BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034377
MQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASG
STKPTYLRFLTGVKAYSQIFSRIAFGARRNRYILED

High Scoring Gene Products

Symbol, full name Information P value
NOL
NYC1-like
protein from Arabidopsis thaliana 9.9e-39
NOL
Chlorophyll(ide) b reductase NOL, chloroplastic
protein from Oryza sativa Japonica Group 4.4e-36
NYC1
NON-YELLOW COLORING 1
protein from Arabidopsis thaliana 5.2e-07
NYC1
Probable chlorophyll(ide) b reductase NYC1, chloroplastic
protein from Oryza sativa Japonica Group 6.9e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034377
        (96 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2175254 - symbol:NOL "NYC1-like" species:3702 ...   414  9.9e-39   1
UNIPROTKB|Q84ST4 - symbol:NOL "Chlorophyll(ide) b reducta...   389  4.4e-36   1
TAIR|locus:2119330 - symbol:NYC1 "NON-YELLOW COLORING 1" ...   124  5.2e-07   1
UNIPROTKB|Q5N800 - symbol:NYC1 "Probable chlorophyll(ide)...   123  6.9e-07   1


>TAIR|locus:2175254 [details] [associations]
            symbol:NOL "NYC1-like" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008152 "metabolic process" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0016491 "oxidoreductase
            activity" evidence=IEA;ISS] [GO:0010304 "PSII associated
            light-harvesting complex II catabolic process" evidence=TAS]
            [GO:0015996 "chlorophyll catabolic process" evidence=IDA]
            [GO:0034256 "chlorophyll(ide) b reductase activity" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR002198
            InterPro:IPR020904 Pfam:PF00106 PRINTS:PR00080 PROSITE:PS00061
            InterPro:IPR016040 InterPro:IPR002347 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009507 GO:GO:0000166
            Gene3D:3.40.50.720 PRINTS:PR00081 EMBL:AB005245 GO:GO:0009535
            GO:GO:0015996 eggNOG:COG4221 GO:GO:0010304 EMBL:AB255027
            EMBL:AY085229 EMBL:BT025238 IPI:IPI00539901 RefSeq:NP_568145.1
            UniGene:At.33057 ProteinModelPortal:Q8LEU3 SMR:Q8LEU3 STRING:Q8LEU3
            PaxDb:Q8LEU3 PRIDE:Q8LEU3 EnsemblPlants:AT5G04900.1 GeneID:830372
            KEGG:ath:AT5G04900 TAIR:At5g04900 HOGENOM:HOG000148138
            InParanoid:Q8LEU3 KO:K13606 OMA:ETCTTNL PhylomeDB:Q8LEU3
            ProtClustDB:CLSN2689468 BioCyc:MetaCyc:AT5G04900-MONOMER
            Genevestigator:Q8LEU3 GO:GO:0034256 Uniprot:Q8LEU3
        Length = 348

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 80/96 (83%), Positives = 90/96 (93%)

Query:     1 MQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASG 60
             MQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPA+VVAE LVP IR+I ASG
Sbjct:   253 MQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAEYLVPNIRAIPASG 312

Query:    61 STKPTYLRFLTGVKAYSQIFSRIAFGARRNRYILED 96
             S KPTY+RFLTG+KAY++IFSR+A GAR+NRY+ E+
Sbjct:   313 SMKPTYIRFLTGIKAYTKIFSRVALGARKNRYVTEE 348


>UNIPROTKB|Q84ST4 [details] [associations]
            symbol:NOL "Chlorophyll(ide) b reductase NOL,
            chloroplastic" species:39947 "Oryza sativa Japonica Group"
            [GO:0034256 "chlorophyll(ide) b reductase activity" evidence=IDA]
            InterPro:IPR002198 InterPro:IPR020904 Pfam:PF00106 PRINTS:PR00080
            PROSITE:PS00061 InterPro:IPR016040 InterPro:IPR002347 GO:GO:0000166
            Gene3D:3.40.50.720 EMBL:DP000009 eggNOG:COG1028 PRINTS:PR00081
            GO:GO:0009535 EMBL:CM000140 GO:GO:0015996 GO:GO:0034256
            EMBL:AB255026 EMBL:AC120535 EMBL:AC138004 ProteinModelPortal:Q84ST4
            STRING:Q84ST4 KEGG:dosa:Os03t0654600-01 Gramene:Q84ST4
            HOGENOM:HOG000120770 Uniprot:Q84ST4
        Length = 343

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 75/96 (78%), Positives = 87/96 (90%)

Query:     1 MQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASG 60
             M +V NV+VHNLSPGMVTTDLLMSGATTKQAKFFIN+LAEPA+VVA+ LVP IR+I  + 
Sbjct:   248 MNEVNNVMVHNLSPGMVTTDLLMSGATTKQAKFFINILAEPANVVADYLVPNIRAIPTNQ 307

