=25.28 Aligned_cols=66 Identities=11% Similarity=-0.003 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCC--CCcChHHHHHHHHHHHHHHHhcCC-ceEEEEEeee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGV--SQYPPDEAATIAISTVKEFANDFK-EVSHDKFCLM 95 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~--~g~p~~~~a~~~~~~i~~~~~~~~-~v~~Vi~~~~ 95 (96)
.+.|..+|+.-++...+.|++.|-+ |+++.+. .+.+.++..+.+++.+...++..+ ...+.+++|+
T Consensus 580 ~~~lA~a~~~ev~~L~~aG~~~IQiDEP~l~~~l~~~~~~~~~~~~~av~~~~~~~~~v~~~~~i~~HiC~ 650 (765)
T 1u1j_A 580 CYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCY 650 (765)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCSSGGGHHHHHHHHHHHHHHHHTTSCSSSEEEEECSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCcccccccccCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEecc
Confidence 3567778888888888889987776 9888775 334556777778888888777665 4677788874
No 54
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=53.21 E-value=49 Score=22.28 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=26.7
Q ss_pred CCceEEEecCCCcCCCC--CcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHC--NPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++...... +..+.++ ....+.++.|.+.+.+.+-+
T Consensus 67 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~ 115 (330)
T 2c20_A 67 NIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIF 115 (330)
T ss_dssp CEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEE
Confidence 57899999987532100 1111222 34557778888888877766
No 55
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=52.65 E-value=45 Score=21.69 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
..+...+.++++++.|.+.|.+.|.+.. |....+++.++.-+.+.+.+++..+
T Consensus 79 ~~~~~~~~~~~~i~~a~~lG~~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~l~~ 131 (260)
T 1k77_A 79 REHEAHADIDLALEYALALNCEQVHVMA-GVVPAGEDAERYRAVFIDNIRYAAD 131 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCC-CBCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECc-CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3566778899999999999999997731 2222345667776777777766554
No 56
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=52.57 E-value=3.5 Score=27.81 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=26.6
Q ss_pred CCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
+++.|||++++.........+.=-....+.++.|.+.+.+.+-+
T Consensus 63 ~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~ 106 (286)
T 3gpi_A 63 RPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFF 106 (286)
T ss_dssp CCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 37999999987542211100111234567788888888887766
No 57
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Probab=52.50 E-value=17 Score=25.37 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=38.1
Q ss_pred EEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCc--EEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQ--YIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~--SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
.|=|+|-.....+ ...+.+.+-++.+|.......++ -||. | +||||.. +..+-++-+...||+++.+
T Consensus 123 pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~~~vvIAYEPvWAIGTG~~--Atpe~a~evh~~IR~~l~~ 196 (255)
T 1tre_A 123 PVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKS--ATPAQAQAVHKFIRDHIAK 196 (255)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCGGGGTTCEEEECCGGGSSSSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCHHHcCcEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHh
Confidence 4556665432211 23445556666666544333333 5565 7 8999855 4444456678888888653
No 58
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Probab=52.05 E-value=17 Score=25.31 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=37.7
Q ss_pred EEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCc--EEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQ--YIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~--SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
.|=|+|-.....+ ...+.+.+-++.+|.......++ -||. | +||||.. +..+-++-+...||+++.+
T Consensus 123 pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~~~~vIAYEPvWAIGTG~~--Atpe~a~evh~~IR~~l~~ 196 (250)
T 2j27_A 123 VIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKV--ATPQQAQEAHALIRSWVSS 196 (250)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCCGGGGGGEEEEEECGGGTTSSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCHHHhhcccHHHHHHHHHHHHHhcCCHHHhCCEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4555655432111 23445555566666443323333 4554 6 8999855 4445556678999998764
No 59
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=51.25 E-value=37 Score=23.48 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=27.3
Q ss_pred CCceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++.-....+..+.++ ....+.++.|.+.+.+ +-+
T Consensus 90 ~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~ 135 (362)
T 3sxp_A 90 HFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIY 135 (362)
T ss_dssp CCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEE
T ss_pred CCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEE
Confidence 579999999964322122233333 4556888888888887 443
No 60
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=49.60 E-value=8.3 Score=26.92 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=36.4
Q ss_pred EEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhC--CCcEEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKAN--NIQYIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~--~~~SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
.|=|+|-.....+ ...+.+.+-++.+|...... .---||. | |||||.. +..+-++-+...||+++.+
T Consensus 122 pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~~~~vIAYEPvWAIGTG~~--Atpe~a~evh~~IR~~l~~ 195 (252)
T 2btm_A 122 PIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKS--STPEDANSVCGHIRSVVSR 195 (252)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCHHHHTTCEEEECCGGGTTTSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHhCCCHHHHHHHHHHHHHhcCCHHHcCCEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4555554432111 22344555555555332211 2225666 7 8999855 4555566688999998753
No 61
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Probab=49.44 E-value=21 Score=24.98 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=37.6
Q ss_pred EEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCc--EEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQ--YIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~--SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
.|=|+|-...... ...+.+.+-++.+|.......++ -||. | +||||.. +..+-++-+...|++++.+
T Consensus 130 pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~~~~vIAYEPvWAIGTG~~--Atpe~a~evh~~IR~~l~~ 203 (261)
T 1m6j_A 130 VIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKT--ATPDQAQEVHQYIRKWMTE 203 (261)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHHHSCTGGGGGEEEEECCGGGSSSSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHhCCCHHHHHHHHHHHHHhcCCHHHcCCEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4555655432111 23445555566666544323333 4454 6 8999854 4455556678999988764
No 62
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=49.22 E-value=56 Score=21.80 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.+...+.++++++.|.+.|.+.|.++.... -.+.+.++.-+.+.+.+.+..+
T Consensus 103 r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~ 154 (295)
T 3cqj_A 103 RAQGLEIMRKAIQFAQDVGIRVIQLAGYDV-YYQEANNETRRRFRDGLKESVE 154 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCCSC-SSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCC-CcCcCHHHHHHHHHHHHHHHHH
Confidence 345567788999999999999999872211 1233456666666666665554
No 63
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=48.85 E-value=22 Score=24.77 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=25.0
Q ss_pred CceEEEecCCCcCCCCCc-HHHHHHHHHHHHHhHHhCCCc-EEEe
Q 034374 12 VSHVIHTVGPVFNFHCNP-EDILRSAYKNCLSVGKANNIQ-YIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~-~~~L~~~~~~~L~~a~~~~~~-SIAf 54 (96)
++.|||++++.......+ .+.=....++.++.|.+.+.+ .+-+
T Consensus 47 ~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~ 91 (369)
T 3st7_A 47 ADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILL 91 (369)
T ss_dssp CSEEEECCCSBCTTCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEE
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 689999998765432110 000012345677778888877 5554
No 64
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Probab=48.79 E-value=13 Score=25.75 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=37.4
Q ss_pred EEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCc--EEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQ--YIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~--SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+|=|+|-.....+ ...+.+.+-++.+|.......++ -||. | |||||.. +..+-++-+...||+++.+
T Consensus 117 pI~CvGEtleereag~t~~vv~~Ql~~~l~~~~~~~~~~~vIAYEPvWAIGTG~~--Atpe~aqevh~~IR~~l~~ 190 (244)
T 2v5b_A 117 VIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKV--ATPQQAQEVHELLRRWVRS 190 (244)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCTGGGGGEEEEECCHHHHSSSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCHHHcCCEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4556665432211 23445555555666433222233 4454 6 8999965 4445556678999998764
No 65
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Probab=48.21 E-value=35 Score=23.63 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=37.1
Q ss_pred EEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
.|=|+|-.....+ ...+.+.+-++.+|.-.+..+---||. | |||||.. +..+-++-+...||+++.+
T Consensus 122 pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~~vIAYEPvWAIGTG~~--Atpe~a~evh~~IR~~l~~ 193 (247)
T 1ney_A 122 VILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVXAIGTGLA--ATPEDAQDIHASIRKFLAS 193 (247)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHHHCCCCTTEEEEECCGGGTTTSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHCCCHHHHHHHHHHHHHhchhhhcCEEEEECChhhcCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4556655432211 233445555555553332223335555 7 8999955 4445556678999998764
No 66
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=48.17 E-value=63 Score=22.06 Aligned_cols=59 Identities=5% Similarity=0.057 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcC--CceEEEE
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDF--KEVSHDK 91 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~--~~v~~Vi 91 (96)
..+...+.++.+++.|.+.|.+.|.+|.... + ..++.-+.+.+.+++..+.. ..|++.+
T Consensus 108 ~~~~~~~~~~~~i~~A~~lG~~~v~~~~~~~---~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 168 (305)
T 3obe_A 108 NMPKFDEFWKKATDIHAELGVSCMVQPSLPR---I-ENEDDAKVVSEIFNRAGEITKKAGILWGY 168 (305)
T ss_dssp GHHHHHHHHHHHHHHHHHHTCSEEEECCCCC---C-SSHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEeCCCCC---C-CCHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3456678899999999999999999984321 1 23444455566666555422 2355544
No 67
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Probab=47.71 E-value=17 Score=25.42 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=35.9
Q ss_pred EEEecCCCcCCCC--CcHHHHHHHHHHHHHhH-HhCC-Cc--EEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVG-KANN-IQ--YIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a-~~~~-~~--SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+|=|+|-.....+ ...+.+.+-++.+|... .... ++ -||. | +||||.. +..+-++-+...|++++.+
T Consensus 124 pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~~~~~vvIAYEPvWAIGTG~~--Atpe~aqevh~~IR~~l~~ 199 (257)
T 2yc6_A 124 VIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVV--ATPEQAEEVHVGLRKWFVE 199 (257)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHTTCHHHHHTEEEEECCGGGTTTSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcCCChhhccCCEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4556655432211 23344555555555433 2111 22 4555 7 8999854 3444456678899998753
No 68
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=47.32 E-value=68 Score=22.23 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=26.6
Q ss_pred CceEEEecCCCcCCCC--CcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHC--NPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~--~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
++.|||++++...... +..+.++ ....+.++.+.+.+.+.|-+
T Consensus 94 ~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~ 141 (397)
T 1gy8_A 94 IDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIF 141 (397)
T ss_dssp CCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEE
Confidence 7999999997532100 1112222 34456777888888887776
No 69
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Probab=47.28 E-value=38 Score=23.67 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+.+.+-++.+|+-.+..+---||. | |||||.. +..+-++-+...||+++.+
T Consensus 140 ~vv~~Ql~~~l~~~~~~~~~vIAYEPvWAIGTG~~--Atpe~aqevh~~IR~~l~~ 193 (259)
T 2i9e_A 140 EVVFRQTKAIAAKVNDWSNVVIAYEPVWAIGTGKT--ATPQQAQDVHKALRQWICE 193 (259)
T ss_dssp HHHHHHHHHHHHHCSCCTTEEEEECCGGGTTSSSC--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhhcCEEEEEcCHHHcCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 344444555553332223334555 7 8999955 4455556678999998864
No 70
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=46.81 E-value=27 Score=23.10 Aligned_cols=44 Identities=20% Similarity=0.079 Sum_probs=27.6
Q ss_pred CCceEEEecCCCcC---CCCCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFN---FHCNPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~---~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
+++.|||++++.-. ...+..+.++ ....+.++.|.+.+++.+-+
T Consensus 61 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~ 110 (319)
T 4b8w_A 61 QPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVS 110 (319)
T ss_dssp CCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 47999999998421 0112222222 33457888889999987766
No 71
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=46.39 E-value=42 Score=22.13 Aligned_cols=39 Identities=21% Similarity=0.438 Sum_probs=27.0
Q ss_pred CceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEec
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfP 55 (96)
++.|||++++.+. . +.--....+.++.|.+.|.+.+-+.
