Query 034378
Match_columns 96
No_of_seqs 152 out of 1086
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 22:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fit_A FragIle histidine prote 100.0 2.3E-29 8E-34 161.5 8.8 89 3-91 27-115 (147)
2 3ksv_A Uncharacterized protein 100.0 2.8E-28 9.6E-33 157.2 9.8 80 3-82 39-118 (149)
3 3o0m_A HIT family protein; ssg 100.0 4.2E-28 1.4E-32 156.1 8.8 80 3-82 33-113 (149)
4 3imi_A HIT family protein; str 100.0 3.2E-28 1.1E-32 156.4 8.2 80 3-82 37-116 (147)
5 3lb5_A HIT-like protein involv 99.9 5.6E-28 1.9E-32 157.6 9.1 81 3-83 56-136 (161)
6 2eo4_A 150AA long hypothetical 99.9 2.7E-27 9.3E-32 152.1 8.9 81 3-83 27-107 (149)
7 3l7x_A SMU.412C, putative HIT- 99.9 2.4E-27 8.2E-32 156.2 8.6 80 3-82 64-143 (173)
8 1y23_A HIT, histidine triad pr 99.9 3.8E-27 1.3E-31 150.6 6.7 80 3-82 33-112 (145)
9 3n1s_A HIT-like protein HINT; 99.9 1.6E-26 5.3E-31 144.0 6.8 80 3-82 31-111 (119)
10 4egu_A Histidine triad (HIT) p 99.9 2.1E-26 7.1E-31 143.1 5.9 84 3-86 32-117 (119)
11 3o1c_A Histidine triad nucleot 99.9 4.3E-26 1.5E-30 143.1 6.0 81 3-83 43-123 (126)
12 3p0t_A Uncharacterized protein 99.9 1.8E-25 6.1E-30 142.0 8.3 75 3-82 33-107 (138)
13 3ano_A AP-4-A phosphorylase; d 99.9 1.8E-25 6E-30 151.9 8.5 81 3-83 98-179 (218)
14 3oj7_A Putative histidine tria 99.9 2.3E-25 8E-30 138.0 8.1 80 3-83 35-114 (117)
15 3i24_A HIT family hydrolase; s 99.9 6.2E-25 2.1E-29 141.7 9.8 82 4-90 28-109 (149)
16 3ohe_A Histidine triad (HIT) p 99.9 6E-25 2E-29 140.0 9.5 78 4-86 28-105 (137)
17 3r6f_A HIT family protein; str 99.9 1.7E-25 5.7E-30 141.9 6.3 74 3-82 32-105 (135)
18 2oik_A Histidine triad (HIT) p 99.9 3.3E-24 1.1E-28 138.4 10.1 76 3-83 34-109 (154)
19 1ems_A Nitfhit, NIT-fragIle hi 99.9 1.1E-24 3.8E-29 159.3 8.3 84 3-86 323-406 (440)
20 1xqu_A HIT family hydrolase; p 99.9 1E-24 3.5E-29 140.4 6.9 78 3-81 63-142 (147)
21 3i4s_A Histidine triad protein 99.9 1.3E-23 4.6E-28 135.4 9.4 78 5-87 33-111 (149)
22 3nrd_A Histidine triad (HIT) p 99.9 7.8E-23 2.7E-27 129.9 9.7 81 4-90 30-111 (135)
23 1z84_A Galactose-1-phosphate u 99.9 1.9E-22 6.5E-27 144.9 6.8 88 3-90 239-332 (351)
24 1gup_A Galactose-1-phosphate u 99.8 1.1E-20 3.9E-25 135.5 10.8 80 3-82 224-309 (348)
25 3sp4_A Aprataxin-like protein; 99.2 3.2E-12 1.1E-16 85.7 0.6 73 3-79 35-126 (204)
26 1z84_A Galactose-1-phosphate u 98.6 1.5E-07 5E-12 67.5 7.5 67 11-77 125-191 (351)
27 3bl9_A Scavenger mRNA-decappin 98.5 9.7E-07 3.3E-11 62.2 8.7 70 5-78 175-247 (301)
28 1vlr_A MRNA decapping enzyme; 98.5 5.6E-07 1.9E-11 64.4 7.4 71 4-78 221-294 (350)
29 1gup_A Galactose-1-phosphate u 96.6 0.0069 2.4E-07 43.1 6.7 65 11-77 107-171 (348)
30 2pof_A CDP-diacylglycerol pyro 95.4 0.015 5E-07 39.4 3.7 69 6-76 46-120 (227)
31 3vg8_G Hypothetical protein TT 86.1 1.3 4.3E-05 26.6 4.1 26 51-77 76-101 (116)
32 3sds_A Ornithine carbamoyltran 68.9 5.7 0.00019 28.4 3.9 41 6-46 12-52 (353)
33 2ns6_A Mobilization protein A; 65.0 16 0.00054 23.6 5.2 49 24-81 80-130 (185)
34 4h31_A Otcase, ornithine carba 58.5 12 0.00043 26.5 4.1 31 17-47 31-61 (358)
35 3p0t_A Uncharacterized protein 57.9 20 0.00068 21.4 4.5 34 9-42 95-134 (138)
36 4ekn_B Aspartate carbamoyltran 56.6 15 0.00051 25.6 4.1 29 18-46 2-30 (306)
37 4hbl_A Transcriptional regulat 56.3 19 0.00064 21.3 4.2 27 23-49 121-147 (149)
38 1dxh_A Ornithine carbamoyltran 56.0 19 0.00065 25.4 4.7 31 16-46 5-35 (335)
39 3deu_A Transcriptional regulat 55.7 13 0.00044 22.7 3.4 26 23-48 137-162 (166)
40 2fbh_A Transcriptional regulat 55.2 17 0.00059 21.0 3.9 25 23-47 121-145 (146)
41 1ml4_A Aspartate transcarbamoy 55.0 15 0.0005 25.7 3.9 29 16-44 4-32 (308)
42 4f2g_A Otcase 1, ornithine car 54.9 16 0.00053 25.6 4.0 31 17-47 6-36 (309)
43 1pvv_A Otcase, ornithine carba 54.3 17 0.0006 25.4 4.2 30 17-46 7-36 (315)
44 3nrv_A Putative transcriptiona 54.3 19 0.00066 21.0 4.0 25 23-47 123-147 (148)
45 4aik_A Transcriptional regulat 54.0 19 0.00063 21.7 3.9 26 23-48 115-140 (151)
46 2ef0_A Ornithine carbamoyltran 53.4 18 0.00061 25.1 4.1 29 16-44 8-36 (301)
47 3s2w_A Transcriptional regulat 53.1 17 0.00057 21.7 3.6 25 23-47 133-157 (159)
48 4a8t_A Putrescine carbamoyltra 52.9 18 0.00061 25.6 4.1 31 17-47 24-54 (339)
49 1lj9_A Transcriptional regulat 52.8 22 0.00074 20.6 4.0 27 23-49 112-138 (144)
50 3gd5_A Otcase, ornithine carba 52.6 16 0.00054 25.7 3.8 30 15-44 11-40 (323)
51 1vlv_A Otcase, ornithine carba 52.5 19 0.00066 25.3 4.2 31 15-45 17-47 (325)
52 1oth_A Protein (ornithine tran 52.4 19 0.00064 25.3 4.1 31 16-46 5-35 (321)
53 3kp7_A Transcriptional regulat 52.3 21 0.00073 21.0 4.0 26 23-48 122-147 (151)
54 3bpv_A Transcriptional regulat 52.1 22 0.00074 20.4 3.9 25 23-47 112-136 (138)
55 2nyx_A Probable transcriptiona 52.1 6.6 0.00023 24.0 1.6 26 23-48 128-153 (168)
56 4a8p_A Putrescine carbamoyltra 51.2 20 0.00067 25.6 4.1 31 17-47 2-32 (355)
57 4amu_A Ornithine carbamoyltran 50.6 20 0.00069 25.6 4.1 32 16-47 29-60 (365)
58 1duv_G Octase-1, ornithine tra 50.0 21 0.00073 25.1 4.1 31 16-46 4-34 (333)
59 2gxg_A 146AA long hypothetical 49.4 26 0.0009 20.2 4.0 25 23-47 119-143 (146)
60 2w37_A Ornithine carbamoyltran 49.1 23 0.00078 25.3 4.2 31 16-46 27-57 (359)
61 2eth_A Transcriptional regulat 48.8 17 0.0006 21.5 3.2 25 23-47 127-151 (154)
62 1lgh_B LH II, B800/850, light 48.5 25 0.00086 17.6 4.0 23 21-43 3-25 (45)
63 2qww_A Transcriptional regulat 48.4 18 0.0006 21.4 3.1 25 23-47 128-152 (154)
64 1vr7_A Adometdc, samdc, S-aden 48.3 36 0.0012 21.0 4.6 60 20-80 21-86 (142)
65 2i6u_A Otcase, ornithine carba 48.3 18 0.00063 25.1 3.5 27 18-44 3-29 (307)
66 3boq_A Transcriptional regulat 47.8 16 0.00056 21.6 2.9 25 23-47 131-155 (160)
67 3kzn_A Aotcase, N-acetylornith 47.7 18 0.00063 25.6 3.5 27 17-43 23-49 (359)
68 3q98_A Transcarbamylase; rossm 47.6 22 0.00076 25.7 4.0 31 17-47 24-54 (399)
69 2a61_A Transcriptional regulat 46.2 14 0.00048 21.5 2.4 27 24-50 117-143 (145)
70 3csu_A Protein (aspartate carb 45.9 21 0.00072 24.9 3.5 27 17-43 6-32 (310)
71 3tpf_A Otcase, ornithine carba 45.7 21 0.00072 24.9 3.5 27 18-44 3-29 (307)
72 3grf_A Ornithine carbamoyltran 44.5 23 0.00077 24.9 3.5 30 17-46 7-36 (328)
73 3d6n_B Aspartate carbamoyltran 44.4 18 0.00063 25.0 3.0 26 18-43 2-27 (291)
74 4ep1_A Otcase, ornithine carba 43.9 26 0.00089 24.8 3.8 29 16-44 34-62 (340)
75 2it9_A Hypothetical protein; s 43.7 23 0.00078 21.7 3.0 52 24-76 32-91 (127)
76 2bf9_A Pancreatic hormone; tur 43.6 27 0.00093 16.6 4.2 23 24-46 10-32 (36)
77 1pg5_A Aspartate carbamoyltran 43.5 23 0.00078 24.6 3.4 26 18-43 2-27 (299)
78 3eco_A MEPR; mutlidrug efflux 43.2 17 0.00058 21.0 2.4 22 24-45 117-138 (139)
79 1zq6_A Otcase, ornithine carba 43.1 25 0.00086 25.1 3.6 29 16-44 22-50 (359)
80 3r7f_A Aspartate carbamoyltran 43.0 19 0.00066 25.0 3.0 26 18-43 2-27 (304)
81 3oop_A LIN2960 protein; protei 42.8 19 0.00064 21.0 2.6 23 23-45 120-142 (143)
82 2yfk_A Aspartate/ornithine car 42.1 32 0.0011 25.1 4.1 30 17-46 21-50 (418)
83 2rdp_A Putative transcriptiona 41.9 24 0.00082 20.6 3.0 24 23-46 125-148 (150)
84 4b8x_A SCO5413, possible MARR- 41.8 24 0.00081 21.0 3.0 25 22-46 118-142 (147)
85 3bdd_A Regulatory protein MARR 41.8 31 0.0011 19.7 3.5 25 23-47 115-139 (142)
86 2zet_C Melanophilin; complex, 41.5 23 0.0008 22.1 2.9 22 20-41 11-32 (153)
87 3bj6_A Transcriptional regulat 41.4 34 0.0012 19.9 3.7 25 23-47 123-147 (152)
88 3g3z_A NMB1585, transcriptiona 41.2 14 0.00049 21.6 1.9 26 24-49 115-140 (145)
89 3cjn_A Transcriptional regulat 40.9 28 0.00096 20.7 3.2 25 23-47 135-159 (162)
90 1bba_A Bovine pancreatic polyp 40.7 31 0.0011 16.4 3.3 23 24-46 10-32 (36)
91 2nvn_A Hypothetical protein; s 40.7 24 0.00083 21.4 2.8 52 24-76 34-93 (122)
92 1pcf_A P15, transcriptional co 40.2 35 0.0012 18.3 3.2 22 26-47 44-65 (66)
93 3e6m_A MARR family transcripti 39.9 20 0.00069 21.4 2.5 24 23-46 136-159 (161)
94 3tgn_A ADC operon repressor AD 39.7 22 0.00074 20.7 2.5 23 23-45 123-145 (146)
95 1s3j_A YUSO protein; structura 39.6 31 0.0011 20.2 3.3 26 23-48 120-145 (155)
96 3bja_A Transcriptional regulat 38.7 29 0.00098 19.8 2.9 22 24-45 117-138 (139)
97 2asw_A Hypothetical protein AF 38.1 32 0.0011 15.8 2.7 23 27-49 33-55 (56)
98 3k0l_A Repressor protein; heli 37.8 25 0.00084 21.1 2.6 26 23-48 129-154 (162)
99 2fa5_A Transcriptional regulat 37.5 34 0.0012 20.2 3.2 27 23-49 132-158 (162)
100 1s28_A ORF1; type III chaperon 35.2 68 0.0023 19.6 4.2 28 23-50 103-130 (132)
101 3ueb_A Putative uncharacterize 35.1 44 0.0015 19.4 3.2 20 23-42 15-34 (110)
102 2f5g_A Transposase, putative; 35.0 68 0.0023 18.6 4.6 36 6-44 11-46 (133)
103 3jw4_A Transcriptional regulat 33.0 30 0.001 20.2 2.4 21 23-43 126-146 (148)
104 1gxg_A Colicin E8 immunity pro 31.3 53 0.0018 18.5 3.1 20 21-40 5-24 (85)
105 2fbk_A Transcriptional regulat 31.1 24 0.00081 21.7 1.7 23 24-46 156-178 (181)
106 2pex_A Transcriptional regulat 30.5 47 0.0016 19.4 3.0 23 24-46 129-151 (153)
107 1m55_A REP protein; endonuclea 30.2 1.2E+02 0.004 19.9 5.2 39 32-73 54-92 (197)
108 1f8p_A Neuropeptide Y (PNPY); 29.1 53 0.0018 15.6 3.2 24 24-47 10-33 (37)
109 1pu1_A Hypothetical protein MT 28.1 91 0.0031 18.0 3.9 22 23-44 6-27 (94)
110 3pka_A Methionine aminopeptida 28.0 95 0.0032 20.8 4.5 44 1-46 1-62 (285)
111 3hsr_A HTH-type transcriptiona 27.6 44 0.0015 19.3 2.5 20 25-44 119-138 (140)
112 4glq_A Methyl-accepting chemot 27.6 76 0.0026 19.3 3.7 30 32-61 10-39 (171)
113 3ech_A MEXR, multidrug resista 26.4 61 0.0021 18.6 3.0 21 23-43 120-140 (142)
114 1omh_A TRWC protein; protein-D 26.2 1.6E+02 0.0055 20.2 6.8 20 28-47 104-123 (293)
115 1z91_A Organic hydroperoxide r 26.1 41 0.0014 19.4 2.1 23 25-47 123-145 (147)
116 3io0_A ETUB protein; tamdem re 25.5 1E+02 0.0035 20.7 4.1 40 30-80 92-131 (230)
117 2ibo_A Hypothetical protein SP 25.1 98 0.0033 17.9 3.6 27 29-57 47-73 (104)
118 2vjv_A Transposase ORFA; DNA-b 24.2 1.1E+02 0.0037 18.6 3.9 34 8-44 21-54 (159)
119 1zbd_B Rabphilin-3A; G protein 24.0 32 0.0011 20.9 1.4 20 21-40 5-24 (134)
120 3bro_A Transcriptional regulat 24.0 89 0.003 17.7 3.4 20 23-42 119-138 (141)
121 3nqo_A MARR-family transcripti 23.8 37 0.0013 21.0 1.7 27 23-49 126-152 (189)
122 3p04_A Uncharacterized BCR; SE 23.6 45 0.0015 18.9 1.8 28 22-49 34-61 (87)
123 1sd4_A Penicillinase repressor 23.2 75 0.0026 17.9 2.9 18 24-41 106-123 (126)
