BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034380
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 63/90 (70%)
Query: 1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
MFV +PKA +FMKW+ HDW D+ CLK LKNCY+ALP+ GK+IV E I+P P++ + +K
Sbjct: 252 MFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATK 311
Query: 61 NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
+ + + + PG KERT +EF+ LA G
Sbjct: 312 GVVHIDVIMLAHNPGGKERTQKEFEDLAKG 341
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 96.7 bits (239), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 58/90 (64%)
Query: 1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
MF EVP TI MKW+LHDW D C +LKNCYDALP GK+++V+ I+P PE + S+
Sbjct: 253 MFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQ 312
Query: 61 NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
+ + + + PG +ER EF++LA G
Sbjct: 313 GVFHVDMIMLAHNPGGRERYEREFQALARG 342
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 59/90 (65%)
Query: 1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
MF VPK IF+KW+ HDW D+ CLK+LKNCY ALP+ GK+IV E I+P P+ I +K
Sbjct: 255 MFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATK 314
Query: 61 NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
+ + PG KERT +EF++LA+
Sbjct: 315 VVIHTDALMLAYNPGGKERTEKEFQALAMA 344
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 9/92 (9%)
Query: 1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
MF VP+ + +K V H+W D+ C++ L NC+ AL GK+I+VE I+PE P T SK
Sbjct: 261 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320
Query: 61 NISRLH----ITVSNLFPGAKERTLEEFKSLA 88
+S L ITV G +ERT ++++ L+
Sbjct: 321 LVSTLDNLMFITV-----GGRERTEKQYEKLS 347
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 2 FVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKN 61
F VP+ +K V H+W D+ C++ L NC+ AL GK+I+VE I+PE P T SK
Sbjct: 262 FASVPQGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKL 321
Query: 62 ISRLH----ITVSNLFPGAKERTLEEFKSLA 88
+S L ITV G +ERT ++++ L+
Sbjct: 322 VSTLDNLXFITV-----GGRERTEKQYEKLS 347
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDI 57
MF+ VPKA + +K VLHDW D C+KILK C +A+ + GK+IV++ ++ E + +
Sbjct: 245 MFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQ 304
Query: 58 ISKNISRLHITVSNLFPGAKERTLEEFKSLAI 89
+++ +++T+S + KER EE+K L I
Sbjct: 305 LTQIKLLMNVTISCV--NGKERNEEEWKKLFI 334
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDI 57
MF +P A + +KWVLHDW D+ LKILKN +A+ + GK+I+++ + E +
Sbjct: 245 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 304
Query: 58 ISKNISRLHITVSNLFPGAKERTLEEFKSL 87
+++ + + +F G KERT +E++ L
Sbjct: 305 LTELQLDYDLVMLTMFLG-KERTKQEWEKL 333
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDI 57
MF +P A + +KWVLHDW D+ LKILKN +A+ + GK+I+++ + E +
Sbjct: 244 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 303
Query: 58 ISKNISRLHITVSNLFPGAKERTLEEFKSL 87
+++ + + +F G KERT +E++ L
Sbjct: 304 LTELQLDYDLVMLTMFLG-KERTKQEWEKL 332
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDI 57
MF +P A + +KWVLHDW D+ LKILKN +A+ + GK+I+++ + E +
Sbjct: 241 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 300
Query: 58 ISKNISRLHITVSNLFPGAKERTLEEFKSL 87
+++ + + +F G KERT +E++ L
Sbjct: 301 LTELQLDYDLVMLTMFLG-KERTKQEWEKL 329
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDI 57
MF +P A + +K++LH+W D CL+ILK C +A+ + GK+ +++ ++ + + +
Sbjct: 240 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ 299
Query: 58 ISKNISRLHITVSNLFPGAKERTLEEFKSLAI 89
+++ +L + V+ KER EE+K L I
Sbjct: 300 VTQ--IKLLMDVNMACLNGKERNEEEWKKLFI 329
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 2 FVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDII 58
F +P A + +K++LH+W D CL+ILK C +A+ + GK+ +++ ++ + + + +
Sbjct: 241 FTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQV 300
Query: 59 SKNISRLHITVSNLFPGAKERTLEEFKSLAI 89
++ +L V+ KER EE+K L I
Sbjct: 301 TQ--IKLLXDVNXACLNGKERNEEEWKKLFI 329
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 4 EVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51
EVP A +K +LH+WGD+ ++IL NC P G+++V+++++PE
Sbjct: 244 EVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPE 291
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 5 VPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51
+P+A + VLHDW D C +L+ Y G I+V+ES++ E
Sbjct: 242 LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE 288
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 2 FVEVPKAQTIFM-KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
F +P +++ K VLHDW DD ++IL+ A +++V+++++ E P
Sbjct: 262 FETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAAS---- 317
Query: 61 NISRLHITVSNLFPGAKERTLEEFKSL 87
+ + + G ER+ EF +L
Sbjct: 318 --TLFVDLLLLVLVGGAERSESEFAAL 342
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHI 67
A + + +VL +W D+ L IL+ C AL G+++V++ D+ R
Sbjct: 249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD-------RADVEGDGADRFFS 301
Query: 68 TVSNL----FPGAKERTLEEFKSLA 88
T+ +L F G + RT +E LA
Sbjct: 302 TLLDLRXLTFXGGRVRTRDEVVDLA 326
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHI 67
A + + +VL +W D+ L IL+ C AL G+++V++ D+ R
Sbjct: 249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD-------RADVEGDGADRFFS 301
Query: 68 TVSNL----FPGAKERTLEEFKSLA 88
T+ +L F G + RT +E LA
Sbjct: 302 TLLDLRMLTFMGGRVRTRDEVVDLA 326
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 16 VLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM-PEFPETDIISKNISRLHITVSNLFP 74
VLHDW D + IL+ C +A G ++V+E++ E T + + ++ +
Sbjct: 244 VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLT---------YF 294
Query: 75 GAKERTLEEFKSLA 88
G KER+L E LA
Sbjct: 295 GGKERSLAELGELA 308
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE-------SIMPEFPETDIIS 59
KA I + +VL +W D ++IL C +AL G+I++ E S +F E D+
Sbjct: 249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDL-- 306
Query: 60 KNISRLHITVSNLFPGAKERTLEEFKSLA 88
R+ + F G RT E++ LA
Sbjct: 307 ----RMLV-----FLGGALRTREKWDGLA 326
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 1 MFVEVPKAQTIFM-KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46
M EVP I++ ++ D + L++L NC +A+ G+++V+E
Sbjct: 226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE 272
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 6 PKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM--PEFPETDIISKNI 62
P+A + +L+ + L + K +DA+ G++++++ ++ PE P D +S I
Sbjct: 255 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYI 313
>pdb|2BV8|B Chain B, The Crystal Structure Of Phycocyanin From Gracilaria
Chilensis.