T Consensus 67 ~d~vi~~a~~~~~----~-~~n~~~~~~l~~a~~~~~~~~~v~~ 105 (287)
T 2jl1_A 67 VSKLLFISGPHYD----N-TLLIVQHANVVKAARDAGVKHIAYT 105 (287)
T ss_dssp CSEEEECCCCCSC----H-HHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCEEEEcCCCCcC----c-hHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6899999997542 1 1112345788888888898877664
No 72
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=45.58 E-value=61 Score=21.40 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=28.0
Q ss_pred CCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEec
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfP 55 (96)
.++.|||++++.... . .-....++.++.|.+.|.+.|-+-
T Consensus 65 ~~d~vi~~a~~~~~~----~-~~~~~~~~l~~aa~~~gv~~iv~~ 104 (289)
T 3e48_A 65 GMDTVVFIPSIIHPS----F-KRIPEVENLVYAAKQSGVAHIIFI 104 (289)
T ss_dssp TCSEEEECCCCCCSH----H-HHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEeCCCCccc----h-hhHHHHHHHHHHHHHcCCCEEEEE
Confidence 368999999875421 1 122445788888999999877763
No 73
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=45.37 E-value=69 Score=21.72 Aligned_cols=44 Identities=11% Similarity=-0.025 Sum_probs=26.2
Q ss_pred CceEEEecCCCcCCCC--CcHHHH---HHHHHHHHHhHHhCCCcEEEec
Q 034374 12 VSHVIHTVGPVFNFHC--NPEDIL---RSAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~--~~~~~L---~~~~~~~L~~a~~~~~~SIAfP 55 (96)
++.|||++++...... +..+.+ -....+.++.|.+.+.+.+-+-
T Consensus 99 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~ 147 (346)
T 4egb_A 99 VQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQV 147 (346)
T ss_dssp CCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 7899999997543211 111112 2235678888889999877663
No 74
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=44.37 E-value=20 Score=21.11 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=26.3
Q ss_pred CceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCC
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNI 49 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~ 49 (96)
-+|+|.+.+|++.. ..+.|++++..+.+..+++|-
T Consensus 52 P~Y~i~~~~~D~k~---ge~~L~~ai~~i~~~i~~~gG 86 (93)
T 2qn6_B 52 PRYRVDVVGTNPKE---ASEALNQIISNLIKIGKEENV 86 (93)
T ss_dssp TEEEEEEEESCHHH---HHHHHHHHHHHHHHHHHHTTE
T ss_pred CeEEEEEEecCHHH---HHHHHHHHHHHHHHHHHHhCC
Confidence 36888888887653 467888888888888877763
No 75
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Probab=43.73 E-value=21 Score=24.81 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=36.0
Q ss_pred EEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCc--EEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQ--YIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~--SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+|=|+|-.....+ ...+.+.+-++.+|.......++ -||. | +||||.. +..+-++-+...|++++.+
T Consensus 124 pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~~~~vIAYEPvWAIGTG~~--Atpe~a~evh~~IR~~l~~ 197 (251)
T 2vxn_A 124 VIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKV--ATPEQAQEVHLLLRKWVSE 197 (251)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCTGGGGGEEEEECCGGGSSSSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHhCCCHHHHHHHHHHHHHhcCCHHHhCCEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4555554432111 22344555555555333222223 4555 6 8999855 4455556688999988864
No 76
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Probab=43.51 E-value=74 Score=21.53 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=26.1
Q ss_pred CceEEEecCCCcCCCCCcH-HHHH---HHHHHHHHhHHhCC-CcEEEec
Q 034374 12 VSHVIHTVGPVFNFHCNPE-DILR---SAYKNCLSVGKANN-IQYIAFP 55 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~-~~L~---~~~~~~L~~a~~~~-~~SIAfP 55 (96)
++.|||.++|.-....+.. +.++ ....+.++.|.+.+ .+.|-+-
T Consensus 78 ~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~ 126 (337)
T 2c29_D 78 CTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFT 126 (337)
T ss_dssp CSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEe
Confidence 6899999998521111211 1222 34467777777766 7777664
No 77
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=43.30 E-value=73 Score=21.44 Aligned_cols=59 Identities=7% Similarity=-0.024 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEE
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDK 91 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi 91 (96)
+.-.+.++++++.|.+.|.+.|.+.. |.. .+-+.++.-+.+.+.+++..+....|++.+
T Consensus 90 ~~~~~~~~~~i~~A~~lGa~~vv~h~-g~~-~~~~~~~~~~~~~~~l~~l~~~a~gv~l~l 148 (303)
T 3aal_A 90 SLGVDFLRAEIERTEAIGAKQLVLHP-GAH-VGAGVEAGLRQIIRGLNEVLTREQNVQIAL 148 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEECC-EEC-TTSCHHHHHHHHHHHHHHHCCSSCSCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECC-CcC-CCCCHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45566788899999999999997732 111 122667777777777777665334455543
No 78
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A
Probab=43.25 E-value=26 Score=24.43 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhHHhCCCcE--EEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 31 DILRSAYKNCLSVGKANNIQY--IAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~S--IAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+.+.+-++.+|.-.....++. ||. | +||||.. +..+-++-+...|++++.+
T Consensus 143 ~vv~~Ql~~~l~~~~~~~~~~~vIAYEPvWAIGTG~~--Atpe~aqevh~~IR~~l~~ 198 (255)
T 3qst_A 143 EFVSAQIEKMIPAIPAGKWDDVVIAYEPIWAIGTGKV--ASTQDAQEMCKVIRDILAA 198 (255)
T ss_dssp HHHHHHHHHHGGGSCTTCGGGEEEEECCGGGSSSSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHhCCEEEEECCHHHhcCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 344444455554322223333 444 7 8999875 4444457778889988754
No 79
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1
Probab=42.57 E-value=38 Score=23.88 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=35.9
Q ss_pred EEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+|=++|-...... ...+.+.+-++.+|.-.+..+---||. | |||||.. +..+-++-+...||+++.+
T Consensus 142 pI~CvGEtleeReag~t~~vv~~Ql~~~l~~~~~~~~vvIAYEPvWAIGTGkt--Atpe~aqevh~~IR~~l~~ 213 (275)
T 1mo0_A 142 VVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKT--ASGEQAQEVHEWIRAFLKE 213 (275)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHTTTCCSTTEEEEECCGGGTTTSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHhCCChHHHHHHHHHHHHhhhhhhcCEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4555554432111 223444455555553222222334555 7 8999955 4445556678999988764
No 80
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Probab=42.26 E-value=35 Score=23.66 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=36.0
Q ss_pred EEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+|=|+|-...... ...+.+.+-++.+|.-.+..+---||. | +||||.. +..+-++-+...|++++.+
T Consensus 123 pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~~vIAYEPvWAIGTG~~--Atpe~a~evh~~IR~~l~~ 194 (248)
T 1r2r_A 123 VIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKT--ATPQQAQEVHEKLRGWLKS 194 (248)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCSCGGGEEEEECCGGGSSSSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHhCCChHHHHHHHHHHHHhhhhhhhceEEEEecHHhhCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4555655432111 223445555555554331122234555 7 8999855 4455556678999988764
No 81
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}
Probab=42.24 E-value=70 Score=20.91 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=25.4
Q ss_pred CceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
++.|||++++.... .-.+.++ ....+.++.+.+.+.+.|-+
T Consensus 64 ~d~vi~~a~~~~~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~ 107 (267)
T 3ay3_A 64 CDGIIHLGGVSVER--PWNDILQANIIGAYNLYEAARNLGKPRIVF 107 (267)