124 4fm4_A NitrIle hydratase alpha 23.2 53 0.0018 21.7 2.3 24 10-34 158-181 (209)
125 3awu_A Tyrosinase; tyrosinase, 22.9 75 0.0026 21.6 3.2 23 21-43 5-27 (281)
126 1unk_A Colicin E7; immunity pr 22.9 84 0.0029 17.8 2.9 21 21-41 5-25 (87)
127 3hht_A NitrIle hydratase alpha 22.7 54 0.0018 21.8 2.3 24 10-34 173-196 (216)
128 3u43_A Colicin-E2 immunity pro 22.7 67 0.0023 18.5 2.5 20 21-40 5-24 (94)
129 2bv6_A MGRA, HTH-type transcri 22.6 43 0.0015 19.3 1.7 21 25-45 120-140 (142)
130 3v2i_A PTH, peptidyl-tRNA hydr 22.6 1.5E+02 0.005 19.7 4.4 28 23-50 180-207 (222)
131 2pth_A Peptidyl-tRNA hydrolase 22.6 1.2E+02 0.0042 19.5 4.0 27 23-49 150-176 (193)
132 2plg_A TLL0839 protein; hypoth 22.2 1.5E+02 0.0053 18.6 4.5 42 8-52 111-156 (163)
133 2hsb_A Hypothetical UPF0332 pr 22.2 1.2E+02 0.0041 17.3 4.7 29 23-51 96-124 (126)
134 1fr2_A Colicin E9 immunity pro 22.1 59 0.002 18.4 2.1 19 21-39 5-23 (86)
135 1ryb_A CRS2; alpha-beta, hydro 21.9 1.2E+02 0.0043 19.8 4.0 27 23-49 164-190 (205)
136 2p5i_A BH3822 protein; PFAM030 21.7 1.2E+02 0.0041 20.4 4.0 28 24-51 253-280 (288)
137 3nea_A PTH, peptidyl-tRNA hydr 21.6 1.3E+02 0.0043 19.8 3.9 28 23-50 170-197 (207)
138 2epi_A UPF0045 protein MJ1052; 21.6 1.1E+02 0.0039 17.4 3.4 27 29-57 51-77 (100)
139 1u9l_A Transcription elongatio 21.6 1E+02 0.0035 16.4 3.0 30 15-44 36-65 (70)
140 2jvf_A De novo protein M7; tet 21.6 1.1E+02 0.0039 16.8 4.5 33 23-59 54-86 (96)
141 1u9d_A Hypothetical protein VC 21.2 1.4E+02 0.0049 17.8 6.1 54 23-79 21-78 (122)
142 3nua_A Phosphoribosylaminoimid 21.0 95 0.0033 20.8 3.3 42 15-56 136-177 (238)
143 1xcr_A Hypothetical protein PT 20.9 59 0.002 22.9 2.3 37 37-81 185-226 (316)
144 3pqe_A L-LDH, L-lactate dehydr 20.6 1E+02 0.0035 21.3 3.5 24 25-48 290-313 (326)
145 4hoy_A PTH, peptidyl-tRNA hydr 20.5 1.3E+02 0.0045 19.4 3.8 28 23-50 150-177 (193)
146 2akf_A Coronin-1A; coiled coil 20.5 75 0.0026 14.3 3.5 20 28-47 5-24 (32)
147 4fyj_A PTH, peptidyl-tRNA hydr 20.4 1.1E+02 0.0039 19.8 3.5 27 23-49 158-184 (199)
148 2l95_A Crammer, LP06209P; cyst 20.3 53 0.0018 17.7 1.7 14 20-34 58-71 (80)
No 1
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=99.96 E-value=2.3e-29 Score=161.49 Aligned_cols=89 Identities=44% Similarity=0.655 Sum_probs=78.0
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|.+|||+||+||+|+.++.||+++++.+|+.+++++++++++.+++++||+++|+|+.+||+|+|+|+||+||+.+|
T Consensus 27 d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~HlH~HiiPr~~~d 106 (147)
T 1fit_A 27 NRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGD 106 (147)
T ss_dssp CSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCCSSSCCEEEEEECTTC
T ss_pred CCCCCCCcEEEEEEccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCccCCCccEEEEEEECCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccc
Q 034378 83 SEENDGNVS 91 (96)
Q Consensus 83 ~~~~~~~~~ 91 (96)
++.++++|.
T Consensus 107 ~~~~~~v~~ 115 (147)
T 1fit_A 107 FHRNDSIYE 115 (147)
T ss_dssp ---------
T ss_pred CCCcchHHH
Confidence 998888764
No 2
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=99.95 E-value=2.8e-28 Score=157.24 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=77.4
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|.+|||+||+||+|+.++.||+++++.+|+.+++++++++++.+++++||+++|+|+.+||+|+|+|+||+||+.+|
T Consensus 39 d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~v~HlHiHiiPR~~~d 118 (149)
T 3ksv_A 39 DINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEK 118 (149)
T ss_dssp CSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSTTTTCCSSSCCEEEEEECCTT
T ss_pred CCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecCcccCCCCCEEEEEEEecccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999975
No 3
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=99.95 E-value=4.2e-28 Score=156.13 Aligned_cols=80 Identities=26% Similarity=0.400 Sum_probs=77.0
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCceEEEEecCCCCCCCcceEEEEEeeCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESY-HKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAA 81 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~-~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~ 81 (96)
+..|.+|||+|||||+|+.++.||+++++.+|+.+++++++++++. +++++||+++|+|+.+||+|+|+|+||+||+.+
T Consensus 33 d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ni~~n~g~~aGq~v~HlHiHiiPR~~~ 112 (149)
T 3o0m_A 33 DIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNG 112 (149)
T ss_dssp CSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCSEEEEECCCSGGGTCCSSSCCEEEEEECTT
T ss_pred cCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCCCccceEEEEEECCccC
Confidence 5689999999999999999999999999999999999999999998 999999999999999999999999999999986
Q ss_pred C
Q 034378 82 S 82 (96)
Q Consensus 82 d 82 (96)
|
T Consensus 113 d 113 (149)
T 3o0m_A 113 D 113 (149)
T ss_dssp C
T ss_pred C
Confidence 5
No 4
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=99.95 E-value=3.2e-28 Score=156.37 Aligned_cols=80 Identities=21% Similarity=0.364 Sum_probs=77.3
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|.+|||+||+||+|+.++.||+++++.+|+.+++++++++++.+++++||+++|+|+.+||+|+|+|+||+||+.+|
T Consensus 37 d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~aGq~v~HlHiHiiPR~~~~ 116 (147)
T 3imi_A 37 DISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGEN 116 (147)
T ss_dssp CTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHCCSEEEEEEEESGGGTCCSSSCCEEEEEECSTT
T ss_pred cCCCCCCcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCcccCCCcCEEEEEEeCCccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999865
No 5
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=99.95 E-value=5.6e-28 Score=157.59 Aligned_cols=81 Identities=20% Similarity=0.269 Sum_probs=78.2
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|.+|||+|||||+|+.++.||+++++.+|+.+++++++++++.+++++||+++|+|+.+||+|+|+|+||+||+.+|
T Consensus 56 d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~V~HlHiHiiPR~~~d 135 (161)
T 3lb5_A 56 DIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEGI 135 (161)
T ss_dssp CSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEESGGGTCCSCSCCEEEEEECTTC
T ss_pred CCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCCCCEEEEEEEcccCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred C
Q 034378 83 S 83 (96)
Q Consensus 83 ~ 83 (96)
.
T Consensus 136 ~ 136 (161)
T 3lb5_A 136 E 136 (161)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=99.94 E-value=2.7e-27 Score=152.13 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=77.9
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|.+|||+||+||+|+.++.||+++++.+|+.+++++.+++++.+++++||+++|+|+.+||+++|+|+||+||+.+|
T Consensus 27 d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHiHviPr~~~d 106 (149)
T 2eo4_A 27 DKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGD 106 (149)
T ss_dssp CSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGGTCCSCSCCEEEEEECSSC
T ss_pred CCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCCCCCcCEEEEEEECCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 034378 83 S 83 (96)
Q Consensus 83 ~ 83 (96)
.
T Consensus 107 ~ 107 (149)
T 2eo4_A 107 Y 107 (149)
T ss_dssp C
T ss_pred C
Confidence 3
No 7
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=99.94 E-value=2.4e-27 Score=156.22 Aligned_cols=80 Identities=29% Similarity=0.389 Sum_probs=76.6
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|.+|||+|||||+|+.++.||+++++.+|+.+++++++++++.+++++||+++|+|+.+||+|+|+|+||+||+.+|
T Consensus 64 d~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~V~HlHiHiIPR~~~d 143 (173)
T 3l7x_A 64 DISQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFADS 143 (173)
T ss_dssp CTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHTHHHHHHHHHHHHTCSEEEEEECCSGGGTCCSCSCCEEEEEECC-C
T ss_pred cCCCCCCcEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCCcCEEEEEEEecccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999854
No 8
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=99.94 E-value=3.8e-27 Score=150.57 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=77.1
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|.+|||+||+||+|+.++.||+++++.+|+.+++++.+++++.+++++||+++|+|+.+||+++|+|+||+||+.+|
T Consensus 33 ~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~g~~v~HlH~HiiPr~~~~ 112 (145)
T 1y23_A 33 DISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKG 112 (145)
T ss_dssp CTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEEEEEEEESGGGTCCSSSCCEEEEEECSTT
T ss_pred CCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcCCCCCcCEEEEEEEccccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999875
No 9
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=99.93 E-value=1.6e-26 Score=143.98 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=68.7
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceEEEEecCCCCCCCcceEEEEEeeCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLES-YHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAA 81 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~-~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~ 81 (96)
+.+|.+|||+||+||+|+.++.||+++|..+++.+++.+.+.+++ .+++++||+++|+|+.+||+|+|+|+||+||++.
T Consensus 31 d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~g~ni~~n~g~~agq~V~HlH~Hiipr~~~ 110 (119)
T 3n1s_A 31 DISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110 (119)
T ss_dssp CSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTTCEEEEEEEHHHHTCCSSSCCEEEEESSCC
T ss_pred CCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCCcCCCcCEEEEEEeCCccc
Confidence 468999999999999999999999999777666666555555554 4788999999999999999999999999999885
Q ss_pred C
Q 034378 82 S 82 (96)
Q Consensus 82 d 82 (96)
+
T Consensus 111 ~ 111 (119)
T 3n1s_A 111 G 111 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=99.93 E-value=2.1e-26 Score=143.07 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=69.6
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCceEEEEecCCCCCCCcceEEEEEeeCCC-
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESY-HKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA- 80 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~-~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~- 80 (96)
+.+|.+|||+||+||+|+.++.||+++|+.+++.+++.+.+.+++. +++++||+++|+|+.+||+++|+|+||+||+.