Query:    61 STKPTYLRFLTGVKAYSQIFSRIAFGARRNRYILED 96
             S KPTY+RFLTG+KAYS+IFSRIAFGARRN+Y+ ED
Sbjct:   308 SMKPTYIRFLTGLKAYSRIFSRIAFGARRNKYVAED 343


>TAIR|locus:2119330 [details] [associations]
            symbol:NYC1 "NON-YELLOW COLORING 1" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISM;IC] [GO:0016491
            "oxidoreductase activity" evidence=IEA;ISS] [GO:0010304 "PSII
            associated light-harvesting complex II catabolic process"
            evidence=IMP] [GO:0015996 "chlorophyll catabolic process"
            evidence=IMP] [GO:0034256 "chlorophyll(ide) b reductase activity"
            evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR002198 Pfam:PF00106 PROSITE:PS00061 InterPro:IPR016040
            InterPro:IPR002347 GO:GO:0016021 GO:GO:0009507 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0000166 Gene3D:3.40.50.720
            eggNOG:COG1028 PRINTS:PR00081 GO:GO:0009535 EMBL:AL049751
            EMBL:AL161535 GO:GO:0015996 GO:GO:0042170 GO:GO:0010304 KO:K13606
            GO:GO:0034256 EMBL:AB255028 EMBL:AY057697 IPI:IPI00530057
            PIR:T07705 RefSeq:NP_567400.1 UniGene:At.3267
            ProteinModelPortal:Q93ZA0 SMR:Q93ZA0 STRING:Q93ZA0 ProMEX:Q93ZA0
            EnsemblPlants:AT4G13250.1 GeneID:826942 KEGG:ath:AT4G13250
            TAIR:At4g13250 HOGENOM:HOG000005933 InParanoid:Q93ZA0 OMA:EMYTENT
            PhylomeDB:Q93ZA0 ProtClustDB:CLSN2689409
            BioCyc:MetaCyc:AT4G13250-MONOMER Genevestigator:Q93ZA0
            Uniprot:Q93ZA0
        Length = 496

 Score = 124 (48.7 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query:     6 NVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASG 60
             NV +H  SPGMV T+LL+SG++ K  + F N++ E  + VA  LVP++R +  SG
Sbjct:   352 NVGLHTASPGMVLTELLLSGSSIKNKQMF-NIICELPETVARTLVPRMRVVKGSG 405


>UNIPROTKB|Q5N800 [details] [associations]
            symbol:NYC1 "Probable chlorophyll(ide) b reductase NYC1,
            chloroplastic" species:39947 "Oryza sativa Japonica Group"
            [GO:0009536 "plastid" evidence=IDA] [GO:0010304 "PSII associated
            light-harvesting complex II catabolic process" evidence=IMP]
            [GO:0015996 "chlorophyll catabolic process" evidence=IMP]
            [GO:0016491 "oxidoreductase activity" evidence=IDA] [GO:0042170
            "plastid membrane" evidence=RCA] InterPro:IPR002198 Pfam:PF00106
            PROSITE:PS00061 InterPro:IPR016040 InterPro:IPR002347 GO:GO:0016021
            GO:GO:0009536 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0016491
            eggNOG:COG1028 PRINTS:PR00081 GO:GO:0009535 EMBL:AP008207
            EMBL:CM000138 GO:GO:0015996 GO:GO:0010304 KO:K13606 GO:GO:0034256
            OMA:EMYTENT ProtClustDB:CLSN2689409 EMBL:AB255025 EMBL:AP002900
            EMBL:AP003434 EMBL:AK068523 RefSeq:NP_001042468.1 UniGene:Os.18818
            ProteinModelPortal:Q5N800 STRING:Q5N800 PRIDE:Q5N800 GeneID:4327178
            KEGG:osa:4327178 Gramene:Q5N800 Uniprot:Q5N800
        Length = 504

 Score = 123 (48.4 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query:     7 VVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASGSTKPTY 66
             V VH  SPGMV TDLL+SG++ +  + F N++ E  + VA  LVP++R +  SG      
Sbjct:   362 VGVHTASPGMVLTDLLLSGSSLRNKQMF-NLICELPETVARTLVPRMRVVKGSGKA---- 416

Query:    67 LRFLTGVKAYSQIFSRIAFGARRNRYILED 96
             + +LT  +    + + +    RR R+  E+
Sbjct:   417 INYLTPPRI---LLALVTAWVRRGRWFDEE 443


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.134   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        96   0.00091  102 3  11 22  0.46    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  483 (51 KB)
  Total size of DFA:  86 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.88u 0.27s 10.15t   Elapsed:  00:00:01
  Total cpu time:  9.88u 0.27s 10.15t   Elapsed:  00:00:01
  Start:  Mon May 20 16:20:40 2013   End:  Mon May 20 16:20:41 2013

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