T ss_dssp CSEEEECCSCCSCC--CHHHHHHHTHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCcCCCCC--CHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 68999999975211 1111221 23456777777888877766
No 82
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=42.22 E-value=32 Score=23.54 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=26.8
Q ss_pred CCceEEEecCCCcCCCC--CcHHHH---HHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHC--NPEDIL---RSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L---~~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++...... +..+.+ -....+.++.|.+.+.+.+-+
T Consensus 100 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~ 148 (351)
T 3ruf_A 100 GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 148 (351)
T ss_dssp TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 47899999986321110 111111 233457788888889887766
No 83
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Probab=41.85 E-value=25 Score=24.14 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=25.2
Q ss_pred CceEEEecCCCcCCCCCcHHHH---HHHHHHHHHhHHhC--CCcEEE
Q 034374 12 VSHVIHTVGPVFNFHCNPEDIL---RSAYKNCLSVGKAN--NIQYIA 53 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L---~~~~~~~L~~a~~~--~~~SIA 53 (96)
++.|||++++... +..+.. -....+.++.|.+. +.+.+-
T Consensus 73 ~d~vih~a~~~~~---~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v 116 (364)
T 2v6g_A 73 VTHVFYVTWANRS---TEQENCEANSKMFRNVLDAVIPNCPNLKHIS 116 (364)
T ss_dssp CCEEEECCCCCCS---SHHHHHHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred CCEEEECCCCCcc---hHHHHHHHhHHHHHHHHHHHHHhccccceEE
Confidence 8999999997642 122222 23456778888877 677764
No 84
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=41.38 E-value=68 Score=20.53 Aligned_cols=42 Identities=7% Similarity=0.120 Sum_probs=26.6
Q ss_pred CCceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++|+.... +..+.++ ....+.++.+.+.+.+.|-+
T Consensus 84 ~~D~vi~~ag~~~~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~ 128 (236)
T 3e8x_A 84 SIDAVVFAAGSGPHT--GADKTILIDLWGAIKTIQEAEKRGIKRFIM 128 (236)
T ss_dssp TCSEEEECCCCCTTS--CHHHHHHTTTHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEEECCCCCCCC--CccccchhhHHHHHHHHHHHHHcCCCEEEE
Confidence 479999999975432 1122221 23456777777888887776
No 85
>3kwr_A Putative RNA-binding protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS binding protein; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=40.37 E-value=39 Score=20.00 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=29.1
Q ss_pred CCcEEEeccc-ccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 48 NIQYIAFPAI-SCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 48 ~~~SIAfPai-gtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+.=.+.||-+ |+-..|=..+++.+-+.+++..|+..
T Consensus 20 ~gy~v~fPDlPGc~T~GdT~eEAl~nA~EAL~~~Le~ 56 (97)
T 3kwr_A 20 TYWDVRFPDVPAAQTFGASVQVAADNAANALAIALFE 56 (97)
T ss_dssp SSEEEECTTCGGGCEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCCcEEecCCHHHHHHHHHHHHHHHHHh
Confidence 3456888888 77788888899999888888888764
No 86
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=39.47 E-value=93 Score=21.51 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=36.5
Q ss_pred CCceEEEecCCCcCCCC--CcHHHHH---HHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374 11 PVSHVIHTVGPVFNFHC--NPEDILR---SAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L~---~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~ 79 (96)
.++.|||+++....... +..+.++ ....+.++.|.+.+.+.+-+-.=..+......--+++.+.+.+..
T Consensus 91 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~~p~~~Y~~sK~~~E~~~~ 164 (344)
T 2gn4_A 91 GVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAANPINLYGATKLCSDKLFV 164 (344)
T ss_dssp TCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSSCCSHHHHHHHHHHHHHH
T ss_pred cCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccCCCccHHHHHHHHHHHHHH
Confidence 46899999986431100 1122222 223577888888898877763222222223334445555555533
No 87
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=39.20 E-value=92 Score=21.39 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCC------cChHHHHHHHHHHHHHHHhcCCceEE
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ------YPPDEAATIAISTVKEFANDFKEVSH 89 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g------~p~~~~a~~~~~~i~~~~~~~~~v~~ 89 (96)
+.-.+.++++++.|.+.|.+.|.+. +|.-| .+.++.-+.+.+.+++..+..+++++
T Consensus 103 ~~~i~~~~~~i~~A~~LGa~~vv~~---~g~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i 164 (333)
T 3ktc_A 103 AAAFELMHESAGIVRELGANYVKVW---PGQDGWDYPFQVSHKNLWKLAVDGMRDLAGANPDVKF 164 (333)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEC---CTTCEESSTTSSCHHHHHHHHHHHHHHHHHTCTTSEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEC---CCCCCcCCCCcCCHHHHHHHHHHHHHHHHHHhhcCCE
Confidence 4445678889999999999999763 34222 24666777777777776665555443
No 88
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A
Probab=39.13 E-value=1.3e+02 Score=24.39 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCCC---CcChHHHHHHHHHHHHHHHhcCC-ceEEEEEeee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGVS---QYPPDEAATIAISTVKEFANDFK-EVSHDKFCLM 95 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~---g~p~~~~a~~~~~~i~~~~~~~~-~v~~Vi~~~~ 95 (96)
..+|..+|+.-++...+.|++-|=| |++..|.- |.+.++..+.+++++..-++..+ +..+.++.|+
T Consensus 611 ~~dlA~A~r~Ei~~L~~AG~r~IQiDEPal~e~l~~r~g~d~~~~l~~av~a~n~a~~g~p~d~~I~tHiC~ 682 (789)
T 3ppg_A 611 ALQLGLALRDEVNDLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGVENSTQIHSHFCY 682 (789)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECTTTGGGSCSSSSHHHHHHHHHHHHHHHHHHSSSCTTSEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcccchhhcccccccCCHHHHHHHHHHHHHHHHhcCCCCcEEEEeccC
Confidence 4678889999999999999999887 99876542 24556777888888888887776 4677777774
No 89
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=38.74 E-value=86 Score=20.92 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=26.6
Q ss_pred CCceEEEecCCCcCCCC--CcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHC--NPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||.+++...... +..+.++ ....+.++.+.+.+.+.+-+
T Consensus 63 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~ 111 (313)
T 3ehe_A 63 GAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVF 111 (313)
T ss_dssp TCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 47899999986432211 2222222 23456777788888877766
No 90
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A
Probab=38.66 E-value=79 Score=25.25 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCC--CCcChHHHHHHHHHHHHHHHhcCC-ceEEEEEeee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGV--SQYPPDEAATIAISTVKEFANDFK-EVSHDKFCLM 95 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~--~g~p~~~~a~~~~~~i~~~~~~~~-~v~~Vi~~~~ 95 (96)
.+.|..+|+.-++...+.|++.|-+ |+++.+. .+.+.++..+.+++.+...++..+ ...+.+++|+
T Consensus 565 ~~~lA~a~~~ei~~L~~aG~~~IQiDEP~l~~~l~~~~~~~~~~~~~av~~l~~~~~~v~~~~~i~~HiC~ 635 (755)
T 2nq5_A 565 FNQIGLAIKDEIKLLENAGIAIIQVDEAALREGLPLRKSKQKAYLDDAVHAFHIATSSVKDETQIHTHMCY 635 (755)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECCHHHHSCSSHHHHHHHHHHHHHHHHHHHSSSCTTSEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCCcccccccccCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEecc
Confidence 3567778888888888889987766 9888765 223345566777777777777665 4677788874
No 91
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=38.53 E-value=68 Score=19.70 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=27.3
Q ss_pred CceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEec
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfP 55 (96)
++.|||++++........ .-.....+.++.+.+.+.+.+-+.
