Query 034378
Match_columns 96
No_of_seqs 152 out of 1086
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 12:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0537 Hit Diadenosine tetrap 100.0 2.4E-28 5.2E-33 156.9 10.0 84 3-86 29-112 (138)
2 KOG3379 Diadenosine polyphosph 99.9 7E-28 1.5E-32 152.2 8.3 89 3-91 31-119 (150)
3 cd01275 FHIT FHIT (fragile his 99.9 4.9E-27 1.1E-31 148.2 10.5 84 3-86 28-111 (126)
4 PF01230 HIT: HIT domain; Int 99.9 2E-27 4.3E-32 144.2 7.9 78 3-80 20-97 (98)
5 cd01277 HINT_subgroup HINT (hi 99.9 3.4E-26 7.4E-31 139.2 9.2 76 3-78 28-103 (103)
6 cd00468 HIT_like HIT family: H 99.9 3.9E-25 8.3E-30 130.5 8.9 75 3-77 12-86 (86)
7 PRK10687 purine nucleoside pho 99.9 3.1E-25 6.7E-30 139.3 8.8 80 3-82 31-111 (119)
8 cd01276 PKCI_related Protein K 99.9 1.3E-23 2.9E-28 128.2 7.9 75 3-78 28-104 (104)
9 PLN02643 ADP-glucose phosphory 99.9 2.3E-21 5.1E-26 139.6 9.6 90 3-92 223-318 (336)
10 TIGR00209 galT_1 galactose-1-p 99.8 3.3E-21 7.1E-26 139.4 8.6 90 3-93 224-325 (347)
11 KOG3275 Zinc-binding protein o 99.8 4.8E-21 1E-25 118.3 8.0 77 4-83 45-124 (127)
12 PRK11720 galactose-1-phosphate 99.8 8.2E-21 1.8E-25 137.3 8.9 88 3-91 224-323 (346)
13 cd01278 aprataxin_related apra 99.8 2.6E-20 5.6E-25 113.8 8.5 72 3-76 30-103 (104)
14 cd00608 GalT Galactose-1-phosp 99.8 2.4E-20 5.1E-25 134.1 8.7 90 3-92 214-315 (329)
15 PF02744 GalP_UDP_tr_C: Galact 99.3 1.6E-11 3.4E-16 81.1 8.3 69 7-75 47-119 (166)
16 KOG2958 Galactose-1-phosphate 99.3 6.7E-12 1.5E-16 88.6 4.5 89 7-95 233-331 (354)
17 PF11969 DcpS_C: Scavenger mRN 99.2 2.1E-11 4.6E-16 76.1 6.0 72 3-78 28-104 (116)
18 COG1085 GalT Galactose-1-phosp 99.2 6.7E-11 1.4E-15 85.3 7.7 86 6-91 218-314 (338)
19 PF04677 CwfJ_C_1: Protein sim 99.0 4.2E-09 9.2E-14 66.3 8.9 73 1-80 38-110 (121)
20 KOG4359 Protein kinase C inhib 99.0 1.6E-09 3.4E-14 69.3 6.4 88 3-94 61-151 (166)
21 KOG2476 Uncharacterized conser 98.0 6.5E-05 1.4E-09 56.5 8.4 72 3-80 347-418 (528)
22 PLN03103 GDP-L-galactose-hexos 97.4 0.00063 1.4E-08 50.6 6.6 64 3-77 176-241 (403)
23 KOG2477 Uncharacterized conser 97.3 0.0016 3.6E-08 49.7 8.0 76 1-80 434-509 (628)
24 KOG3969 Uncharacterized conser 97.3 0.0025 5.3E-08 45.4 8.3 66 11-80 190-258 (310)
25 cd00608 GalT Galactose-1-phosp 97.2 0.0014 3.1E-08 47.4 6.8 67 11-77 95-161 (329)
26 PLN02643 ADP-glucose phosphory 97.2 0.0017 3.6E-08 47.3 7.1 68 10-77 108-175 (336)
27 COG1085 GalT Galactose-1-phosp 96.8 0.0074 1.6E-07 44.1 7.3 67 11-77 96-162 (338)
28 PRK11720 galactose-1-phosphate 96.8 0.0064 1.4E-07 44.5 7.1 66 10-77 106-171 (346)
29 COG4360 APA2 ATP adenylyltrans 96.6 0.0068 1.5E-07 42.5 5.3 66 3-79 99-164 (298)
30 TIGR00209 galT_1 galactose-1-p 96.1 0.037 8E-07 40.6 7.3 66 10-77 106-171 (347)
31 PF01087 GalP_UDP_transf: Gala 96.0 0.034 7.3E-07 37.1 6.2 67 11-77 112-178 (183)
32 TIGR00672 cdh CDP-diacylglycer 95.8 0.028 6E-07 39.5 5.4 69 6-76 69-143 (250)
33 PF02611 CDH: CDP-diacylglycer 95.7 0.026 5.5E-07 39.1 4.7 69 6-76 41-115 (222)
34 PRK05471 CDP-diacylglycerol py 95.5 0.039 8.4E-07 38.8 5.1 70 5-76 69-144 (252)
35 KOG2720 Predicted hydrolase (H 95.2 0.02 4.3E-07 42.1 2.9 65 3-76 173-237 (431)
36 COG2134 Cdh CDP-diacylglycerol 94.9 0.15 3.3E-06 35.2 6.3 67 8-76 72-144 (252)
37 KOG0562 Predicted hydrolase (H 94.5 0.019 4.2E-07 38.1 1.2 70 4-78 31-105 (184)
38 PF01076 Mob_Pre: Plasmid reco 91.4 1.2 2.6E-05 30.0 6.4 51 25-82 94-145 (196)
39 COG5075 Uncharacterized conser 90.0 0.43 9.2E-06 33.8 3.3 64 11-78 185-251 (305)
40 PF02729 OTCace_N: Aspartate/o 76.3 5.3 0.00012 25.6 3.7 31 18-48 1-31 (142)
41 PF03432 Relaxase: Relaxase/Mo 76.0 6.8 0.00015 26.5 4.4 23 52-80 90-113 (242)
42 TIGR03793 TOMM_pelo TOMM prope 73.5 5.1 0.00011 23.2 2.8 24 9-35 52-75 (77)
43 PF14394 DUF4423: Domain of un 66.8 20 0.00043 23.7 4.9 51 17-77 119-170 (171)
44 KOG2958 Galactose-1-phosphate 66.6 30 0.00066 25.4 6.0 56 17-75 116-174 (354)
45 PLN02349 glycerol-3-phosphate 65.4 34 0.00073 26.1 6.3 46 2-47 245-292 (426)
46 PF01446 Rep_1: Replication pr 64.2 45 0.00097 23.2 6.5 10 67-76 78-87 (233)
47 PRK13863 type IV secretion sys 63.8 25 0.00054 26.8 5.4 35 53-94 120-154 (446)
48 PRK14751 tetracycline resistan 62.7 3.7 8E-05 18.8 0.6 11 86-96 14-24 (28)
49 PF14317 YcxB: YcxB-like prote 62.6 6.9 0.00015 20.3 1.8 25 8-38 37-61 (62)
50 PF13960 DUF4218: Domain of un 53.6 4.4 9.5E-05 25.8 0.0 42 25-77 17-58 (128)
51 PF08076 TetM_leader: Tetracyc 51.7 7.9 0.00017 17.9 0.7 12 85-96 13-24 (28)
52 PRK02255 putrescine carbamoylt 51.0 25 0.00053 25.9 3.5 30 16-45 2-31 (338)
53 PRK13878 conjugal transfer rel 50.6 26 0.00057 28.6 3.9 22 50-77 100-121 (746)
54 cd08621 PI-PLCXDc_like_2 Catal 50.1 94 0.002 22.4 7.5 34 8-41 103-141 (300)
55 COG1586 SpeD S-adenosylmethion 48.5 72 0.0016 20.6 4.9 63 17-80 15-84 (136)
56 COG0540 PyrB Aspartate carbamo 46.0 27 0.00059 25.6 3.1 29 16-44 6-34 (316)
57 COG0078 ArgF Ornithine carbamo 43.8 34 0.00074 25.0 3.3 32 16-47 5-36 (310)
58 PRK10870 transcriptional repre 43.5 43 0.00092 22.0 3.5 27 23-49 140-166 (176)
59 KOG4108 Dynein light chain [Ce 43.0 76 0.0016 21.3 4.6 44 26-69 93-138 (174)
60 PF11314 DUF3117: Protein of u 42.7 22 0.00048 18.8 1.6 28 14-41 22-50 (51)
61 PRK03573 transcriptional regul 42.3 48 0.001 20.6 3.5 26 23-48 115-140 (144)
62 PF06466 PCAF_N: PCAF (P300/CB 42.0 39 0.00084 24.0 3.3 34 18-51 71-104 (252)
63 PRK11891 aspartate carbamoyltr 41.2 38 0.00083 25.8 3.4 31 14-44 84-114 (429)
64 TIGR02768 TraA_Ti Ti-type conj 40.2 1E+02 0.0022 25.1 5.7 49 25-80 95-143 (744)
65 PLN02342 ornithine carbamoyltr 39.1 45 0.00097 24.7 3.4 29 17-45 45-73 (348)
66 PRK02102 ornithine carbamoyltr 39.0 42 0.00092 24.6 3.2 31 16-46 6-36 (331)
67 PF14425 Imm3: Immunity protei 39.0 40 0.00087 21.1 2.7 25 24-48 85-109 (117)
68 TIGR03330 SAM_DCase_Bsu S-aden 38.9 75 0.0016 19.5 3.9 59 21-80 9-73 (112)
69 PF11950 DUF3467: Protein of u 38.7 72 0.0016 18.8 3.7 28 24-51 62-89 (92)
70 PRK14804 ornithine carbamoyltr 37.9 42 0.00091 24.3 3.0 28 17-44 6-33 (311)
71 TIGR02147 Fsuc_second hypothet 36.8 1.4E+02 0.003 21.3 5.5 53 17-79 217-270 (271)
72 COG3938 Proline racemase [Amin 36.7 45 0.00099 24.5 3.0 38 10-50 174-211 (341)
73 PRK03124 S-adenosylmethionine 36.7 94 0.002 19.6 4.2 59 21-80 10-74 (127)
74 TIGR00670 asp_carb_tr aspartat 36.7 46 0.00099 24.0 3.1 28 18-45 1-28 (301)
75 PHA02698 hypothetical protein; 36.6 62 0.0013 18.9 3.0 21 26-46 66-86 (89)
76 PF08848 DUF1818: Domain of un 35.9 44 0.00095 21.0 2.5 52 24-76 29-88 (117)
77 PRK00856 pyrB aspartate carbam 35.3 48 0.0011 23.9 3.0 29 17-45 5-33 (305)
78 PRK04284 ornithine carbamoyltr 34.8 52 0.0011 24.1 3.1 29 17-45 6-34 (332)
79 PRK01713 ornithine carbamoyltr 34.2 53 0.0012 24.0 3.1 29 17-45 7-35 (334)
80 PRK00779 ornithine carbamoyltr 34.0 52 0.0011 23.7 3.0 30 17-46 4-33 (304)
81 PF08751 TrwC: TrwC relaxase; 34.0 1.4E+02 0.0031 21.4 5.2 19 30-48 107-125 (296)
82 PRK13889 conjugal transfer rel 33.9 2.5E+02 0.0054 24.0 7.1 62 25-92 95-159 (988)
83 cd00225 API3 Ascaris pepsin in 33.8 88 0.0019 20.6 3.7 22 23-44 120-141 (159)
84 PF14468 DUF4427: Protein of u 33.4 1.3E+02 0.0028 19.2 5.2 47 33-88 82-128 (132)
85 PRK14805 ornithine carbamoyltr 33.3 56 0.0012 23.6 3.0 27 18-44 2-28 (302)
86 PF02686 Glu-tRNAGln: Glu-tRNA 33.0 77 0.0017 17.2 3.1 25 26-50 1-25 (72)
87 PRK13814 pyrB aspartate carbam 33.0 56 0.0012 23.7 3.0 26 18-43 6-31 (310)
88 PF09830 ATP_transf: ATP adeny 32.5 56 0.0012 17.9 2.3 12 72-83 10-21 (62)
89 PRK04025 S-adenosylmethionine 32.3 1.3E+02 0.0027 19.4 4.3 59 21-80 10-74 (139)
90 KOG1504 Ornithine carbamoyltra 32.2 68 0.0015 23.3 3.2 31 17-47 39-69 (346)
91 PRK08192 aspartate carbamoyltr 31.8 57 0.0012 24.0 2.9 28 17-44 5-32 (338)
92 PRK03515 ornithine carbamoyltr 31.7 67 0.0015 23.6 3.3 29 17-45 6-34 (336)
93 PRK02289 4-oxalocrotonate taut 31.7 86 0.0019 16.6 4.6 42 18-62 4-47 (60)
94 PRK09362 phosphoribosylaminoim 31.7 54 0.0012 23.0 2.7 44 14-57 131-174 (238)
95 TIGR00658 orni_carb_tr ornithi 31.2 70 0.0015 23.0 3.3 28 18-45 1-28 (304)
96 PRK12562 ornithine carbamoyltr 31.1 70 0.0015 23.5 3.3 29 17-45 6-34 (334)
97 TIGR00074 hypC_hupF hydrogenas 31.1 1.1E+02 0.0024 17.6 4.4 39 6-46 35-73 (76)
98 PF02866 Ldh_1_C: lactate/mala 30.3 1.1E+02 0.0025 19.7 3.9 26 24-49 146-171 (174)
99 PRK07200 aspartate/ornithine c 30.1 74 0.0016 24.0 3.3 29 17-45 20-48 (395)
100 PRK04523 N-acetylornithine car 29.3 65 0.0014 23.6 2.9 27 17-43 3-29 (335)
101 KOG2270 Serine/threonine prote 28.6 89 0.0019 24.2 3.5 74 2-75 229-319 (520)
102 PF06831 H2TH: Formamidopyrimi 28.4 75 0.0016 18.6 2.6 25 23-47 59-83 (92)
103 TIGR00081 purC phosphoribosyla 28.2 71 0.0015 22.4 2.8 43 15-57 134-176 (237)
104 PRK01706 S-adenosylmethionine 27.9 1.6E+02 0.0034 18.4 4.2 59 21-80 12-76 (123)
105 TIGR01323 nitrile_alph nitrile 27.8 83 0.0018 21.3 2.9 25 10-35 147-171 (185)
106 PRK13376 pyrB bifunctional asp 27.7 77 0.0017 24.9 3.1 30 17-46 7-36 (525)
107 PRK00458 S-adenosylmethionine 27.5 1.6E+02 0.0036 18.5 4.3 60 20-80 20-86 (127)
108 COG0298 HypC Hydrogenase matur 27.3 1E+02 0.0022 18.1 2.9 25 23-47 53-77 (82)
109 PRK14826 putative deoxyribonuc 27.2 1.1E+02 0.0025 21.1 3.7 36 12-47 180-218 (222)
110 PRK02770 S-adenosylmethionine 27.2 1.5E+02 0.0032 19.1 3.9 59 21-80 23-87 (139)
111 PF10504 DUF2452: Protein of u 27.2 80 0.0017 20.9 2.7 18 54-72 82-99 (159)
112 PF09545 RE_AccI: AccI restric 27.1 1.8E+02 0.004 21.4 4.7 52 26-77 209-267 (366)
113 TIGR03316 ygeW probable carbam 27.0 83 0.0018 23.4 3.1 29 17-45 3-31 (357)
114 PF06194 Phage_Orf51: Phage Co 26.8 1.3E+02 0.0029 17.4 3.3 37 43-80 8-48 (80)
115 PRK01236 S-adenosylmethionine 26.6 1.5E+02 0.0034 18.7 3.9 59 21-80 11-75 (131)
116 PF01698 FLO_LFY: Floricaula / 26.1 22 0.00048 26.7 0.0 24 20-43 75-98 (386)
117 PF09509 Hypoth_Ymh: Protein o 25.9 1.2E+02 0.0026 18.9 3.3 29 16-44 95-124 (125)
118 PRK13959 phosphoribosylaminoim 25.6 70 0.0015 23.7 2.5 41 16-56 185-225 (341)
119 PF15149 CATSPERB: Cation chan 25.3 1.6E+02 0.0034 23.3 4.3 39 49-92 445-484 (540)
120 KOG2712 Transcriptional coacti 25.2 1.5E+02 0.0033 18.3 3.5 23 26-48 83-105 (108)
121 cd04751 Commd3 COMM_Domain con 25.2 1.1E+02 0.0024 18.0 3.0 25 24-48 69-93 (95)
122 PF04120 Iron_permease: Low af 25.1 1.2E+02 0.0026 19.4 3.2 29 19-47 88-116 (132)
123 PF13492 GAF_3: GAF domain; PD 24.9 1.5E+02 0.0032 17.0 4.1 28 33-60 1-28 (129)
124 TIGR02391 hypoth_ymh conserved 24.9 1.9E+02 0.004 18.2 4.1 33 16-48 90-123 (125)
125 cd01415 SAICAR_synt_PurC bacte 24.7 83 0.0018 21.9 2.6 40 17-56 129-168 (230)
126 PRK00066 ldh L-lactate dehydro 24.4 1.3E+02 0.0029 21.6 3.7 25 25-49 290-314 (315)
127 COG0780 Enzyme related to GTP 24.0 2.2E+02 0.0047 18.6 5.1 40 36-82 96-135 (149)
128 PLN02527 aspartate carbamoyltr 24.0 1.1E+02 0.0025 22.0 3.3 27 19-45 2-28 (306)
129 PRK06474 hypothetical protein; 23.9 1.3E+02 0.0029 19.8 3.4 24 24-47 134-157 (178)
130 KOG2650 Zinc carboxypeptidase 23.9 1.3E+02 0.0028 23.0 3.7 44 9-57 311-354 (418)
131 COG0152 PurC Phosphoribosylami 23.9 1.8E+02 0.004 20.6 4.2 41 17-57 134-174 (247)
132 PRK07758 hypothetical protein; 23.9 16 0.00034 22.1 -0.9 32 20-51 58-89 (95)
133 PRK14823 putative deoxyribonuc 23.7 1.2E+02 0.0026 20.4 3.2 34 12-45 152-188 (191)
134 PF08925 DUF1907: Domain of Un 23.5 79 0.0017 22.9 2.3 49 37-93 166-219 (284)
135 PRK00419 DNA primase small sub 23.3 2.9E+02 0.0062 20.9 5.3 27 32-58 119-145 (376)
136 KOG3052 Cytochrome c1 [Energy 23.3 60 0.0013 23.4 1.7 43 4-46 218-260 (311)
137 PF07954 DUF1689: Protein of u 23.2 1.3E+02 0.0029 19.6 3.2 23 24-46 12-34 (152)
138 PF01195 Pept_tRNA_hydro: Pept 23.1 1.2E+02 0.0026 20.2 3.1 27 23-49 146-172 (184)
139 PRK00120 dITP/XTP pyrophosphat 22.7 1.5E+02 0.0032 20.0 3.5 36 12-47 155-193 (196)
140 cd04498 hPOT1_OB2 hPOT1_OB2: A 22.6 2.1E+02 0.0046 18.0 4.1 41 49-92 77-123 (123)
141 PF02132 RecR: RecR protein; 22.5 1.2E+02 0.0025 15.0 2.3 19 29-47 1-19 (41)
142 PF11419 DUF3194: Protein of u 22.3 1.7E+02 0.0036 17.4 3.2 23 23-45 3-25 (87)
143 PF03389 MobA_MobL: MobA/MobL 22.2 2.6E+02 0.0057 19.0 5.6 47 25-80 78-126 (216)
144 PF02873 MurB_C: UDP-N-acetyle 22.2 1E+02 0.0022 18.7 2.4 42 9-51 54-95 (105)
145 PF01930 Cas_Cas4: Domain of u 21.9 1.9E+02 0.004 18.2 3.7 41 7-48 100-140 (162)
146 cd00309 chaperonin_type_I_II c 21.6 2E+02 0.0044 21.6 4.4 34 27-60 6-39 (464)
147 PRK09706 transcriptional repre 21.6 1.3E+02 0.0028 18.6 2.9 29 21-49 94-122 (135)
148 PF05199 GMC_oxred_C: GMC oxid 21.6 2E+02 0.0043 17.4 4.6 43 6-48 1-48 (144)
149 KOG3189 Phosphomannomutase [Li 21.6 3E+02 0.0064 19.4 4.8 34 25-58 140-179 (252)
150 PF04472 DUF552: Protein of un 21.4 1.2E+02 0.0026 16.8 2.5 26 22-47 28-53 (73)
151 smart00537 DCX Domain in the D 21.2 44 0.00095 19.5 0.6 21 4-24 14-34 (89)
152 PF06619 DUF1149: Protein of u 20.9 2E+02 0.0043 18.3 3.5 42 15-56 79-125 (127)
153 TIGR02930 vnfG_nitrog V-contai 20.8 71 0.0015 19.8 1.5 23 18-40 67-89 (109)
154 COG1334 FlaG Uncharacterized f 20.6 1.1E+02 0.0024 19.2 2.4 22 23-44 93-114 (120)
155 TIGR02929 anfG_nitrog Fe-only 20.5 73 0.0016 19.7 1.5 23 18-40 67-89 (109)
156 PRK00034 gatC aspartyl/glutamy 20.5 1.9E+02 0.0041 16.7 4.0 28 24-51 17-44 (95)
157 PRK13971 hydroxyproline-2-epim 20.5 3E+02 0.0066 20.3 4.9 37 12-50 173-209 (333)
158 PF01320 Colicin_Pyocin: Colic 20.4 1.3E+02 0.0028 17.8 2.5 21 21-41 5-25 (85)
159 PRK10413 hydrogenase 2 accesso 20.3 1.6E+02 0.0035 17.1 2.9 36 7-45 43-79 (82)
160 PF02675 AdoMet_dc: S-adenosyl 20.3 1.6E+02 0.0035 17.5 3.0 58 22-80 5-68 (106)
161 cd02983 P5_C P5 family, C-term 20.1 1.8E+02 0.0038 18.1 3.3 37 20-60 28-64 (130)
No 1
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=156.89 Aligned_cols=84 Identities=32% Similarity=0.468 Sum_probs=79.4
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
..+|+++||+|||||+|+.++.|++++++.+++.+++++++++++.+++++||+++|+|..+||.|+|+|+|||||+.+|
T Consensus 29 d~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~agq~V~HlH~HvIPr~~~d 108 (138)
T COG0537 29 DIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVFHLHIHIIPRYKGD 108 (138)
T ss_pred cCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCcccCcCcceEEEEEcCCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCCC
Q 034378 83 SEEN 86 (96)
Q Consensus 83 ~~~~ 86 (96)
....