T Consensus 32 d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ni~~n~g~~agq~v~HlH~Hiip~~~~ 111 (119)
T 4egu_A 32 DLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKL 111 (119)
T ss_dssp CSSCSSSEEEEEEESSCCSSGGGSCGGGTHHHHHHHHHHHHHHHHHTHHHHCEEEEEEETTTTTCCSCSCCEEEEESSCC
T ss_pred CCCCCCCceEEEEechhhCCHhHCCHhHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCCCCCcCEEEEEEeCCccc
Confidence 5789999999999999999999999998777777776444444432 34679999999999999999999999999887
Q ss_pred CCCCCC
Q 034378 81 ASSEEN 86 (96)
Q Consensus 81 ~d~~~~ 86 (96)
++++.|
T Consensus 112 ~~~~~~ 117 (119)
T 4egu_A 112 PNYEAG 117 (119)
T ss_dssp CCGGGT
T ss_pred CccCcC
Confidence 555544
No 11
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=99.92 E-value=4.3e-26 Score=143.14 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|.+|||+||+||+|+.++.||+++|..+++.+++.+.+.+++...+++||+++|+|+.+||+|+|+|+||+||+..+
T Consensus 43 d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~~g~ni~~n~g~~agq~v~HlH~Hiipr~~~~ 122 (126)
T 3o1c_A 43 DISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMN 122 (126)
T ss_dssp CSSCSSSEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEECCCHHHHTCCSSSCCEEEEESSCCC
T ss_pred CCCCCCCceEEEEechHhchHhhCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCccCCccCEeEEEEeCCcccC
Confidence 56899999999999999999999999987777776654444444444467999999999999999999999999998865
Q ss_pred C
Q 034378 83 S 83 (96)
Q Consensus 83 ~ 83 (96)
+
T Consensus 123 ~ 123 (126)
T 3o1c_A 123 W 123 (126)
T ss_dssp S
T ss_pred C
Confidence 4
No 12
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=99.92 E-value=1.8e-25 Score=142.03 Aligned_cols=75 Identities=24% Similarity=0.430 Sum_probs=71.1
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+.+|.+|||+||+||+|+.++.||+++++.+|+.+++++.+++++.++++++|+.. +||+|+|+|+||+||+++|
T Consensus 33 d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~-----~gq~v~HlH~HiiPr~~~d 107 (138)
T 3p0t_A 33 TIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGLII-----AGLEVPHLHVHVFPTRSLS 107 (138)
T ss_dssp CSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEE-----CCSSCSSCCEEEEEESCGG
T ss_pred cCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEE-----CCcccCEEEEEEeccccCC
Confidence 57899999999999999999999999999999999999999999999999999974 8999999999999999974
No 13
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=99.92 E-value=1.8e-25 Score=151.91 Aligned_cols=81 Identities=23% Similarity=0.412 Sum_probs=77.9
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCc-ceEEEEEeeCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV-PHVHIHIVPRKAA 81 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v-~H~HiHiiPr~~~ 81 (96)
+..|.+|||+|||||+|+.++.||+++++.+|+.+++++.+++++.+++++||+++|+|+.+||+| +|+|+||+||+.+
T Consensus 98 d~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L~~l~~~v~~~l~~~~~~~g~ni~~n~G~~aGq~V~~HlHiHIIPR~~g 177 (218)
T 3ano_A 98 NLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHVVPRWGG 177 (218)
T ss_dssp CSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHCCCSEEEEEEEESGGGTCTTTTSCCEEEEEECTT
T ss_pred ccCCCCCcEEEEEechhhCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCcccCEEEEEEEcccCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999 9999999999997
Q ss_pred CC
Q 034378 82 SS 83 (96)
Q Consensus 82 d~ 83 (96)
|.
T Consensus 178 d~ 179 (218)
T 3ano_A 178 DA 179 (218)
T ss_dssp GG
T ss_pred CC
Confidence 63
No 14
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=99.92 E-value=2.3e-25 Score=138.03 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=70.1
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+.+|.+|||+||+||+|+.++.||+++|..+++.+++.+.+.+++.++ ++||+++|+|+.+||+|+|+|+||+||++.+
T Consensus 35 d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~-~g~ni~~n~g~~agq~v~H~H~Hiipr~~~~ 113 (117)
T 3oj7_A 35 DINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECP-EGYRVVNNIGEDAGQTVKHIHFHILGGKKLA 113 (117)
T ss_dssp CSSCSSSEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCT-TCEEEECCCSTTTTCCSSSCCEEEEESSCCC
T ss_pred CCCCCCCceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCCCCCCeeeeEEEEEEeCCCCCC
Confidence 578999999999999999999999999888888888766666665554 5999999999999999999999999998865
Q ss_pred C
Q 034378 83 S 83 (96)
Q Consensus 83 ~ 83 (96)
+
T Consensus 114 ~ 114 (117)
T 3oj7_A 114 W 114 (117)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=99.92 E-value=6.2e-25 Score=141.69 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=75.3
Q ss_pred CCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCCC
Q 034378 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASS 83 (96)
Q Consensus 4 ~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d~ 83 (96)
.+|.+|||+||+||+|+.++.||++++..+++..++++++++++.++++++|++. +||+|+|+|+|||||+.+|.
T Consensus 28 ~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~-----aGq~V~HlH~HvIPR~~~D~ 102 (149)
T 3i24_A 28 KEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGA-----LGNLVPQLHIHHIARFTTDV 102 (149)
T ss_dssp CBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE-----CCSSCCSCCEEEEEECTTST
T ss_pred CCCCCCEEEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhh-----hhCCCCEEEEEEeCCccCCC
Confidence 5799999999999999999999999999999999999999999999999999984 89999999999999999887
Q ss_pred CCCCCcc
Q 034378 84 EENDGNV 90 (96)
Q Consensus 84 ~~~~~~~ 90 (96)
..+..++
T Consensus 103 ~~~~~vw 109 (149)
T 3i24_A 103 AWPGPVW 109 (149)
T ss_dssp TTTSCST
T ss_pred CCCccee
Confidence 5554443
No 16
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=99.92 E-value=6e-25 Score=139.98 Aligned_cols=78 Identities=12% Similarity=0.158 Sum_probs=73.3
Q ss_pred CCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCCC
Q 034378 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASS 83 (96)
Q Consensus 4 ~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d~ 83 (96)
.+|.+|||++|+||+|+.++.||++++..+++..++++.+++++.++++++|++ .+||+|+|+|+||+||+.+|.
T Consensus 28 ~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-----~aGq~V~HlH~HviPR~~~D~ 102 (137)
T 3ohe_A 28 NDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-----ALGNMVPQLHLHHIVRYQGDP 102 (137)
T ss_dssp SCTTSCEEEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-----ECCSSCCSCCEEEEEECTTST
T ss_pred CCCCCCEEEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-----eccCcCCEEEEEEeCCCCCCC
Confidence 579999999999999999999999999999999999999999999999999998 489999999999999999886
Q ss_pred CCC
Q 034378 84 EEN 86 (96)
Q Consensus 84 ~~~ 86 (96)
..+
T Consensus 103 ~~p 105 (137)
T 3ohe_A 103 AWP 105 (137)
T ss_dssp TTT
T ss_pred CCC
Confidence 544
No 17
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=99.92 E-value=1.7e-25 Score=141.93 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|.+|||+||+||+|+.++.||+++++.+|+.+++++.+++ ++++||+++|+|+ ||+|+|+|+||+||+.+|
T Consensus 32 d~~p~~pgh~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~~----~~~~~ni~~n~g~--gq~v~HlH~HiiPR~~~d 105 (135)
T 3r6f_A 32 DRYPLSKGHFLVIPKAHHPYLHNYKPEELSGVLDTIRHLVQKF----GFERYNILQNNGN--HQEVFHVHFHVIPFVSAD 105 (135)
T ss_dssp CSSCSSTTCEEEEESSCCSSGGGSCGGGGTTHHHHHHHHHHHH----TCCSEEEECCSSS--SCSSSSCCEEEEECCBTT
T ss_pred CCCCCCCCeEEEEEhhHhCCHhHCCHHHHHHHHHHHHHHHHHh----CCCCeEEEEEcCC--CCCccEEEEEEeccccCC
Confidence 5789999999999999999999999999999999999887764 6789999999998 999999999999999865
No 18
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.91 E-value=3.3e-24 Score=138.39 Aligned_cols=76 Identities=24% Similarity=0.327 Sum_probs=71.7
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|.+|||+||+||+|+.++.||+++++.+|+.+++++.+++++.+++++||++. +||+++|+|+||+||+.+|
T Consensus 34 d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g~ni~~-----~gq~v~HlHiHiiPr~~~d 108 (154)
T 2oik_A 34 VENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINLAS-----LGNMTPHVHWHVIPRFKRD 108 (154)
T ss_dssp CCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE-----CCSSSCSCEEEEEEECTTS
T ss_pred cCCCCCCeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEhHH-----hCCCCCEEEEEEeCCCCCC
Confidence 46899999999999999999999999999999999999999999999999999983 7899999999999999876
Q ss_pred C
Q 034378 83 S 83 (96)
Q Consensus 83 ~ 83 (96)
.
T Consensus 109 ~ 109 (154)
T 2oik_A 109 R 109 (154)
T ss_dssp S
T ss_pred C
Confidence 4
No 19
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.91 E-value=1.1e-24 Score=159.30 Aligned_cols=84 Identities=43% Similarity=0.683 Sum_probs=78.6
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|.+|||+||+||+|+.++.||+++|+.+|+.+++++.+++++.+++++||+++|+|+.+||+|+|+|+||+||+.+|
T Consensus 323 ~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~gq~v~HlH~Hiipr~~~d 402 (440)
T 1ems_A 323 NLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGD 402 (440)
T ss_dssp CSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGGTCCSSSCCEEEEEECSSC
T ss_pred cCCcCCCCeEEEEEccccCChhHCCHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCCCccEEEEEEeCCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 034378 83 SEEN 86 (96)
Q Consensus 83 ~~~~ 86 (96)
...+
T Consensus 403 ~~~~ 406 (440)
T 1ems_A 403 FGDN 406 (440)
T ss_dssp C---
T ss_pred CCcc
Confidence 7655
No 20
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=99.91 E-value=1e-24 Score=140.38 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=66.6
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC--CCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHK--ASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~--~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
+..|.+|||+||+||+|+.++.||+++|..+++.+++.+ +++.+.++ +++||+++|+|+.+||+++|+|+||+||++
T Consensus 63 d~~P~~pgH~LViPkrHv~~l~dL~~~e~~~l~~l~~~~-~~v~~~~~~~~~gyni~~n~g~~aGq~v~HlHlHiiP~~~ 141 (147)
T 1xqu_A 63 DINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAA-NKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVD 141 (147)
T ss_dssp CSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHH-HHHHHHTTCTTTCEEEECCCSTTTTCCSCSCCEEEEESSC
T ss_pred ecCCCCccEEEEEeCcccCChhHCCHHHHHHHHHHHHHH-HHHHHHhCCCCCCEEEEEecCcccCCCccEEEEEEeCCCc
Confidence 578999999999999999999999999887787777744 44444444 569999999999999999999999999976
Q ss_pred C
Q 034378 81 A 81 (96)
Q Consensus 81 ~ 81 (96)
.
T Consensus 142 ~ 142 (147)
T 1xqu_A 142 M 142 (147)
T ss_dssp C
T ss_pred C
Confidence 3
No 21
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=99.90 E-value=1.3e-23 Score=135.45 Aligned_cols=78 Identities=27% Similarity=0.411 Sum_probs=71.0
Q ss_pred CCCccccEEEeCCc-ccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCCC
Q 034378 5 EQYAFGPFKIDPRR-DAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASS 83 (96)
Q Consensus 5 ~p~~~g~~lIiPk~-H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d~ 83 (96)
+|.+++|+|||||+ |+.++.||+++++.+++.+++++++++++.++++++|+. .+||+|+|+|+|||||+.+|.
T Consensus 33 ~~~~~~H~LVIPk~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~-----~aGq~V~HlH~HvIPR~~~D~ 107 (149)
T 3i4s_A 33 KDANYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA-----ALGNLVPQLHVHIIARRTGDA 107 (149)
T ss_dssp SCTTSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-----ECCSSCCSCCEEEEEECTTST
T ss_pred CCCCCCEEEEEecccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-----ecCCcCCEEEEEEECCcCCCC
Confidence 45567899999999 899999999999999999999999999999999999997 489999999999999999887
Q ss_pred CCCC
Q 034378 84 EEND 87 (96)
Q Consensus 84 ~~~~ 87 (96)
..+.
T Consensus 108 ~~p~ 111 (149)
T 3i4s_A 108 AWPR 111 (149)
T ss_dssp TTTS
T ss_pred CCCc
Confidence 5433
No 22
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=99.89 E-value=7.8e-23 Score=129.87 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=72.0
Q ss_pred CCCCccccEEEeCC-cccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 4 IEQYAFGPFKIDPR-RDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 4 ~~p~~~g~~lIiPk-~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
.+|..|| ++|||| +|+.++.||++++..+++..++++.+++++.++++++|++ .+||+|+|+|+|||||+.+|
T Consensus 30 ~~~~~p~-~lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-----~aGq~V~HlH~HviPR~~~D 103 (135)
T 3nrd_A 30 NDRRWPW-LILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-----ALGNIVRQLHVHVIARREGD 103 (135)
T ss_dssp SCTTSCE-EEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-----ECCSSCCSCCEEEEEECTTS
T ss_pred CCCCCCE-EEEEcCccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-----eccCCCCEEEEEEecCCCCC
Confidence 4688886 577787 7999999999999999999999999999999999999998 48999999999999999998
Q ss_pred CCCCCCcc
Q 034378 83 SEENDGNV 90 (96)
Q Consensus 83 ~~~~~~~~ 90 (96)
...+..+|
T Consensus 104 ~~~~~~~~ 111 (135)
T 3nrd_A 104 PNWPGPVW 111 (135)
T ss_dssp TTTTSCST
T ss_pred CCCCCccc
Confidence 76655544
No 23
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=99.87 E-value=1.9e-22 Score=144.89 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=79.1
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCC----CCcceEEEEEeeC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAG----QTVPHVHIHIVPR 78 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~g----q~v~H~HiHiiPr 78 (96)
+..|..|||+||+||+|+.++.||+++++.+|+.+++++++++++.+++++||+++|+++.+| |.++|+|+||+||
T Consensus 239 ~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~~~~~yn~~~n~gp~~g~~~~q~v~HlHiHiiPR 318 (351)
T 1z84_A 239 PFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQ 318 (351)
T ss_dssp CTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECCCTTCCGGGGGGCCCEEEEEEC
T ss_pred ccCCCCCeEEEEEeccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCccceEEEEEEcc
Confidence 467899999999999999999999999999999999999999999999999999999999876 7999999999999
Q ss_pred CC--CCCCCCCCcc
Q 034378 79 KA--ASSEENDGNV 90 (96)
Q Consensus 79 ~~--~d~~~~~~~~ 90 (96)
++ .+++.+++.+
T Consensus 319 ~~~~~Gfe~~~~~~ 332 (351)
T 1z84_A 319 LSGVGGFEIGTGCY 332 (351)
T ss_dssp CCCCCHHHHHHSCC
T ss_pred CCCcCccccccCcc
Confidence 87 3555444444
No 24
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=99.84 E-value=1.1e-20 Score=135.46 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=74.8
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCC--CCCcceEEEEEee--
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQA--GQTVPHVHIHIVP-- 77 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~-~~~i~~~~~~~~--gq~v~H~HiHiiP-- 77 (96)
+..|..|||+||+||+|+.++.||+++++.+|+.+++++++++++.++++ +||+++|.++.. ||+++|+|+||+|
T Consensus 224 ~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~~~~~~~Yn~g~~~~p~~g~~q~v~HlHiHiiPpl 303 (348)
T 1gup_A 224 PYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (348)
T ss_dssp CTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECCCSSSSCCTTCCCEEEEECCB
T ss_pred ccCCCCceEEEEEeCcccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCCCCCcccEEEEEEecch
Confidence 46899999999999999999999999999999999999999999999997 999999999875 4899999999999
Q ss_pred -CCCCC
Q 034378 78 -RKAAS 82 (96)
Q Consensus 78 -r~~~d 82 (96)
|+.++
T Consensus 304 ~R~~~~ 309 (348)
T 1gup_A 304 LRSATV 309 (348)
T ss_dssp CSSSSC
T ss_pred hccCCc
Confidence 88764
No 25
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=99.17 E-value=3.2e-12 Score=85.75 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=46.4
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHH------HHHHHHHHHH-HHHH-HHHh------hc-CC----CceEEEEecCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTAD------ETRDLWLTAQ-TVGT-QLES------YH-KA----SSLAFAIQDGPQ 63 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~------e~~~l~~~~~-~v~~-~l~~------~~-~~----~~~~i~~~~~~~ 63 (96)
.++|.++||+|||||+|+.++.++.+. .+..+..+++ ++.+ .... .+ +. ..++++++
T Consensus 35 D~~P~a~~H~LVIPk~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~GfH---- 110 (204)
T 3sp4_A 35 DMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFH---- 110 (204)
T ss_dssp CSSCSSSSEEEEEECCTTTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCTTCCHHHHHTTEEEEEE----
T ss_pred CCCCCCCccEEEEeccccCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcCCeeeeEeccCC----
Confidence 478999999999999999998876542 1233333333 2111 1110 01 11 14667765
Q ss_pred CCCCcceEEEEEeeCC
Q 034378 64 AGQTVPHVHIHIVPRK 79 (96)
Q Consensus 64 ~gq~v~H~HiHiiPr~ 79 (96)
+++++.|+|+|||-+-
T Consensus 111 a~PSm~HLHLHVIS~D 126 (204)
T 3sp4_A 111 AGPSMNNLHLHIMTLD 126 (204)
T ss_dssp SSCSSSSCCEEEEESC
T ss_pred CCCcccceeEEEeccC
Confidence 5679999999999753
No 26
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=98.59 E-value=1.5e-07 Score=67.52 Aligned_cols=67 Identities=13% Similarity=0.264 Sum_probs=62.2
Q ss_pred cEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 11 ~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
+++|.+.+|..++.+|+.+++.++..+.++-.+.|++.-+...+++..|.|+.+|.+++|.|.||+.