T Consensus 68 ~d~vi~~a~~~~~~~~~~--~n~~~~~~~~~~~~~~~~~~~v~~ 109 (206)
T 1hdo_A 68 QDAVIVLLGTRNDLSPTT--VMSEGARNIVAAMKAHGVDKVVAC 109 (206)
T ss_dssp CSEEEECCCCTTCCSCCC--HHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEECccCCCCCCccc--hHHHHHHHHHHHHHHhCCCeEEEE
Confidence 689999999754321121 223456677777888888877764
No 92
>3biy_A Histone acetyltransferase P300; P300 HAT, bisubstrate inhibitor, protein-inhibitor complex; HET: 01K; 1.70A {Homo sapiens}
Probab=37.42 E-value=19 Score=26.65 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=26.3
Q ss_pred ceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCC
Q 034374 13 SHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNI 49 (96)
Q Consensus 13 k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~ 49 (96)
+||+|+. |.++.- -..+.|+.=|++.|+.|.+.|+
T Consensus 159 DYIF~~H-P~~Qk~-p~~~rL~~WY~~mL~kg~~~gi 193 (380)
T 3biy_A 159 DYIFHCH-PPDQKI-PKPKRLQEWYKKMLDKAVSERI 193 (380)
T ss_dssp CSSSSSC-CTTCCC-CCHHHHHHHHHHHHHHHHHTTS
T ss_pred ceEEeeC-ccccCC-CCcHHHHHHHHHHHHHHHHcCe
Confidence 6788776 434332 3467999999999999988875
No 93
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=37.07 E-value=44 Score=23.37 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=26.9
Q ss_pred CCceEEEecCCCcCC---CCCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNF---HCNPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~---~~~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++.... ..+..+.++ ....+.++.|.+.+.+.+-+
T Consensus 93 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~ 142 (379)
T 2c5a_A 93 GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFY 142 (379)
T ss_dssp TCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 478999999974211 111222222 34557788888888877665
No 94
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=36.87 E-value=79 Score=19.95 Aligned_cols=41 Identities=5% Similarity=-0.005 Sum_probs=25.8
Q ss_pred CCceEEEecCCCcCCCCC-cHHHHHHHHHHHHHhHHhCCCcEEEec
Q 034374 11 PVSHVIHTVGPVFNFHCN-PEDILRSAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~-~~~~L~~~~~~~L~~a~~~~~~SIAfP 55 (96)
.++.|||++|+......+ .. ....+.++.+.+.+.+.+-+.
T Consensus 63 ~~d~vi~~ag~~~~~~~~~n~----~~~~~l~~a~~~~~~~~iv~~ 104 (219)
T 3dqp_A 63 GMDAIINVSGSGGKSLLKVDL----YGAVKLMQAAEKAEVKRFILL 104 (219)
T ss_dssp TCSEEEECCCCTTSSCCCCCC----HHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEECCcCCCCCcEeEeH----HHHHHHHHHHHHhCCCEEEEE
Confidence 379999999986543211 11 123456666777888877763
No 95
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=36.13 E-value=93 Score=20.58 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=26.9
Q ss_pred CCceEEEecCCCcCCCC-CcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHC-NPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~-~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++...... +..+.++ ....+.++.|.+.+.+.+-+
T Consensus 68 ~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 115 (312)
T 2yy7_A 68 KITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFW 115 (312)
T ss_dssp TCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEEC
T ss_pred CCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 57899999987422100 1111222 34557788888888877766
No 96
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=35.39 E-value=1.5e+02 Score=22.65 Aligned_cols=29 Identities=17% Similarity=0.497 Sum_probs=22.3
Q ss_pred HHHHHHhHHhCCCcEEEecccccCCCCcChH
Q 034374 37 YKNCLSVGKANNIQYIAFPAISCGVSQYPPD 67 (96)
Q Consensus 37 ~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~ 67 (96)
+.+.++.|.+.|.+=|.||=+. ..|||++
T Consensus 28 i~~~i~~Aa~~GAdLvvfPEL~--ltGY~~~ 56 (565)
T 4f4h_A 28 IVAAAQAAHDAGAHFLIAPELA--LSGYPPE 56 (565)
T ss_dssp HHHHHHHHHHTTCSEEECCTTT--TTCSCCG
T ss_pred HHHHHHHHHHCCCcEEECCCCc--ccCCChH
Confidence 4456777899999999999886 4567653
No 97
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=35.17 E-value=1e+02 Score=20.74 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=26.6
Q ss_pred CCceEEEecCCCcCCCC--CcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHC--NPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||.++..-.... ...+.++ ....+.++.+.+.+.+.|-+
T Consensus 78 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~ 126 (341)
T 3enk_A 78 PITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVF 126 (341)
T ss_dssp CCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57899999986421110 1112222 23456778888888887776
No 98
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Probab=35.11 E-value=42 Score=26.06 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccC---CCCcChHHHHHHHHHHHH
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCG---VSQYPPDEAATIAISTVK 78 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG---~~g~p~~~~a~~~~~~i~ 78 (96)
.+.++.+..+.-+.+..+.+....|+..|.+ ..++++|-..|.+++-..
T Consensus 377 ~~~I~~a~~~~~~~~~~~~~~~~~f~~yGK~~iK~~k~SPDafvQmAlQLA~ 428 (612)
T 1xl7_A 377 LNDVSQAKAQHLKAASDLQIAASTFTSFGKKLTKEEALHPDTFIQLALQLAY 428 (612)
T ss_dssp HHHHHHHHHHHHHHHHTEEEEEEEEC-----------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcceeEEEecCCCHHHHHhCCCCccHHHHHHHHHHH
Confidence 4566777777777888999999999999998 478999999999988654
No 99
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=34.92 E-value=35 Score=22.91 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=26.9
Q ss_pred CCceEEEecCCCcCCC---CCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFH---CNPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~---~~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++..... .+..+.++ ....+.++.|.+.+.+.+-+
T Consensus 55 ~~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 104 (321)
T 1e6u_A 55 RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLF 104 (321)
T ss_dssp CCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 5789999998752100 01121221 34567888888888877665
No 100
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=34.53 E-value=89 Score=20.93 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=25.8
Q ss_pred CCceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHh-CCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKA-NNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~-~~~~SIAf 54 (96)
.++.|||++++..... +..+.++ ....+.++.|.+ .+.+.+-+
T Consensus 83 ~~d~vih~A~~~~~~~-~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~ 129 (342)
T 1y1p_A 83 GAAGVAHIASVVSFSN-KYDEVVTPAIGGTLNALRAAAATPSVKRFVL 129 (342)
T ss_dssp TCSEEEECCCCCSCCS-CHHHHHHHHHHHHHHHHHHHHTCTTCCEEEE
T ss_pred CCCEEEEeCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 4799999999754321 2222222 334567777763 57777765
No 101
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1
Probab=34.18 E-value=18 Score=25.30 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhHHhC--CCcEEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 31 DILRSAYKNCLSVGKAN--NIQYIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~--~~~SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+.+.+-++.+|...... +---||. | |||||.. +..+-++-+...||+++.+
T Consensus 142 ~vv~~Ql~~~l~~~~~~~~~~~vIAYEPvWAIGTG~~--Atpe~aqevh~~IR~~l~~ 197 (255)
T 1b9b_A 142 CVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRV--ATPQQAQEVHAFIRKLLSE 197 (255)
T ss_dssp HHHHHHHHHHHTTCCHHHHTTCEEEECCGGGSSSSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHcCCEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 34444445555332111 2345666 6 8999865 4455566788999998764
No 102
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=33.92 E-value=72 Score=21.56 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=23.9
Q ss_pred CceEEEecCCCcCCCCCc-HHHHH---HHHHHHHHhHHhCC-CcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNP-EDILR---SAYKNCLSVGKANN-IQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~-~~~L~---~~~~~~L~~a~~~~-~~SIAf 54 (96)
++.|||.++|.-....+. .+.++ ....+.++.|.+.+ .+.|-+
T Consensus 81 ~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~ 128 (338)
T 2rh8_A 81 CDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVIL 128 (338)
T ss_dssp CSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEE
Confidence 689999999752111111 11222 34557777777775 777765
No 103
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A
Probab=33.54 E-value=15 Score=25.84 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=22.5
Q ss_pred cEEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 50 QYIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 50 ~SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
--||- | |||||.. +..+-++-+...||+++.+
T Consensus 167 vvIAYEPVWAIGTG~t--Atpe~aqevh~~IR~~l~~ 201 (267)
T 3ta6_A 167 VVIAYEPVWAIGTGRV--ASAADAQEVCAAIRKELAS 201 (267)
T ss_dssp CEEEECCGGGSSSSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECChhhhcCCcC--CCHHHHHHHHHHHHHHHHH
Confidence 35666 7 8999876 3444556778889998763
No 104
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=33.28 E-value=26 Score=15.54 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=9.9
Q ss_pred CcHHHHHHHHHHH
Q 034374 28 NPEDILRSAYKNC 40 (96)
Q Consensus 28 ~~~~~L~~~~~~~ 40 (96)
.+.++|++|..||
T Consensus 12 sspellrrcldnc 24 (26)
T 2plx_B 12 SSPELLRRCLDNC 24 (26)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcc
Confidence 3567899888876
No 105
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*
Probab=33.27 E-value=83 Score=21.76 Aligned_cols=38 Identities=5% Similarity=-0.067 Sum_probs=23.0
Q ss_pred CCceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCC
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANN 48 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~ 48 (96)
.++.|||++|..-..+.+..+.++ ...++.++.+.+.+
T Consensus 80 ~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~ 120 (327)
T 1y7t_A 80 DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVA 120 (327)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 489999999975433333233443 34556677777664
No 106
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=32.45 E-value=43 Score=26.09 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccC---CCCcChHHHHHHHHHHHH
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCG---VSQYPPDEAATIAISTVK 78 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG---~~g~p~~~~a~~~~~~i~ 78 (96)
.+.++.+..+.-+.+....+....|+..|.+ ..++++|-..|.+++-..
