BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034378
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FHI|A Chain A, Substrate Analog (Ib2) Complex With The Fragile Histidine
Triad Protein, Fhit
pdb|4FIT|A Chain A, Fhit-Apo
pdb|6FIT|A Chain A, Fhit-Transition State Analog
Length = 147
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 50/78 (64%)
Query: 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVP 69
G + P R RF DL DE DL+ T Q VGT +E + +SL F++QDGP+AGQTV
Sbjct: 34 GHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVK 93
Query: 70 HVHIHIVPRKAASSEEND 87
HVH+H++PRKA ND
Sbjct: 94 HVHVHVLPRKAGDFHRND 111
>pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With
AdenosineSULFATE AMP ANALOG
pdb|1FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|2FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|5FIT|A Chain A, Fhit-Substrate Analog
Length = 147
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 49/78 (62%)
Query: 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVP 69
G + P R RF DL DE DL+ T Q VGT +E + +SL F+ QDGP+AGQTV
Sbjct: 34 GHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSXQDGPEAGQTVK 93
Query: 70 HVHIHIVPRKAASSEEND 87
HVH+H++PRKA ND
Sbjct: 94 HVHVHVLPRKAGDFHRND 111
>pdb|2FHI|A Chain A, Substrate Analog (Ib2) Complex With The His 96 Asn
Substitution Of The Fragile Histidine Triad Protein,
Fhit
Length = 147
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 50/78 (64%)
Query: 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVP 69
G + P R RF DL DE DL+ T Q VGT +E + +SL F++QDGP+AGQTV
Sbjct: 34 GHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVK 93
Query: 70 HVHIHIVPRKAASSEEND 87
HV++H++PRKA ND
Sbjct: 94 HVNVHVLPRKAGDFHRND 111
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%)
Query: 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVP 69
G + P+R R DLT ET DL++ A+ V LE +H +S +QDG AGQTVP
Sbjct: 330 GHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVP 389
Query: 70 HVHIHIVPRKAASSEEND 87
HVHIHI+PR+A +N+
Sbjct: 390 HVHIHILPRRAGDFGDNE 407
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%)
Query: 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQ 63
I Q G + P+ ++T + +L+ + L+ KA L +
Sbjct: 65 ISQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQKATKADGLNIINNNEET 124
Query: 64 AGQTVPHVHIHIVPRKAASSE 84
AGQTV H H+H+VPR A S E
Sbjct: 125 AGQTVFHAHVHLVPRFADSDE 145
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 46 ESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRK 79
ES A AI DG A QTV H+H+H+VPR+
Sbjct: 77 ESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRR 110
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 59 QDGPQAGQTVPHVHIHIVPRKAASSEENDG 88
+G +AGQTV H H+H++PR ENDG
Sbjct: 93 NNGEKAGQTVFHFHLHLIPRYG----ENDG 118
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 8 AFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQT 67
+ G + P++ + + D +L + V ++ KA L G AGQ
Sbjct: 32 SLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQV 91
Query: 68 VPHVHIHIVP 77
+ H+H+HI+P
Sbjct: 92 IFHLHVHIIP 101
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 59 QDGPQAGQTVPHVHIHIVPRKAASSEENDGNVSWD 93
+G A Q VPHVH HI+P+ + E+ + WD
Sbjct: 95 NNGSLAHQEVPHVHFHIIPK---TDEKTGLKIGWD 126
>pdb|3ANO|A Chain A, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
pdb|3ANO|B Chain B, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
Length = 218
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 7 YAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQ 66
Y G + P R DLT E+ +L Q +++ + + G AG
Sbjct: 102 YNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNVGLNLGTSAGG 161
Query: 67 TVP-HVHIHIVPR 78
++ H+H+H+VPR
Sbjct: 162 SLAEHLHVHVVPR 174
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 59 QDGPQAGQTVPHVHIHIVPR 78
+G +AGQ+V H H+HI+PR
Sbjct: 89 NNGEKAGQSVFHYHMHIIPR 108
>pdb|3I4S|A Chain A, Crystal Structure Of Histidine Triad Protein Blr8122 From
Bradyrhizobium Japonicum
pdb|3I4S|B Chain B, Crystal Structure Of Histidine Triad Protein Blr8122 From
Bradyrhizobium Japonicum
Length = 149
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 16 PRR-DAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIH 74
PRR DAV DL + L V L+ K L A G VP +H+H
Sbjct: 44 PRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA-----ALGNLVPQLHVH 98
Query: 75 IVPRKAASS 83
I+ R+ +
Sbjct: 99 IIARRTGDA 107
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 9 FGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV 68
+G +P A++ G L ADE + + +E+ HKA A+ GP GQ +
Sbjct: 164 YGKPNPEPYLMALKKGGLKADEA----VVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVL 219
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 9 FGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV 68
+G +P A++ G L ADE + + +E+ HKA A+ GP GQ +