T Consensus 109 ~~~~ 112 (138)
T COG0537 109 DNFP 112 (138)
T ss_pred CCcc
Confidence 5433
No 2
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=99.95 E-value=7e-28 Score=152.15 Aligned_cols=89 Identities=48% Similarity=0.651 Sum_probs=86.7
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+.+|+.|||+||+|+|-+..+.||+.+|..+|+..++++.+.|++.++.+++++.+++|+.+||+|+|+|+||+||+.+|
T Consensus 31 NlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQTVpHvHvHIlPR~~gD 110 (150)
T KOG3379|consen 31 NLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQTVPHVHVHILPRKAGD 110 (150)
T ss_pred eccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcccceeEEEEccccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccc
Q 034378 83 SEENDGNVS 91 (96)
Q Consensus 83 ~~~~~~~~~ 91 (96)
|..|+.||.
T Consensus 111 f~~Nd~IY~ 119 (150)
T KOG3379|consen 111 FGDNDLIYD 119 (150)
T ss_pred cccchHHHH
Confidence 999999885
No 3
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.95 E-value=4.9e-27 Score=148.25 Aligned_cols=84 Identities=35% Similarity=0.499 Sum_probs=79.0
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|..|||+||+||+|+.++.+|+++|+.+++.+++++.+++++.+++++||+++|+|+.+||+++|+|+||+||+++|
T Consensus 28 ~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~gq~v~H~HiHiiPR~~~d 107 (126)
T cd01275 28 NLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFNIGINDGKAGGGIVPHVHIHIVPRWNGD 107 (126)
T ss_pred cCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCCCcCEEEEEEeCCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999989999999999999999876
Q ss_pred CCCC
Q 034378 83 SEEN 86 (96)
Q Consensus 83 ~~~~ 86 (96)
...+
T Consensus 108 ~~~~ 111 (126)
T cd01275 108 TNFM 111 (126)
T ss_pred CCCC
Confidence 5444
No 4
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.95 E-value=2e-27 Score=144.16 Aligned_cols=78 Identities=31% Similarity=0.538 Sum_probs=74.7
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
...|.++||+||+||+|++++.||+++++.+|+.+++++++++++.+++++||+.+|+|+.+||+++|+|+||+||++
T Consensus 20 ~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 20 DIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp ESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSSSSS-EEEEEEEST
T ss_pred cCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCccCEEEEEEecccC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999986
No 5
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.94 E-value=3.4e-26 Score=139.24 Aligned_cols=76 Identities=33% Similarity=0.487 Sum_probs=73.7
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr 78 (96)
+..|..|||++|+||+|++++.||+++|+.+|+.+++++.+++++.+++++||+++|+++.+||+++|+|+||+||
T Consensus 28 ~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 28 DINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred CCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCcccCEEEEEEccC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.93 E-value=3.9e-25 Score=130.48 Aligned_cols=75 Identities=37% Similarity=0.581 Sum_probs=73.0
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
+.+|.++||+||+||+|+.++.+|+++++.+++.+++++.+++++.++.+++|+.+|+|+.+||+++|+|+||+|
T Consensus 12 ~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~H~hiiP 86 (86)
T cd00468 12 NLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHVHLHVLP 86 (86)
T ss_pred CCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEEEEEeCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.92 E-value=3.1e-25 Score=139.34 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=71.9
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHH-hhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLE-SYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAA 81 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~-~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~ 81 (96)
...|.++||+||+||+|+.++.||+++++.+++.+++.+.+.++ +.+++++||+++|+|+.+||+|+|+|+||+||+..
T Consensus 31 D~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g~~l~~n~G~~agQ~V~HlHiHvI~g~~~ 110 (119)
T PRK10687 31 DISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110 (119)
T ss_pred cCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcCCcccCEEEEEECCCccc
Confidence 46899999999999999999999999999999888887777665 44788999999999999999999999999999874
Q ss_pred C
Q 034378 82 S 82 (96)
Q Consensus 82 d 82 (96)
+
T Consensus 111 ~ 111 (119)
T PRK10687 111 G 111 (119)
T ss_pred C
Confidence 3
No 8
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.90 E-value=1.3e-23 Score=128.24 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=67.3
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC--CCceEEEEecCCCCCCCcceEEEEEeeC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHK--ASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~--~~~~~i~~~~~~~~gq~v~H~HiHiiPr 78 (96)
+..|.+|||+||+||+|+.++.||+++++.++..+++.+ +++.+.++ +++||+++|+|+.+||+++|+|+|||+|
T Consensus 28 ~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 28 DINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAA-AKVAKDLGIAEDGYRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred CCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHH-HHHHHHhCCCCCCEEEEEeCCCCCCCceeEEEEEEeCC
Confidence 578999999999999999999999999998888888877 55555566 6899999999999999999999999986
No 9
>PLN02643 ADP-glucose phosphorylase
Probab=99.86 E-value=2.3e-21 Score=139.64 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=80.8
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCC--CCC--cceEEEEEeeC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQA--GQT--VPHVHIHIVPR 78 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~--gq~--v~H~HiHiiPr 78 (96)
+..|..|||+||+||+|+.++.||+++|+.+|+.+++++++++++.++..+||+++|+++.. ++. .+|||+||+||
T Consensus 223 p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~pyN~~~~~~P~~~~~~~~~~~H~hihi~PR 302 (336)
T PLN02643 223 PFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPYNYMIQTSPLGVEESNLPYTHWFLQIVPQ 302 (336)
T ss_pred ccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeecCCCccccCcccceEEEEEEecC
Confidence 45688899999999999999999999999999999999999999999999999999999973 453 46777899999
Q ss_pred CC--CCCCCCCCcccc
Q 034378 79 KA--ASSEENDGNVSW 92 (96)
Q Consensus 79 ~~--~d~~~~~~~~~~ 92 (96)
.+ ++||.|+|+|+=
T Consensus 303 l~~~aGfElg~g~~in 318 (336)
T PLN02643 303 LSGVGGFELGTGCYIN 318 (336)
T ss_pred cCCccceeccCCCeeC
Confidence 76 789999998873
No 10
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.85 E-value=3.3e-21 Score=139.36 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=80.3
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCCC--CcceEEEEEeeCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAGQ--TVPHVHIHIVPRK 79 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~-~~~i~~~~~~~~gq--~v~H~HiHiiPr~ 79 (96)
+..|..|||+||+||+|+.++.||+++++.+|+.+++++++++++.|+.+ +||+++|+++..|+ ..+|||+||+||+
T Consensus 224 p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 224 PYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred ccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCc
Confidence 46789999999999999999999999999999999999999999999766 99999999998775 4578999999994
Q ss_pred ---------CCCCCCCCCccccc
Q 034378 80 ---------AASSEENDGNVSWD 93 (96)
Q Consensus 80 ---------~~d~~~~~~~~~~~ 93 (96)
..+||. +|+|+=|
T Consensus 304 ~R~~~~~k~~aGfE~-~g~~in~ 325 (347)
T TIGR00209 304 LRSATVRKFMVGYEM-LGETQRD 325 (347)
T ss_pred ccccccccceeehhh-hcCccCC
Confidence 378888 8888633
No 11
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.85 E-value=4.8e-21 Score=118.31 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=67.8
Q ss_pred CCCCccccEEEeCCcc---cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 4 IEQYAFGPFKIDPRRD---AVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 4 ~~p~~~g~~lIiPk~H---~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
+.|.+|||+|||||+| .+...|.+++.+.+++.+.+++++++.- .++||+++|+|+.++|+|+|+|+||+|++.
T Consensus 45 i~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl---~~gYrvv~NnG~~g~QsV~HvH~HvlgGrq 121 (127)
T KOG3275|consen 45 IAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGL---EDGYRVVQNNGKDGHQSVYHVHLHVLGGRQ 121 (127)
T ss_pred cCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCc---ccceeEEEcCCcccceEEEEEEEEEeCCcc
Confidence 6799999999999999 5666788888999999999999888753 457999999999999999999999999777
Q ss_pred CCC
Q 034378 81 ASS 83 (96)
Q Consensus 81 ~d~ 83 (96)
..+
T Consensus 122 m~W 124 (127)
T KOG3275|consen 122 MQW 124 (127)
T ss_pred cCC
Confidence 654
No 12
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.84 E-value=8.2e-21 Score=137.26 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=78.4
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCC--CCcceEEEEEeeCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAG--QTVPHVHIHIVPRK 79 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~-~~~i~~~~~~~~g--q~v~H~HiHiiPr~ 79 (96)
+..|..|||+||+||+|+.++.||+++++.+|+.+++++++++++.|+.+ +||+++|+++..| |.++|||+||+||+
T Consensus 224 p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (346)
T PRK11720 224 PYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPL 303 (346)
T ss_pred ccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCc
Confidence 35688999999999999999999999999999999999999999999766 7999999998654 57899999999995
Q ss_pred ---------CCCCCCCCCccc
Q 034378 80 ---------AASSEENDGNVS 91 (96)
Q Consensus 80 ---------~~d~~~~~~~~~ 91 (96)
..+||. +|.|+
T Consensus 304 ~Rs~~~~k~~aGfE~-~g~~i 323 (346)
T PRK11720 304 LRSATVRKFMVGYEM-LAETQ 323 (346)
T ss_pred cCccccccceeeeec-ccCcc
Confidence 267888 77776
No 13
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.83 E-value=2.6e-20 Score=113.84 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=65.9
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhh--cCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESY--HKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~--~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
+..|.+|||+||+||+|+.++.+|+++++.+++.+++.+.+.+++. +++++||+++|.++. |+|+|+|+|||
T Consensus 30 ~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~n~g~h~~p~--~~v~H~H~Hvi 103 (104)
T cd01278 30 DIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDPSEFRFGFHAPPF--TSVSHLHLHVI 103 (104)
T ss_pred CCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCccCeEEEeCCCCC--cCeeeEEEEee
Confidence 4679999999999999999999999999999999999998878775 577899999999886 89999999997
No 14
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.83 E-value=2.4e-20 Score=134.05 Aligned_cols=90 Identities=23% Similarity=0.274 Sum_probs=79.1
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC-CCceEEEEecCCCCC----CCcceEEEEEee
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHK-ASSLAFAIQDGPQAG----QTVPHVHIHIVP 77 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~-~~~~~i~~~~~~~~g----q~v~H~HiHiiP 77 (96)
+..|..|||++|+||+|+.++.||+++|+.+|+.+++++++++++.++ ..+||+++|+++..| +.++|+|+||+|
T Consensus 214 p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~P 293 (329)
T cd00608 214 PFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPP 293 (329)
T ss_pred ecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCC
Confidence 346788999999999999999999999999999999999999999999 558999999998764 688999999999
Q ss_pred CCC-------CCCCCCCCcccc
Q 034378 78 RKA-------ASSEENDGNVSW 92 (96)
Q Consensus 78 r~~-------~d~~~~~~~~~~ 92 (96)
|+. .++|.++|.++-
T Consensus 294 r~~~~~~~~~aGfE~~~g~~in 315 (329)
T cd00608 294 RRSATVLKFMAGFELGAGEFIN 315 (329)
T ss_pred CcCCCceeeeEEeeccCCCccC
Confidence 953 567777777653
No 15
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.31 E-value=1.6e-11 Score=81.09 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=48.5
Q ss_pred CccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCC-CceEEEEecCCCCCCCc---ceEEEEE
Q 034378 7 YAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKA-SSLAFAIQDGPQAGQTV---PHVHIHI 75 (96)
Q Consensus 7 ~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~-~~~~i~~~~~~~~gq~v---~H~HiHi 75 (96)
..|.+++|+||+|+.++.+++++|..+|+.+++.+++++++.|+. ..|++++|+.|..+..- +|+|+.+
T Consensus 47 ~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~~pY~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 47 RWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETSFPYNMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp -STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE---SSSS--TT--EEEEE-
T ss_pred cCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCCCCCchhhhcCCCCcccchhhhhccccc
Confidence 348999999999999999999999999999999999999999985 49999999999765443 4555544
No 16
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.25 E-value=6.7e-12 Score=88.58 Aligned_cols=89 Identities=19% Similarity=0.149 Sum_probs=74.9
Q ss_pred CccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCC-CceEEEEecCCCCC--CCc-ceE-EEEEee---C
Q 034378 7 YAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKA-SSLAFAIQDGPQAG--QTV-PHV-HIHIVP---R 78 (96)
Q Consensus 7 ~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~-~~~~i~~~~~~~~g--q~v-~H~-HiHiiP---r 78 (96)
.-|.++|+|||||+++|.+|++.+..+|+.+++.++.+.++.|+. ..|+++++..|.++ +.. .|| |+|++| |
T Consensus 233 ~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfPYsmg~h~aPl~~t~~e~~n~W~h~hFyppllr 312 (354)
T KOG2958|consen 233 TWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFETSFPYSMGIHGAPLGSTEQENYNHWLHMHFYPPLLR 312 (354)
T ss_pred cCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCccccccccCCcccccccccchhhhhhccccchh
Confidence 348899999999999999999999999999999999999999998 48999999998653 333 354 888886 4
Q ss_pred CC--CCCCCCCCccccccC
Q 034378 79 KA--ASSEENDGNVSWDFF 95 (96)
Q Consensus 79 ~~--~d~~~~~~~~~~~~~ 95 (96)
.. +.|..|.+.++=|++
T Consensus 313 satV~kF~vG~e~l~epqr 331 (354)
T KOG2958|consen 313 SATVRKFLVGYEMLAEPQR 331 (354)
T ss_pred hccccceeechhhhcCccc
Confidence 43 688889888887753
No 17
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.25 E-value=2.1e-11 Score=76.11 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=52.2
Q ss_pred CCCCCccccEEEeCCc-ccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC----CCceEEEEecCCCCCCCcceEEEEEee
Q 034378 3 SIEQYAFGPFKIDPRR-DAVRFGDLTADETRDLWLTAQTVGTQLESYHK----ASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~-H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~----~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
..+|.++.|+|||||+ |+.++.+|+.+.+.-|..+.+...+.+++... ...++++++..| +++|+|+|++.