T Consensus 125 ~Vii~sp~H~~~l~~ls~~e~~~vi~~~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~HpH~QI~a 191 (351)
T 1z84_A 125 DVVIESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA 191 (351)
T ss_dssp EEEECCSSSSCCGGGSCHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEE
T ss_pred EEEEeCCCCCCCcHHCCHHHHHHHHHHHHHHHHHHhcccCCCEEEEEEEcCcccCCCCcCccceeEe
Confidence 7899999999999999999999999999999999888667778899999999999999999999985
No 27
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=98.47 E-value=9.7e-07 Score=62.16 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=59.1
Q ss_pred CCCccccEEEeCCcc-cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC--CCceEEEEecCCCCCCCcceEEEEEeeC
Q 034378 5 EQYAFGPFKIDPRRD-AVRFGDLTADETRDLWLTAQTVGTQLESYHK--ASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (96)
Q Consensus 5 ~p~~~g~~lIiPk~H-~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~--~~~~~i~~~~~~~~gq~v~H~HiHiiPr 78 (96)
+|...-|+++||++| +.++.||..+.+.-|-.+.+...+.+.+.+| .+.+.+++|-.| +++|+|+||+-.
T Consensus 175 ~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~i~~~y~~~~~~~rlgfHy~P----S~yHLHlHvis~ 247 (301)
T 3bl9_A 175 QQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLP----SYYHLHVHFTAL 247 (301)
T ss_dssp SCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEESSC----SSSSCEEEEEET
T ss_pred CcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEEEecCCC----CcceEEEEEEec
Confidence 588899999999988 9999999999987777777777777777665 557999999877 579999999964
No 28
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=98.46 E-value=5.6e-07 Score=64.37 Aligned_cols=71 Identities=15% Similarity=0.057 Sum_probs=59.6
Q ss_pred CCCCccccEEEeCCcc-cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC--CCceEEEEecCCCCCCCcceEEEEEeeC
Q 034378 4 IEQYAFGPFKIDPRRD-AVRFGDLTADETRDLWLTAQTVGTQLESYHK--ASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (96)
Q Consensus 4 ~~p~~~g~~lIiPk~H-~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~--~~~~~i~~~~~~~~gq~v~H~HiHiiPr 78 (96)
.+|...-|+|+||++| +.++.||..+.+.-|-.+.+...+.+.+.+| .+.+.+++|-.| +++|+|+||+-.
T Consensus 221 ~~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~~~~ii~~~yg~~~~~lRlgfHy~P----S~yHLHlHvis~ 294 (350)
T 1vlr_A 221 QQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYLHYLP----SYYHLHVHFTAL 294 (350)
T ss_dssp SSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEESSC----SSSSCEEEEEET
T ss_pred CCccccceEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEEEecCCC----CcceEEEEEEec
Confidence 3588899999999988 9999999999987777777777777777665 557999999877 579999999964
No 29
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=96.58 E-value=0.0069 Score=43.11 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=52.9
Q ss_pred cEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 11 ~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
.++|-..+|-.++.+|+.+++.++..+.+.-.+.|.. +..-+.+.-|-|+.+|.+..|-|.+|+.
T Consensus 107 ~VIi~sp~H~~~l~~l~~~~~~~vi~~~~~r~~~l~~--~~~yV~iF~N~G~~~G~Sl~HpH~Qi~a 171 (348)
T 1gup_A 107 RVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGK--TYPWVQVFENKGAAMGCSNPHPGGQIWA 171 (348)
T ss_dssp EEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHH--HCSEEEEEEEESGGGTCSCCSSEEEEEE
T ss_pred EEEEcCCcccCChhhCCHHHHHHHHHHHHHHHHHHhh--cCCEEEEecccCCcCCcCCCCCceeEEe
Confidence 5566677999999999999999999988888877773 2233456678899999999999999984
No 30
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=95.43 E-value=0.015 Score=39.42 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=52.6
Q ss_pred CCccccEEEeCCcccCCcCC---C---CHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 6 QYAFGPFKIDPRRDAVRFGD---L---TADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 6 p~~~g~~lIiPk~H~~~l~d---l---~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
+.-|.|.|+||..-++-+.+ + ++..+.+-+..-..|.+++.+-+..+.+.+.+|.. .|.+-.|+||||-
T Consensus 46 ~~Gp~qyLLmPt~rItGIEsP~Ll~~~~pnYf~~AW~aR~~v~~~~g~pipd~~lsLaINS~--~gRSQnQLHIHIs 120 (227)
T 2pof_A 46 LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSR--TGRTQNHFHIHIS 120 (227)
T ss_dssp SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEEEEEBCG--GGCSCCSCCEEEE
T ss_pred CCCCceEEEeccccccCccChhhcCCCCCcHHHHHHHHhHHHHHhhCCCCCccceEEEecCC--CCccccceeeehh
Confidence 45678999999888766643 1 23457777777778888888888777889999864 5777889999975
No 31
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B), unknown function; 2.20A {Thermus thermophilus}
Probab=86.15 E-value=1.3 Score=26.61 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=21.0
Q ss_pred CCceEEEEecCCCCCCCcceEEEEEee
Q 034378 51 ASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 51 ~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
.+.+++..| +...|-+++|+|+|+.=
T Consensus 76 vDHVdi~~~-~gHpGve~PHyhI~l~~ 101 (116)
T 3vg8_G 76 IDHVNMIPS-GPHPGVSEPHYHIELVL 101 (116)
T ss_dssp CCEEEEEEC-CCCTTCCSCEEEEEEES
T ss_pred cceEEEecC-CCCCCcccCceEEEEEE
Confidence 567899886 44579999999999873
No 32
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=68.89 E-value=5.7 Score=28.35 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=27.0
Q ss_pred CCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 6 QYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 6 p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
|+.-+-.-....||.-++.||+.+|+..|.+.+..+.+..+
T Consensus 12 ~~~~~~~~~~~~rhlLsi~dls~~ei~~ll~~A~~lK~~~~ 52 (353)
T 3sds_A 12 PYTNGSHAPSTPRHLLSIADLTPTEFATLVRNASSYKKTIK 52 (353)
T ss_dssp ----------CCCCBSCGGGSCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCCCcccccCCCcCchhhCCHHHHHHHHHHHHHHHHHhh
Confidence 44444445556799999999999999999999888876544
No 33
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=65.01 E-value=16 Score=23.55 Aligned_cols=49 Identities=29% Similarity=0.399 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCCCc--eEEEEecCCCCCCCcceEEEEEeeCCCC
Q 034378 24 GDLTADETRDLWLTAQTVGTQLESYHKASS--LAFAIQDGPQAGQTVPHVHIHIVPRKAA 81 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~--~~i~~~~~~~~gq~v~H~HiHiiPr~~~ 81 (96)
.+|+.++..+|... .++ +.|...+ +.+++|.. +...+|+|+=+--|.-+
T Consensus 80 ~EL~~eq~~~L~~~---f~~---~~~~~~G~~~d~AIH~~---~~~NpHaHim~t~R~~d 130 (185)
T 2ns6_A 80 VELTLDQQKALASE---FAQ---HLTGAERLPYTLAIHAG---GGENPHCHLMISERIND 130 (185)
T ss_dssp TTSCHHHHHHHHHH---HHH---HHHTTTTCCEEEEEEEE---TTTEEEEEEEECCBCCC
T ss_pred ccCCHHHHHHHHHH---HHH---HHHHhcCCEEEEEEEcC---CCCCceEEEEEeecccc
Confidence 45788887776432 222 2333333 67888862 34567777666666543
No 34
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=58.49 E-value=12 Score=26.54 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=26.6
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
.||.-++.||+.+|+..|.+.+.++.+..++
T Consensus 31 grhlLsi~dls~eei~~ll~~A~~lK~~~~~ 61 (358)
T 4h31_A 31 NRNFLKLLDFSTKEIQFLIDLSADLKKAKYA 61 (358)
T ss_dssp TCCBCCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCchhhCCHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999888765543
No 35
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=57.89 E-value=20 Score=21.38 Aligned_cols=34 Identities=9% Similarity=0.076 Sum_probs=20.7
Q ss_pred cccEEEeCCcccCCc------CCCCHHHHHHHHHHHHHHH
Q 034378 9 FGPFKIDPRRDAVRF------GDLTADETRDLWLTAQTVG 42 (96)
Q Consensus 9 ~g~~lIiPk~H~~~l------~dl~~~e~~~l~~~~~~v~ 42 (96)
=-|+.|+||..-.++ ...+++++.++++.++...
T Consensus 95 HlH~HiiPr~~~d~~~~~~~~~~~~~~~l~~~~~~l~~~l 134 (138)
T 3p0t_A 95 HLHVHVFPTRSLSDFGFANVDRNPSPESLDEAQAKIKAAL 134 (138)
T ss_dssp SCCEEEEEESCGGGSSSTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEeccccCCCCcccCCCCCCCHHHHHHHHHHHHHHH
Confidence 347899999875332 2445666666665555443
No 36
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=56.60 E-value=15 Score=25.61 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=25.0
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
||.-++.||+.+|+..+.+.+..+.+..+
T Consensus 2 rhll~~~dls~~ei~~ll~~A~~lk~~~~ 30 (306)
T 4ekn_B 2 KHLISMKDIGKEEILEILDEARKMEELLN 30 (306)
T ss_dssp CCBCCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCchhhCCHHHHHHHHHHHHHHHhHhh
Confidence 78889999999999999998888876543
No 37
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=56.29 E-value=19 Score=21.30 Aligned_cols=27 Identities=7% Similarity=0.038 Sum_probs=23.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
+..++++|...+..+++++.+.+++..
T Consensus 121 ~~~l~~~e~~~l~~~l~~l~~~l~~~~ 147 (149)
T 4hbl_A 121 PQEFDTTEYDETKYVFEELEQTLKHLI 147 (149)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999999888654
No 38
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=55.95 E-value=19 Score=25.41 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=26.7
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
..||.-++.|++.+|+..|.+.+..+.+..+
T Consensus 5 ~~rh~Ls~~dls~~ei~~ll~~A~~lk~~~~ 35 (335)
T 1dxh_A 5 HNRNLLSLMHHSTRELRYLLDLSRDLKRAKY 35 (335)
T ss_dssp TTCCBSSSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHhCCHHHHHHHHHHHHHHHhhhh
Confidence 3589999999999999999999998876543
No 39
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=55.71 E-value=13 Score=22.68 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=22.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
+..++++|...+..+++++.+.+++.
T Consensus 137 ~~~l~~~e~~~l~~~L~~l~~~l~~~ 162 (166)
T 3deu_A 137 LAGISSEEIELLIKLIAKLEHNIMEL 162 (166)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999888764
No 40
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=55.20 E-value=17 Score=21.02 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=19.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
+..++++|...+..+++++.+.+++
T Consensus 121 ~~~l~~~e~~~l~~~l~~l~~~l~~ 145 (146)
T 2fbh_A 121 LTGIDESEQALCQQVLLRILANLEN 145 (146)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4578888888888888888777653
No 41
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=55.04 E-value=15 Score=25.66 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=25.5
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
+.||.-++.||+.+|+..|.+.+..+.+.
T Consensus 4 ~~rh~l~~~dls~~ei~~ll~~A~~lk~~ 32 (308)
T 1ml4_A 4 KGRDVISIRDFSKEDIETVLATAERLERE 32 (308)
T ss_dssp TTCCBCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcchhhCCHHHHHHHHHHHHHHHhh
Confidence 35899999999999999999999988764
No 42
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=54.91 E-value=16 Score=25.55 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=26.5
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
.||.-++.||+.+|+..+.+.+.++.+..++
T Consensus 6 ~rhlls~~dls~~ei~~ll~~A~~lk~~~~~ 36 (309)
T 4f2g_A 6 IRHYLQFKDFSLEDYEYVLERTGILKRKFKN 36 (309)
T ss_dssp CCCBSSGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCchhhCCHHHHHHHHHHHHHHHhhhhc
Confidence 4899999999999999999998888776543
No 43
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=54.34 E-value=17 Score=25.35 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=26.2
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
.||.-++.||+.+|+..|.+.+..+.+..+
T Consensus 7 ~rhlls~~dls~~ei~~ll~~A~~lk~~~~ 36 (315)
T 1pvv_A 7 GRDLLCLQDYTAEEIWTILETAKMFKIWQK 36 (315)
T ss_dssp TCCBSCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhCCHHHHHHHHHHHHHHHhhhh
Confidence 589999999999999999999998876543
No 44
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=54.30 E-value=19 Score=21.02 Aligned_cols=25 Identities=8% Similarity=0.359 Sum_probs=20.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
+..++++|...+..+++++.+.+++
T Consensus 123 ~~~l~~~e~~~l~~~l~~l~~~l~~ 147 (148)
T 3nrv_A 123 LEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 4678899999999999998888764
No 45
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=54.03 E-value=19 Score=21.73 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
+..++++|...+..+++++.+.+.+.