T Consensus 369 ~~~I~~a~~~~~~~~~~~~~~~~~f~~yGK~~iK~~k~SPDafiQmAlQLAy 420 (616)
T 1nm8_A 369 KSDIEKAKQNLSIMIQDLDITVMVFHHFGKDFPKSEKLSPDAFIQMALQLAY 420 (616)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEEEEECSCSSHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcceeEEEecCCCHHHHHhCCCChhHHHHHHHHHHH
Confidence 4566777777777889999999999999988 579999999999998764
No 107
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=32.07 E-value=44 Score=20.88 Aligned_cols=43 Identities=5% Similarity=-0.103 Sum_probs=26.5
Q ss_pred CceEEEecCCCcCCCCCcHHHH---HHHHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNPEDIL---RSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L---~~~~~~~L~~a~~~~~~SIAf 54 (96)
++.|||++|+......+..+.. .....+.++.+.+.+.+.+-+
T Consensus 66 ~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 111 (215)
T 2a35_A 66 IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLV 111 (215)
T ss_dssp CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEE
T ss_pred hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEE
Confidence 7999999997542111111111 234567777888888887765
No 108
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=31.97 E-value=53 Score=20.16 Aligned_cols=63 Identities=10% Similarity=0.154 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHh-HHhCCCcEEEec-----ccccCCCCcChHHHHHHHHHHHHHHHhcC--CceEEEEEee
Q 034374 32 ILRSAYKNCLSV-GKANNIQYIAFP-----AISCGVSQYPPDEAATIAISTVKEFANDF--KEVSHDKFCL 94 (96)
Q Consensus 32 ~L~~~~~~~L~~-a~~~~~~SIAfP-----aigtG~~g~p~~~~a~~~~~~i~~~~~~~--~~v~~Vi~~~ 94 (96)
.+++.++..-+. +.+-|+.+=-.- --.-|+|-|.-..+|+..++.-+..++.+ ++|+.-+|++
T Consensus 25 E~~~~f~~lA~si~~epGLiwKiWte~e~t~~aGGiYLFes~~~AeaY~~~h~arl~~~Gi~~i~~kiFdi 95 (113)
T 2hiq_A 25 AMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDV 95 (113)
T ss_dssp HHHHHSHHHHHHHTTSTTEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHHHHHGGGTCCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEcCCCCeeeEEEEeCCHHHHHHHHHHHHHHHHHcCCcceEEEEEec
Confidence 455555544433 344555433221 13457888999999999999988888865 7899999876
No 109
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=31.39 E-value=1.1e+02 Score=20.06 Aligned_cols=51 Identities=4% Similarity=-0.076 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHHhHHhCCCcEEEecccccCCC--CcChHHHHHHHHHHHHHHHh
Q 034374 29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVS--QYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~--g~p~~~~a~~~~~~i~~~~~ 82 (96)
..+...+.++++++.|.+.|.+.|.+. +|.. +.+.++.-+.+.+.+.+..+
T Consensus 78 ~~~~~~~~~~~~i~~A~~lG~~~v~~~---~g~~~~~~~~~~~~~~~~~~l~~l~~ 130 (286)
T 3dx5_A 78 DFEKTIEKCEQLAILANWFKTNKIRTF---AGQKGSADFSQQERQEYVNRIRMICE 130 (286)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEC---SCSSCGGGSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEc---CCCCCcccCcHHHHHHHHHHHHHHHH
Confidence 345667788999999999999999763 2322 12334444555555555544
No 110
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=30.98 E-value=1.2e+02 Score=20.39 Aligned_cols=44 Identities=25% Similarity=0.294 Sum_probs=26.4
Q ss_pred CCceEEEecCCCcCCCC--CcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHC--NPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++...... +..+.++ ....+.++.+.+.+.+.+-+
T Consensus 81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~ 129 (348)
T 1ek6_A 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVF 129 (348)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 47899999987521100 1112222 33456777788888877766
No 111
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*
Probab=30.91 E-value=42 Score=23.22 Aligned_cols=31 Identities=23% Similarity=0.511 Sum_probs=21.0
Q ss_pred EEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 51 YIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 51 SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
-||. | +||||.. +..+-++-+...||+++.+
T Consensus 161 vIAYEPvWAIGTG~~--Atpe~a~evh~~IR~~l~~ 194 (248)
T 1o5x_A 161 ILVYEPLWAIGTGKT--ATPEQAQLVHKEIRKIVKD 194 (248)
T ss_dssp EEEECCGGGSSSSCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4454 6 8999854 3444456678999998764
No 112
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=30.81 E-value=1.1e+02 Score=20.00 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=27.3
Q ss_pred CCceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEec
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAfP 55 (96)
.++.|||.+|..+.. .-.+.++ ....+.++.+.+.+.+.|-+-
T Consensus 64 ~~D~vi~~Ag~~~~~--~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~ 109 (267)
T 3rft_A 64 GCDGIVHLGGISVEK--PFEQILQGNIIGLYNLYEAARAHGQPRIVFA 109 (267)
T ss_dssp TCSEEEECCSCCSCC--CHHHHHHHHTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEECCCCcCcC--CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 368999999985432 1122222 334467777788888887763
No 113
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=30.73 E-value=51 Score=18.76 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=31.6
Q ss_pred hCCCcEEEeccc-ccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 46 ANNIQYIAFPAI-SCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 46 ~~~~~SIAfPai-gtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
+.|.=.+.||-+ |+-..|-..+++.+-+.+++..|+.
T Consensus 25 edg~y~~~~Pdlpgc~t~G~T~eEA~~~a~eAl~~~le 62 (87)
T 2dsy_A 25 DEEPYYGEIPDLPGVWATGKSLKECEANLQAALEDWLL 62 (87)
T ss_dssp SSSCEEEECTTSTTCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCeeEeeCCHHHHHHHHHHHHHHHHH
Confidence 456668899999 7778899999999999999999886
No 114
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=30.26 E-value=1.4e+02 Score=20.83 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=36.4
Q ss_pred CCceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~ 80 (96)
.++.|||++|.....+....+.+. ..+++..+.+.+.+.+.+-+ +..-|.+..+.++.+.+++.
T Consensus 76 gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~vi------v~SNPv~~~~~~~t~~~~~~ 142 (326)
T 1smk_A 76 GMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVN------LISNPVNSTVPIAAEVFKKA 142 (326)
T ss_dssp TCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEE------ECCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEE------EECCchHHHHHHHHHHHHHc
Confidence 389999999855433321111222 44556666666666554444 12357777666666665554
No 115
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=30.14 E-value=1.2e+02 Score=19.89 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEE
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDK 91 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi 91 (96)
.+...+.++++++.|.+.|.+.|.+.. |.. .+.+.++.-+.+.+.+.+..+....+++.+
T Consensus 84 r~~~~~~~~~~i~~A~~lG~~~v~~~~-g~~-~~~~~~~~~~~~~~~l~~l~~~~~gv~l~l 143 (287)
T 2x7v_A 84 WQKSVELLKKEVEICRKLGIRYLNIHP-GSH-LGTGEEEGIDRIVRGLNEVLNNTEGVVILL 143 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECC-EEC-TTSCHHHHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEec-CCC-CCCCHHHHHHHHHHHHHHHHcccCCCEEEE
Confidence 345567788999999999999998732 111 234667777777788877765434565554
No 116
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=30.11 E-value=58 Score=21.44 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=22.1
Q ss_pred CCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHh--CCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKA--NNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~--~~~~SIAf 54 (96)
.++.|||++++.... . .. .++.++.+.+ .+.+.+-+
T Consensus 63 ~~d~vi~~a~~~~~~--~--~~----~~~l~~a~~~~~~~~~~~v~ 100 (286)
T 3ius_A 63 GVTHLLISTAPDSGG--D--PV----LAALGDQIAARAAQFRWVGY 100 (286)
T ss_dssp TCCEEEECCCCBTTB--C--HH----HHHHHHHHHHTGGGCSEEEE
T ss_pred CCCEEEECCCccccc--c--HH----HHHHHHHHHhhcCCceEEEE
Confidence 379999999986432 1 11 2445555555 56776665
No 117
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A*
Probab=29.50 E-value=2e+02 Score=23.20 Aligned_cols=65 Identities=12% Similarity=0.000 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCCCC--cChHHHHHHHHHHHHHHHhcCC-ceEEEEEeee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGVSQ--YPPDEAATIAISTVKEFANDFK-EVSHDKFCLM 95 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~g--~p~~~~a~~~~~~i~~~~~~~~-~v~~Vi~~~~ 95 (96)
.+.|..+|+.-++...+.|++-|-+ |++..+.-. -..++..+.+.+++..- +..+ .+.+.++.||
T Consensus 584 l~dLA~ayreeI~~L~~AGa~~IQIDEPaL~~~L~~~~~d~~~~l~~a~~aln~a-~gv~~~~~I~lH~C~ 653 (766)
T 1t7l_A 584 AYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPIKKSKWPEYFEWAINAFNLA-ANARPETQIHAHMCY 653 (766)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECTHHHHTSCSSGGGHHHHHHHHHHHHHHH-TCCCTTSEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCCcccccCCCcchhHHHHHHHHHHHHHHh-hcCCCCceEEEEEec
Confidence 4678889999999999999998777 999887521 11245556666665544 4443 4677788876
No 118
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Probab=29.26 E-value=46 Score=26.07 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccC---CCCcChHHHHHHHHHHHH
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCG---VSQYPPDEAATIAISTVK 78 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG---~~g~p~~~~a~~~~~~i~ 78 (96)
.+.++.+..+.-+++..+.+....|+..|.+ ..++++|-..|.+++-..