T Consensus 28 D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~~~~~~~gfH~~P----S~~HLHlHvi~ 103 (116)
T PF11969_consen 28 DIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLDSDDIRLGFHYPP----SVYHLHLHVIS 103 (116)
T ss_dssp -TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-EGGGEEEEEESS-----SSSS-EEEEEE
T ss_pred CCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccccCCC----CcceEEEEEcc
Confidence 4678999999999999 99999999988777666666666666665552 457899998665 79999999997
Q ss_pred C
Q 034378 78 R 78 (96)
Q Consensus 78 r 78 (96)
.
T Consensus 104 ~ 104 (116)
T PF11969_consen 104 P 104 (116)
T ss_dssp T
T ss_pred C
Confidence 4
No 18
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.21 E-value=6.7e-11 Score=85.27 Aligned_cols=86 Identities=21% Similarity=0.231 Sum_probs=72.3
Q ss_pred CCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCC-CCCcceEEEEEee---CCC
Q 034378 6 QYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQA-GQTVPHVHIHIVP---RKA 80 (96)
Q Consensus 6 p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~-~~~i~~~~~~~~-gq~v~H~HiHiiP---r~~ 80 (96)
+..|.+++|+||+|+..+.||+++|..+|+.+++.+.+++++.++.. .|++++++.+.. .+.-+|+|+|++| |..
T Consensus 218 a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~ 297 (338)
T COG1085 218 ARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRSA 297 (338)
T ss_pred ccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEcccccccc
Confidence 34588999999999999999999999999999999999999999887 899999998754 3556899999999 543
Q ss_pred ------CCCCCCCCccc
Q 034378 81 ------ASSEENDGNVS 91 (96)
Q Consensus 81 ------~d~~~~~~~~~ 91 (96)
.+++.+++.++
T Consensus 298 t~~k~~~g~e~~~~e~~ 314 (338)
T COG1085 298 TKLKFLAGYEMGAGEFI 314 (338)
T ss_pred cccceeeeeecccceee
Confidence 35666665443
No 19
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=99.02 E-value=4.2e-09 Score=66.31 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=55.2
Q ss_pred CCCCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 1 MSSIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 1 ~~~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
||. .|+.+||++|+|-.|+.++.+++++.+.|+.+.-+.+.+...+ .|.+-+-+-.. .....|+|++++|-..
T Consensus 38 lpk-g~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~-~~~~vvf~E~~-----~~~~~H~~iq~vPvp~ 110 (121)
T PF04677_consen 38 LPK-GPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFAS-QGKDVVFFERV-----RKRNPHTHIQCVPVPK 110 (121)
T ss_pred eCC-CCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEEe-----CCCCcEEEEEEEEcCH
Confidence 355 8999999999999999999999999999999877777776655 24332222221 3446899999999543
No 20
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=99.00 E-value=1.6e-09 Score=69.34 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=61.3
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhc--CCCceEEEEecCCCCCCCcceEEEEEe-eCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYH--KASSLAFAIQDGPQAGQTVPHVHIHIV-PRK 79 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~--~~~~~~i~~~~~~~~gq~v~H~HiHii-Pr~ 79 (96)
.++|.+..|.|++||+|+.+..+|+.++..-+-+..+.-...+.+.. ..+...+++|..|. .+|.|+|+|+| |-.
T Consensus 61 DikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~td~~~~r~GFHLPPf--~SV~HLHlH~I~P~~ 138 (166)
T KOG4359|consen 61 DIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNFTDFTNVRMGFHLPPF--CSVSHLHLHVIAPVD 138 (166)
T ss_pred cCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhccCCchheeEeccCCCc--ceeeeeeEeeecchH
Confidence 46899999999999999999999999875544434443333444433 34467788888764 67999999987 665
Q ss_pred CCCCCCCCCcccccc
Q 034378 80 AASSEENDGNVSWDF 94 (96)
Q Consensus 80 ~~d~~~~~~~~~~~~ 94 (96)
.++| ++.+.-.|.
T Consensus 139 DMgf--~sKl~FrPs 151 (166)
T KOG4359|consen 139 DMGF--LSKLVFRPS 151 (166)
T ss_pred Hhch--hheeEeecc
Confidence 5655 334443343
No 21
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=6.5e-05 Score=56.48 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=49.3
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
+..|++.+|+||||-.|+.++..|+++.+.++-+--..+.+. .+.+|.+.+.+-... .-.-|+|+.+||--.
T Consensus 347 aKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~m-yk~~g~~~vvfE~~~-----~rs~Hlq~Qvipvpk 418 (528)
T KOG2476|consen 347 AKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKM-YKKQGKDAVVFERQS-----YRSVHLQLQVIPVPK 418 (528)
T ss_pred cCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHH-HHhcCCeEEEEEeec-----ccceeeEEEEEeccc
Confidence 468999999999999999999999987776665544444333 333444443333311 224599999999643
No 22
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=97.42 E-value=0.00063 Score=50.58 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=39.5
Q ss_pred CCCCCccccEEEeCCc--ccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 3 SIEQYAFGPFKIDPRR--DAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~--H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
+..|+.+||++++|.. |.... ++.+-+ .++-.++. ..+..+|.++.|. ..+..++.|+|+|..-
T Consensus 176 NvsPI~~gH~LlvP~~~~~lPQ~--i~~~~l----~la~~~a~----~~~~p~frvgYNS-lGA~ASvNHLHFQa~y 241 (403)
T PLN03103 176 NVSPIEYGHVLLVPRVLDCLPQR--IDPDSF----LLALYMAA----EANNPYFRVGYNS-LGAFATINHLHFQAYY 241 (403)
T ss_pred eCCCCccCeEEEcCCcccCCCeE--ecHHHH----HHHHHHHH----hcCCCcEEEEecC-CccccCcceeeeeecc
Confidence 4679999999999854 55443 333222 12222221 1234668888876 4455689999999764
No 23
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0016 Score=49.69 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=54.3
Q ss_pred CCCCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 1 MSSIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 1 ~~~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
+|+-.++..||++|+|-.|..+-..|+++.|.++-+..+-++...... +-+ +.+. -+.+ .=+.-+|+-||.||..+
T Consensus 434 Lp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~-n~d-viFy-E~a~-~l~rrpH~~IeCIPvpq 509 (628)
T KOG2477|consen 434 LPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASM-NLD-VIFY-ENAP-SLQRRPHTAIECIPVPQ 509 (628)
T ss_pred ccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhc-CCC-eEEE-eccC-ccccCCceeEEEeechH
Confidence 477789999999999999998888999999999887777665555432 222 2221 1111 22447999999999654
No 24
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0025 Score=45.37 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=52.9
Q ss_pred cEEEeCCcc-cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC--ceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 11 PFKIDPRRD-AVRFGDLTADETRDLWLTAQTVGTQLESYHKAS--SLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 11 ~~lIiPk~H-~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~--~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
+++.|-+|+ +.++-||..+.+.-|.++-+++..++...||.+ -..+.+|-.| +.+|+|+||++-..
T Consensus 190 yllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlrmf~HYqP----SyYHlHVHi~nik~ 258 (310)
T KOG3969|consen 190 YLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLRMFFHYQP----SYYHLHVHIVNIKH 258 (310)
T ss_pred eEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEEEEEEecC----ceEEEEEEEEeccC
Confidence 455555555 999999999999999999999999999888764 5777777544 36899999999543
No 25
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=97.25 E-value=0.0014 Score=47.38 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=54.9
Q ss_pred cEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 11 ~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
.++|...+|..++.+++.+++.+++.+.++-.+.|.+.-+..-+.+..|.|+.+|.+..|-|.+|+.
T Consensus 95 eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred EEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 6788899999999999999999999988888887765222233455678899999999999999874
No 26
>PLN02643 ADP-glucose phosphorylase
Probab=97.24 E-value=0.0017 Score=47.34 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=54.4
Q ss_pred ccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 10 g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
-+++|-.-+|..++.+|+.+++..+..+.++-.+.|++.-+..=+.+.-|.|+.+|.+..|-|-.|+.
T Consensus 108 ~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 108 HDVVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred EEEEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 45788889999999999999999999988877777765322223455678899999999999999875
No 27
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=96.84 E-value=0.0074 Score=44.10 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=56.6
Q ss_pred cEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 11 ~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
.++|-...|..++.+++.+++.++..+.+...+.|.+.-...-+.+..|.|+.+|.+..|-|..|+-
T Consensus 96 ~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 96 RVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred EEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 4566679999999999999999999999999999987543445667788899999999999999763
No 28
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=96.84 E-value=0.0064 Score=44.50 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=54.9
Q ss_pred ccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 10 g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
-+++|-..+|..++.+|+.+++..+..+.+.-.+.|.+. ..=+.+.-|.|+.+|.+..|=|-.|+.
T Consensus 106 ~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~--i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 106 SRVICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred EEEEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhC--CcEEEEEeecCcccCcCCCCCceeeee
Confidence 457888899999999999999999999999888888774 233445567799999999999999874
No 29
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.0068 Score=42.53 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRK 79 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~ 79 (96)
+.-|+.+.|+|||.++--..=+-|+..++....+++. +-++ -+..|.||.+|.+.+|-|+.++|.-
T Consensus 99 NKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~vL~----------~ldg-lvFYNsGp~aGaSq~HkHLQi~pmP 164 (298)
T COG4360 99 NKFPVVDEHLLIVTREFEDQESALTLADFTTAYAVLC----------GLDG-LVFYNSGPIAGASQDHKHLQIVPMP 164 (298)
T ss_pred hcCCcccceeEEeehhhhhccccCCHHHHHHHHHHHh----------cccc-eEEecCCCCcCcCCCccceeEeecc
Confidence 3568889999999887655455566555544333322 2233 3556889999999999999999853
No 30
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=96.11 E-value=0.037 Score=40.59 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=53.9
Q ss_pred ccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 10 g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
-+++|-.-+|-.++.+|+.+++..+..+.+.-.+.|.. +..=+.+.-|.|+.+|.+.+|-|-.|+.
T Consensus 106 ~eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~~--~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 106 SRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGK--TYPWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred EEEEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHHh--CCcEEEEEeecCcccCcCCCCCceeeee
Confidence 45777789999999999999999999999988888873 2233445567789999999999999874
No 31
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=96.02 E-value=0.034 Score=37.13 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=47.8
Q ss_pred cEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 11 ~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
+++|-.-+|-.++.+|+.++...++.+.+.-...|.+.-...-+.+.-|.|..+|.+..|=|-.|+.
T Consensus 112 EViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 112 EVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp EEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred EEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 6677788898999999999999999988877777655333333455677799999999999998874
No 32
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=95.85 E-value=0.028 Score=39.54 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=50.8
Q ss_pred CCccccEEEeCCcccCCcCC------CCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 6 QYAFGPFKIDPRRDAVRFGD------LTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 6 p~~~g~~lIiPk~H~~~l~d------l~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
+.-|.|.|+||-..++-+.+ -++..+.+-+..-..+.+++.+-+..+.+.+.+|.. .|.+-.|+||||=
T Consensus 69 ~~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~--~gRSQnQLHIHIs 143 (250)
T TIGR00672 69 LNGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSR--TGRSQNHFHIHIS 143 (250)
T ss_pred CCCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCC--CCcccccceeeHh
Confidence 45678999999998876652 223456666777777778887777666788888764 5788899999973
No 33
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=95.69 E-value=0.026 Score=39.10 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=39.8
Q ss_pred CCccccEEEeCCcccCCcCC------CCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 6 QYAFGPFKIDPRRDAVRFGD------LTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 6 p~~~g~~lIiPk~H~~~l~d------l~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
+.-+.++|+||-.-++-+.+ =++..+..-+..-..+.+++.+-+..+.+.+.+|.. .|.+-.|+||||-
T Consensus 41 ~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~--~gRsQdQLHIHis 115 (222)
T PF02611_consen 41 RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQ--YGRSQDQLHIHIS 115 (222)
T ss_dssp SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-G--GG-S--S--EEEE
T ss_pred CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCc--cCccccceEeEhh
Confidence 45678999999988776653 233456666666677888888877677899999874 4777789999974
No 34
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=95.50 E-value=0.039 Score=38.84 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=51.6
Q ss_pred CCCccccEEEeCCcccCCcCC---C---CHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 5 EQYAFGPFKIDPRRDAVRFGD---L---TADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 5 ~p~~~g~~lIiPk~H~~~l~d---l---~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
.+.-|.|.|+||-..++-+.+ + ++..+.+-+..-..+.+++.+.+..+.+.+.+|.. .|.+-.|+||||-
T Consensus 69 D~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~--~gRSQnQLHIHIs 144 (252)
T PRK05471 69 DRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSR--YGRTQDQLHIHIS 144 (252)
T ss_pred cCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCC--CCccccceeeehh
Confidence 345688999999998776643 1 22456677777777888888877666788888764 5788899999974
No 35
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=95.18 E-value=0.02 Score=42.14 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=37.2
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
+..|+..||+||||+.--..-.-++- .+|.-++..++. .+.+-+.++.|.- .+-.+|.|+|+|..
T Consensus 173 N~sPie~~H~LiiP~V~kc~pQrit~---~al~lav~~m~~-----~dd~~frlgyNSl-ga~AsVNHLHfha~ 237 (431)
T KOG2720|consen 173 NVSPIEYGHVLIIPRVLKCLPQRITH---KALLLAVTMMAE-----ADDPYFRLGYNSL-GAFASVNHLHFHAY 237 (431)
T ss_pred ecCccccCcEEEecchhccCcceeeH---HHHHHHHHHHHh-----cCCchhheecccc-hhhhhhhhhhhhhh
Confidence 46799999999999754322222222 222222222221 1334567776553 24577899999965
No 36
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=94.88 E-value=0.15 Score=35.18 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=46.7
Q ss_pred ccccEEEeCCcccCCcCCC------CHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 8 AFGPFKIDPRRDAVRFGDL------TADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 8 ~~g~~lIiPk~H~~~l~dl------~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
-|-..|++|-.+++-+.+- ++.-+-.-+++-..+++++.+.+....+.+.+|.. .|.+-.|+|+||-
T Consensus 72 gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaINs~--~gRtQdqlHIHIS 144 (252)
T COG2134 72 GPLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAINSK--NGRTQDQLHIHIS 144 (252)
T ss_pred CCceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEecCc--cCccccceEEEEE
Confidence 4677899999998766531 12235556666677778887776666777777653 5777889999974
No 37
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=94.48 E-value=0.019 Score=38.07 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=38.9
Q ss_pred CCCCccccEEEeCCcc-cCCcCCCCHHHHHHHHHHHH----HHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeC
Q 034378 4 IEQYAFGPFKIDPRRD-AVRFGDLTADETRDLWLTAQ----TVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (96)
Q Consensus 4 ~~p~~~g~~lIiPk~H-~~~l~dl~~~e~~~l~~~~~----~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr 78 (96)
..|-+..|+||+||+- ++++.+...+.+. +..... .+...+...--...+++++|.+ -+..++|+|||-.
T Consensus 31 ~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~-ll~~~h~~~~~~v~~~~~~~~~~~f~vG~Hav----PSM~~LHLHVISk 105 (184)
T KOG0562|consen 31 KFPKARMHLLVLPRRSSIDSLFSVVQEHLS-LLKEDHAVGPCWVDQLTNEALCNYFRVGFHAV----PSMNNLHLHVISK 105 (184)
T ss_pred cCccceeEEEEecccchhHHHHHHHHHHhh-HhHHHhhcCchHHHHhcchhhhhheeeeeccC----cchhheeEEEeec
Confidence 3577889999999743 4555444444322 122222 2223322211123567777654 4577999999974
No 38
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=91.44 E-value=1.2 Score=29.99 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 25 DLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 25 dl~~~e~~~l~~~~~~v~~~l~~~~~~~-~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+++.++ .-...+...+.+.+.+|.+ -++..+|.. .+.||+|+-++|...++
T Consensus 94 ~~~~e~---~~~~~~~~~~~~~~r~g~~ni~~a~vH~D----E~tPH~H~~~vP~~~~~ 145 (196)
T PF01076_consen 94 DLDPEQ---QKRWFEDSLEWLQERYGNENIVSAVVHLD----ETTPHMHFDVVPIDEDG 145 (196)
T ss_pred chhhHH---HHHHHHHHHHHHHHHCCchhEEEEEEECC----CCCcceEEEEeeccccc
Confidence 344444 4445566777888888855 567778765 45899999999987654
No 39
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=0.43 Score=33.78 Aligned_cols=64 Identities=20% Similarity=0.146 Sum_probs=44.4
Q ss_pred cEEEeC-CcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC--ceEEEEecCCCCCCCcceEEEEEeeC
Q 034378 11 PFKIDP-RRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS--SLAFAIQDGPQAGQTVPHVHIHIVPR 78 (96)
Q Consensus 11 ~~lIiP-k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~--~~~i~~~~~~~~gq~v~H~HiHiiPr 78 (96)
++++|- +.-+.++-||....+.-+.++-.++.......|+.+ -..+.+|-.| +.+|+|+||+--
T Consensus 185 ~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~mfvHY~P----sYyhlHvHI~nI 251 (305)
T COG5075 185 YLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELRMFVHYQP----SYYHLHVHIVNI 251 (305)
T ss_pred eEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeEEEEEecc----ceEEEEEEEEee
Confidence 344444 445888999999988888887777766665555543 4666766544 368999999863
No 40
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=76.28 E-value=5.3 Score=25.57 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=26.7
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
||.-++.|++.+|+..+.+.+..+.+..++.