T Consensus 115 ~~~l~~ee~~~l~~~L~kl~~nl~~l 140 (151)
T 4aik_A 115 LGGISSDEIAVLSGLIDKLEKNIIQL 140 (151)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999998888763
No 46
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=53.41 E-value=18 Score=25.14 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=25.7
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
..||+-++.|++.+|+..+.+.+..+.+.
T Consensus 8 ~~rhlls~~dls~~ei~~ll~~A~~lk~~ 36 (301)
T 2ef0_A 8 LPKDLLDFSGYGPKELQALLDLAEQLKRE 36 (301)
T ss_dssp CCSCBSSSTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcchhhCCHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999988764
No 47
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=53.08 E-value=17 Score=21.72 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=20.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
+..++++|...+..+++++.+.+++
T Consensus 133 ~~~l~~~e~~~l~~~l~~l~~~l~~ 157 (159)
T 3s2w_A 133 FSSFDDRQRREITNSLEIMFENGLK 157 (159)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999988888765
No 48
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=52.91 E-value=18 Score=25.61 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=26.5
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
.||.-++.||+.+|+..|.+.+..+.+..++
T Consensus 24 ~rhlls~~dls~~ei~~ll~~A~~lk~~~~~ 54 (339)
T 4a8t_A 24 KRDYVTTETYTKEEMHYLVDLSLKIKEAIKN 54 (339)
T ss_dssp CCCBSCGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccchHhCCHHHHHHHHHHHHHHHhhhhc
Confidence 5899999999999999999998888776543
No 49
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=52.76 E-value=22 Score=20.63 Aligned_cols=27 Identities=11% Similarity=-0.010 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
+..++++|...+..+++++.+.+++..
T Consensus 112 ~~~l~~~e~~~l~~~l~~l~~~l~~~~ 138 (144)
T 1lj9_A 112 LQGLSEVEISQLADYLVRMRKNVSEDW 138 (144)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHhHHHHH
Confidence 457889999999999998888877643
No 50
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=52.60 E-value=16 Score=25.73 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=25.3
Q ss_pred eCCcccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 15 DPRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 15 iPk~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
...||.-++.||+.+|+..+.+.+.++.+.
T Consensus 11 ~~~rhllsi~dls~~ei~~ll~~A~~lk~~ 40 (323)
T 3gd5_A 11 RFRPDLLSLDDLDEAQLHALLTLAHQLKRG 40 (323)
T ss_dssp CCCSCBSSGGGSCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCccchHhCCHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999988877653
No 51
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=52.54 E-value=19 Score=25.28 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=26.9
Q ss_pred eCCcccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 034378 15 DPRRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 15 iPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
...||.-++.||+.+|+..|.+.+..+.+..
T Consensus 17 ~~~rh~ls~~dls~~ei~~ll~~A~~lk~~~ 47 (325)
T 1vlv_A 17 LKGRSLLTLLDFSPEEIRYLLDISKQVKMEN 47 (325)
T ss_dssp CTTCCBSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccchhhCCHHHHHHHHHHHHHHHhhh
Confidence 4568999999999999999999999887654
No 52
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=52.36 E-value=19 Score=25.29 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=26.6
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
..||+-++.||+.+|+..|.+.+..+.+..+
T Consensus 5 ~~rhlls~~dls~~ei~~ll~~A~~lk~~~~ 35 (321)
T 1oth_A 5 KGRDLLTLKNFTGEEIKYMLWLSADLKFRIK 35 (321)
T ss_dssp TTCCBSCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchhhCCHHHHHHHHHHHHHHHhhhh
Confidence 3589999999999999999999998876543
No 53
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=52.28 E-value=21 Score=20.99 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=22.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
+..++++|...+..+++++.+.+++.
T Consensus 122 ~~~l~~~e~~~l~~~l~~l~~~l~~~ 147 (151)
T 3kp7_A 122 TSDFDSKEIEKVRQVLEIIDYRIQSY 147 (151)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998888764
No 54
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=52.14 E-value=22 Score=20.40 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
+..++++|...+...++++.+.+++
T Consensus 112 ~~~l~~~e~~~l~~~l~~~~~~l~~ 136 (138)
T 3bpv_A 112 FRDFTEDERKLFRKMCRRLAEEAVR 136 (138)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999988887764
No 55
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=52.09 E-value=6.6 Score=23.99 Aligned_cols=26 Identities=8% Similarity=-0.029 Sum_probs=20.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
+..++++|...|..+++++.+.++..
T Consensus 128 ~~~l~~ee~~~l~~~L~~l~~~l~~~ 153 (168)
T 2nyx_A 128 VEQMAPAERHGLVRALTAFTEAGGEP 153 (168)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45788889999988888888777653
No 56
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=51.22 E-value=20 Score=25.60 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=26.2
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
.||.-++.||+.+|+..|.+.+..+.+..++
T Consensus 2 ~rhlLsi~dls~eei~~ll~~A~~lk~~~~~ 32 (355)
T 4a8p_A 2 KRDYVTTETYTKEEMHYLVDLSLKIKEAIKN 32 (355)
T ss_dssp CCCBSCGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccCchhhCCHHHHHHHHHHHHHHHhhhhc
Confidence 4788899999999999999998888766543
No 57
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=50.59 E-value=20 Score=25.64 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=27.0
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
..||.-++.||+.+|+..|.+.+..+.+..++
T Consensus 29 ~~rh~Lsl~Dls~~ei~~ll~~A~~lK~~~~~ 60 (365)
T 4amu_A 29 KGRSLDSLLNFTTEEVQHLIDLSIDLKKAKYQ 60 (365)
T ss_dssp TTCCBSCGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCchhhCCHHHHHHHHHHHHHHHhhhhc
Confidence 46899999999999999999998888765543
No 58
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=49.96 E-value=21 Score=25.15 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=26.5
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
..||+-++.||+.+|+..|.+.+..+.+..+
T Consensus 4 ~~rh~Ls~~dls~~ei~~ll~~A~~lk~~~~ 34 (333)
T 1duv_G 4 YHKHFLKLLDFTPAELNSLLQLAAKLKADKK 34 (333)
T ss_dssp TTCCBSCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchhhCCHHHHHHHHHHHHHHHhhhh
Confidence 3589999999999999999999998876543
No 59
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=49.43 E-value=26 Score=20.23 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=19.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
+..++++|...+..+++++.+.+++
T Consensus 119 ~~~l~~~e~~~l~~~l~~~~~~l~~ 143 (146)
T 2gxg_A 119 TGDLSEDEVILVLDKISKILKRIEE 143 (146)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888877764
No 60
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=49.14 E-value=23 Score=25.31 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=26.6
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
..||+-++.||+.+|+..|.+.+..+.+..+
T Consensus 27 ~~rh~Ls~~Dls~~ei~~Ll~~A~~lK~~~~ 57 (359)
T 2w37_A 27 QGRSVLAEKDFSAAELEYLIDFGLHLKALKK 57 (359)
T ss_dssp TTCCBCCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccchhhCCHHHHHHHHHHHHHHHhhhh
Confidence 3589999999999999999999998876543
No 61
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=48.83 E-value=17 Score=21.51 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=19.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
+..++++|...+..+++++.+.+++
T Consensus 127 ~~~l~~ee~~~l~~~L~~l~~~l~~ 151 (154)
T 2eth_A 127 LEKFSEEDFKVVSEGFNRMVEALSR 151 (154)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888877764
No 62
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=48.50 E-value=25 Score=17.56 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=17.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHH
Q 034378 21 VRFGDLTADETRDLWLTAQTVGT 43 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~v~~ 43 (96)
.+++.|+++|..|+......-..
T Consensus 3 ~s~tGLT~~EA~EfH~~~~~~~~ 25 (45)
T 1lgh_B 3 RSLSGLTEEEAIAVHDQFKTTFS 25 (45)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHHHHH
Confidence 46889999999999886655443
No 63
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=48.37 E-value=18 Score=21.36 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=20.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
+..++++|...+..+++++.+.+++
T Consensus 128 ~~~l~~~e~~~l~~~l~~l~~~l~~ 152 (154)
T 2qww_A 128 FENLTENEIEELIRLNKKVETLLKK 152 (154)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999887764
No 64
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=48.35 E-value=36 Score=21.01 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=34.5
Q ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCc------ceEEEEEeeCCC
Q 034378 20 AVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV------PHVHIHIVPRKA 80 (96)
Q Consensus 20 ~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v------~H~HiHiiPr~~ 80 (96)
+.++.+++.+-+.+...+-+.+.++.+. .|..-+++.++.-...|-+. .|+=+|-.|-+.
T Consensus 21 i~DlygC~~~~L~D~e~l~~~l~eAa~~-~gatvl~~~~h~F~P~GvSgvvllaESHIsIHTwPE~g 86 (142)
T 1vr7_A 21 VAEFYECDREVLDNVQLIEQEMKQAAYE-SGATIVTSTFHRFLPYGVSGVVVISESHLTIHTWPEYG 86 (142)
T ss_dssp EEEEESCCHHHHTCHHHHHHHHHHHHHH-HTCCEEEEEEEECSSSCEEEEEEETTEEEEEEEEGGGT
T ss_pred EEEEcCCChHHCCCHHHHHHHHHHHHHH-cCCEEeEEEEEEcCCCCeEEEEEecccEEEEEeCCCCC
Confidence 3468888877665555544444444433 35665666555432223221 699999999653
No 65
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=48.26 E-value=18 Score=25.14 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.2
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
||.-++.||+.+|+..|.+.+..+.+.
T Consensus 3 rhlls~~dls~~ei~~ll~~A~~lk~~ 29 (307)
T 2i6u_A 3 RHFLRDDDLSPAEQAEVLELAAELKKD 29 (307)
T ss_dssp CCBSSGGGSCHHHHHHHHHHHHHHHHS
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhh
Confidence 788999999999999999999888754
No 66
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=47.81 E-value=16 Score=21.64 Aligned_cols=25 Identities=0% Similarity=0.086 Sum_probs=18.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
+..++++|...+..+++++.+.+++
T Consensus 131 ~~~l~~~e~~~l~~~l~~l~~~l~~ 155 (160)
T 3boq_A 131 LRAVSDQDMVEASAALRGILESMQT 155 (160)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 4578888888888888888877654
No 67
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=47.69 E-value=18 Score=25.59 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=23.3
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGT 43 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~ 43 (96)
-||.-++.||+.+|+..+.+.+.++.+
T Consensus 23 mkhlLsi~Dls~~ei~~ll~~A~~~k~ 49 (359)
T 3kzn_A 23 LKHFLNTQDWSRAELDALLTQAALFKR 49 (359)
T ss_dssp CCCBSCGGGSCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhCCHHHHHHHHHHHHHHHh
Confidence 489999999999999999988877643
No 68
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=47.60 E-value=22 Score=25.71 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=26.2
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
.||.-++.||+.+|+..|.+.+..+.+..++
T Consensus 24 ~rh~L~l~Dls~eei~~ll~~A~~lK~~~~~ 54 (399)
T 3q98_A 24 EKDFLLTWEQTPDELKQVLDVAAALKALRAE 54 (399)
T ss_dssp GSCCCCGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCchhhCCHHHHHHHHHHHHHHHHHhhc
Confidence 5899999999999999999998888765543
No 69
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=46.18 E-value=14 Score=21.46 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 034378 24 GDLTADETRDLWLTAQTVGTQLESYHK 50 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~~~~ 50 (96)
..++++|...+...++++.+.+++.+.
T Consensus 117 ~~l~~~e~~~l~~~l~~l~~~l~~~~~ 143 (145)
T 2a61_A 117 SDLGKEKSSKILDYLKELKGVMERNFS 143 (145)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357788888888888888888776553
No 70
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=45.87 E-value=21 Score=24.89 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=24.2
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGT 43 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~ 43 (96)
.||.-++.||+.+|+..|.+.+..+.+
T Consensus 6 ~rh~ls~~dls~~ei~~ll~~A~~lk~ 32 (310)
T 3csu_A 6 QKHIISINDLSRDDLNLVLATAAKLKA 32 (310)
T ss_dssp TCCBCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CCCccchhhCCHHHHHHHHHHHHHHHh
Confidence 489999999999999999999888875
No 71
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=45.71 E-value=21 Score=24.86 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=23.7
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
||.-++.||+.+|+..+.+.+..+.+.
T Consensus 3 rhll~~~dls~~ei~~ll~~A~~lk~~ 29 (307)
T 3tpf_A 3 KHFLTLRDFSKEEILSLVNHASELKKE 29 (307)
T ss_dssp CCBSCGGGSCHHHHHHHHHHHHHHHHS
T ss_pred CcCCchhhCCHHHHHHHHHHHHHHHhc
Confidence 788899999999999999988887654
No 72
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=44.46 E-value=23 Score=24.94 Aligned_cols=30 Identities=17% Similarity=0.085 Sum_probs=25.3
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
.||.-++.||+.+|+..+.+.+..+.+..+
T Consensus 7 ~rhlls~~dls~~ei~~ll~~A~~lk~~~~ 36 (328)
T 3grf_A 7 TRHLLTISALCPKELAYLIDRALDMKKNPA 36 (328)
T ss_dssp SCCBSSGGGSCHHHHHHHHHHHHHHHHCGG
T ss_pred CcccCchhhCCHHHHHHHHHHHHHHHhhhh
Confidence 489999999999999999998888766443
No 73
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=44.35 E-value=18 Score=24.98 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=23.3
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHH
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGT 43 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~ 43 (96)
||.-++.|++.+|+..+.+.+..+.+
T Consensus 2 rh~ls~~dls~~ei~~ll~~A~~lk~ 27 (291)
T 3d6n_B 2 RSLISSLDLTREEVEEILKYAKEFKE 27 (291)
T ss_dssp CCBCCGGGCCHHHHHHHHHHHHHHHT
T ss_pred CccCchhhCCHHHHHHHHHHHHHHHh
Confidence 78889999999999999998888765
No 74
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=43.86 E-value=26 Score=24.82 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=24.9
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
..||.-++.||+.+|+..+.+.+..+.+.