T Consensus 383 ~~~I~~a~~~~~~~~~~~~~~~~~f~~yGK~~iK~~k~SPDafvQmAlQLAy 434 (639)
T 1t1u_A 383 QGHLASSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKYSPDGFIQVALQLAY 434 (639)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEEEEECSCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcceeEEEecCCCHHHHHhCCCCchHHHHHHHHHHH
Confidence 4567777777777889999999999999988 579999999999998754
No 119
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=28.82 E-value=1.2e+02 Score=19.50 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=24.4
Q ss_pred CceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
++.|||++++. ......+++++.+.+.+.+.|-+
T Consensus 89 ~D~vv~~a~~~---------~~~~~~~~~~~~~~~~~~~~iV~ 122 (236)
T 3qvo_A 89 QDIVYANLTGE---------DLDIQANSVIAAMKACDVKRLIF 122 (236)
T ss_dssp CSEEEEECCST---------THHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEcCCCC---------chhHHHHHHHHHHHHcCCCEEEE
Confidence 68999999863 12234567788888888887766
No 120
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Probab=28.74 E-value=65 Score=21.78 Aligned_cols=44 Identities=7% Similarity=0.064 Sum_probs=26.8
Q ss_pred CCceEEEecCCCcCCCC--CcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHC--NPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++...... +..+.++ ....+.++.|.+.+.+.+-+
T Consensus 76 ~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~ 124 (337)
T 1r6d_A 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVH 124 (337)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 47899999987531100 1122222 34567888888888877665
No 121
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=28.61 E-value=2.2e+02 Score=22.64 Aligned_cols=58 Identities=10% Similarity=0.132 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCCCCcChHHHHHHHHHHHHHHHhcC----CceEEEEEeee
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGVSQYPPDEAATIAISTVKEFANDF----KEVSHDKFCLM 95 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~~g~p~~~~a~~~~~~i~~~~~~~----~~v~~Vi~~~~ 95 (96)
.+.|-..|...++...+.|++-|-| |.++... +.+ . .+.+....+.+ +...+++++||
T Consensus 181 l~~L~~~y~~~l~~L~~aG~~~VQiDEP~L~~~l---~~~-~----~~~~~~a~~~l~~~~~~~~i~lhtc~ 244 (765)
T 1u1j_A 181 LPKILPIYKEVITELKAAGATWIQLDEPVLVMDL---EGQ-K----LQAFTGAYAELESTLSGLNVLVETYF 244 (765)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSCC---CHH-H----HHHHHHHHHHSTTTTCSSEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCCccccCC---CHH-H----HHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 4678889999999888999998877 8888754 332 2 34444444443 36788888886
No 122
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Probab=28.56 E-value=49 Score=26.03 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccC---CCCcChHHHHHHHHHHHH
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCG---VSQYPPDEAATIAISTVK 78 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG---~~g~p~~~~a~~~~~~i~ 78 (96)
.+.++.+..+.-+.+..+.+....|+..|.+ ..++++|-..|.+++-..
T Consensus 419 ~~~I~~a~~~~~~~~~~~~~~~~~f~~~GK~~iK~~k~SPDafvQmAlQLA~ 470 (653)
T 2deb_A 419 KAGITAAKEKFDTTVKTLSIDSIQFQRGGKEFLKKKQLSPDAVAQLAFQMAF 470 (653)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcceeEEEecCCCHHHHHhCCCCchHHHHHHHHHHH
Confidence 4566666667777788999999999999987 578999999999998654
No 123
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=28.39 E-value=1.6e+02 Score=20.87 Aligned_cols=65 Identities=6% Similarity=-0.043 Sum_probs=35.4
Q ss_pred CCceEEEecCCCcCCCCCcH----HHHH---HHHHHHHHhHHhCCCcEEEecccccCCCCcC--hHHHHHHHHHHH
Q 034374 11 PVSHVIHTVGPVFNFHCNPE----DILR---SAYKNCLSVGKANNIQYIAFPAISCGVSQYP--PDEAATIAISTV 77 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~----~~L~---~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p--~~~~a~~~~~~i 77 (96)
.++.|||+++.......... +.++ ....+.++.|.+.|.+.+-+ +||.....| .--+++.+.+.+
T Consensus 112 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~gv~r~V~--iSS~~~~~p~~~Yg~sK~~~E~~ 185 (399)
T 3nzo_A 112 QYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDAGAKKYFC--VSTDKAANPVNMMGASKRIMEMF 185 (399)
T ss_dssp CCSEEEECCCCCCGGGGSSHHHHHHHHHHHTHHHHHHHHHHHHTTCSEEEE--ECCSCSSCCCSHHHHHHHHHHHH
T ss_pred CCCEEEECCCcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE--EeCCCCCCCcCHHHHHHHHHHHH
Confidence 47899999986433211122 1222 12346788888999987766 444433333 223344444443
No 124
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=27.99 E-value=35 Score=19.30 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=17.3
Q ss_pred EecCCCcCCCCCcHHHHHHHHH-----HHHHhHHhCCCcE
Q 034374 17 HTVGPVFNFHCNPEDILRSAYK-----NCLSVGKANNIQY 51 (96)
Q Consensus 17 H~v~P~~~~~~~~~~~L~~~~~-----~~L~~a~~~~~~S 51 (96)
|.+||...... ++.+.+-.+ .+|..|.+.|.++
T Consensus 1 ~~~g~qls~~~--ee~I~~fL~~~Gp~~AL~IAK~LGlkt 38 (72)
T 3eyi_A 1 HMASPQFSQQR--EEDIYRFLKDNGPQRALVIAQALGMRT 38 (72)
T ss_dssp ---CCCCSSHH--HHHHHHHHHHHCSEEHHHHHHHTTCCS
T ss_pred CCcchhhhhhh--HHHHHHHHHHcCCchHHHHHHHhCcch
Confidence 67788765421 222222222 5788888888875
No 125
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=27.97 E-value=1.4e+02 Score=20.11 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecc
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPA 56 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPa 56 (96)
+.-.+.++++++.|.+.|.+.|..|.
T Consensus 110 ~~~~~~~~~~i~~A~~lGa~~v~~~~ 135 (316)
T 3qxb_A 110 SLGYQHLKRAIDMTAAMEVPATGMPF 135 (316)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecC
Confidence 44556788999999999999998764
No 126
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS}
Probab=27.16 E-value=1.7e+02 Score=20.90 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=34.2
Q ss_pred eEEEecCCCcCCCC-------CcHHHHHHHHHHHHHhHHhCCCcEEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 14 HVIHTVGPVFNFHC-------NPEDILRSAYKNCLSVGKANNIQYIAF-P--AISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 14 ~IiH~v~P~~~~~~-------~~~~~L~~~~~~~L~~a~~~~~~SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
..|=|+|-...... ...+.+..-++.+|.......---||- | |||||.. +..+-++-+...||+++.
T Consensus 175 ~pIvCVGEtleere~~~~~~g~t~~vv~~Ql~~~l~~l~~~~~vVIAYEPVWAIGTGk~--Atpe~aqevh~~IR~~l~ 251 (310)
T 3s6d_A 175 IPLVCIGEVSTLGPIVSEAIGRAVGECEAQIRPVLEALPRDAPVIFAYEPVWAIGKPQP--ARVDHVGAVVSGIRSVIE 251 (310)
T ss_dssp EEEEEECCCSCCCSSHHHHHHHHHHHHHHHHHHHHHHSCTTSCEEEEECCGGGC-------CCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcHHHhhhhccccccHHHHHHHHHHHHHhcCCcccceEEEECChhhccCCCC--CCHHHHHHHHHHHHHHHH
Confidence 35667776654332 112344444455554333222234555 7 8999865 445556777888998875
No 127
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=27.06 E-value=64 Score=23.57 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=33.8
Q ss_pred HHHHHHhHHhCCCcEEEe-cccc-------cCCCCcChHHHHHHHHHHHHHHHh
Q 034374 37 YKNCLSVGKANNIQYIAF-PAIS-------CGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 37 ~~~~L~~a~~~~~~SIAf-Paig-------tG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
+..-++.+.++|+++|.+ |... .|...+.++-..+-+++++++-..