T Consensus 1 r~~l~~~dls~~ei~~ll~~A~~lk~~~~~~ 31 (142)
T PF02729_consen 1 RHLLSIKDLSPEEIEALLDLAKELKAAPKKG 31 (142)
T ss_dssp SEBSSGGGS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCchhhCCHHHHHHHHHHHHHHHhhhhcC
Confidence 6888999999999999999999998888764
No 41
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=75.99 E-value=6.8 Score=26.49 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=14.8
Q ss_pred CceEEEEecCCCCCCCcceEEEEEe-eCCC
Q 034378 52 SSLAFAIQDGPQAGQTVPHVHIHIV-PRKA 80 (96)
Q Consensus 52 ~~~~i~~~~~~~~gq~v~H~HiHii-Pr~~ 80 (96)
..|-++.|.. -.|.|+||+ .|..
T Consensus 90 ~~~v~~~H~D------~~h~H~Hivin~v~ 113 (242)
T PF03432_consen 90 HQYVVVVHTD------TDHPHVHIVINRVD 113 (242)
T ss_pred cceEEEECCC------cCeeeeeEEEeecc
Confidence 3566666543 469999977 5644
No 42
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=73.51 E-value=5.1 Score=23.20 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=19.4
Q ss_pred cccEEEeCCcccCCcCCCCHHHHHHHH
Q 034378 9 FGPFKIDPRRDAVRFGDLTADETRDLW 35 (96)
Q Consensus 9 ~g~~lIiPk~H~~~l~dl~~~e~~~l~ 35 (96)
.-+.+|+|.+.-. +|+++++.+++
T Consensus 52 ~~~~lVlP~~P~~---~lse~~L~~va 75 (77)
T TIGR03793 52 TVLYLVLPVNPDI---ELTDEQLDAVA 75 (77)
T ss_pred CeEEEEecCCCCC---CCCHHHHHHhh
Confidence 3477999999977 89999987764
No 43
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=66.76 E-value=20 Score=23.70 Aligned_cols=51 Identities=10% Similarity=0.212 Sum_probs=35.4
Q ss_pred CcccCCc-CCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 17 RRDAVRF-GDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 17 k~H~~~l-~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
+|+++++ ..++++.+.++...+++..+.+.+....+ .....|+++-++++|
T Consensus 119 ~R~~s~~T~~vs~~~~~ki~~~i~~fRk~i~~i~~~~----------~~~~~Vy~lN~qlFP 170 (171)
T PF14394_consen 119 ERDFSGLTMSVSREDYEKIKKEIREFRKKIIAIAEED----------KEPDRVYQLNIQLFP 170 (171)
T ss_pred ccceeeeEEEeCHHHHHHHHHHHHHHHHHHHHHHhcC----------CCCCeEEEEEEEEec
Confidence 5666666 57788888888887777777766543321 124568888899888
No 44
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=66.58 E-value=30 Score=25.36 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=41.4
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEE---EecCCCCCCCcceEEEEE
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFA---IQDGPQAGQTVPHVHIHI 75 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~---~~~~~~~gq~v~H~HiHi 75 (96)
-.|--.+.+++..++.++..+-+++...|.+ .++|+++ -|.|...|++.+|-|=..
T Consensus 116 Pnh~ltLp~m~~~~i~~vv~aw~~~~~~l~~---h~~y~yvQIFeNkGa~mGcSn~HpHgQ~ 174 (354)
T KOG2958|consen 116 PNHNLTLPLMDVVEIRDVVDAWKKLYNELGQ---HDSYKYVQIFENKGAAMGCSNPHPHGQA 174 (354)
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHhcc---cCCcceeeeeccCCcccccCCCCcccce
Confidence 3444458899999999998888888777765 4555554 466777799999888664
No 45
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=65.39 E-value=34 Score=26.09 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=35.0
Q ss_pred CCCCCCccccEEEe--CCcccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 2 SSIEQYAFGPFKID--PRRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 2 ~~~~p~~~g~~lIi--Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
|=.+|++-|.-|++ .|+|+.+--+|.++....=++.++.+...|++
T Consensus 245 pL~~PFSmGrNLlCVySKKhm~d~Pelke~K~~~N~kslk~~~~lL~~ 292 (426)
T PLN02349 245 PLCKPFSMGRNLICVHSKKHMNDDPELKEMKRKANTRTLKEMALLLRE 292 (426)
T ss_pred cccCccccCCceEEEEeccccCCChhhHHHHHHHHHHHHHHHHHHHhc
Confidence 44688999988854 99999987777777777777777777666654
No 46
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=64.23 E-value=45 Score=23.21 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=7.5
Q ss_pred CcceEEEEEe
Q 034378 67 TVPHVHIHIV 76 (96)
Q Consensus 67 ~v~H~HiHii 76 (96)
..+|-|+||+
T Consensus 78 g~~HPH~Hvl 87 (233)
T PF01446_consen 78 GSWHPHFHVL 87 (233)
T ss_pred CeeccceEEE
Confidence 3478888876
No 47
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=63.79 E-value=25 Score=26.82 Aligned_cols=35 Identities=14% Similarity=0.016 Sum_probs=19.9
Q ss_pred ceEEEEecCCCCCCCcceEEEEEeeCCCCCCCCCCCcccccc
Q 034378 53 SLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEENDGNVSWDF 94 (96)
Q Consensus 53 ~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d~~~~~~~~~~~~ 94 (96)
.|.+++|+.+ .|=|+||+=+.. +.+..++++++|.
T Consensus 120 dYV~AlH~D~------dHPHVHLvVnrR-d~~G~~~lri~~r 154 (446)
T PRK13863 120 NYLTAFHIDR------DHPHLHVVVNRR-ELLGHGWLKISRR 154 (446)
T ss_pred eEEEEEecCC------CCCeEEEEEEee-cCCCCceeeecCC
Confidence 5667776543 588888765322 2223446676653
No 48
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=62.74 E-value=3.7 Score=18.85 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=8.3
Q ss_pred CCCccccccCC
Q 034378 86 NDGNVSWDFFC 96 (96)
Q Consensus 86 ~~~~~~~~~~~ 96 (96)
...||.|..+|
T Consensus 14 dksi~hwdf~~ 24 (28)
T PRK14751 14 DKSIYHWDFYA 24 (28)
T ss_pred cCceeeeeehh
Confidence 46788888776
No 49
>PF14317 YcxB: YcxB-like protein
Probab=62.56 E-value=6.9 Score=20.34 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=16.6
Q ss_pred ccccEEEeCCcccCCcCCCCHHHHHHHHHHH
Q 034378 8 AFGPFKIDPRRDAVRFGDLTADETRDLWLTA 38 (96)
Q Consensus 8 ~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~ 38 (96)
..+..++|||+- +++++..++.+.+
T Consensus 37 ~~~~~~~iPk~~------f~~~e~~~f~~~l 61 (62)
T PF14317_consen 37 GKNQAFIIPKRA------FSEEEKEEFREFL 61 (62)
T ss_pred CCCeEEEEEHHH------CCHhHHHHHHHHh
Confidence 355788999984 3466666666554
No 50
>PF13960 DUF4218: Domain of unknown function (DUF4218)
Probab=53.62 E-value=4.4 Score=25.80 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 25 DLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 25 dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
.++.+++.+|-..+......|+..|++.-+++.+ |+.+|+.-
T Consensus 17 vi~~~~l~~L~~~I~~~lc~lE~ifppsffdim~-----------HL~vHL~~ 58 (128)
T PF13960_consen 17 VIDPDDLDELEEEIVETLCQLEMIFPPSFFDIMV-----------HLLVHLVD 58 (128)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHcchhHhhhhH-----------HHHHHHHH
Confidence 3677888888888888889999999887666653 77778665
No 51
>PF08076 TetM_leader: Tetracycline resistance determinant leader peptide; InterPro: IPR012992 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(M) ribosomal protection proteins. A short open reading frame corresponding to a 28 amino acid peptide, which contains a number of inverted repeat sequences was found immediately upstream of tet(M). Transcriptional analyses has found that expression of tet(M) resulted from an extension of a small transcript representing the upstream leader region into the resistance determinant. Therefore, this leader sequence is responsible for transcriptional attenuation and thus regulation of the transcription of tet(M) [].
Probab=51.68 E-value=7.9 Score=17.89 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=8.4
Q ss_pred CCCCccccccCC
Q 034378 85 ENDGNVSWDFFC 96 (96)
Q Consensus 85 ~~~~~~~~~~~~ 96 (96)
....+|.|...|
T Consensus 13 ~D~S~y~WDF~~ 24 (28)
T PF08076_consen 13 SDKSIYHWDFCS 24 (28)
T ss_pred Cccceeehhhhh
Confidence 356788887655
No 52
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=50.96 E-value=25 Score=25.87 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=25.8
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
..+|+-++.|++.+|+..+......+.+..
T Consensus 2 ~~k~ll~i~dls~~ei~~ll~~A~~~k~~~ 31 (338)
T PRK02255 2 KKRDFIDTNDFTKEEILDIIELGLKLKEAI 31 (338)
T ss_pred CCCCCcchhhCCHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999988887643
No 53
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=50.55 E-value=26 Score=28.65 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=15.2
Q ss_pred CCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 50 KASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 50 ~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
+..-|-++.|.. ..|+|+||+=
T Consensus 100 ~~hQ~Vva~H~D------Tdh~HiHIvi 121 (746)
T PRK13878 100 GEHQRVSAVHHD------TDNLHIHIAI 121 (746)
T ss_pred CCceEEEEEECC------CCCceeEEEE
Confidence 344566777643 5799999984
No 54
>cd08621 PI-PLCXDc_like_2 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=50.14 E-value=94 Score=22.36 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=25.3
Q ss_pred ccccEEEeCCcccCCcCC-----CCHHHHHHHHHHHHHH
Q 034378 8 AFGPFKIDPRRDAVRFGD-----LTADETRDLWLTAQTV 41 (96)
Q Consensus 8 ~~g~~lIiPk~H~~~l~d-----l~~~e~~~l~~~~~~v 41 (96)
.|++++|+--+|.-+..+ ++++++.+++..+..+
T Consensus 103 ~p~EvViL~~~h~~~~~~~~~~~~~~~~~~~~~~~l~~i 141 (300)
T cd08621 103 NPGELVILNFSHILNTDNGDGRPFSAEEWEKIFDELEGI 141 (300)
T ss_pred CCCcEEEEEEEeccCCCcccccccCHHHHHHHHHHHHhh
Confidence 479999999888655433 4778888888876654
No 55
>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]
Probab=48.46 E-value=72 Score=20.57 Aligned_cols=63 Identities=16% Similarity=0.070 Sum_probs=39.0
Q ss_pred Ccc-cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCc------ceEEEEEeeCCC
Q 034378 17 RRD-AVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV------PHVHIHIVPRKA 80 (96)
Q Consensus 17 k~H-~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v------~H~HiHiiPr~~ 80 (96)
-+| +.++.+++.+++.+.-.+-+-+.++.+.. |+.-.++..+.-...|-++ .|+=+|=.|-+.
T Consensus 15 G~hi~~~lyg~d~~~l~d~e~l~~i~~eAa~~~-gati~~~~~~~f~p~GvSgvvliaESHitiHTwPEyg 84 (136)
T COG1586 15 GKHIYGELYGCDIDLLYDAERLEEILLEAAKIA-GATILNIAFHKFSPQGVSGVVLIAESHITIHTWPEYG 84 (136)
T ss_pred eeeeeeehhcCCHHHhccHHHHHHHHHHHHHHh-CCEEEEEEeEEecCCCeEEEEEEEeeeeeEecCCccC
Confidence 345 67899999888777666666555555542 4454555544432223222 699999999654
No 56
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=45.96 E-value=27 Score=25.58 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=25.7
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
..||+-++.||+.+|+..+.+.+.+..+.
T Consensus 6 ~~rhlis~~dls~~ei~~ll~~A~~~~~~ 34 (316)
T COG0540 6 KMRHLISIEDLSREELELLLDTADEFKAV 34 (316)
T ss_pred cccceechHhCCHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999988887765
No 57
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=43.77 E-value=34 Score=25.02 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=27.0
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
-.||.-++.|++++|+..|......+.+.-+.
T Consensus 5 ~~rhfL~l~D~t~~El~~ll~lA~~lK~~~~~ 36 (310)
T COG0078 5 AGRHFLSLLDFTPEELEALLDLAAELKAAKKA 36 (310)
T ss_pred ccccccchhcCCHHHHHHHHHHHHHHHHhhhc
Confidence 36888899999999999999998888776654
No 58
>PRK10870 transcriptional repressor MprA; Provisional
Probab=43.50 E-value=43 Score=21.99 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=22.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
+..++++|...|..+++++...+++.-
T Consensus 140 ~~~ls~~e~~~l~~~L~kl~~~l~~~~ 166 (176)
T PRK10870 140 WSALSTTEKDQLEQITRKLLSRLDQME 166 (176)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 568899999999999999988887643
No 59
>KOG4108 consensus Dynein light chain [Cell motility]
Probab=42.98 E-value=76 Score=21.32 Aligned_cols=44 Identities=20% Similarity=0.089 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEec--CCCCCCCcc
Q 034378 26 LTADETRDLWLTAQTVGTQLESYHKASSLAFAIQD--GPQAGQTVP 69 (96)
Q Consensus 26 l~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~--~~~~gq~v~ 69 (96)
-++++...|...+..-.+.--+.++.++|.++++. |+..||+++
T Consensus 93 Y~~~~a~~lt~elae~I~~rvK~l~~~RYK~Vv~V~ige~~gqGv~ 138 (174)
T KOG4108|consen 93 YDPDEALQLTKELAEEIKDRVKELGYPRYKYVVQVMIGEQLGQGVY 138 (174)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEEhhhhcchHH
Confidence 34555555555444433333344678888777543 455566653
No 60
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=42.71 E-value=22 Score=18.83 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=19.1
Q ss_pred EeCCcccCC-cCCCCHHHHHHHHHHHHHH
Q 034378 14 IDPRRDAVR-FGDLTADETRDLWLTAQTV 41 (96)
Q Consensus 14 IiPk~H~~~-l~dl~~~e~~~l~~~~~~v 41 (96)
=||-.-=.. ..+|+++|..+|.+++..+
T Consensus 22 RvPleGGGRLVvEl~~~Ea~~L~~~l~~v 50 (51)
T PF11314_consen 22 RVPLEGGGRLVVELNPDEAKELGEALKEV 50 (51)
T ss_pred EEecCCCcEEEEEeCHHHHHHHHHHHHhc
Confidence 345444322 3589999999999888754
No 61
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=42.34 E-value=48 Score=20.58 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=20.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
+..++++|...+..+++++...+.+.
T Consensus 115 ~~~l~~ee~~~l~~~l~~l~~~l~~~ 140 (144)
T PRK03573 115 LHGISAEEIEQLITLIAKLEKNIIEL 140 (144)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999888888777654
No 62
>PF06466 PCAF_N: PCAF (P300/CBP-associated factor) N-terminal domain; InterPro: IPR009464 This region is spliced out of Q92830 from SWISSPROT isoform 2. It is predicted to be of a mixed alpha/beta fold - though predominantly helical.; GO: 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.04 E-value=39 Score=24.02 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=25.7
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGTQLESYHKA 51 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~ 51 (96)
.|++.+.+++++|+..|+.++..+-.......+.
T Consensus 71 ~Hi~hL~~~seeeinrLl~mv~Dven~~~~~~~e 104 (252)
T PF06466_consen 71 FHISHLKNKSEEEINRLLGMVVDVENLFMCVHKE 104 (252)
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4889999999999988888777776555544433
No 63
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=41.23 E-value=38 Score=25.83 Aligned_cols=31 Identities=10% Similarity=0.235 Sum_probs=26.7
Q ss_pred EeCCcccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 14 IDPRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 14 IiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
...|+|+-++.|++.+|+..|...+..+.+.
T Consensus 84 ~~~~r~lLsi~Dls~~ei~~Ll~~A~~lK~~ 114 (429)
T PRK11891 84 FEGKPQLLSVDQFSRDSVEALFRVADVMQPI 114 (429)
T ss_pred ccCCCCccchhhCCHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999988877653
No 64
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=40.16 E-value=1e+02 Score=25.13 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 25 DLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 25 dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
||+.++..+|... ..+.+-...| -.+.+++|. .++..||+|+-+--|.-
T Consensus 95 El~~~~~~~L~~~---f~~~~~~~~g-~~~d~aiH~---~~~~NpHaHim~t~R~~ 143 (744)
T TIGR02768 95 ELNLEQNIELARR---FVRDHFVEKG-MVADWAIHD---DGDGNPHAHLLTTTRPL 143 (744)
T ss_pred hcCHHHHHHHHHH---HHHHHHHhCC-CeEEEEEec---CCCCCCEEEEEeeceee
Confidence 6777777665442 2222211112 135678886 35678999999887754
No 65
>PLN02342 ornithine carbamoyltransferase
Probab=39.06 E-value=45 Score=24.69 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.1
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
.+|+-++.|++.+|+..+.+.+..+.+..