T Consensus 34 ~~rhlLsi~dls~~ei~~ll~~A~~lk~~ 62 (340)
T 4ep1_A 34 NTKDLLTLEELTQEEIISLIEFAIYLKKN 62 (340)
T ss_dssp SCSCBSSGGGSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCccchhhCCHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999988877653
No 75
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=43.69 E-value=23 Score=21.68 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh----cCCCceEEEEecCCC----CCCCcceEEEEEe
Q 034378 24 GDLTADETRDLWLTAQTVGTQLESY----HKASSLAFAIQDGPQ----AGQTVPHVHIHIV 76 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~~----~~~~~~~i~~~~~~~----~gq~v~H~HiHii 76 (96)
.+|++.|+.+|.+++.++.+.+... .+.+.+.+-...++. .|. -..+.+++|
T Consensus 32 iELTe~E~~~f~~Ll~qL~~~~~~i~~eLM~EE~I~lE~E~~~~W~eleG~-~~~~sLr~I 91 (127)
T 2it9_A 32 IELDKSEWKILVEVVMELCDQYKLVKEQLMGDEDITLELERRPWLAILNGD-QYGWNLRLI 91 (127)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHTTTCCTTCEEEEEEEETTEEEEEEEE-TTEEEEEEE
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHhcchhheeeeecCccEEEEeecc-cCeeEEEEE
Confidence 4799999999999999998877654 244566665544432 121 135666655
No 76
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=43.59 E-value=27 Score=16.57 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 034378 24 GDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
.|-+.||+......++.-+..+-
T Consensus 10 ~dA~~Eela~Y~~~LrhYiNlvT 32 (36)
T 2bf9_A 10 DDAPVEDLIRFYNDLQQYLNVVT 32 (36)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999998877664
No 77
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=43.53 E-value=23 Score=24.58 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=23.5
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHH
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGT 43 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~ 43 (96)
||.-++.||+.+|+..|.+.+..+.+
T Consensus 2 rh~ls~~dls~~ei~~ll~~A~~lk~ 27 (299)
T 1pg5_A 2 KHIISAYNFSRDELEDIFALTDKYSK 27 (299)
T ss_dssp CCBCSGGGCCHHHHHHHHHHHHHHHS
T ss_pred CccCchhhCCHHHHHHHHHHHHHHHh
Confidence 78889999999999999999888865
No 78
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=43.15 E-value=17 Score=21.03 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 034378 24 GDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l 45 (96)
..++++|...+..+++++.+.+
T Consensus 117 ~~l~~~e~~~l~~~l~~l~~~l 138 (139)
T 3eco_A 117 SQLSEEENEQMKANLTKMLSSL 138 (139)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHHhc
Confidence 5677777777777777776554
No 79
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=43.10 E-value=25 Score=25.09 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=24.2
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
..||+-++.|++.+|+..|.+.+..+.+.
T Consensus 22 ~~rh~lsi~dls~~ei~~ll~~A~~lk~~ 50 (359)
T 1zq6_A 22 SLKHFLNTQDWSRAELDALLTQAALFKRN 50 (359)
T ss_dssp -CCCBSCGGGSCHHHHHHHHHHHHHHHHC
T ss_pred cCCCcCchhhCCHHHHHHHHHHHHHHHhc
Confidence 35899999999999999999888877653
No 80
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=43.03 E-value=19 Score=25.04 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.8
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHH
Q 034378 18 RDAVRFGDLTADETRDLWLTAQTVGT 43 (96)
Q Consensus 18 ~H~~~l~dl~~~e~~~l~~~~~~v~~ 43 (96)
||.-++.||+.+|+..+.+.+..+.+
T Consensus 2 rhlls~~dls~~ei~~ll~~A~~lk~ 27 (304)
T 3r7f_A 2 KHLTTMSELSTEEIKDLLQTAQELKS 27 (304)
T ss_dssp CCBCCGGGSCHHHHHHHHHHHHHHHT
T ss_pred CccCchhhCCHHHHHHHHHHHHHHHc
Confidence 78889999999999999988887764
No 81
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=42.77 E-value=19 Score=20.99 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=16.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q 034378 23 FGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
+..++++|...+..+++++.+.+
T Consensus 120 ~~~l~~~e~~~l~~~L~~l~~~l 142 (143)
T 3oop_A 120 FAGVTRTDLEQFTAILKNISTNI 142 (143)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHHHHhc
Confidence 35677888888877777776543
No 82
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=42.11 E-value=32 Score=25.09 Aligned_cols=30 Identities=23% Similarity=0.147 Sum_probs=26.1
Q ss_pred CcccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 17 k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
.||.-++.||+.+|+..|.+.+..+.+..+
T Consensus 21 ~rh~Lsi~Dls~eei~~Ll~~A~~lK~~~~ 50 (418)
T 2yfk_A 21 ENDFFLTWEKTRDELEAVFTVADTLRYLRE 50 (418)
T ss_dssp TCCBCCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchhhCCHHHHHHHHHHHHHHHhhhh
Confidence 589999999999999999999998876543
No 83
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=41.91 E-value=24 Score=20.59 Aligned_cols=24 Identities=4% Similarity=0.084 Sum_probs=17.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
+..++++|...+..+++++.+.++
T Consensus 125 ~~~l~~~e~~~l~~~l~~l~~~l~ 148 (150)
T 2rdp_A 125 LESFSDEEIVVFERCLRKLHQEMT 148 (150)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHh
Confidence 356788888888888888777664
No 84
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=41.80 E-value=24 Score=21.05 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=20.5
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 22 RFGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 22 ~l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
.+.+++++|...|..+++++.+.+.
T Consensus 118 ~l~~l~~ee~~~l~~~L~~l~~~~~ 142 (147)
T 4b8x_A 118 GLGAYDAEECGEIFAMLRPLRVAAG 142 (147)
T ss_dssp GTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 4678999999999999888876653
No 85
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=41.76 E-value=31 Score=19.75 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=20.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
+..+++++...+..+++++.+.+++
T Consensus 115 ~~~l~~~e~~~l~~~l~~~~~~l~~ 139 (142)
T 3bdd_A 115 NQILTVEESEQFLATLDKLLIGLQN 139 (142)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3568899999999999988887764
No 86
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.53 E-value=23 Score=22.13 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=16.8
Q ss_pred cCCcCCCCHHHHHHHHHHHHHH
Q 034378 20 AVRFGDLTADETRDLWLTAQTV 41 (96)
Q Consensus 20 ~~~l~dl~~~e~~~l~~~~~~v 41 (96)
..+++.|+++|...+.+++++-
T Consensus 11 ~~dLs~LteeEr~~Il~VL~Rd 32 (153)
T 2zet_C 11 RLDLSTLTDEEAEHVWAVVQRD 32 (153)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHhH
Confidence 3579999999988877766543
No 87
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=41.44 E-value=34 Score=19.92 Aligned_cols=25 Identities=4% Similarity=-0.047 Sum_probs=18.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
+..++++|...+..+++++.+.+++
T Consensus 123 ~~~l~~~e~~~l~~~l~~l~~~l~~ 147 (152)
T 3bj6_A 123 SEGFSSVELTAYHKVQLALTRFFAD 147 (152)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888777764
No 88
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=41.23 E-value=14 Score=21.57 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 24 GDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
..++++|...+..+++++.+.+++.+
T Consensus 115 ~~l~~~e~~~l~~~l~~l~~~l~~~~ 140 (145)
T 3g3z_A 115 ATFGDKRTTRLFADLDALAEVMEKTI 140 (145)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888777654
No 89
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=40.86 E-value=28 Score=20.66 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=19.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
+..++++|...+..+++++.+.+++
T Consensus 135 ~~~l~~~e~~~l~~~l~~l~~~l~~ 159 (162)
T 3cjn_A 135 FQGITPQERQAFLATLNKMLANIRV 159 (162)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHCS
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 4568888888888888888777653
No 90
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=40.74 E-value=31 Score=16.37 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 034378 24 GDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
.|-+.||+......++.-+..+-
T Consensus 10 ~dA~pEela~Y~~~Lr~YiNlvT 32 (36)
T 1bba_A 10 DNATPEQMAQYAAELRRYINMLT 32 (36)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 56788999999998888776653
No 91
>2nvn_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 2.50A {Synechococcus elongatus} SCOP: d.18.1.3
Probab=40.71 E-value=24 Score=21.40 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhc----CCCceEEEEecCCC----CCCCcceEEEEEe
Q 034378 24 GDLTADETRDLWLTAQTVGTQLESYH----KASSLAFAIQDGPQ----AGQTVPHVHIHIV 76 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~~~----~~~~~~i~~~~~~~----~gq~v~H~HiHii 76 (96)
.+|++.|+.+|.+++.++.+.+...- +.+.+.+-...++. .|. -..+.+++|
T Consensus 34 iELTe~E~~~f~~Ll~qL~~~~~~i~~eLM~EE~I~lE~E~~~~W~eleG~-~~~~sLr~I 93 (122)
T 2nvn_A 34 VELTAAEMADFCRLVQQLAETIAAIAPELMPEERLQIEAESALLWLEAEGF-ADAYELRLI 93 (122)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHTSCCCSSCSSCEEEEEECSSEEEEEEEE-TTEEEEEEE
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhheeeeecCccEEEEeecc-cCeeEEEEE
Confidence 48999999999999999998887553 34566665544432 121 135666655
No 92
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=40.18 E-value=35 Score=18.31 Aligned_cols=22 Identities=9% Similarity=0.136 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 034378 26 LTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 26 l~~~e~~~l~~~~~~v~~~l~~ 47 (96)
|+.+++..|.+.+..+-+++++
T Consensus 44 L~~~qw~~l~~~~~~I~~ai~~ 65 (66)
T 1pcf_A 44 LNPEQWSQLKEQISDIDDAVRK 65 (66)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999888875
No 93
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=39.91 E-value=20 Score=21.43 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=18.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHH
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
+..++++|...+..+++++.+.++
T Consensus 136 ~~~l~~~e~~~l~~~L~~l~~~l~ 159 (161)
T 3e6m_A 136 VGNVDPDKLQTCIEVLGEILKGKT 159 (161)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhh
Confidence 356788888888888888777654
No 94
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=39.73 E-value=22 Score=20.68 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=16.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q 034378 23 FGDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l 45 (96)
+..++++|...+..+++++.+.+
T Consensus 123 ~~~l~~~e~~~l~~~l~~l~~~l 145 (146)
T 3tgn_A 123 ATQFTPNEQKVIQRFLTALVGEI 145 (146)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhc
Confidence 45678888888888777776654
No 95
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=39.62 E-value=31 Score=20.17 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
+..++++|...+..+++++.+.+++.
T Consensus 120 ~~~l~~~e~~~l~~~l~~l~~~l~~~ 145 (155)
T 1s3j_A 120 LSFLTEEEMLQAAHITAKLAQAAETD 145 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 45788999999999999998888764
No 96
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=38.65 E-value=29 Score=19.83 Aligned_cols=22 Identities=23% Similarity=0.036 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 034378 24 GDLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l 45 (96)
..++++|...+..+++++.+.+
T Consensus 117 ~~l~~~e~~~l~~~l~~l~~~l 138 (139)
T 3bja_A 117 GCFTKEEEGILEDLLLKWKKHL 138 (139)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhc
Confidence 4566777777777766665543
No 97
>2asw_A Hypothetical protein AF1503; homodimer, parallel coiled-coil, complementary X-DA packing, unknown function; NMR {Archaeoglobus fulgidus} SCOP: a.274.1.1 PDB: 2asx_A
Probab=38.15 E-value=32 Score=15.83 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhc
Q 034378 27 TADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 27 ~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
..+|+.+|...+..+...++..+
T Consensus 33 ~~dEi~~l~~~~n~m~~~l~~~i 55 (56)
T 2asw_A 33 RADEIGILAKSIERLRRSLKVAM 55 (56)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHh
Confidence 35689999999999998887653
No 98
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=37.81 E-value=25 Score=21.06 Aligned_cols=26 Identities=4% Similarity=0.037 Sum_probs=21.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
+..++++|...+..+++++.+.+++.
T Consensus 129 ~~~l~~~e~~~l~~~L~~l~~~l~~~ 154 (162)
T 3k0l_A 129 LQGVDINLAFLIRNNLELMVKNLSTF 154 (162)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTCC-
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999998887653
No 99
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=37.52 E-value=34 Score=20.22 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=19.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
+..++++|...+..+++++.+.++...
T Consensus 132 ~~~l~~~e~~~l~~~l~~l~~~~~~~~ 158 (162)
T 2fa5_A 132 MSVFSAEEQQTLERLIDRLAKDGLPRM 158 (162)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHhhhhhc
Confidence 356788888888888888877776544
No 100
>1s28_A ORF1; type III chaperone; 3.00A {Pseudomonas syringae PV} SCOP: d.198.1.1
Probab=35.20 E-value=68 Score=19.62 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=24.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYHK 50 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~~ 50 (96)
+.|++.++...+.+.+-.++..+++.|+
T Consensus 103 L~El~~v~mr~vFE~l~~~A~~ikk~f~ 130 (132)
T 1s28_A 103 LLNLDNVEMRRVFEALLNLSGEVKKTFG 130 (132)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhcccHHHHHHHHHHHHHHHHHHHhhC
Confidence 7899999999999999999998888775
No 101
>3ueb_A Putative uncharacterized protein; alpha and beta protein (A+B), unknown function; 1.98A {Thermococcus onnurineus}
Probab=35.14 E-value=44 Score=19.41 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=17.7
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 034378 23 FGDLTADETRDLWLTAQTVG 42 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~ 42 (96)
+-+|+++++.++..++|++.
T Consensus 15 LPeLsEe~lieiGelaQ~~i 34 (110)
T 3ueb_A 15 LPELSEEQLIEIGELAQETI 34 (110)
T ss_dssp CTTSCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHH
Confidence 77899999999999888765
No 102
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation; 1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB: 2f4f_A 2ec2_A
Probab=34.98 E-value=68 Score=18.63 Aligned_cols=36 Identities=6% Similarity=-0.054 Sum_probs=21.6
Q ss_pred CCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 6 QYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 6 p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
|-...|+.+.+|.-..=|. ++....+.+.++.+.+.