T Consensus 71 l~~~~~~~~~lGi~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~rair~iK~~~p 124 (342)
T 1h7n_A 71 LKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFP 124 (342)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCCEEEEecccCccCCCCccccccCCCCChHHHHHHHHHHHCC
Confidence 444567778999999997 5433 366778888888888888876544
No 128
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}
Probab=26.89 E-value=1e+02 Score=22.51 Aligned_cols=43 Identities=7% Similarity=0.107 Sum_probs=27.8
Q ss_pred CceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
++.|||+++....... +..+.=-....+.++.|.+.+.+.+-+
T Consensus 168 ~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~ 211 (478)
T 4dqv_A 168 VDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTY 211 (478)
T ss_dssp CCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEE
T ss_pred CCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 6899999997543222 222223345677888888888876655
No 129
>2xz8_A Peptidoglycan-recognition protein LF; immune system, innate immunity, PGRP-LF; HET: PG4; 1.94A {Drosophila melanogaster}
Probab=26.83 E-value=1.2e+02 Score=19.25 Aligned_cols=29 Identities=7% Similarity=0.050 Sum_probs=17.2
Q ss_pred CCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 48 NIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 48 ~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
|..||.+..+| |.+. +..+++.+..+.-+
T Consensus 97 ~~~siGI~~iG------Pt~~-q~~al~~Li~~~v~ 125 (150)
T 2xz8_A 97 DADELVVAFIG------PSSS-NKKIALELIKQGIK 125 (150)
T ss_dssp CTTEEEEEESS------CCHH-HHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEC------CCHH-HHHHHHHHHHHHHH
Confidence 56888888887 5443 33445555555433
No 130
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Probab=26.46 E-value=1.6e+02 Score=20.25 Aligned_cols=43 Identities=19% Similarity=0.104 Sum_probs=27.4
Q ss_pred CceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
++.|||++|.....+....+.+. ..+++.++.+.+.+.+.+-+
T Consensus 71 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~vi 116 (303)
T 1o6z_A 71 SDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISL 116 (303)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEE
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 89999999965444432222222 45667777777777665555
No 131
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=26.28 E-value=1.4e+02 Score=19.63 Aligned_cols=52 Identities=6% Similarity=-0.006 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCC--Cc-ChHHHHHHHHHHHHHHHh
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVS--QY-PPDEAATIAISTVKEFAN 82 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~--g~-p~~~~a~~~~~~i~~~~~ 82 (96)
.+...+.++++++.|.+.|.+.|.++. |.|.+ +. +.++.-+.+.+.+.+..+
T Consensus 99 r~~~~~~~~~~i~~a~~lGa~~v~~~~-g~~~~~~~~p~~~~~~~~~~~~l~~l~~ 153 (287)
T 3kws_A 99 RKECMDTMKEIIAAAGELGSTGVIIVP-AFNGQVPALPHTMETRDFLCEQFNEMGT 153 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECS-CCTTCCSBCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEec-CcCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 355667888999999999999998852 22222 23 345555555555555443
No 132
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=26.20 E-value=1.6e+02 Score=20.03 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=26.2
Q ss_pred CCceEEEecCCCcCCCC--CcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHC--NPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++...... +..+.++ ....+.++.|.+.+.+.+-+
T Consensus 102 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~ 150 (352)
T 1sb8_A 102 GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTY 150 (352)
T ss_dssp TCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 47899999997421100 1111222 33457778888888887765
No 133
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*
Probab=26.19 E-value=25 Score=24.49 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEe-c--ccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 51 YIAF-P--AISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 51 SIAf-P--aigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
-||. | +||||..- + .+-++.+...|++++..
T Consensus 166 vIAYEPvWAIGTG~~A-t-~e~aqevh~~IR~~l~~ 199 (254)
T 3m9y_A 166 VIAYEPIWAIGTGKSS-T-SEDANEMCAFVRQTIAD 199 (254)
T ss_dssp EEEECCGGGCC--CCC-C-HHHHHHHHHHHHHHHHH
T ss_pred EEEECChhhhcCCCCC-C-HHHHHHHHHHHHHHHHH
Confidence 4666 7 89998762 4 44456677888888763
No 134
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=26.12 E-value=57 Score=21.39 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=21.6
Q ss_pred CceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEec
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 55 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfP 55 (96)
++.|||++++.+.. . -...++.++.|.+.|.+.+-+-
T Consensus 66 ~d~vi~~a~~~~~~------~-~~~~~~l~~a~~~~~~~~~v~~ 102 (286)
T 2zcu_A 66 VEKLLLISSSEVGQ------R-APQHRNVINAAKAAGVKFIAYT 102 (286)
T ss_dssp CSEEEECC---------------CHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEeCCCCchH------H-HHHHHHHHHHHHHcCCCEEEEE
Confidence 68999999875321 1 1245667777777788777663
No 135
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A
Probab=25.85 E-value=1.3e+02 Score=20.94 Aligned_cols=40 Identities=8% Similarity=-0.100 Sum_probs=23.6
Q ss_pred CCceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCC-Cc
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANN-IQ 50 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~-~~ 50 (96)
.|++|||++|.....+.+..+.+. ..+++.++.+.+.+ .+
T Consensus 83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~ 126 (329)
T 1b8p_A 83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRN 126 (329)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 489999999976544433222332 33556666666663 44
No 136
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Probab=25.33 E-value=1.7e+02 Score=20.18 Aligned_cols=55 Identities=18% Similarity=0.008 Sum_probs=31.0
Q ss_pred CceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374 12 VSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~ 73 (96)
++.|||++|.....+.+..+.+. ..+++.++.+.+.+ +.+-+ +..-|.+..+.++
T Consensus 75 aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vl------v~SNPv~~~t~~~ 132 (313)
T 1hye_A 75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIF------VITNPVDVMTYKA 132 (313)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEE------ECSSSHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEE------EecCcHHHHHHHH
Confidence 89999999965443332222222 34556666677776 54444 1224666555554
No 137
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=25.06 E-value=1.5e+02 Score=19.29 Aligned_cols=46 Identities=7% Similarity=-0.049 Sum_probs=30.5
Q ss_pred HHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 35 SAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 35 ~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
+.++++++.|.+.|.+.|.++... | ...|.++.-+.+.+.+.+..+
T Consensus 84 ~~~~~~i~~A~~lG~~~v~~~~~p-~-~~~~~~~~~~~~~~~l~~l~~ 129 (281)
T 3u0h_A 84 SLLPDRARLCARLGARSVTAFLWP-S-MDEEPVRYISQLARRIRQVAV 129 (281)
T ss_dssp HTHHHHHHHHHHTTCCEEEEECCS-E-ESSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeecC-C-CCCcchhhHHHHHHHHHHHHH
Confidence 457789999999999999865321 1 123455555666666666554
No 138
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=24.94 E-value=1.6e+02 Score=20.32 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+.+.+-...+-..+.-+|+.+|||..-.... .+.+.+++.+.+-+.+.++.
T Consensus 102 dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~~~--~~~~~aa~~~~~lv~~l~~~ 152 (251)
T 2phj_A 102 DITYSGTVSGAMEGRILGIPSIAFSAFGREN--IMFEEIAKVCVDIVKKVLNE 152 (251)
T ss_dssp GGGGCHHHHHHHHHHHTTCCEEEEEEECSSS--CCHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHcCCCeEEEEcCCCCc--cCHHHHHHHHHHHHHHHHhc
Confidence 4677777777778888999999997643222 25688888888888887763
No 139
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Probab=24.76 E-value=89 Score=19.35 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=9.6
Q ss_pred CCceEEEecCCC
Q 034374 11 PVSHVIHTVGPV 22 (96)
Q Consensus 11 ~~k~IiH~v~P~ 22 (96)
+.+.+||.+|..
T Consensus 66 ~id~vi~~ag~~ 77 (207)
T 2yut_A 66 PLDLLVHAVGKA 77 (207)
T ss_dssp SEEEEEECCCCC
T ss_pred CCCEEEECCCcC
Confidence 468999999864
No 140
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=24.41 E-value=1.6e+02 Score=19.42 Aligned_cols=52 Identities=12% Similarity=0.041 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCC-----CCcChHHHHHHHHHHHHHHHh
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGV-----SQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~-----~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.+...+.++++++.|.+.|.+.|..+. .+|. .+.+.++.-+.+.+.+.+..+
T Consensus 83 r~~~~~~~~~~i~~a~~lG~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 139 (294)
T 3vni_A 83 RKNAKAFYTDLLKRLYKLDVHLIGGAL-YSYWPIDYTKTIDKKGDWERSVESVREVAK 139 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEST-TSCSSCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeeccc-cCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345667888999999999999997532 2222 135667777777777776655
No 141
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=24.18 E-value=1.3e+02 Score=18.59 Aligned_cols=49 Identities=8% Similarity=0.080 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.+.|.+.+|..++-|...|.+.+.+-.|+. .|--+..+-+.+++.+-.+
T Consensus 14 ~E~l~n~fRk~fkD~R~~GskKvviNvis~----~~y~e~v~~~REAiLDNID 62 (126)
T 2rbg_A 14 NDNFENYFRKIFLDVRSSGSKKTTINVFTE----IQYQELVTLIREALLENID 62 (126)
T ss_dssp GGGHHHHHHHHHHHHHHHTCSEEEEEEECS----SCHHHHHHHTHHHHHHTTT
T ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEEecC----CcHHHHHHHHHHHHHhccc
Confidence 357999999999999999999999988887 6667888888888776443
No 142
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=24.09 E-value=1.4e+02 Score=20.16 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=26.0
Q ss_pred CCceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++|+.......+.+ ++ ....+.++.|.+.+.+.|-+
T Consensus 88 ~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~~iV~ 133 (330)
T 2pzm_A 88 KPTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVKRLLN 133 (330)
T ss_dssp CCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 578999999975432111111 22 33456777777778877665
No 143
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=22.87 E-value=68 Score=14.71 Aligned_cols=15 Identities=13% Similarity=0.479 Sum_probs=3.4
Q ss_pred ccCCCCcChHHHHHH
Q 034374 58 SCGVSQYPPDEAATI 72 (96)
Q Consensus 58 gtG~~g~p~~~~a~~ 72 (96)
|+|..+|+..+.-+.