T Consensus 45 ~r~~lsi~dls~~ei~~ll~~A~~lk~~~ 73 (348)
T PLN02342 45 PKHFLHIDDFDKEEILGLLDRAKEVKALL 73 (348)
T ss_pred CCCccchhhCCHHHHHHHHHHHHHHHhhh
Confidence 48899999999999999999988887643
No 66
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=39.02 E-value=42 Score=24.60 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=26.2
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
..||+-++.||+.+++..|.+.+..+.+..+
T Consensus 6 ~~r~~l~~~dls~~ei~~ll~~A~~~k~~~~ 36 (331)
T PRK02102 6 KGRSFLKLLDFTPEEIEYLIDLSIELKAAKK 36 (331)
T ss_pred CCCCccchHHCCHHHHHHHHHHHHHHHHHhh
Confidence 4589999999999999999999888876443
No 67
>PF14425 Imm3: Immunity protein Imm3
Probab=38.97 E-value=40 Score=21.14 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 24 GDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
.+|+.+|..+|..-..+|...|++.
T Consensus 85 ~eLt~eE~~dL~~R~nkVL~~l~~~ 109 (117)
T PF14425_consen 85 GELTQEEKEDLSQRINKVLDGLEKV 109 (117)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999998863
No 68
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=38.90 E-value=75 Score=19.46 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=31.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCC------cceEEEEEeeCCC
Q 034378 21 VRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQT------VPHVHIHIVPRKA 80 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~------v~H~HiHiiPr~~ 80 (96)
.++.+++.+-+.+...+-+.+.++.++ .|..-+...++.-+..|-+ -.|+=+|-.|-+.
T Consensus 9 ~dly~c~~~~L~d~~~l~~~l~~a~~~-~g~ti~~~~~h~F~p~Gvt~v~llaESHisiHTwPE~g 73 (112)
T TIGR03330 9 VDLYGCDPEKLDDVEFIEEILLEAAKV-AGATLVASHFHKFSPGGVSGVVLLAESHISIHTWPEYG 73 (112)
T ss_pred EEEeCCChHHCCCHHHHHHHHHHHHHH-cCCEEEEEEEEEcCCCcEEEEEEecccEEEEEeccCCC
Confidence 467777776555554444444444443 3444344433333222211 2699999999653
No 69
>PF11950 DUF3467: Protein of unknown function (DUF3467); InterPro: IPR021857 This entry is represented by Bacteriophage 92, 0rf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.
Probab=38.71 E-value=72 Score=18.77 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 034378 24 GDLTADETRDLWLTAQTVGTQLESYHKA 51 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~~~~~ 51 (96)
--+++.....|+.++....+..++.||.
T Consensus 62 VimsP~~AKrL~~aL~~~l~~YE~~fG~ 89 (92)
T PF11950_consen 62 VIMSPQHAKRLLKALQQNLQKYEQRFGE 89 (92)
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3488999999999999999999999986
No 70
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=37.87 E-value=42 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.2
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
.+|+-++.|++.+|+..+.+.+..+.+.
T Consensus 6 ~k~ll~~~dls~~ei~~ll~~A~~~k~~ 33 (311)
T PRK14804 6 VKHLISWEDWSDSEILDLLDFAVHVKKN 33 (311)
T ss_pred CCCcCchhhCCHHHHHHHHHHHHHHHhh
Confidence 5788899999999999999988887653
No 71
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=36.82 E-value=1.4e+02 Score=21.31 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=34.2
Q ss_pred CcccCCc-CCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCC
Q 034378 17 RRDAVRF-GDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRK 79 (96)
Q Consensus 17 k~H~~~l-~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~ 79 (96)
.|+++++ ..++++.+.++...+++..+.+-+....+ ..+..|+++-++++|..
T Consensus 217 eR~~S~lT~~i~~~~~~~i~~~i~~fRk~i~~i~~~~----------~~~~~Vy~LN~qlFPlt 270 (271)
T TIGR02147 217 ERDVSTVTFGISEEAYKEIVKKIQEFRKEVLAIATKD----------KEEDRVFQLNIQLFPLS 270 (271)
T ss_pred ccccceeeEecCHHHHHHHHHHHHHHHHHHHHHHhcC----------CCcCeEEEEeeeeeccC
Confidence 4566665 46777777777777777766665432211 12356889999999963
No 72
>COG3938 Proline racemase [Amino acid transport and metabolism]
Probab=36.75 E-value=45 Score=24.52 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=27.9
Q ss_pred ccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 034378 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHK 50 (96)
Q Consensus 10 g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~ 50 (96)
.+.+|-|+++.. +|.+++..+|.....++.+++++.++
T Consensus 174 ~yaiVd~~~~g~---~l~~~~A~~L~~~g~~i~~a~n~~~~ 211 (341)
T COG3938 174 FYAIVDAQANGF---DLAPDEAGELVALGVKIRQALNEQLD 211 (341)
T ss_pred EEEEEehHHcCc---ccCccchHHHHHhHHHHHHHHhhhcC
Confidence 356778888754 45677777778888888888887765
No 73
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=36.74 E-value=94 Score=19.56 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=32.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCC------cceEEEEEeeCCC
Q 034378 21 VRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQT------VPHVHIHIVPRKA 80 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~------v~H~HiHiiPr~~ 80 (96)
.++.+++.+-+.+...+-+.+.++.++ .|..-+...++.-+..|-+ -.|+=+|-.|-+.
T Consensus 10 vdlygC~~~~L~d~~~l~~~l~~a~~~-~g~til~~~~h~F~p~GvTgv~llaESHisIHTwPE~g 74 (127)
T PRK03124 10 AELYGCDFDKLNDMELIEDIMVDAALE-AGAEVREVAFHKFSPQGVSGVVVISESHLTIHTWPELG 74 (127)
T ss_pred EEEeCCChHHcCCHHHHHHHHHHHHHH-cCCeEEEEEeEEcCCCcEEEEEEeeccEEEEEeCccCC
Confidence 467777776555555444444444444 2444444444433222211 1699999999653
No 74
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=36.72 E-value=46 Score=24.02 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=23.9
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
+|.-++.|++.+|+..+.+.+..+.+.-
T Consensus 1 k~ll~i~dls~~ei~~ll~~A~~~k~~~ 28 (301)
T TIGR00670 1 RHLISISDLSREEIELLLQTARELEQVL 28 (301)
T ss_pred CCcCchhhCCHHHHHHHHHHHHHHHhhh
Confidence 5778899999999999999888887643
No 75
>PHA02698 hypothetical protein; Provisional
Probab=36.56 E-value=62 Score=18.85 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 034378 26 LTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 26 l~~~e~~~l~~~~~~v~~~l~ 46 (96)
|+.+|..+|+..+..+++.|+
T Consensus 66 LsqEEMdELl~EledlarLL~ 86 (89)
T PHA02698 66 LSQEEMDELLVELEDLARLLS 86 (89)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666665554
No 76
>PF08848 DUF1818: Domain of unknown function (DUF1818); InterPro: IPR014947 This entry represents a small family of uncharacterised cyanobacterial proteins. ; PDB: 2IT9_A 2NVN_A.
Probab=35.87 E-value=44 Score=21.00 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh----cCCCceEEEEecCCC----CCCCcceEEEEEe
Q 034378 24 GDLTADETRDLWLTAQTVGTQLESY----HKASSLAFAIQDGPQ----AGQTVPHVHIHIV 76 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~~----~~~~~~~i~~~~~~~----~gq~v~H~HiHii 76 (96)
.+|++.|+.+|.+++.++.+.+... -+.+++.+-...++. .|. -..+.+++|
T Consensus 29 iELT~~E~~~f~~Ll~~L~~q~~~i~~eLM~EE~I~lE~E~~~~W~eleG~-~~~~sLr~I 88 (117)
T PF08848_consen 29 IELTEAEFNDFCRLLQQLAEQMQAIADELMDEESITLEAESDLWWMELEGY-PHAWSLRLI 88 (117)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHHHCCHTTSSTTSEEEEEEEETTEEEEEEEE-TTEEEEEEE
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHhcchhhheeeeccccEEEEeccc-cCceEEEEE
Confidence 4799999999999999998877644 234566665544431 121 135666655
No 77
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=35.27 E-value=48 Score=23.93 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=25.2
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
.||+-++.|++.+|+..+.+.+..+.+.-
T Consensus 5 ~r~~l~~~d~s~~ei~~l~~~A~~lk~~~ 33 (305)
T PRK00856 5 MKHLLSIEDLSREEIELLLDTAEEFKEVL 33 (305)
T ss_pred CCcCcchhhCCHHHHHHHHHHHHHHHhhh
Confidence 48899999999999999999988887643
No 78
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=34.76 E-value=52 Score=24.10 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=25.3
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
.||+-++.||+.+|+..|.+.+..+.+..
T Consensus 6 ~r~~ls~~dls~~ei~~ll~~A~~~k~~~ 34 (332)
T PRK04284 6 NRSFLTLLDFTPKEIEYLLDLSEDLKRAK 34 (332)
T ss_pred CCCccchHhCCHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999988887643
No 79
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=34.25 E-value=53 Score=24.05 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=25.2
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
.||+-++.|++.+|+..|.+.+..+.+..
T Consensus 7 ~rhlls~~dls~~ei~~ll~~A~~~k~~~ 35 (334)
T PRK01713 7 NRHLLSLVNHTEREIKYLLDLSRDLKRAK 35 (334)
T ss_pred CCCccchHhCCHHHHHHHHHHHHHHHhhh
Confidence 48999999999999999999998887643
No 80
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=33.99 E-value=52 Score=23.73 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.5
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
.+|+-++.|++.+|+..+.+.+..+.+...
T Consensus 4 ~k~ll~i~dls~~~l~~ll~~A~~~k~~~~ 33 (304)
T PRK00779 4 GRHFLSLDDLSPEELEELLDLAAELKKKRK 33 (304)
T ss_pred CCcEeehhhCCHHHHHHHHHHHHHHHhHhh
Confidence 478889999999999999999988876544
No 81
>PF08751 TrwC: TrwC relaxase; InterPro: IPR014862 Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix. ; PDB: 1ZM5_A 1S6M_A 1OSB_C 2CDM_C 1OMH_A 1QX0_A 3L57_A 3L6T_A 2A0I_A 2Q7U_A ....
Probab=33.96 E-value=1.4e+02 Score=21.39 Aligned_cols=19 Identities=11% Similarity=-0.135 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 034378 30 ETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 30 e~~~l~~~~~~v~~~l~~~ 48 (96)
......++++..+..+++.
T Consensus 107 i~~Ah~~AV~~tl~~lE~~ 125 (296)
T PF08751_consen 107 IIEAHREAVRETLAYLEKE 125 (296)
T ss_dssp HHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456666777777777774
No 82
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=33.85 E-value=2.5e+02 Score=24.03 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCCc--eEEEEecCCC-CCCCcceEEEEEeeCCCCCCCCCCCcccc
Q 034378 25 DLTADETRDLWLTAQTVGTQLESYHKASS--LAFAIQDGPQ-AGQTVPHVHIHIVPRKAASSEENDGNVSW 92 (96)
Q Consensus 25 dl~~~e~~~l~~~~~~v~~~l~~~~~~~~--~~i~~~~~~~-~gq~v~H~HiHiiPr~~~d~~~~~~~~~~ 92 (96)
+|+.++..+|.... . ++.|...+ +-+.+|.... .|+..+|+|+-+--|.-+.-.+|.....|
T Consensus 95 EL~~eq~~~L~~~f---~---~~~~~~~G~~ad~aiH~~~~~dg~~NpHaHim~T~R~~~~~G~g~K~r~w 159 (988)
T PRK13889 95 EMTQAQGIELARDF---V---QAEFVDRGMIADLNVHWDIGEDGMAKPHAHVMLTMRAVDENGFGAKVRDW 159 (988)
T ss_pred hcCHHHHHHHHHHH---H---HHHHhcCCceEEEEeecccccCCCCCCeEEEEeccCccCCCCCCCccccc
Confidence 67777777665422 1 12222222 3566776432 36668999988876654322234444444
No 83
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=33.83 E-value=88 Score=20.58 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=18.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 034378 23 FGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
+-||+.+|..+|....+++.+-
T Consensus 120 ~RdLT~~E~~EL~~f~~k~~~Y 141 (159)
T cd00225 120 ARDLTPKEIAELKTFEKKQTAY 141 (159)
T ss_pred eccCCHHHHHHHHHHHHHHHhh
Confidence 5699999999999888877543
No 84
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=33.44 E-value=1.3e+02 Score=19.18 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCCCCCCCC
Q 034378 33 DLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEENDG 88 (96)
Q Consensus 33 ~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d~~~~~~ 88 (96)
.--...+.+++.|...||.+...+.+-. .+.. -=||-|+++...+.-
T Consensus 82 ~kE~~ak~vA~~L~~rF~vea~yfSV~g----s~~~-----D~IP~Y~~~~~e~hp 128 (132)
T PF14468_consen 82 KKEAMAKHVAGWLRHRFGVEAGYFSVLG----SQDY-----DGIPSYNGPHDENHP 128 (132)
T ss_pred HHHHHHHHHHHHHHHHhCcceeEEEecC----CCCC-----CcCcccCCchhhccC
Confidence 3344667888999999998865554421 1211 225766665554443
No 85
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=33.32 E-value=56 Score=23.59 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.5
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
||+-++.|++.+|+..+.+.+..+.+.
T Consensus 2 r~ll~~~dl~~~ei~~ll~~A~~~k~~ 28 (302)
T PRK14805 2 KHLLSIKELTQQQLLDLLALAKTIKAN 28 (302)
T ss_pred CccCchhhCCHHHHHHHHHHHHHHHhh
Confidence 688899999999999999988887764
No 86
>PF02686 Glu-tRNAGln: Glu-tRNAGln amidotransferase C subunit; InterPro: IPR003837 Glu-tRNAGln amidotransferase is a heterotrimeric enzyme that is required for correct decoding of glutamine codons during translation. The Glu-tRNA Gln amidotransferase enzyme is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln []. This activity supplements the lack of glutaminyl-tRNA synthetase activity in Gram-positive eubacteria, cyanobacteria, archaea, and organelles [].; GO: 0006450 regulation of translational fidelity; PDB: 2DQN_C 3IP4_C 2G5I_C 2F2A_C 2G5H_C 2DF4_C 3AL0_C 3KFU_G 3H0R_I 3H0L_U ....
Probab=33.01 E-value=77 Score=17.23 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcC
Q 034378 26 LTADETRDLWLTAQTVGTQLESYHK 50 (96)
Q Consensus 26 l~~~e~~~l~~~~~~v~~~l~~~~~ 50 (96)
|+++|...+..-+..+.+.+++.-.
T Consensus 1 l~eeE~~~~~~~l~~il~~~~~l~~ 25 (72)
T PF02686_consen 1 LTEEELEKLTKQLNDILDYVEKLQE 25 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999988887543
No 87
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=33.00 E-value=56 Score=23.70 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=23.0
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHH
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGT 43 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~ 43 (96)
+|+-++.|++.+|+..|...+.++.+
T Consensus 6 ~~~l~~~dls~~ei~~ll~~A~~~k~ 31 (310)
T PRK13814 6 LHLLNMRSLTRDHIEKLIQRANYFLT 31 (310)
T ss_pred cCcCChhhCCHHHHHHHHHHHHHHHh
Confidence 58888999999999999999888765
No 88
>PF09830 ATP_transf: ATP adenylyltransferase; InterPro: IPR019200 Diadenosine 5',5'''-P-1,P-4-tetraphosphate (Ap4A) and related diadenosine oligoposphates such as Ap3A are important intracellular and extracellular signalling molecules in prokaryotes and eukaryotes []. They are implicated in the regulation of many vital celluar functions including stress response, cell division and apoptosis. Synthesis primarily occurs via aminoacyl-tRNA synthetases adding the AMP moiety of an aminoacyl-AMP to an acceptor nucleotide, and is an inevitable byproduct of protein synthesis. The concentration of these compounds must thus be controlled both to ensure the proper regulation of various celluar processes, but also to prevent their buildup to potentially toxic levels. This domain is found in a group of ATP adenylyltransferases found in bacteria and lower eukaryotes which catalyse the interconversion of Ap4A to ATP and ADP [, , ]. While these enzymes are thought to act primarily to break down Ap4A, there is evidence to suggest that in some circumstances they may also act in a biosynthetic role. Some variability in substrate range is apparent eg the cyanobacterial enzyme can also utilise Ap3A as a substrate, while the Saccharomyces enzymes apparently cannot.; GO: 0003877 ATP adenylyltransferase activity
Probab=32.50 E-value=56 Score=17.86 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=10.0
Q ss_pred EEEEeeCCCCCC
Q 034378 72 HIHIVPRKAASS 83 (96)
Q Consensus 72 HiHiiPr~~~d~ 83 (96)
++.|+||..+.+
T Consensus 10 wm~lvPR~~~~~ 21 (62)
T PF09830_consen 10 WMMLVPRSREGF 21 (62)
T ss_pred eEEEEecccccc
Confidence 588999988766
No 89
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=32.26 E-value=1.3e+02 Score=19.37 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=31.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCC------cceEEEEEeeCCC
Q 034378 21 VRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQT------VPHVHIHIVPRKA 80 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~------v~H~HiHiiPr~~ 80 (96)
.++.+++.+-+.+...+-+.+.++.+. .|..-+....+.-+..|-+ -.|+=+|-.|-+.