T Consensus 11 ~~~~yhi~~~~~~R~~v~~---~~~~~~l~~~l~~~~~~ 46 (133)
T 2f5g_A 11 YLCNYHFVWIPKHRRNTLV---NEIAEYTKEVLKSIAEE 46 (133)
T ss_dssp EECEEEEEECBSSCTTCSC---HHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEecCcchhhhc---hhHHHHHHHHHHHHHHh
Confidence 4456788888877765343 44555555555555544
No 103
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=32.96 E-value=30 Score=20.18 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=14.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 034378 23 FGDLTADETRDLWLTAQTVGT 43 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~ 43 (96)
+..++++|...+..+++++.+
T Consensus 126 ~~~l~~~e~~~l~~~L~~l~~ 146 (148)
T 3jw4_A 126 TKGLTKDEQKQLMSILIKVNR 146 (148)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHH
Confidence 456777777777777776654
No 104
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=31.33 E-value=53 Score=18.49 Aligned_cols=20 Identities=15% Similarity=0.116 Sum_probs=15.3
Q ss_pred CCcCCCCHHHHHHHHHHHHH
Q 034378 21 VRFGDLTADETRDLWLTAQT 40 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~ 40 (96)
.+++|++++|+.+|.+.+..
T Consensus 5 ~~i~DyTe~Efi~lv~~I~~ 24 (85)
T 1gxg_A 5 NSISDYTETEFKKIIEDIIN 24 (85)
T ss_dssp SSTTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHHHHHHHHHh
Confidence 46889999998888776543
No 105
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=31.08 E-value=24 Score=21.67 Aligned_cols=23 Identities=35% Similarity=0.264 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 034378 24 GDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
..++++|...|..+++++.+.++
T Consensus 156 ~~l~~~e~~~l~~~L~~l~~~l~ 178 (181)
T 2fbk_A 156 APLSAQEQRTLEELAGRMLAGLE 178 (181)
T ss_dssp TTSCTTHHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHh
Confidence 45666666667666666666554
No 106
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=30.46 E-value=47 Score=19.40 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 034378 24 GDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
..++++|...+..+++++.+.++
T Consensus 129 ~~l~~~e~~~l~~~l~~l~~~l~ 151 (153)
T 2pex_A 129 SACSLDELRQLKQELEKLRSSLG 151 (153)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999988887764
No 107
>1m55_A REP protein; endonuclease, rolling circle replication, viral protein; 1.40A {Adeno-associated virus - 5} SCOP: d.89.1.3 PDB: 1rz9_A 1uut_A
Probab=30.16 E-value=1.2e+02 Score=19.90 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEE
Q 034378 32 RDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHI 73 (96)
Q Consensus 32 ~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~Hi 73 (96)
..--.+.+.+.....+.+. .++.+.++..+ |..-+|+|+
T Consensus 54 t~~erl~~~~l~~~~~~~~-~~~~~FlQlE~--~~~~fHlHv 92 (197)
T 1m55_A 54 TVADRIRRVFLYEWNKFSK-QESKFFVQFEK--GSEYFHLHT 92 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SCCCEEEEEEE--CSSCEEEEE
T ss_pred hHHHHHHHHHHHHHHhhcC-cCCCeEEEecC--CCCCceEEE
Confidence 3333344455555556565 55555555443 233344444
No 108
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=29.07 E-value=53 Score=15.63 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 24 GDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
.+-+.||+......++.-...+.+
T Consensus 10 ~~a~pEela~Y~~~Lr~YinlvTR 33 (37)
T 1f8p_A 10 EDAPAEDLARYYSALRHYINLITR 33 (37)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcc
Confidence 456788888888888887776654
No 109
>1pu1_A Hypothetical protein MTH677; structural genomics, alpha and beta protein (A+B), unknown function; NMR {Methanothermobacterthermautotrophicus} SCOP: d.266.1.1
Probab=28.14 E-value=91 Score=17.97 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=18.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 034378 23 FGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
+-.|+++++.++...++.+...
T Consensus 6 L~kLSe~eL~eIse~~~~~i~~ 27 (94)
T 1pu1_A 6 LRKLTEGDLDEISSFLHNTISD 27 (94)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHH
Confidence 7789999999999988887653
No 110
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A 3ror_A
Probab=27.95 E-value=95 Score=20.77 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=23.8
Q ss_pred CCCCCCCccccEEEeCCcccCCc------------------CCCCHHHHHHHHHHHHHHHHHHH
Q 034378 1 MSSIEQYAFGPFKIDPRRDAVRF------------------GDLTADETRDLWLTAQTVGTQLE 46 (96)
Q Consensus 1 ~~~~~p~~~g~~lIiPk~H~~~l------------------~dl~~~e~~~l~~~~~~v~~~l~ 46 (96)
||+.+|+.|| .|.|++.+.+- .--+++|+..+-++.+...++++
T Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~iKs~~EI~~~r~A~~i~~~a~~ 62 (285)
T 3pka_A 1 MPSRTALSPG--VLSPTRPVPNWIARPEYVGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALA 62 (285)
T ss_dssp -CCCCCCCCC--CCCCCCCCCTTSCCCTTTTSSSCSCSCSCSBCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccc--ccCCCCCCcccCCCCcccccCCCCcccceecCCHHHHHHHHHHHHHHHHHHH
Confidence 7777888887 44555542210 11366777666665555544444
No 111
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=27.59 E-value=44 Score=19.31 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 034378 25 DLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 25 dl~~~e~~~l~~~~~~v~~~ 44 (96)
.++++|...+..+++++.+.
T Consensus 119 ~l~~~e~~~l~~~L~~l~~~ 138 (140)
T 3hsr_A 119 NISEREASDIINNLRNFVSK 138 (140)
T ss_dssp CCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 78999999999988887654
No 112
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=27.55 E-value=76 Score=19.33 Aligned_cols=30 Identities=13% Similarity=0.005 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEEecC
Q 034378 32 RDLWLTAQTVGTQLESYHKASSLAFAIQDG 61 (96)
Q Consensus 32 ~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~ 61 (96)
.++-++++.+.+.+.+.++++++.+...+.
T Consensus 10 ldl~~il~~~v~~v~~~l~~DRv~Iy~f~~ 39 (171)
T 4glq_A 10 RDRQAIFETLVAKGRELLACDRVIVYAFDD 39 (171)
T ss_dssp THHHHHHHHHHHHHHHHHTCSEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEEEeC
Confidence 356677888888899999999988876543
No 113
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=26.37 E-value=61 Score=18.65 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=15.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 034378 23 FGDLTADETRDLWLTAQTVGT 43 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~ 43 (96)
+..++++|...+..+++++.+
T Consensus 120 ~~~l~~~e~~~l~~~l~~l~~ 140 (142)
T 3ech_A 120 FAPLTPVEQATLVHLLDQCLA 140 (142)
T ss_dssp HTTSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHh
Confidence 456788888888888877754
No 114
>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A* 1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A
Probab=26.16 E-value=1.6e+02 Score=20.19 Aligned_cols=20 Identities=15% Similarity=-0.049 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 034378 28 ADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 28 ~~e~~~l~~~~~~v~~~l~~ 47 (96)
+.......++++..++.+++
T Consensus 104 ~~i~~Ah~~AV~~al~~lE~ 123 (293)
T 1omh_A 104 AEIIKAHDRAVARTLEQAEA 123 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777776
No 115
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=26.11 E-value=41 Score=19.44 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 034378 25 DLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 25 dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
.++++|...+...++++.+.+++
T Consensus 123 ~l~~~e~~~l~~~l~~l~~~l~~ 145 (147)
T 1z91_A 123 KQSGEDLKQLKSALYTLLETLHQ 145 (147)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Confidence 78889999999988888777643
No 116
>3io0_A ETUB protein; tamdem repeat of bacterial microcompartment domain in A single polypeptide chain, structural protein; 3.00A {Clostridium kluyveri dsm 555}
Probab=25.55 E-value=1e+02 Score=20.67 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 30 ETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 30 e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
+..+.-..++...+.+++.++. .+.. ...|+|+|++||-.
T Consensus 92 dVs~V~sAve~~~~~~~~~~~~---~~~~--------~~gh~~~~v~ar~~ 131 (230)
T 3io0_A 92 DVSDARRAVEIALKQTDKYLGN---VYLC--------DAGHLEVQYTARAS 131 (230)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTT---EEEE--------TTEEEEEEEESSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHH---heec--------CCCcEEEEEecChH
Confidence 3455666667677777766543 2332 24589999999854
No 117
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=25.08 E-value=98 Score=17.88 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCceEEE
Q 034378 29 DETRDLWLTAQTVGTQLESYHKASSLAFA 57 (96)
Q Consensus 29 ~e~~~l~~~~~~v~~~l~~~~~~~~~~i~ 57 (96)
.++.+++++++++.+++-+ |+.++...
T Consensus 47 Ge~devm~vv~~~~e~~~~--g~~RV~t~ 73 (104)
T 2ibo_A 47 GEFDELMRILKEALEVAGQ--EADNVFAN 73 (104)
T ss_dssp EEHHHHHHHHHHHHHHHHT--SCSCEEEE
T ss_pred cCHHHHHHHHHHHHHHHHc--CCCEEEEE
Confidence 4688999999999888887 66665444
No 118
>2vjv_A Transposase ORFA; DNA-binding protein, protein-DNA complex, HUH motif, DNA stem loop, transposition; 1.90A {Helicobacter pylori} SCOP: d.58.57.1 PDB: 2vhg_A 2vic_A 2vju_A 2vih_A 2a6m_A 2a6o_A
Probab=24.16 E-value=1.1e+02 Score=18.60 Aligned_cols=34 Identities=12% Similarity=-0.065 Sum_probs=21.3
Q ss_pred ccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 8 AFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 8 ~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
...|++.++|.-..=| .++....+.++++++.+.
T Consensus 21 ~~YHiv~~~k~R~~vf---~~~~~~~l~~~l~~~~~~ 54 (159)
T 2vjv_A 21 CKYHIVWCPKYRRKVL---VGAVEMRLKEIIQEVAKE 54 (159)
T ss_dssp CEEEEEECBGGGCCCC---SHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeccCCcccc---CccHHHHHHHHHHHhhcc
Confidence 4678888887766533 345566666666655443
No 119
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.04 E-value=32 Score=20.94 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=11.9
Q ss_pred CCcCCCCHHHHHHHHHHHHH
Q 034378 21 VRFGDLTADETRDLWLTAQT 40 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~ 40 (96)
.+++.|+++|...+++++++
T Consensus 5 ~dls~LteeE~~~Il~Vl~R 24 (134)
T 1zbd_B 5 RKQEELTDEEKEIINRVIAR 24 (134)
T ss_dssp ---CCCCSSHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHhh
Confidence 35777888887777665543
No 120
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=23.96 E-value=89 Score=17.67 Aligned_cols=20 Identities=15% Similarity=-0.057 Sum_probs=13.9
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 034378 23 FGDLTADETRDLWLTAQTVG 42 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~ 42 (96)
+..++++|...+..+++++.
T Consensus 119 ~~~l~~~e~~~l~~~l~~l~ 138 (141)
T 3bro_A 119 TSGLNKEEVVFLEKILKRMI 138 (141)
T ss_dssp TTTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHH
Confidence 34677787777777777664
No 121
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=23.83 E-value=37 Score=21.04 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
+..++++|...+..+++++.+.+++..
T Consensus 126 ~~~l~~ee~~~l~~~L~~l~~~l~~~~ 152 (189)
T 3nqo_A 126 FHEFTKDELETLWSLLKKMYRFNGEEQ 152 (189)
T ss_dssp TTTCCHHHHHHHHHHHHHHHTTTSCCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999988877643
No 122
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=23.61 E-value=45 Score=18.86 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=23.7
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 22 RFGDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 22 ~l~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
++..+++++...+...+.-+.-+++-.+
T Consensus 34 NL~~ld~~~AqRivDF~sG~~yal~G~i 61 (87)
T 3p04_A 34 DMSLLSREEARRIVDFAAGLCFALHGKM 61 (87)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ECCCCCHHHHHHHHHHhccceEEeccEE
Confidence 7899999999999999988888887543
No 123
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=23.17 E-value=75 Score=17.92 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 034378 24 GDLTADETRDLWLTAQTV 41 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v 41 (96)
.+++++|+.+|..+++++
T Consensus 106 ~~ls~ee~~~l~~~L~~~ 123 (126)
T 1sd4_A 106 EELNNKEIEELRDILNDI 123 (126)
T ss_dssp TCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 478888888888887765
No 124
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=23.16 E-value=53 Score=21.71 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=19.0
Q ss_pred ccEEEeCCcccCCcCCCCHHHHHHH
Q 034378 10 GPFKIDPRRDAVRFGDLTADETRDL 34 (96)
Q Consensus 10 g~~lIiPk~H~~~l~dl~~~e~~~l 34 (96)
-..+|+|.|.. .-.+++++++.+|
T Consensus 158 ~rYlVLP~rPa-gte~~see~La~l 181 (209)
T 4fm4_A 158 TRYMVLPLRPQ-GTEDWSEAQLATL 181 (209)
T ss_dssp EEEEEECCCCT-TCTTCCHHHHHTT
T ss_pred eEEEEeCCCCC-CcCCCCHHHHHHH
Confidence 34699999995 4567999998876
No 125
>3awu_A Tyrosinase; tyrosinase, binary complex, type-3 copper, copper transfer, oxidoreductase-metal transport complex; 1.16A {Streptomyces castaneoglobisporus} PDB: 1wx2_A 1wx4_A 1wx5_A 1wx3_A 2ahk_A 2ahl_A 2zmx_A 2zmy_A 2zmz_A 2zwd_A 2zwe_A* 2zwf_A* 2zwg_A* 3aws_A 3awt_A 1wxc_A 3awv_A 3aww_A 3awx_A 3awy_A ...
Probab=22.91 E-value=75 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=18.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHH
Q 034378 21 VRFGDLTADETRDLWLTAQTVGT 43 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~v~~ 43 (96)
.++.+|+.+|+.++.++++.+.+
T Consensus 5 ke~~~Ls~~er~~yi~Av~~l~~ 27 (281)
T 3awu_A 5 KNQATLTADEKRRFVAAVLELKR 27 (281)
T ss_dssp CBGGGCCHHHHHHHHHHHHHHHH
T ss_pred cchHHCCHHHHHHHHHHHHHHHH
Confidence 45778899999999988887764
No 126
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=22.88 E-value=84 Score=17.81 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=16.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHH
Q 034378 21 VRFGDLTADETRDLWLTAQTV 41 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~v 41 (96)
.+++|.+++|+.+|...+-..
