BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034377
         (96 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LEU3|NOL_ARATH Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis
           thaliana GN=NOL PE=2 SV=1
          Length = 348

 Score =  172 bits (436), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 80/96 (83%), Positives = 90/96 (93%)

Query: 1   MQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASG 60
           MQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPA+VVAE LVP IR+I ASG
Sbjct: 253 MQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAEYLVPNIRAIPASG 312

Query: 61  STKPTYLRFLTGVKAYSQIFSRIAFGARRNRYILED 96
           S KPTY+RFLTG+KAY++IFSR+A GAR+NRY+ E+
Sbjct: 313 SMKPTYIRFLTGIKAYTKIFSRVALGARKNRYVTEE 348


>sp|Q84ST4|NOL_ORYSJ Chlorophyll(ide) b reductase NOL, chloroplastic OS=Oryza sativa
           subsp. japonica GN=NOL PE=1 SV=1
          Length = 343

 Score =  160 bits (406), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/96 (78%), Positives = 87/96 (90%)

Query: 1   MQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASG 60
           M +V NV+VHNLSPGMVTTDLLMSGATTKQAKFFIN+LAEPA+VVA+ LVP IR+I  + 
Sbjct: 248 MNEVNNVMVHNLSPGMVTTDLLMSGATTKQAKFFINILAEPANVVADYLVPNIRAIPTNQ 307

Query: 61  STKPTYLRFLTGVKAYSQIFSRIAFGARRNRYILED 96
           S KPTY+RFLTG+KAYS+IFSRIAFGARRN+Y+ ED
Sbjct: 308 SMKPTYIRFLTGLKAYSRIFSRIAFGARRNKYVAED 343


>sp|Q93ZA0|NYC1_ARATH Probable chlorophyll(ide) b reductase NYC1, chloroplastic
           OS=Arabidopsis thaliana GN=NYC1 PE=1 SV=1
          Length = 496

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 6   NVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASG 60
           NV +H  SPGMV T+LL+SG++ K  + F N++ E  + VA  LVP++R +  SG
Sbjct: 352 NVGLHTASPGMVLTELLLSGSSIKNKQMF-NIICELPETVARTLVPRMRVVKGSG 405


>sp|Q5N800|NYC1_ORYSJ Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza
           sativa subsp. japonica GN=NYC1 PE=1 SV=1
          Length = 504

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 8/90 (8%)

Query: 7   VVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASGSTKPTY 66
           V VH  SPGMV TDLL+SG++ +  + F N++ E  + VA  LVP++R +  SG      
Sbjct: 362 VGVHTASPGMVLTDLLLSGSSLRNKQMF-NLICELPETVARTLVPRMRVVKGSGKA---- 416

Query: 67  LRFLTGVKAYSQIFSRIAFGARRNRYILED 96
           + +LT  +    + + +    RR R+  E+
Sbjct: 417 INYLTPPRI---LLALVTAWVRRGRWFDEE 443


>sp|O86565|GLYA_STRCO Serine hydroxymethyltransferase OS=Streptomyces coelicolor (strain
           ATCC BAA-471 / A3(2) / M145) GN=glyA PE=3 SV=1
          Length = 420

 Score = 30.0 bits (66), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%)

Query: 5   KNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASGSTK 63
           +N V ++  P MVT+ L +         F     AE ADV+AE L P   + A     K
Sbjct: 348 RNAVPNDPRPPMVTSGLRIGTPALATRGFTAEDFAEVADVIAEALKPSYDAEALKARVK 406


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,115,718
Number of Sequences: 539616
Number of extensions: 982033
Number of successful extensions: 2223
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2217
Number of HSP's gapped (non-prelim): 5
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)