T Consensus 10 vDlygc~~~~L~d~e~l~~~l~~Aa~~-~gatil~~~~h~F~P~GvTgv~lLaESHisIHTwPE~g 74 (139)
T PRK04025 10 VEAAGCDPEVLGDADRIREIFLEAAKR-GNMEVKASYFFKFSPTGVSGVVIVAESHISVHTWPEKG 74 (139)
T ss_pred EEEeCCChHHcCCHHHHHHHHHHHHHH-cCCeEEEEEEEEcCCCcEEEEEEeccceEEEEecccCC
Confidence 467777776655555444444444443 3444344443333222211 2699999999653
No 90
>KOG1504 consensus Ornithine carbamoyltransferase OTC/ARG3 [Amino acid transport and metabolism]
Probab=32.15 E-value=68 Score=23.32 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=26.6
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
-||.-++.|++.+|+.-+....+.+...++.
T Consensus 39 ~r~llsikd~s~eeik~ll~rase~K~~~Kq 69 (346)
T KOG1504|consen 39 LRDLLSIKDFSTEEIKTLLDRASEVKALLKQ 69 (346)
T ss_pred hhheeeeccCChHHHHHHHHHHHHHHHHHHh
Confidence 3677789999999999999988888888886
No 91
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=31.82 E-value=57 Score=23.98 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=24.5
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
.||+-++.|++.+|+..+...+..+.+.
T Consensus 5 ~r~~L~~~dls~~el~~ll~~A~~lk~~ 32 (338)
T PRK08192 5 GSHILSVNQLDRDAIQRIFNVADRMEPY 32 (338)
T ss_pred CCCCCchHhCCHHHHHHHHHHHHHHHhh
Confidence 4899999999999999999998887753
No 92
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=31.73 E-value=67 Score=23.59 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=24.8
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
.||+-++.|++.+|+..+.+.+..+.+.-
T Consensus 6 ~r~ll~~~d~s~~ei~~ll~~A~~~k~~~ 34 (336)
T PRK03515 6 QRHFLRLLDFTPAELNSLLQLAAKLKADK 34 (336)
T ss_pred CCCccchhhCCHHHHHHHHHHHHHHHhhh
Confidence 38999999999999999999888877643
No 93
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=31.70 E-value=86 Score=16.57 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=25.9
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCC--CceEEEEecCC
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGTQLESYHKA--SSLAFAIQDGP 62 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~--~~~~i~~~~~~ 62 (96)
-++.-+...++++..+|++.+. +++.+.++. +.+.+.++.-+
T Consensus 4 i~i~~~~Grs~EqK~~L~~~it---~a~~~~~~~p~~~v~V~i~ev~ 47 (60)
T PRK02289 4 VRIDLFEGRSQEQKNALAREVT---EVVSRIAKAPKEAIHVFINDMP 47 (60)
T ss_pred EEEEECCCCCHHHHHHHHHHHH---HHHHHHhCcCcceEEEEEEEeC
Confidence 3444455678888888776554 555555665 46777765543
No 94
>PRK09362 phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed
Probab=31.68 E-value=54 Score=22.98 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=32.8
Q ss_pred EeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEE
Q 034378 14 IDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFA 57 (96)
Q Consensus 14 IiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~ 57 (96)
.+...|+..+.-++++++.++.+...++.+.+.+.+...++.++
T Consensus 131 ~i~~~~~~~~~~~t~~e~~~i~~~al~i~~~l~~~~~~~Gl~Lv 174 (238)
T PRK09362 131 MINEDHILALGWATPEELAEIKELALKINDVLKGLFAGAGIRLV 174 (238)
T ss_pred CCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 34556666566788999999999999999999988765555443
No 95
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=31.19 E-value=70 Score=23.05 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.7
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
+|+-++.|++.+|+..+...+..+.+.-
T Consensus 1 k~ll~~~d~s~~~i~~ll~~A~~~k~~~ 28 (304)
T TIGR00658 1 RHLLSLLDLSPEEIRYLLQLAKKLKKGK 28 (304)
T ss_pred CCcCchhhCCHHHHHHHHHHHHHHhhhh
Confidence 5788899999999999999888886643
No 96
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=31.06 E-value=70 Score=23.52 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=25.1
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
.||+-++.|++.+|+..+.+.+..+.+..
T Consensus 6 ~r~~l~~~dls~~ei~~ll~~A~~~k~~~ 34 (334)
T PRK12562 6 KKHFLKLLDFTPAELNSLLQLAAKLKADK 34 (334)
T ss_pred CCCcCchHhCCHHHHHHHHHHHHHHHhhh
Confidence 58999999999999999999988886643
No 97
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=31.06 E-value=1.1e+02 Score=17.56 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=28.8
Q ss_pred CCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 6 QYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 6 p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
+..+|-.+++=--. -++-++++|..+..++++.+.+.+.
T Consensus 35 ~~~vGD~VLVH~G~--Ai~~ide~eA~e~l~~l~el~~~~~ 73 (76)
T TIGR00074 35 EVKVGDYVLVHVGF--AISVLDEEEARETLDALQELFDAVE 73 (76)
T ss_pred CCCCCCEEEEecCh--hhhhCCHHHHHHHHHHHHHHHHHHh
Confidence 45577777763322 2677899999999999999987765
No 98
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=30.32 E-value=1.1e+02 Score=19.69 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 24 GDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
.+|+++|...|.+.++.+.+.+++.+
T Consensus 146 ~~L~~~E~~~l~~sa~~l~~~i~~~~ 171 (174)
T PF02866_consen 146 LPLSEEEQEKLKESAKELKKEIEKGL 171 (174)
T ss_dssp BSSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999888887643
No 99
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=30.13 E-value=74 Score=24.02 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=24.8
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
-||.-++.|++.+|+..|.+.+..+.+..
T Consensus 20 ~k~lL~~~dls~~ei~~Ll~~A~~~k~~~ 48 (395)
T PRK07200 20 EKDFLLTWEKTPDELKAVLDVADALRALR 48 (395)
T ss_pred CCccCchhhCCHHHHHHHHHHHHHHHhhh
Confidence 47889999999999999999888887643
No 100
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=29.30 E-value=65 Score=23.63 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=23.5
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGT 43 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~ 43 (96)
-||+-++.|++.+|+..+.+.+..+.+
T Consensus 3 ~k~ll~i~dl~~~ei~~ll~~A~~~k~ 29 (335)
T PRK04523 3 LKHFLNTQDWSRAELDALLTQAAAFKR 29 (335)
T ss_pred CcCcCchhhCCHHHHHHHHHHHHHHHh
Confidence 388999999999999999998888754
No 101
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=28.64 E-value=89 Score=24.24 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=46.4
Q ss_pred CCCCCCc-cccEEEeCCccc-----CCc--CCCCHHHHHHHHHHHHHHHHHHHhhcC---CC--ceEEEEecCCC----C
Q 034378 2 SSIEQYA-FGPFKIDPRRDA-----VRF--GDLTADETRDLWLTAQTVGTQLESYHK---AS--SLAFAIQDGPQ----A 64 (96)
Q Consensus 2 ~~~~p~~-~g~~lIiPk~H~-----~~l--~dl~~~e~~~l~~~~~~v~~~l~~~~~---~~--~~~i~~~~~~~----~ 64 (96)
|..+|+. .+|+||+----- ..| .+|+.+++.++...+-+.++.|.+... ++ -||++.+.|.. -
T Consensus 229 P~PePIlLk~hVLVM~FlGrdgw~aPkLKd~~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADLSEfN~LyhdG~lyiIDV 308 (520)
T KOG2270|consen 229 PCPEPILLKNHVLVMEFLGRDGWAAPKLKDASLSTSKARELYQQCVRIMRRLYQKCRLVHADLSEFNLLYHDGKLYIIDV 308 (520)
T ss_pred CCCCceeeecceEeeeeccCCCCcCcccccccCChHHHHHHHHHHHHHHHHHHHHhceeccchhhhhheEECCEEEEEEc
Confidence 5556654 678888732111 111 235666777777776666666665432 33 58999998874 4
Q ss_pred CCCcceEEEEE
Q 034378 65 GQTVPHVHIHI 75 (96)
Q Consensus 65 gq~v~H~HiHi 75 (96)
+|+|.|=|=|-
T Consensus 309 SQSVE~DHP~a 319 (520)
T KOG2270|consen 309 SQSVEHDHPHA 319 (520)
T ss_pred cccccCCChhH
Confidence 89998877653
No 102
>PF06831 H2TH: Formamidopyrimidine-DNA glycosylase H2TH domain; InterPro: IPR015886 This entry represents a helix-2turn-helix DNA-binding domain found in DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Most damage to bases in DNA is repaired by the base excision repair pathway []. These enzymes are primarily from bacteria, and have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC). Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines [, ]. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above (3.2.2 from EC, 4.2.99.18 from EC), but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine []. These protein contains three structural domains: an N-terminal catalytic core domain, a central helix-two turn-helix (H2TH) module and a C-terminal zinc finger []. The N-terminal catalytic domain and the C-terminal zinc finger straddle the DNA with the long axis of the protein oriented roughly orthogonal to the helical axis of the DNA. Residues that contact DNA are located in the catalytic domain and in a beta-hairpin loop formed by the zinc finger []. This entry represents the central domain containing the DNA-binding helix-two turn-helix domain [].; GO: 0003684 damaged DNA binding, 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0008270 zinc ion binding, 0016799 hydrolase activity, hydrolyzing N-glycosyl compounds, 0006289 nucleotide-excision repair; PDB: 3GQ3_A 3JR5_A 3SAT_A 3GPX_A 2F5Q_A 3SBJ_A 3U6S_A 3SAU_A 3SAR_A 2F5P_A ....
Probab=28.38 E-value=75 Score=18.63 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=19.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
..+|+++++..|...++++.+.--+
T Consensus 59 ~~~L~~~~~~~l~~~~~~vl~~ai~ 83 (92)
T PF06831_consen 59 ASSLSEEELRRLHEAIKRVLREAIE 83 (92)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999888765443
No 103
>TIGR00081 purC phosphoribosylaminoimidazole-succinocarboxamide synthase. Check length. Longer versions may be multifunctional enzymes.
Probab=28.18 E-value=71 Score=22.38 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=30.9
Q ss_pred eCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEE
Q 034378 15 DPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFA 57 (96)
Q Consensus 15 iPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~ 57 (96)
++..|...+.=++++|+.++.+.+.++.+.+.+.+...++.++
T Consensus 134 i~~~~~~~~~~~~~~e~~~i~~~a~~v~~~l~~~~~~~gl~Lv 176 (237)
T TIGR00081 134 LNESYAEALGLATEEELERIKELALKVNEVLKKYFDEKGIILV 176 (237)
T ss_pred CCHhHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 3444444455578889999999999999999888765555443
No 104
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=27.91 E-value=1.6e+02 Score=18.42 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=31.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCC------cceEEEEEeeCCC
Q 034378 21 VRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQT------VPHVHIHIVPRKA 80 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~------v~H~HiHiiPr~~ 80 (96)
.++.+++.+-+.+...+-+.+.++.++ .|..-+...++.-+..|-+ -.|+=+|-.|-+.
T Consensus 12 ~dlygc~~~~L~d~~~l~~~l~~aa~~-~g~tiv~~~~h~F~p~GvTgv~llaESHisIHTwPE~g 76 (123)
T PRK01706 12 VDLWGVDFSLLDDMYFLEHHLVEAADL-SGAHVLNVSTKEFDPQGVTVLVLLSESHLSIHTYPEKN 76 (123)
T ss_pred EEEeCCChHHcCCHHHHHHHHHHHHHH-cCCeEEEEEEEEcCCCcEEEEEEeeccEEEEEeCccCC
Confidence 467777766555555433333333333 3455444444443322211 1699999999653
No 105
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=27.80 E-value=83 Score=21.29 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=19.8
Q ss_pred ccEEEeCCcccCCcCCCCHHHHHHHH
Q 034378 10 GPFKIDPRRDAVRFGDLTADETRDLW 35 (96)
Q Consensus 10 g~~lIiPk~H~~~l~dl~~~e~~~l~ 35 (96)
--.+|+|.|... -.+|+++++.+|.
T Consensus 147 ~rYlVLP~RP~g-te~lsEeqLa~lV 171 (185)
T TIGR01323 147 SRYLVLPQRPAG-TEHMSEEQLQQLV 171 (185)
T ss_pred eEEEEEecCCCC-CCCCCHHHHHHhh
Confidence 346999999986 4789999988764
No 106
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=27.66 E-value=77 Score=24.92 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.7
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
.||+-++.|++.+|+..|.+.+..+.+..+
T Consensus 7 grhlLsi~Dls~eei~~Ll~~A~~lK~~~~ 36 (525)
T PRK13376 7 GRTLAVIEDLSVEEQLFLYEKTRELKQRWY 36 (525)
T ss_pred CCCCcchHhCCHHHHHHHHHHHHHHHhhhh
Confidence 389999999999999999999988876544
No 107
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=27.50 E-value=1.6e+02 Score=18.46 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=32.9
Q ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecC-CCCCCC------cceEEEEEeeCCC
Q 034378 20 AVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDG-PQAGQT------VPHVHIHIVPRKA 80 (96)
Q Consensus 20 ~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~-~~~gq~------v~H~HiHiiPr~~ 80 (96)
+.++.+++.+-+.+...+-+.+.++.+. .|..-+...++.- |..|-+ -.|+=+|-.|-+.
T Consensus 20 i~DlygC~~~~L~d~~~l~~~l~~aa~~-~g~til~~~~h~F~p~~GvT~v~lLaESHisIHTwPE~g 86 (127)
T PRK00458 20 YGNLYDCDEEVLKDEERLEQIVKEAAKI-ANMTLLDIKSWKFGKKGGVSVIALVLESHIAIHTWPEYN 86 (127)
T ss_pred EEEEeCCChHHcCCHHHHHHHHHHHHHH-cCCEEEEEEEEECCCCCCEEEEEEecccEEEEEeCcCCC
Confidence 3568888777655555444444444433 3444444444433 212322 1699999999654
No 108
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=27.32 E-value=1e+02 Score=18.08 Aligned_cols=25 Identities=8% Similarity=0.104 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
++-+++++..+-.++.+++.+.+..
T Consensus 53 i~~idEeeAketle~l~e~~~~~~~ 77 (82)
T COG0298 53 MSKIDEEEAKETLEALQEMFDAEGE 77 (82)
T ss_pred EeecCHHHHHHHHHHHHHHHHhhcc
Confidence 6788999999999999999988753
No 109
>PRK14826 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=27.23 E-value=1.1e+02 Score=21.06 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=25.0
Q ss_pred EEEeCCcccCCcCCCCHHHHHHHH---HHHHHHHHHHHh
Q 034378 12 FKIDPRRDAVRFGDLTADETRDLW---LTAQTVGTQLES 47 (96)
Q Consensus 12 ~lIiPk~H~~~l~dl~~~e~~~l~---~~~~~v~~~l~~ 47 (96)
-+.+|..+-.++.+|+.+|...+. ++++++.+.|++
T Consensus 180 pIF~p~g~~kTfAEm~~eeKn~iSHR~kAl~kl~~~l~~ 218 (222)
T PRK14826 180 PIFRVEATGKTFAEMSTEEKNTISHRALAVQKAVKFLRT 218 (222)
T ss_pred eeEEECCCCcchhhCCHHHHhhhCHHHHHHHHHHHHHHH
Confidence 466788878889999999866554 455555555544
No 110
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=27.18 E-value=1.5e+02 Score=19.06 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=32.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCC------CcceEEEEEeeCCC
Q 034378 21 VRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQ------TVPHVHIHIVPRKA 80 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq------~v~H~HiHiiPr~~ 80 (96)
.++.+++.+-+.+...+-+.+.++.+. .|..-+....+.-...|- .-.|+=+|-.|-+.
T Consensus 23 vdlygc~~~~L~d~~~l~~~l~~Aa~~-~gativ~~~~h~F~P~GvTgv~lLaESHisIHTwPE~g 87 (139)
T PRK02770 23 LELYDCDAEKLNDEAFLRTTLTEAAKR-AGATLLNLITHRFEPQGVTALALLAESHISIHTWPESG 87 (139)
T ss_pred EEEeCCChHHCCCHHHHHHHHHHHHHH-cCCEEEEEEeEEcCCCeEEEEEEecccEEEEEeCcCCC
Confidence 468888877666555555544444443 344433333333221221 12699999999654
No 111
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=27.18 E-value=80 Score=20.90 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=9.9
Q ss_pred eEEEEecCCCCCCCcceEE
Q 034378 54 LAFAIQDGPQAGQTVPHVH 72 (96)
Q Consensus 54 ~~i~~~~~~~~gq~v~H~H 72 (96)
++..+|..|..|+ ++|++
T Consensus 82 ~~A~cnF~pipG~-iYhLY 99 (159)
T PF10504_consen 82 HHAKCNFEPIPGQ-IYHLY 99 (159)
T ss_pred hhcccCceecCCC-EEEEE
Confidence 4555666666665 44444
No 112
>PF09545 RE_AccI: AccI restriction endonuclease; InterPro: IPR019054 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease AccI, which recognises and cleaves the double-stranded sequence GT^MKAC.
Probab=27.07 E-value=1.8e+02 Score=21.44 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCC-------CCCCcceEEEEEee
Q 034378 26 LTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQ-------AGQTVPHVHIHIVP 77 (96)
Q Consensus 26 l~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~-------~gq~v~H~HiHiiP 77 (96)
-..+++.+++++++.+..++++.-..+-..+....... .-..|+|..+|++=
T Consensus 209 ~~~~~l~e~~~l~K~lK~~ik~l~krdyLSit~K~ED~~~~~~W~~~~nVp~~~~qvFf 267 (366)
T PF09545_consen 209 SSDQRLIEVMNLFKMLKTAIKELQKRDYLSITPKEEDRKPVNKWIETNNVPHFYWQVFF 267 (366)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhccceeeccchHhHHHHHHHHHHcCCCeEEeeeeh
Confidence 35677889999999998888876655533332211100 12458999999874
No 113
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=27.02 E-value=83 Score=23.37 Aligned_cols=29 Identities=17% Similarity=0.053 Sum_probs=24.6
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
.+|+-++.|++.+|+..+...+..+.+..