Sbjct: 164 YGKPNPEPYLMALKKGGLKADEA----VVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVL 219
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 9 FGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV 68
+G +P A++ G L ADE + + +E+ HKA A+ GP GQ +
Sbjct: 164 YGKPNPEPYLMALKKGGLKADEA----VVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVL 219
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 9 FGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV 68
+G +P A++ G L ADE + + +E+ HKA A+ GP GQ +
Sbjct: 164 YGKPNPEPYLMALKKGGLKADEA----VVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVL 219
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 9 FGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV 68
+G +P A++ G L ADE + + +E+ HKA A+ GP GQ +
Sbjct: 164 YGKPNPEPYLMALKKGGLKADEA----VVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVL 219
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 9 FGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV 68
+G +P A++ G L ADE + + +E+ HKA A+ GP GQ +
Sbjct: 164 YGKPNPEPYLMALKKGGLKADEA----VVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVL 219
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 9 FGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV 68
+G +P A++ G L ADE + + +E+ HKA A+ GP GQ +
Sbjct: 164 YGKPNPEPYLMALKKGGLKADEA----VVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVL 219
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGP 62
+IE G + PR + + D+ + + +Q +G + + I
Sbjct: 33 TIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGLII---- 88
Query: 63 QAGQTVPHVHIHIVPRKAAS 82
AG VPH+H+H+ P ++ S
Sbjct: 89 -AGLEVPHLHVHVFPTRSLS 107
>pdb|2GU1|A Chain A, Crystal Structure Of A Zinc Containing Peptidase From
Vibrio Cholerae
Length = 361
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 44 QLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEENDGNVSWDF 94
QL+ L + D Q + + H+ I KA + ENDG+ S+DF
Sbjct: 44 QLDMIQPGEELELMMDDMGQLSRLIYHMSI---VEKAIYTRENDGSFSYDF 91
>pdb|2Y0N|A Chain A, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|B Chain B, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|C Chain C, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|D Chain D, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
Length = 211
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 32 RDLWLTAQT-VGTQLESY--HKASSLAFAIQDGPQAGQTVPH--VHIHIVPRKA---ASS 83
R + L QT + T LESY H A + AF+ + P+ +PH +++H +P +
Sbjct: 32 RLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAEKNVDLCK 91
Query: 84 EENDG-NVSWDF 94
E DG +++D+
Sbjct: 92 EMVDGLRITFDY 103
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 61 GPQAGQTVPHVHIHIVPRK 79
G AGQTV H+H HI+ K
Sbjct: 92 GEDAGQTVKHIHFHILGGK 110
>pdb|3O44|A Chain A, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|B Chain B, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|C Chain C, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|D Chain D, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|E Chain E, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|F Chain F, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|G Chain G, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|H Chain H, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|I Chain I, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|J Chain J, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|K Chain K, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|L Chain L, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|M Chain M, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
pdb|3O44|N Chain N, Crystal Structure Of The Vibrio Cholerae Cytolysin
(Hlya) Heptameric Pore
Length = 593
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 66 QTVPHVHIHIVPRKAASSEENDGNVSW 92
T+PHV +I +A S EE N SW
Sbjct: 14 NTLPHVAFYISVNRAISDEECTFNNSW 40
>pdb|1XEZ|A Chain A, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Pro-Toxin With Octylglucoside Bound
Length = 721
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 66 QTVPHVHIHIVPRKAASSEENDGNVSW 92
T+PHV +I +A S EE N SW
Sbjct: 142 NTLPHVAFYISVNRAISDEECTFNNSW 168
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 66 QTVPHVHIHIVPR 78
QTV H+H HI+PR
Sbjct: 119 QTVYHLHFHIIPR 131
>pdb|2OIK|A Chain A, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|B Chain B, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|C Chain C, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|D Chain D, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
Length = 154
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 65 GQTVPHVHIHIVPR 78
G PHVH H++PR
Sbjct: 91 GNXTPHVHWHVIPR 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,933,787
Number of Sequences: 62578
Number of extensions: 92768
Number of successful extensions: 248
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 39
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)