T Consensus 5 ~~i~DYTE~EFl~fv~~i~~~ 25 (87)
T 1unk_A 5 NSISDYTEAEFVQLLKEIEKE 25 (87)
T ss_dssp CSGGGSCHHHHHHHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHhC
Confidence 468899999988887766544
No 127
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=22.67 E-value=54 Score=21.80 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.0
Q ss_pred ccEEEeCCcccCCcCCCCHHHHHHH
Q 034378 10 GPFKIDPRRDAVRFGDLTADETRDL 34 (96)
Q Consensus 10 g~~lIiPk~H~~~l~dl~~~e~~~l 34 (96)
-..||+|.|.-. -.+|+++++.+|
T Consensus 173 ~rylVLP~RP~g-te~lseeqLa~l 196 (216)
T 3hht_A 173 IRFMVLPQRPEG-TEGMTEEELAKL 196 (216)
T ss_dssp CEEEEECCCCTT-CTTCCHHHHHTT
T ss_pred eEEEEecCCCCC-CCCCCHHHHHHh
Confidence 457999999975 358999988765
No 128
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=22.65 E-value=67 Score=18.46 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=14.9
Q ss_pred CCcCCCCHHHHHHHHHHHHH
Q 034378 21 VRFGDLTADETRDLWLTAQT 40 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~~ 40 (96)
++++|.+++|+.+|.+.+..
T Consensus 5 ~~i~DyTe~Efi~lv~~I~~ 24 (94)
T 3u43_A 5 HSISDYTEAEFLEFVKKICR 24 (94)
T ss_dssp SSGGGSBHHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHHHHHHHHHh
Confidence 45888999998887775543
No 129
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=22.65 E-value=43 Score=19.26 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 034378 25 DLTADETRDLWLTAQTVGTQL 45 (96)
Q Consensus 25 dl~~~e~~~l~~~~~~v~~~l 45 (96)
.++++|...+..+++++.+.+
T Consensus 120 ~l~~~e~~~l~~~l~~~~~~l 140 (142)
T 2bv6_A 120 SLSQDEVKELNRLLGKVIHAF 140 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 678888888777777765543
No 130
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=22.61 E-value=1.5e+02 Score=19.70 Aligned_cols=28 Identities=7% Similarity=-0.040 Sum_probs=24.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYHK 50 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~~ 50 (96)
|+.++++|...+-.++.+.+++++..+.
T Consensus 180 L~~fs~~E~~~l~~~i~~a~~av~~~~~ 207 (222)
T 3v2i_A 180 LKPPRKEEQDVIDAAIERALAVMPAVVK 207 (222)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999998887654
No 131
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=22.60 E-value=1.2e+02 Score=19.51 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=22.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
++.++++|...+-.++...+++++..+
T Consensus 150 L~~f~~~E~~~l~~~i~~a~~a~~~~~ 176 (193)
T 2pth_A 150 LGKPPVSEQKLIDEAIDEAARCTEMWF 176 (193)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999988888888888876654
No 132
>2plg_A TLL0839 protein; hypothetical, uncharacterized, DUF1821, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 2.60A {Synechococcus elongatus} SCOP: d.198.1.2
Probab=22.20 E-value=1.5e+02 Score=18.60 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=25.5
Q ss_pred ccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHH----HHHhhcCCC
Q 034378 8 AFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGT----QLESYHKAS 52 (96)
Q Consensus 8 ~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~----~l~~~~~~~ 52 (96)
..+.++++-.++ +++|+.+|+......+-+++. .|.+.||+.
T Consensus 111 ~~n~V~~v~~r~---ls~Ld~~E~~~aIt~V~~lAD~~Dd~L~~~fg~~ 156 (163)
T 2plg_A 111 AEEQVQVVASRT---LGGITAGEISRLITIVATLADDYDDALRAEFKGE 156 (163)
T ss_dssp ETTEEEEEEEEE---CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ECCEEEEEEEEE---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 346667776666 667788887666555555554 455556654
No 133
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=22.18 E-value=1.2e+02 Score=17.28 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=21.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYHKA 51 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~~~ 51 (96)
....+.++..+....++++.+.+++.+..
T Consensus 96 ~~~~~~~~a~~al~~A~~~i~~v~~~l~~ 124 (126)
T 2hsb_A 96 YKEVSKDLAIKILKDAEIFVQKAKNAVNK 124 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34577888888888888888877776543
No 134
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=22.06 E-value=59 Score=18.35 Aligned_cols=19 Identities=26% Similarity=0.101 Sum_probs=14.6
Q ss_pred CCcCCCCHHHHHHHHHHHH
Q 034378 21 VRFGDLTADETRDLWLTAQ 39 (96)
Q Consensus 21 ~~l~dl~~~e~~~l~~~~~ 39 (96)
.+++|.+++|+.+|.+.+.
T Consensus 5 ~~i~DyTe~Efi~lv~~I~ 23 (86)
T 1fr2_A 5 HSISDYTEAEFLQLVTTIC 23 (86)
T ss_dssp SCGGGSBHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHHHHHHHHH
Confidence 4688899999888877654
No 135
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=21.88 E-value=1.2e+02 Score=19.76 Aligned_cols=27 Identities=4% Similarity=0.044 Sum_probs=22.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
|..++++|...+-.++.+.+++++..+
T Consensus 164 L~~f~~~E~~~l~~~i~~a~~a~~~~~ 190 (205)
T 1ryb_A 164 LQKFSSEERVQIDTALEQGVDAVRTLV 190 (205)
T ss_dssp TSBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999898888888887655
No 136
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=21.66 E-value=1.2e+02 Score=20.41 Aligned_cols=28 Identities=18% Similarity=0.010 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 034378 24 GDLTADETRDLWLTAQTVGTQLESYHKA 51 (96)
Q Consensus 24 ~dl~~~e~~~l~~~~~~v~~~l~~~~~~ 51 (96)
.+|+++|+..+.+..+++.++..+..+.
T Consensus 253 ~~lt~~e~~~~~~~~~~~~~~~~~~~~~ 280 (288)
T 2p5i_A 253 ESLSADEWLLYEQHFARISERNEKLLAE 280 (288)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhhcchh
Confidence 4678888887777777777777766543
No 137
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=21.57 E-value=1.3e+02 Score=19.80 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=24.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYHK 50 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~~ 50 (96)
+..++++|...+-.++.+++++++..+.
T Consensus 170 L~~fs~~E~~~l~~~i~~a~~a~~~~~~ 197 (207)
T 3nea_A 170 LSNPSIAQKKDIDSAIDNGICFLDDIIN 197 (207)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999998887654
No 138
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=21.56 E-value=1.1e+02 Score=17.37 Aligned_cols=27 Identities=0% Similarity=0.062 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCceEEE
Q 034378 29 DETRDLWLTAQTVGTQLESYHKASSLAFA 57 (96)
Q Consensus 29 ~e~~~l~~~~~~v~~~l~~~~~~~~~~i~ 57 (96)
.++.+++++++++.+++.+ |+.++...
T Consensus 51 Ge~devm~vv~~~~e~~~~--g~~RV~~~ 77 (100)
T 2epi_A 51 GDLDEILKAFKEAHSTVLN--DVDRVVSS 77 (100)
T ss_dssp EEHHHHHHHHHHHHHHHHT--TSSEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHc--CCCEEEEE
Confidence 3588999999999888877 66665444
No 139
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=21.56 E-value=1e+02 Score=16.42 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=24.8
Q ss_pred eCCcccCCcCCCCHHHHHHHHHHHHHHHHH
Q 034378 15 DPRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (96)
Q Consensus 15 iPk~H~~~l~dl~~~e~~~l~~~~~~v~~~ 44 (96)
+|++....+..++++...++....+++...
T Consensus 36 ~~~~eL~~I~G~dE~~a~~l~~~A~~~l~~ 65 (70)
T 1u9l_A 36 VPMKELLEIEGLDEPTVEALRERAKNALAT 65 (70)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 578888889999999999998888877544
No 140
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=21.56 E-value=1.1e+02 Score=16.80 Aligned_cols=33 Identities=6% Similarity=0.132 Sum_probs=23.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEe
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQ 59 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~ 59 (96)
++.-+++...+|.+++.++.+.| |-.++|+-+|
T Consensus 54 isaendeqakelleliarllqkl----gykdinvrvn 86 (96)
T 2jvf_A 54 ISAENDEQAKELLELIARLLQKL----GYKDINVRVN 86 (96)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHH----TCSEEEEEEE
T ss_pred EEecChHHHHHHHHHHHHHHHHh----CCCceEEEEc
Confidence 45557777888887777666555 6677888775
No 141
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=21.20 E-value=1.4e+02 Score=17.79 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=33.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhcCC--CceEEEEecCC--CCCCCcceEEEEEeeCC
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYHKA--SSLAFAIQDGP--QAGQTVPHVHIHIVPRK 79 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~~~--~~~~i~~~~~~--~~gq~v~H~HiHiiPr~ 79 (96)
+..++.+...++... +.+.|....++ +.|.+-+.+.. ..|+..|-+++.+++|.
T Consensus 21 ~rgi~~e~v~~lS~~---Lid~La~i~~~~~e~fTle~i~s~~i~~G~~MP~VeV~~fgRt 78 (122)
T 1u9d_A 21 FRAVEAHIVESLVPT---LLNELSSLLSTARNAFTFELINTQYFAEGGVYPMVEVLWFGRE 78 (122)
T ss_dssp EESSCHHHHHHHHHH---HHHHHHHHHTCCGGGCEEEECCCCCCCTTCCCCEEEEEESCCC
T ss_pred ECCCCHHHHHHHhHH---HHHHHHHHHCCCcccEEEEEeeeEEEecCCCCCEEEEEEcCCC
Confidence 356677777766654 33444444444 46777654432 23577889999999863
No 142
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta structure, csgid, ligase, center for structural G of infectious diseases; HET: ADP AMP CIT; 1.40A {Clostridium perfringens} SCOP: d.143.1.0
Probab=20.98 E-value=95 Score=20.81 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=30.0
Q ss_pred eCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEE
Q 034378 15 DPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAF 56 (96)
Q Consensus 15 iPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i 56 (96)
+...|+..+.-++++++..+.++..++.+.+.+.+...++.+
T Consensus 136 i~~~~~~~~g~~~~ee~~~i~~~al~i~~~l~~~~~~~GiiL 177 (238)
T 3nua_A 136 INDYHAVGIGATTFEELNKIYEITAKVNEILKEAFKKQNINL 177 (238)
T ss_dssp ECHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred CCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 344454445556788899999999999988888876555544
No 143
>1xcr_A Hypothetical protein PTD012; structural genomics, zinc-containing fold, splice variant, A buffer, metal binding protein; 1.70A {Homo sapiens} SCOP: d.290.1.2
Probab=20.91 E-value=59 Score=22.89 Aligned_cols=37 Identities=5% Similarity=-0.042 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhcCCCceEE-----EEecCCCCCCCcceEEEEEeeCCCC
Q 034378 37 TAQTVGTQLESYHKASSLAF-----AIQDGPQAGQTVPHVHIHIVPRKAA 81 (96)
Q Consensus 37 ~~~~v~~~l~~~~~~~~~~i-----~~~~~~~~gq~v~H~HiHiiPr~~~ 81 (96)
.+.-+.+.|.+.||...+.+ ++.+| -+++||+|-++.
T Consensus 185 fv~ciR~~L~~~Yg~~~VgL~GGvFlik~G--------kak~HVMpdFs~ 226 (316)
T 1xcr_A 185 FVTCMRETLEKHYGNKPIGMGGTFIIQKGK--------VKSHIMPAEFSS 226 (316)
T ss_dssp HHHHHHHHHHHHHTTSCCEEEEEEEEEESE--------EEEEECCSSCCS
T ss_pred HHHHHHHHHHHHcCcceeeecceEEEEecC--------cEEEEeCCCCCC
Confidence 33445567888888776666 44433 578999996554
No 144
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=20.61 E-value=1e+02 Score=21.33 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 25 DLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 25 dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
+|+++|...|...++.+.+.+++.
T Consensus 290 ~L~~~E~~~l~~s~~~l~~~~~~~ 313 (326)
T 3pqe_A 290 NLNEKEKEQFLHSAGVLKNILKPH 313 (326)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999888888777764
No 145
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=20.51 E-value=1.3e+02 Score=19.37 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=23.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYHK 50 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~~ 50 (96)
|+.++.+|...+-.++.++.++++..+.
T Consensus 150 L~~f~~~E~~~l~~~i~~a~~~i~~~~~ 177 (193)
T 4hoy_A 150 LGKAPSNEQSLMDGAIDHALSKVKLLVQ 177 (193)
T ss_dssp TSBCCHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999988888887653
No 146
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=20.51 E-value=75 Score=14.30 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 034378 28 ADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 28 ~~e~~~l~~~~~~v~~~l~~ 47 (96)
+++...|-.+++++-+++++
T Consensus 5 ee~~r~l~~ivq~lq~r~dr 24 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDR 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776665
No 147
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=20.35 E-value=1.1e+02 Score=19.83 Aligned_cols=27 Identities=15% Similarity=-0.013 Sum_probs=22.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 034378 23 FGDLTADETRDLWLTAQTVGTQLESYH 49 (96)
Q Consensus 23 l~dl~~~e~~~l~~~~~~v~~~l~~~~ 49 (96)
++.++++|...+-.++.+.+++++..+
T Consensus 158 L~~f~~~E~~~l~~~i~~a~~a~~~~~ 184 (199)
T 4fyj_A 158 LGRAPRSEQELLDTSIDFALGVLPEML 184 (199)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHTHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999888888888877654
No 148
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}
Probab=20.35 E-value=53 Score=17.70 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=11.7
Q ss_pred cCCcCCCCHHHHHHH
Q 034378 20 AVRFGDLTADETRDL 34 (96)
Q Consensus 20 ~~~l~dl~~~e~~~l 34 (96)
+..++||+.+|+ ..
T Consensus 58 ~N~FaDlT~eEf-~~ 71 (80)
T 2l95_A 58 INHLADLTPEEF-AQ 71 (80)
T ss_dssp CCGGGTSSHHHH-HH
T ss_pred CcccccCCHHHH-HH
Confidence 577999999998 54
Done!