T Consensus 3 ~r~~ls~~d~s~~ei~~ll~~A~~lk~~~ 31 (357)
T TIGR03316 3 EKDFILTWEWTRDELDTVLDVAFDLKRLR 31 (357)
T ss_pred CCCcCchhhCCHHHHHHHHHHHHHHHhhh
Confidence 47888999999999999999888886643
No 114
>PF06194 Phage_Orf51: Phage Conserved Open Reading Frame 51; InterPro: IPR009338 This entry is represented by the Staphylococcus phage PVL (bacteriophage phi-PVL), Orf51. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.80 E-value=1.3e+02 Score=17.39 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=19.7
Q ss_pred HHHHhhcCCCceEEEEecCCCC----CCCcceEEEEEeeCCC
Q 034378 43 TQLESYHKASSLAFAIQDGPQA----GQTVPHVHIHIVPRKA 80 (96)
Q Consensus 43 ~~l~~~~~~~~~~i~~~~~~~~----gq~v~H~HiHiiPr~~ 80 (96)
+.|+..||..+|-+- .+.+.+ =++++=+|=|+.|.++
T Consensus 8 ~~l~qfFgsKrYLYQ-d~~kVAH~HvVN~~Yy~HGH~kt~~~ 48 (80)
T PF06194_consen 8 EYLNQFFGSKRYLYQ-DNEKVAHIHVVNGTYYFHGHHKTMWK 48 (80)
T ss_pred HHHHHHhCcceeeee-cCceEEEEEEEcceEEEeeeeccccc
Confidence 456677777666543 111111 1334555667777766
No 115
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=26.64 E-value=1.5e+02 Score=18.73 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=31.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCC------cceEEEEEeeCCC
Q 034378 21 VRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQT------VPHVHIHIVPRKA 80 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~------v~H~HiHiiPr~~ 80 (96)
.++.+++.+-+.+...+-+.+.++.++ .|.+-+...++.-+..|-+ -.|+=+|-.|-+.
T Consensus 11 vdlygc~~~~L~D~~~l~~~l~~aa~~-~g~tiv~~~~h~F~p~GvTgv~lLaESHisIHTwPE~g 75 (131)
T PRK01236 11 ADLYGVDPELIDRVEDIREILEGAVKY-AELTKISSHYYQFNPHGATGVVLLAESHISIHTWPEYG 75 (131)
T ss_pred EEEeCCChHHcCCHHHHHHHHHHHHHH-CCCEEEEEEEEEcCCCcEEEEEEeeccEEEEEeCccCC
Confidence 467788777655555444444444443 2333333333332212211 2699999999653
No 116
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=26.15 E-value=22 Score=26.72 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred cCCcCCCCHHHHHHHHHHHHHHHH
Q 034378 20 AVRFGDLTADETRDLWLTAQTVGT 43 (96)
Q Consensus 20 ~~~l~dl~~~e~~~l~~~~~~v~~ 43 (96)
+++|.++.++|+.++|+.+..+.+
T Consensus 75 vsTLl~M~deELDdmM~sL~~ifR 98 (386)
T PF01698_consen 75 VSTLLNMTDEELDDMMNSLSQIFR 98 (386)
T ss_dssp ------------------------
T ss_pred HHHHhcccHHHHHHHHHHHHHHhh
Confidence 467889999999999998888765
No 117
>PF09509 Hypoth_Ymh: Protein of unknown function (Hypoth_ymh); InterPro: IPR012654 This entry consists of a relatively rare prokaryotic protein family (about 8 occurrences per 200 genomes). Genes for members of this family appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. Their function is unknown.
Probab=25.94 E-value=1.2e+02 Score=18.92 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=20.2
Q ss_pred CCcccCCc-CCCCHHHHHHHHHHHHHHHHH
Q 034378 16 PRRDAVRF-GDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 16 Pk~H~~~l-~dl~~~e~~~l~~~~~~v~~~ 44 (96)
|+.|-... .++++++..++..++.-+.+.
T Consensus 95 p~aH~~~~~~~~~~~dale~L~~~S~l~r~ 124 (125)
T PF09509_consen 95 PRAHEPRIEWPDTEQDALEILSLASLLHRR 124 (125)
T ss_pred ccccCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 66775542 357888888888887776654
No 118
>PRK13959 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=25.64 E-value=70 Score=23.75 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=29.4
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEE
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAF 56 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i 56 (96)
...++..+..++++++.++.++..++-+.+.+.+...++.+
T Consensus 185 s~~~~~~l~g~s~~e~~~i~e~al~i~~~l~~~~~~~GiiL 225 (341)
T PRK13959 185 SRKEADEIAGLSRAEIEELEELALKVDEIITEEAEKRGLIH 225 (341)
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 34455556677888888888888888888887765555444
No 119
>PF15149 CATSPERB: Cation channel sperm-associated protein subunit beta protein family
Probab=25.34 E-value=1.6e+02 Score=23.31 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=28.2
Q ss_pred cCCCceEEEEecCCCCCCCcceEEEEEeeCCC-CCCCCCCCcccc
Q 034378 49 HKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA-ASSEENDGNVSW 92 (96)
Q Consensus 49 ~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~-~d~~~~~~~~~~ 92 (96)
+++.+.|+.+ .|.+.+|+-+-++|..+ =+.+..-.||++
T Consensus 445 YNP~gLnlsi-----~GSeLFHFRVsvvpGvtFCnL~~EFqIYVD 484 (540)
T PF15149_consen 445 YNPLGLNLSI-----KGSELFHFRVSVVPGVTFCNLVEEFQIYVD 484 (540)
T ss_pred eCcccceEEE-----EecceeEEEEEeecCceeccchhheEEEec
Confidence 5677888886 58889999999999866 344444446553
No 120
>KOG2712 consensus Transcriptional coactivator [Transcription]
Probab=25.20 E-value=1.5e+02 Score=18.31 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Q 034378 26 LTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 26 l~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
|+.++|..|-+.+..|-++|++.
T Consensus 83 Ls~~qW~~Lk~~~~eId~Al~~l 105 (108)
T KOG2712|consen 83 LSLEQWSKLKEHIEEIDKALRKL 105 (108)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999998888763
No 121
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=25.19 E-value=1.1e+02 Score=18.04 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 24 GDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
..++.+++.+|...++.+.+.+++.
T Consensus 69 f~c~~e~L~~Li~~Lk~A~~~~e~~ 93 (95)
T cd04751 69 FTCTLEQLQDLVNKLKDAAKNIERA 93 (95)
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999998888763
No 122
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=25.06 E-value=1.2e+02 Score=19.36 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=23.3
Q ss_pred ccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 19 DAVRFGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 19 H~~~l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
++-++.+++++|+.++.....+..+.-++
T Consensus 88 ~li~iE~l~~~el~~~~~~~~~~~~~~~~ 116 (132)
T PF04120_consen 88 ELIDIEDLTEEELEEIRKRYERLAEQARE 116 (132)
T ss_pred HhCCcccCCHHHHHHHHHHHHHHHHHhhh
Confidence 45678999999999998888888776554
No 123
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=24.92 E-value=1.5e+02 Score=16.99 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEec
Q 034378 33 DLWLTAQTVGTQLESYHKASSLAFAIQD 60 (96)
Q Consensus 33 ~l~~~~~~v~~~l~~~~~~~~~~i~~~~ 60 (96)
++-++++.+.+.+.+.++.+...+..-+
T Consensus 1 dl~~l~~~i~~~l~~~~~~~~~~l~~~d 28 (129)
T PF13492_consen 1 DLDELLERILELLRELLGADRAALFLLD 28 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-SEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEE
Confidence 3556788889999999999987776544
No 124
>TIGR02391 hypoth_ymh conserved hypothetical protein TIGR02391. This family consists of a relatively rare (~ 8 occurrences per 200 genomes) prokaryotic protein family. Genes for members are appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. The function is unknown.
Probab=24.90 E-value=1.9e+02 Score=18.19 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=20.9
Q ss_pred CCcccCCcC-CCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 16 PRRDAVRFG-DLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 16 Pk~H~~~l~-dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
|+.|-.... +.+..|..+...++.-+.+.|+++
T Consensus 90 p~aH~~~~~~~~~~~dAle~L~~~Sll~r~lD~~ 123 (125)
T TIGR02391 90 PVAHAPRYFIDPNIFDAADALQLASLASRLLDRA 123 (125)
T ss_pred cccccccccCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 666755433 333466777777777777777653
No 125
>cd01415 SAICAR_synt_PurC bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. A subfamily of SAICAR synthetases represented by the Thermotoga maritima (Tm) enzyme and E. coli PurC. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=24.73 E-value=83 Score=21.95 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=29.4
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEE
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAF 56 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i 56 (96)
..++..+.-++++|+.++.+...++.+.+.+.+...++.+
T Consensus 129 ~~~~~~~~~~~~~e~~~i~~~~l~v~~~l~~~~~~~gl~L 168 (230)
T cd01415 129 EDHILALGLATEEELKEIKELALKINEVLSEFFAEIGIIL 168 (230)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 3444445567888999999999999999988876555444
No 126
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=24.43 E-value=1.3e+02 Score=21.63 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 25 DLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 25 dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
+|+++|...|.+.++.+.+.+++.|
T Consensus 290 ~L~~~E~~~L~~s~~~l~~~~~~~~ 314 (315)
T PRK00066 290 PLNDDEKQKFAHSADVLKEIMDEAF 314 (315)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999988887654
No 127
>COG0780 Enzyme related to GTP cyclohydrolase I [General function prediction only]
Probab=23.99 E-value=2.2e+02 Score=18.61 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 36 LTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 36 ~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+.+.++...|++.+.+.-..+..-..+-+| ++|.|..+.+
T Consensus 96 ~c~~~I~~dl~~~l~P~~l~V~~~~~pRGg-------i~i~p~~~s~ 135 (149)
T COG0780 96 QCANRIFNDLKALLKPEYLEVYGKFTPRGG-------IDIDPFRESG 135 (149)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEEeccCC-------eecceeeccC
Confidence 367788888899898887777655555566 8899977544
No 128
>PLN02527 aspartate carbamoyltransferase
Probab=23.97 E-value=1.1e+02 Score=22.03 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=22.6
Q ss_pred ccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 19 DAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 19 H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
|.-++.|++.+|+..+...+..+.+..
T Consensus 2 ~~l~~~d~s~~el~~ll~~A~~~k~~~ 28 (306)
T PLN02527 2 DVIEAQQFDREMLELLFEVAREMEKVE 28 (306)
T ss_pred CcCChhhCCHHHHHHHHHHHHHHHhhh
Confidence 667899999999999999888887643
No 129
>PRK06474 hypothetical protein; Provisional
Probab=23.93 E-value=1.3e+02 Score=19.80 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 24 GDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
.-|+++|+.+|.+.+..+.....+
T Consensus 134 L~Lt~ee~~el~~el~~ll~~y~~ 157 (178)
T PRK06474 134 LKLDEEEFEEFQSELNELMIKYYN 157 (178)
T ss_pred EecCHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999998888764
No 130
>KOG2650 consensus Zinc carboxypeptidase [Function unknown]
Probab=23.89 E-value=1.3e+02 Score=22.97 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=31.2
Q ss_pred cccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEE
Q 034378 9 FGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFA 57 (96)
Q Consensus 9 ~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~ 57 (96)
-|..|+.|--|..+.. +.+.+|.++++..+++|++..| ..|.++
T Consensus 311 YsQ~llyPyg~~~~~~----~~~~dl~~va~~a~~ai~~~~g-t~Y~~G 354 (418)
T KOG2650|consen 311 YSQLLLYPYGYTNDLP----EDYEDLQEVARAAADALKSVYG-TKYTVG 354 (418)
T ss_pred cceeEEecccccCCCC----CCHHHHHHHHHHHHHHHHHHhC-CEEEec
Confidence 4678999999976553 4556677777888888888765 345554
No 131
>COG0152 PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism]
Probab=23.88 E-value=1.8e+02 Score=20.57 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=31.5
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEE
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFA 57 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~ 57 (96)
-+|++.+.-.+++++.++..++.++-..++..+...|+.++
T Consensus 134 d~~i~~~~~~~~ee~~~i~~~alkin~~l~~~~~~~Giilv 174 (247)
T COG0152 134 DEHISALGIATPEEIEEIKELALKINEVLKDLFAKRGIILV 174 (247)
T ss_pred hhhcchhccCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 56766666666889999999999999999988765555443
No 132
>PRK07758 hypothetical protein; Provisional
Probab=23.86 E-value=16 Score=22.11 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=22.5
Q ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 034378 20 AVRFGDLTADETRDLWLTAQTVGTQLESYHKA 51 (96)
Q Consensus 20 ~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~ 51 (96)
+.++..++++|+..+-.+-++.++.+++.+..
T Consensus 58 L~dLv~~te~ELl~iknlGkKSL~EIkekL~E 89 (95)
T PRK07758 58 VEELSKYSEKEILKLHGMGPASLPKLRKALEE 89 (95)
T ss_pred HHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 34566778888888888777777776665543
No 133
>PRK14823 putative deoxyribonucleoside-triphosphatase; Provisional
Probab=23.67 E-value=1.2e+02 Score=20.40 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=23.5
Q ss_pred EEEeCCcccCCcCCCCHHHHHHHHH---HHHHHHHHH
Q 034378 12 FKIDPRRDAVRFGDLTADETRDLWL---TAQTVGTQL 45 (96)
Q Consensus 12 ~lIiPk~H~~~l~dl~~~e~~~l~~---~~~~v~~~l 45 (96)
-+.+|..+-.++.+|+.+|...+.- +++++.+.|
T Consensus 152 pIF~p~~~~kT~aEm~~~eKn~iSHR~~A~~~l~~~l 188 (191)
T PRK14823 152 PIFVPEGYDKTFAELGLEIKNQISHRAKAVQKLIDFL 188 (191)
T ss_pred eeEEeCCCCcchHhCCHHHHhhcCHHHHHHHHHHHHH
Confidence 4677888888999999998765544 444444443
No 134
>PF08925 DUF1907: Domain of Unknown Function (DUF1907); InterPro: IPR015021 The structure of this domain displays an alpha-beta-beta-alpha four layer topology, with an HxHxxxxxxxxxH motif that coordinates a zinc ion, and an acetate anion at a site that likely supports the enzymatic activity of an ester hydrolase []. ; GO: 0005634 nucleus; PDB: 1XCR_B.
Probab=23.49 E-value=79 Score=22.90 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhcCCCceEE----EEecCCCCCCCcceEEEEEeeCCCC-CCCCCCCccccc
Q 034378 37 TAQTVGTQLESYHKASSLAF----AIQDGPQAGQTVPHVHIHIVPRKAA-SSEENDGNVSWD 93 (96)
Q Consensus 37 ~~~~v~~~l~~~~~~~~~~i----~~~~~~~~gq~v~H~HiHiiPr~~~-d~~~~~~~~~~~ 93 (96)
.+.-+.++|++.+|...+.+ ++.+| -+.+||+|-+.. .+...+.+-.|-
T Consensus 166 f~~~iR~~L~~~Yg~~~VglGG~F~i~~G--------kak~HVMpdFs~~Pl~s~~~v~~WL 219 (284)
T PF08925_consen 166 FVTCIRKALEKHYGDKPVGLGGVFLIKNG--------KAKQHVMPDFSKCPLNSDEDVNNWL 219 (284)
T ss_dssp HHHHHHHHHHHHHTTS--EEEEEEEEEES--------EEEEEE--S--SS---SHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCceecceEEEEeCC--------cEEEEecCCCCCCCcCCHHHHHHhh
Confidence 34445577788888765544 34433 578999996543 222334444443
No 135
>PRK00419 DNA primase small subunit; Reviewed
Probab=23.34 E-value=2.9e+02 Score=20.85 Aligned_cols=27 Identities=11% Similarity=-0.076 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEE
Q 034378 32 RDLWLTAQTVGTQLESYHKASSLAFAI 58 (96)
Q Consensus 32 ~~l~~~~~~v~~~l~~~~~~~~~~i~~ 58 (96)
......+.++...|+.-||-+.+.+++
T Consensus 119 ~~~k~~a~klld~L~~DFGf~~i~~vF 145 (376)
T PRK00419 119 ERAKEEALRLLDFLEDDFGFEDIHVVF 145 (376)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEEE
Confidence 344466777888999999988877776
No 136
>KOG3052 consensus Cytochrome c1 [Energy production and conversion]
Probab=23.32 E-value=60 Score=23.38 Aligned_cols=43 Identities=14% Similarity=-0.024 Sum_probs=28.4
Q ss_pred CCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 4 ~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
-+|+.||-.+-++|.=..+..+..+..=....++.+.|..-|+
T Consensus 218 fNPyFpGgaIaMa~~l~de~vEyeDgtPAT~sQ~aKDV~~FL~ 260 (311)
T KOG3052|consen 218 FNPYFPGGAIAMAKVLFDEVVEYEDGTPATMSQMAKDVVTFLH 260 (311)
T ss_pred cCCCCCCcccccchhhcccceeecCCCchhHHHHHHHHHHHHH
Confidence 4799999999999987766655555444444445555554443
No 137
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=23.17 E-value=1.3e+02 Score=19.63 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 034378 24 GDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
..|+.+++.+|.+.++.|+.+..