T Consensus 3 gsgvtrfdekqieel 17 (31)
T 4h62_V 3 GSGVTRFDEKQIEEL 17 (31)
T ss_dssp -------CHHHHHHH
T ss_pred CCccccccHHHHHHH
Confidence 344445554444333
No 144
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=22.83 E-value=1.8e+02 Score=19.47 Aligned_cols=44 Identities=9% Similarity=0.005 Sum_probs=22.2
Q ss_pred CCceEEEecCCCcC--CCC-CcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFN--FHC-NPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~--~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++.-. ... ...+.=-....+.++.|.+.+.+.+-+
T Consensus 77 ~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~ 123 (342)
T 2x4g_A 77 GLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILY 123 (342)
T ss_dssp TCSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEE
T ss_pred CCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 37899999986421 111 111122334567778888778776665
No 145
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=22.56 E-value=72 Score=21.42 Aligned_cols=43 Identities=9% Similarity=-0.122 Sum_probs=23.5
Q ss_pred CceEEEecCCCcCCC--CCcHHHHH---HHHHHHHHhHHhCCC-cEEEe
Q 034374 12 VSHVIHTVGPVFNFH--CNPEDILR---SAYKNCLSVGKANNI-QYIAF 54 (96)
Q Consensus 12 ~k~IiH~v~P~~~~~--~~~~~~L~---~~~~~~L~~a~~~~~-~SIAf 54 (96)
.+.|||++|+..... .+..+.++ ....+.++.|.+.+. +.+-+
T Consensus 76 ~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~ 124 (345)
T 2z1m_A 76 PDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQ 124 (345)
T ss_dssp CSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 589999999753210 11121222 234566777777675 55544
No 146
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=22.39 E-value=2.1e+02 Score=20.17 Aligned_cols=49 Identities=4% Similarity=-0.152 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccccCCCC------cChHHHHHHHHHHHHHHHh
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ------YPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g------~p~~~~a~~~~~~i~~~~~ 82 (96)
+.-.+-++++++.|.+.|.+.|.+.. |..| .+.++.-+.+.+.+.+..+
T Consensus 112 ~~~i~~~~~~i~~A~~LGa~~vvv~~---g~~~~~~~~~~~~~~~~~~~~e~L~~l~~ 166 (386)
T 1muw_A 112 RYALRKTIRNIDLAVELGAKTYVAWG---GREGAESGAAKDVRVALDRMKEAFDLLGE 166 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEECC---TTCEESSTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECC---CCCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 44456788999999999999998742 3322 3455666666666666554
No 147
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=22.20 E-value=1.7e+02 Score=19.19 Aligned_cols=43 Identities=12% Similarity=0.025 Sum_probs=28.0
Q ss_pred CCceEEEecCCCc-----CCCCCcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVF-----NFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~-----~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||+++... .......+ =-....+.++.|.+.+.+.+-+
T Consensus 69 ~~d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~ 116 (321)
T 3vps_A 69 DVRLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVV 116 (321)
T ss_dssp TEEEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEE
Confidence 4689999998642 21112222 3344678888888888887776
No 148
>2kzq_A Envelope glycoprotein E2 peptide; membrane protein, E2 structural protein, HCV; NMR {Hepatitis c virus}
Probab=21.93 E-value=18 Score=17.82 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=8.5
Q ss_pred EecccccCCCCc
Q 034374 53 AFPAISCGVSQY 64 (96)
Q Consensus 53 AfPaigtG~~g~ 64 (96)
.+|+++||..+.
T Consensus 2 ~~palstGliHl 13 (36)
T 2kzq_A 2 DLPALSTGLLHL 13 (36)
T ss_dssp CCSCCCCHHHHH
T ss_pred Ccchhhccceeh
Confidence 369999986543
No 149
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=21.90 E-value=1.7e+02 Score=19.05 Aligned_cols=52 Identities=13% Similarity=-0.052 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEecccc-cCC----CCcChHHHHHHHHHHHHHHHh
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAFPAIS-CGV----SQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAfPaig-tG~----~g~p~~~~a~~~~~~i~~~~~ 82 (96)
+.-.+.++++++.|.+.|.+.|..|.-+ .|. .+.+.++.-+.+.+.+.+..+
T Consensus 84 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~ 140 (290)
T 2qul_A 84 DAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIK 140 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHH
Confidence 4455788899999999999999865421 132 233556666666666665544
No 150
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Probab=21.63 E-value=1.8e+02 Score=19.19 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCceEEEecCCCcCCCC-CcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHC-NPEDILR---SAYKNCLSVGKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~-~~~~~L~---~~~~~~L~~a~~~~~~SIAf 54 (96)
.++.|||++++...... +..+.++ ....+.++.|.+.+.+.+-+
T Consensus 62 ~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~ 109 (317)
T 3ajr_A 62 SIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVI 109 (317)
T ss_dssp TCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEE
Confidence 57899999987421100 1111222 23457778888888877765
No 151
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=21.46 E-value=91 Score=19.81 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=31.9
Q ss_pred HhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHh
Q 034374 45 KANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 82 (96)
Q Consensus 45 ~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~ 82 (96)
.+.|-=|+.+|-+.-=..|=..+++.+-+++.+++|.+
T Consensus 59 ~EdGs~t~~l~eldi~~~g~T~eeA~~~li~~l~eYAe 96 (139)
T 3k6q_A 59 KEDGIIIGTIDGFDLVVSGESEQEVIQKLAEDLLEYAQ 96 (139)
T ss_dssp EETTEEEEEETTTCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ecCCeEEEEecCceeEeeCCCHHHHHHHHHHHHHHHHH
Confidence 34777788888887777778899999999999999876
No 152
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=20.99 E-value=69 Score=22.06 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=19.0
Q ss_pred EecccccCCCCcChHHHHHHHHHHH
Q 034374 53 AFPAISCGVSQYPPDEAATIAISTV 77 (96)
Q Consensus 53 AfPaigtG~~g~p~~~~a~~~~~~i 77 (96)
-+|.||-|..+.+.+++.+++-.++
T Consensus 12 ~vp~iGlGtw~~~~~~a~~~i~~Al 36 (324)
T 4gac_A 12 KMPLIGLGTWKSEPGQVKAAIKHAL 36 (324)
T ss_dssp EEESBCEECTTCCHHHHHHHHHHHH
T ss_pred EeccceeECCCCCHHHHHHHHHHHH
Confidence 3789999988888888776655554
No 153
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=20.60 E-value=2e+02 Score=21.17 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=23.8
Q ss_pred CCceEEEecCCCcCCCC--CcHHHHH----HHHHHHHHh-HHhCCCcEEEe
Q 034374 11 PVSHVIHTVGPVFNFHC--NPEDILR----SAYKNCLSV-GKANNIQYIAF 54 (96)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L~----~~~~~~L~~-a~~~~~~SIAf 54 (96)
.++.|||++++...... +..+.+. ....+.++. +.+.+.+.+-+
T Consensus 201 ~~D~Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~ 251 (516)
T 3oh8_A 201 GADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMIS 251 (516)
T ss_dssp TCSEEEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEE
T ss_pred CCCEEEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 37899999997532211 1122222 235567776 56677776665
No 154
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=20.47 E-value=1.3e+02 Score=16.89 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEEe-cccccCCCCcChHHHHHHHHHHHHHHHhcCCceE
Q 034374 31 DILRSAYKNCLSVGKANNIQYIAF-PAISCGVSQYPPDEAATIAISTVKEFANDFKEVS 88 (96)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~SIAf-PaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~ 88 (96)
+.-...+.+-|..|...|++.|-+ .=-|+| +.-+.+.+|+++++.|.
T Consensus 15 ~eA~~~l~~fl~~a~~~g~~~v~IIHGkG~G-----------vLr~~V~~~L~~~~~V~ 62 (83)
T 2zqe_A 15 AEALLEVDQALEEARALGLSTLRLLHGKGTG-----------ALRQAIREALRRDKRVE 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCSTTS-----------HHHHHHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCch-----------HHHHHHHHHHhcCCcee
Confidence 445567777788889999998877 333333 67788999999877664
No 155
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=20.28 E-value=1.5e+02 Score=19.42 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=16.7
Q ss_pred HHHHhHHhCCCcEEEeccccc
Q 034374 39 NCLSVGKANNIQYIAFPAISC 59 (96)
Q Consensus 39 ~~L~~a~~~~~~SIAfPaigt 59 (96)
..++.|.+.|++.|++.-=.+
T Consensus 20 e~v~~A~~~Gl~~iaiTDH~~ 40 (267)
T 2yxo_A 20 AYLEEARAKGLKGVVFTDHSP 40 (267)
T ss_dssp HHHHHHHHTTCSEEEEEEECC
T ss_pred HHHHHHHHcCCCEEEEcCCCC
Confidence 567889999999999955433
No 156
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=20.02 E-value=92 Score=22.64 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=27.2
Q ss_pred HHHHHHhHHhCCCcEEEe-cccc------cCCCCcChHHHHHHHHHHHHHHHhc
Q 034374 37 YKNCLSVGKANNIQYIAF-PAIS------CGVSQYPPDEAATIAISTVKEFAND 83 (96)
Q Consensus 37 ~~~~L~~a~~~~~~SIAf-Paig------tG~~g~p~~~~a~~~~~~i~~~~~~ 83 (96)
+..-++.+.++|+++|.+ |.-. .|...+.++-..+-+++++++-..+
T Consensus 61 l~~~~~~~~~~Gi~~v~LFgvp~~~~Kd~~gs~A~~~~g~v~~air~iK~~~pd 114 (330)
T 1pv8_A 61 LEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPN 114 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEEECC--------------CCSHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHCCCCEEEEecCCcccCCCccccccCCCCChHHHHHHHHHHHCCC
Confidence 344566778899999987 4322 2556677777777777777765443
Done!