pdb|2BV8|D Chain D, The Crystal Structure Of Phycocyanin From Gracilaria
Chilensis.
pdb|2BV8|F Chain F, The Crystal Structure Of Phycocyanin From Gracilaria
Chilensis.
pdb|2BV8|L Chain L, The Crystal Structure Of Phycocyanin From Gracilaria
Chilensis.
pdb|2BV8|N Chain N, The Crystal Structure Of Phycocyanin From Gracilaria
Chilensis.
pdb|2BV8|P Chain P, The Crystal Structure Of Phycocyanin From Gracilaria
Chilensis
Length = 172
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 22 DDLCLKILKNCYDALPEPGKIIVV 45
DD CL L+ Y AL PG + V
Sbjct: 106 DDRCLNGLRETYQALGTPGSSVAV 129
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 14 KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE-----SIMPEFPETDIISKNISRLHI 67
KWV +WGD+ + + Y L PG I+V+E S T+ I KN R+ +
Sbjct: 188 KWVHLNWGDEGLKRXFRRIYRHL-RPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQL 245
>pdb|1KTP|B Chain B, Crystal Structure Of C-Phycocyanin Of Synechococcus
Vulcanus At 1.6 Angstroms
pdb|1JBO|B Chain B, The 1.45a Three-Dimensional Structure Of C-Phycocyanin
From The Thermophylic Cyanobacterium Synechococcus
Elongatus
pdb|3O18|B Chain B, Crystal Structure Of C-Phycocyanin From Themosynechococcus
Vulcanus At 1.35 Angstroms Resolution
pdb|3O2C|B Chain B, Crystal Structure Of A Rod Form Of C-Phycocyanin From
Themosynechococcus Vulcanus At 1.5 Angstroms
pdb|3L0F|B Chain B, High Resolution Structure Of C-Phycocyanin From
Thermosynechococcus Elongatus
Length = 172
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 22 DDLCLKILKNCYDALPEPGKIIVV 45
DD CL L+ Y AL PG + V
Sbjct: 106 DDRCLNGLRETYQALGTPGSSVAV 129
>pdb|1I7Y|B Chain B, Crystal Structure Of C-Phycocyanin Of Synechococcus
Vulcanus At 2.5 Angstroms.
pdb|1ON7|B Chain B, Unmethylated Form Of C-Phycocyanin From Themosynechococcus
Vulcanus At 2.7a
Length = 172
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 22 DDLCLKILKNCYDALPEPGKIIVV 45
DD CL L+ Y AL PG + V
Sbjct: 106 DDRCLNGLRETYQALGTPGSSVAV 129
>pdb|3I0M|A Chain A, Structure Of The S. Pombe Nbs1 FhaBRCT-Repeat Domain
Length = 324
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 39 PGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKE 78
PG IV ++ + +ISK+IS+ H + L P K+
Sbjct: 20 PGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKD 59
>pdb|3HUE|A Chain A, Structure Of The S. Pombe Nbs1 Fha-Brct1-Brct2 Domains
Length = 341
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 39 PGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKE 78
PG IV ++ + +ISK+IS+ H + L P K+
Sbjct: 20 PGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKD 59
>pdb|3HUF|A Chain A, Structure Of The S. Pombe Nbs1-Ctp1 Complex
pdb|3HUF|B Chain B, Structure Of The S. Pombe Nbs1-Ctp1 Complex
pdb|3HUF|C Chain C, Structure Of The S. Pombe Nbs1-Ctp1 Complex
Length = 325
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 15 WVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFP 74
W++ GD ILK L PG IV ++ + +ISK+IS+ H + L P
Sbjct: 2 WIIEAEGD-----ILKGKSRILF-PGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTP 55
Query: 75 GAKE 78
K+
Sbjct: 56 SEKD 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,800,825
Number of Sequences: 62578
Number of extensions: 96258
Number of successful extensions: 339
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 36
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)