T Consensus 12 ~~L~~~DR~eL~~~~q~i~~~~~ 34 (152)
T PF07954_consen 12 QKLDHEDRLELAKDLQSIARKSN 34 (152)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999886543
No 138
>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3.1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....
Probab=23.10 E-value=1.2e+02 Score=20.17 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
++.++++|...+..++.++.++++...
T Consensus 146 L~~f~~~E~~~l~~~~~~a~~~l~~~i 172 (184)
T PF01195_consen 146 LSKFSPEERELLDKVIPQAAEALEQII 172 (184)
T ss_dssp TSB-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999988888887654
No 139
>PRK00120 dITP/XTP pyrophosphatase; Reviewed
Probab=22.66 E-value=1.5e+02 Score=20.05 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=25.2
Q ss_pred EEEeCCcccCCcCCCCHHHHHHHH---HHHHHHHHHHHh
Q 034378 12 FKIDPRRDAVRFGDLTADETRDLW---LTAQTVGTQLES 47 (96)
Q Consensus 12 ~lIiPk~H~~~l~dl~~~e~~~l~---~~~~~v~~~l~~ 47 (96)
.+.+|...-.++.+|+.+|...+. .+++++.+.|++
T Consensus 155 pIF~p~g~~kT~AEm~~~eKn~iSHR~~A~~kl~~~l~~ 193 (196)
T PRK00120 155 PIFFPPGYGKTFAELTPEEKNAISHRGKALKLLLEALRE 193 (196)
T ss_pred eEEEECCCCcchhhCCHHHHhhcCHHHHHHHHHHHHHHH
Confidence 467788777889999999866553 455555555544
No 140
>cd04498 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. hPOT1 is implicated in telomere length regulation.
Probab=22.57 E-value=2.1e+02 Score=17.99 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=22.1
Q ss_pred cCCCceEEEEecCCCCCC------CcceEEEEEeeCCCCCCCCCCCcccc
Q 034378 49 HKASSLAFAIQDGPQAGQ------TVPHVHIHIVPRKAASSEENDGNVSW 92 (96)
Q Consensus 49 ~~~~~~~i~~~~~~~~gq------~v~H~HiHiiPr~~~d~~~~~~~~~~ 92 (96)
+.+.+|-.+.|..-..+. ...|+++|+. .++-..|.|+.+|
T Consensus 77 lK~GdfV~L~NVhiK~~~~~~~~~~~~~Le~~l~---~gg~~~~rgi~vl 123 (123)
T cd04498 77 LKPGDFVRIYNVHAKSYSSKNEHDENDHLHFHLV---HGGTEYGRGIRVL 123 (123)
T ss_pred CCCCCEEEEEEEEEEeccCCcccCCcceEEEEEc---cCceeeccceeeC
Confidence 455555555444322222 2568888876 3444456666653
No 141
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=22.51 E-value=1.2e+02 Score=14.99 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 034378 29 DETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 29 ~e~~~l~~~~~~v~~~l~~ 47 (96)
|+..+|++++..+.+.++.
T Consensus 1 e~~~~La~al~~~~~~i~~ 19 (41)
T PF02132_consen 1 EEAEQLADALKEAKENIKF 19 (41)
T ss_dssp HHHHHHHHHHHHHHHH-EE
T ss_pred CcHHHHHHHHHHHHHcCCc
Confidence 4566777777777666654
No 142
>PF11419 DUF3194: Protein of unknown function (DUF3194); InterPro: IPR024502 This family of proteins has no known function however the structure has been determined. The protein consists of two alpha-helices packed on the same side of a central beta-hairpin [].; PDB: 1PU1_A.
Probab=22.31 E-value=1.7e+02 Score=17.43 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=15.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q 034378 23 FGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
+-.|+++++.++.++++..+...
T Consensus 3 l~kLs~~el~eI~e~a~~~~e~~ 25 (87)
T PF11419_consen 3 LPKLSEEELDEISEFAAEAAEGY 25 (87)
T ss_dssp ----SHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999888877543
No 143
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=22.23 E-value=2.6e+02 Score=19.01 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCC--ceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 25 DLTADETRDLWLTAQTVGTQLESYHKAS--SLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 25 dl~~~e~~~l~~~~~~v~~~l~~~~~~~--~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
+|+.++..+|.. ..++. .+... .+.+++|. .+...+|+|+=+-.|.-
T Consensus 78 EL~~eq~~~L~~---~f~~~---~~~~~G~~~d~aIH~---d~~~NpHaHim~t~R~l 126 (216)
T PF03389_consen 78 ELTLEQNIELVR---EFAQE---NFVDYGMAADVAIHD---DGPRNPHAHIMFTTRPL 126 (216)
T ss_dssp TS-HHHHHHHHH---HHHHH---HHTTTT--EEEEEEE---ETTTEEEEEEEE--B--
T ss_pred cCCHHHHHHHHH---HHHHH---HhhccceEEEEEEec---CCCCCCEEEEEeecCcc
Confidence 577777766543 22232 23333 36778885 23356777777766654
No 144
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=22.15 E-value=1e+02 Score=18.69 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=21.5
Q ss_pred cccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 034378 9 FGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKA 51 (96)
Q Consensus 9 ~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~ 51 (96)
.|-..|-+ +|..-+.....+...++..+++.+.+.+.+.||.
T Consensus 54 iG~a~vS~-kHanfivN~g~Ata~dv~~Li~~v~~~V~~~~Gi 95 (105)
T PF02873_consen 54 IGGAQVSE-KHANFIVNHGGATAADVLALIEEVRERVKEKFGI 95 (105)
T ss_dssp ETTEEE-S-SSTTEEEE-SS--HHHHHHHHHHHHHHHHHHHS-
T ss_pred eCcCEech-hhCCeEEECCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 34445444 4644444445555566666666666777776664
No 145
>PF01930 Cas_Cas4: Domain of unknown function DUF83; InterPro: IPR022765 This entry represents an uncharacterised domain found in several proteins, including DNA replication helicase Dna2, clustered regularly interspaced short palindromic repeats (CRISPR)-associated exonuclease Cas4 and putative RecB family exonuclease proteins.
Probab=21.86 E-value=1.9e+02 Score=18.24 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=30.3
Q ss_pred CccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 7 YAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 7 ~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
...|.+..+..+.... .++++++...+.++++++.+.++..
T Consensus 100 v~~G~i~y~~~~~~~~-v~~~~~~~~~v~~~i~~i~~~~~~~ 140 (162)
T PF01930_consen 100 VKRGYIYYIEDRKRVR-VEITEELRRKVEKLIEEIRKILEGE 140 (162)
T ss_pred ceeEEEEEecCCeEEE-EeCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4457666666655444 5689999999999999998888764
No 146
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=21.64 E-value=2e+02 Score=21.63 Aligned_cols=34 Identities=6% Similarity=0.042 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEec
Q 034378 27 TADETRDLWLTAQTVGTQLESYHKASSLAFAIQD 60 (96)
Q Consensus 27 ~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~ 60 (96)
.++.+....++++.+.+.++..|||.+.+.++.+
T Consensus 6 ~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~ 39 (464)
T cd00309 6 GEEARLSNINAAKALADAVKTTLGPKGMDKMLVD 39 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEc
Confidence 3556788899999999999999999987776654
No 147
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=21.62 E-value=1.3e+02 Score=18.61 Aligned_cols=29 Identities=10% Similarity=0.064 Sum_probs=18.9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 21 VRFGDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
..+..|++++...+...++...+.+++.|
T Consensus 94 ~~~~~L~~~~~~~~l~~l~~~~~~~~~~~ 122 (135)
T PRK09706 94 ELFDALPESEQDAQLSEMRARVENFNKLF 122 (135)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556777777777777777666666544
No 148
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=21.62 E-value=2e+02 Score=17.35 Aligned_cols=43 Identities=9% Similarity=-0.081 Sum_probs=26.5
Q ss_pred CCccccEEEeCCcccC----Cc-CCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 6 QYAFGPFKIDPRRDAV----RF-GDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 6 p~~~g~~lIiPk~H~~----~l-~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
|.+.|++.+-++.... ++ ...++.++..+.+.++.+.+.++..
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~ 48 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA 48 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 5566777777633311 12 2346778888888888888888765
No 149
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=21.61 E-value=3e+02 Score=19.36 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHH------HHHHHHHHHHhhcCCCceEEEE
Q 034378 25 DLTADETRDLWL------TAQTVGTQLESYHKASSLAFAI 58 (96)
Q Consensus 25 dl~~~e~~~l~~------~~~~v~~~l~~~~~~~~~~i~~ 58 (96)
.++.||..++.+ +-+++.++|++.|+-.+..+.+
T Consensus 140 ~cs~EER~eF~e~Dkk~~iR~K~v~~Lr~~F~~~gLtFSI 179 (252)
T KOG3189|consen 140 NCSQEERNEFEELDKKHKIREKFVEALREEFADYGLTFSI 179 (252)
T ss_pred ccCHHHHHHHHHhhhhhhhHHHHHHHHHHHhcccCeeEEE
Confidence 356777666655 5567788899888776766664
No 150
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=21.42 E-value=1.2e+02 Score=16.77 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=19.2
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 22 RFGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 22 ~l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
++..+++++...+...++.+..+++-
T Consensus 28 nl~~l~~~~~~Ri~Dfl~G~~~al~G 53 (73)
T PF04472_consen 28 NLENLDDEEAQRILDFLSGAVYALDG 53 (73)
T ss_dssp E-TTS-HHHHHHHHHHHHHHHHHTT-
T ss_pred ECCCCCHHHHHHHHHHHhchheeeCC
Confidence 78889999988888888888777764
No 151
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=21.19 E-value=44 Score=19.53 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=17.0
Q ss_pred CCCCccccEEEeCCcccCCcC
Q 034378 4 IEQYAFGPFKIDPRRDAVRFG 24 (96)
Q Consensus 4 ~~p~~~g~~lIiPk~H~~~l~ 24 (96)
-.++.+|..++++++.+.++.
T Consensus 14 GD~~~~g~~~~v~~~~~~s~d 34 (89)
T smart00537 14 GDRFFKGVRLVVNRKRFKSFE 34 (89)
T ss_pred CCCCCCCEEEEEChhhcCCHH
Confidence 357789999999999888764
No 152
>PF06619 DUF1149: Protein of unknown function (DUF1149); InterPro: IPR009530 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2HNG_A 2O2A_C.
Probab=20.92 E-value=2e+02 Score=18.33 Aligned_cols=42 Identities=14% Similarity=-0.005 Sum_probs=22.0
Q ss_pred eCCcccCCcCCCCHHHHHHHHHHHHHHHHHHH-----hhcCCCceEE
Q 034378 15 DPRRDAVRFGDLTADETRDLWLTAQTVGTQLE-----SYHKASSLAF 56 (96)
Q Consensus 15 iPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~-----~~~~~~~~~i 56 (96)
+-.|-+.+-+|++.+|+..|++=+-.+.++|- -+|+..|+|+
T Consensus 79 i~~r~~~~~sd~~~~e~~~Ls~PL~d~i~rLTYEVTeIalD~PGinL 125 (127)
T PF06619_consen 79 IKDRYVGEPSDLSQEEVELLSRPLLDYIERLTYEVTEIALDEPGINL 125 (127)
T ss_dssp EET---SSGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS----
T ss_pred eeccccCChhhcCHHHHHHHHHHHHHHHHhheeEEEEEEecCCCCCc
Confidence 34456778899999999888775544444443 2355556554
No 153
>TIGR02930 vnfG_nitrog V-containing nitrogenase, delta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfG, represents the delta subunit of the V-containing (vanadium) alternative nitrogenase. It is homologous to AnfG, the delta subunit of the Fe-only nitrogenase.
Probab=20.79 E-value=71 Score=19.78 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=17.1
Q ss_pred cccCCcCCCCHHHHHHHHHHHHH
Q 034378 18 RDAVRFGDLTADETRDLWLTAQT 40 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~ 40 (96)
+...=+.+++.+|+.+|++.++.
T Consensus 67 ~rfpW~~~~~kdei~~l~~~lk~ 89 (109)
T TIGR02930 67 ERFPWISELDKDQILELVESVKK 89 (109)
T ss_pred HhCcHHHhCCHHHHHHHHHHHHH
Confidence 34455778999999988887764
No 154
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=20.58 E-value=1.1e+02 Score=19.23 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=17.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 034378 23 FGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
+-+.|++++.+|++.++.+...
T Consensus 93 IRqIPpee~L~l~~r~~d~~gi 114 (120)
T COG1334 93 IRQIPPEEALELAARMRDVIGI 114 (120)
T ss_pred hhhCChHHHHHHHHHHHHhhhh
Confidence 5688999999998888766543
No 155
>TIGR02929 anfG_nitrog Fe-only nitrogenase, delta subunit. Nitrogenase, also called dinitrogenase, is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfG, represents the delta subunit of the Fe-only alternative nitrogenase. It is homologous to VnfG, the delta subunit of the V-containing (vanadium) nitrogenase.
Probab=20.54 E-value=73 Score=19.73 Aligned_cols=23 Identities=26% Similarity=0.318 Sum_probs=17.2
Q ss_pred cccCCcCCCCHHHHHHHHHHHHH
Q 034378 18 RDAVRFGDLTADETRDLWLTAQT 40 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~ 40 (96)
+...=+.+++.+|+.+|++.++.
T Consensus 67 ~rfpW~~~~~kdei~~l~~~lk~ 89 (109)
T TIGR02929 67 RRFPWLEDMTKDEIKTLMQALHE 89 (109)
T ss_pred HhCcHHHhCCHHHHHHHHHHHHH
Confidence 34455778999999988887764
No 156
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=20.51 E-value=1.9e+02 Score=16.69 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 034378 24 GDLTADETRDLWLTAQTVGTQLESYHKA 51 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~~~~~ 51 (96)
.+++++|...+..-++.+.+.++..-..
T Consensus 17 l~l~~ee~~~~~~~l~~il~~~~~l~~v 44 (95)
T PRK00034 17 LELSEEELEKFAGQLNKILDFVEQLNEV 44 (95)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4689999999999999998888876443
No 157
>PRK13971 hydroxyproline-2-epimerase; Provisional
Probab=20.46 E-value=3e+02 Score=20.29 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=27.9
Q ss_pred EEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 034378 12 FKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHK 50 (96)
Q Consensus 12 ~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~ 50 (96)
+-++..+.. -.++..++..+|.++..++.+++++.+.
T Consensus 173 ya~vda~~~--gl~l~~~~~~~l~~~g~~ik~a~~~~~~ 209 (333)
T PRK13971 173 YAIVEPQEN--FPGLDHYSASDILRWSPVLRQALNEKYE 209 (333)
T ss_pred EEEEEHHHc--CCccChhHHHHHHHHHHHHHHHHHhhcC
Confidence 344555443 2478899999999999999999988743
No 158
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=20.44 E-value=1.3e+02 Score=17.76 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=15.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHH
Q 034378 21 VRFGDLTADETRDLWLTAQTV 41 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~v 41 (96)
++++|.+++|+.+|...+...
T Consensus 5 ~~i~dyTE~EFl~~v~~i~~~ 25 (85)
T PF01320_consen 5 NKISDYTESEFLEFVKEIFNA 25 (85)
T ss_dssp SSGGGSBHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHcC
Confidence 468888999988877665543
No 159
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=20.31 E-value=1.6e+02 Score=17.13 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=26.6
Q ss_pred CccccEEEeCCcccC-CcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 7 YAFGPFKIDPRRDAV-RFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 7 ~~~g~~lIiPk~H~~-~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
..+|-.+++ |.. -++-++++|..+..++++++...+
T Consensus 43 ~~vGDyVLV---HaGfAi~~ideeeA~etl~~l~el~~~~ 79 (82)
T PRK10413 43 DLLGQWVLV---HVGFAMSIIDEDEAKATLDALRQMEYDI 79 (82)
T ss_pred cccCCEEEE---ecchhhhhCCHHHHHHHHHHHHHHHhhh
Confidence 456777776 432 367789999999999998887554
No 160
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=20.28 E-value=1.6e+02 Score=17.53 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=27.1
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCC------cceEEEEEeeCCC
Q 034378 22 RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQT------VPHVHIHIVPRKA 80 (96)
Q Consensus 22 ~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~------v~H~HiHiiPr~~ 80 (96)
++.+++.+.+.+...+.+.+.++++. .|........+.-...|-+ -.|+=+|-.|-..
T Consensus 5 d~~~c~~~~L~d~~~l~~~l~~a~~~-~g~~~~~~~~~~f~p~GvT~~~ll~ESHisiHTwPE~~ 68 (106)
T PF02675_consen 5 DLYGCDPDLLNDAEALEKILRDAAKA-AGLTVLSISFHKFEPQGVTGVALLAESHISIHTWPEHG 68 (106)
T ss_dssp EEES--HHHCTSHHHHHHHHHHHHHH-CT-EEEEEEEEE-SSS-EEEEEEETTEEEEEEEEGGGT
T ss_pred EEECCChHHCCCHHHHHHHHHHHHHH-cCCEEEEEEEEEcCCCcEEEEEEhhccEEEEEeCCCcC
Confidence 45566666555544444444444443 3444444433332222311 2699999999643
No 161
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=20.13 E-value=1.8e+02 Score=18.07 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=26.6
Q ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEec
Q 034378 20 AVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQD 60 (96)
Q Consensus 20 ~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~ 60 (96)
..++.|.++++..++...++++++.++. .++++++-+
T Consensus 28 l~~~~d~~~e~~~~~~~~l~~vAk~~kg----k~i~Fv~vd 64 (130)
T cd02983 28 LPHILDCQASCRNKYLEILKSVAEKFKK----KPWGWLWTE 64 (130)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHHhcC----CcEEEEEEe
Confidence 4455677888899999999999888864 335565443
Done!