Query 034380
Match_columns 96
No_of_seqs 125 out of 1011
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 12:49:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 2.8E-28 6.1E-33 165.8 7.8 88 1-89 152-241 (241)
2 KOG3178 Hydroxyindole-O-methyl 99.9 1E-27 2.2E-32 169.4 7.4 96 1-96 230-326 (342)
3 TIGR02716 C20_methyl_CrtF C-20 99.7 1.5E-16 3.3E-21 111.6 9.8 92 1-94 208-300 (306)
4 PF05891 Methyltransf_PK: AdoM 99.5 1.2E-14 2.6E-19 98.0 3.8 79 3-95 117-196 (218)
5 TIGR00740 methyltransferase, p 99.0 1.6E-09 3.5E-14 73.6 7.5 85 5-94 120-221 (239)
6 PTZ00098 phosphoethanolamine N 98.8 7.8E-08 1.7E-12 66.6 8.9 84 4-95 112-197 (263)
7 PLN02233 ubiquinone biosynthes 98.6 1.8E-07 3.8E-12 64.8 7.8 84 8-95 146-243 (261)
8 PRK15451 tRNA cmo(5)U34 methyl 98.6 1.6E-07 3.4E-12 64.4 7.4 90 5-94 123-224 (247)
9 PRK11873 arsM arsenite S-adeno 98.6 3.2E-07 7E-12 63.4 9.0 79 8-95 147-225 (272)
10 PF13489 Methyltransf_23: Meth 98.6 9.7E-08 2.1E-12 60.3 5.6 80 8-95 79-158 (161)
11 PLN02232 ubiquinone biosynthes 98.6 2.2E-07 4.8E-12 60.0 6.7 82 8-94 45-141 (160)
12 PLN02336 phosphoethanolamine N 98.5 1.5E-06 3.3E-11 64.4 8.9 81 4-95 327-409 (475)
13 PLN02490 MPBQ/MSBQ methyltrans 98.4 1.2E-06 2.6E-11 63.0 7.0 73 8-95 179-251 (340)
14 PF01209 Ubie_methyltran: ubiE 98.4 2E-07 4.4E-12 63.7 2.6 85 5-94 112-214 (233)
15 PRK15068 tRNA mo(5)U34 methylt 98.4 2.4E-06 5.1E-11 61.0 8.0 78 8-95 190-269 (322)
16 PLN02336 phosphoethanolamine N 98.4 1.9E-06 4.1E-11 63.9 7.5 74 8-95 104-177 (475)
17 PF06080 DUF938: Protein of un 98.3 4.1E-06 9E-11 56.4 8.1 85 8-95 103-187 (204)
18 PRK00216 ubiE ubiquinone/menaq 98.3 3.9E-06 8.4E-11 56.2 7.4 83 8-95 122-220 (239)
19 PLN02244 tocopherol O-methyltr 98.3 7.8E-06 1.7E-10 58.6 9.2 85 8-95 187-273 (340)
20 TIGR00452 methyltransferase, p 98.3 4.5E-06 9.7E-11 59.5 7.4 78 8-95 189-268 (314)
21 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 6.8E-06 1.5E-10 54.5 7.7 80 8-95 107-205 (223)
22 COG2226 UbiE Methylase involve 98.2 3.7E-06 8.1E-11 57.8 6.2 48 4-53 114-163 (238)
23 PRK14103 trans-aconitate 2-met 98.2 1.2E-05 2.6E-10 55.2 7.4 86 8-95 90-179 (255)
24 TIGR02752 MenG_heptapren 2-hep 98.1 1E-05 2.3E-10 54.4 6.5 83 8-95 115-213 (231)
25 PRK08317 hypothetical protein; 98.1 2.1E-05 4.5E-10 52.4 7.9 83 8-95 88-171 (241)
26 smart00828 PKS_MT Methyltransf 98.1 1.6E-05 3.5E-10 53.3 7.2 72 8-95 68-139 (224)
27 PLN02396 hexaprenyldihydroxybe 98.1 8.2E-06 1.8E-10 58.3 5.5 83 8-95 199-284 (322)
28 PF08241 Methyltransf_11: Meth 97.9 7.7E-06 1.7E-10 47.0 2.8 39 4-44 55-95 (95)
29 PRK11036 putative S-adenosyl-L 97.9 1.7E-05 3.7E-10 54.4 4.8 84 8-95 113-202 (255)
30 KOG1540 Ubiquinone biosynthesi 97.9 8.9E-05 1.9E-09 51.7 7.9 89 4-95 172-276 (296)
31 smart00138 MeTrc Methyltransfe 97.9 2.4E-05 5.2E-10 54.4 4.7 39 8-46 204-242 (264)
32 PRK11207 tellurite resistance 97.8 7.7E-05 1.7E-09 49.6 6.0 44 8-51 96-139 (197)
33 PRK05134 bifunctional 3-demeth 97.8 8.7E-05 1.9E-09 50.0 6.2 84 8-95 115-200 (233)
34 TIGR00477 tehB tellurite resis 97.8 9.4E-05 2E-09 49.1 5.8 43 8-50 95-137 (195)
35 PRK06922 hypothetical protein; 97.7 6.4E-05 1.4E-09 58.2 5.2 46 8-53 488-544 (677)
36 TIGR01983 UbiG ubiquinone bios 97.7 0.00011 2.3E-09 49.2 5.6 80 8-95 113-198 (224)
37 PRK10611 chemotaxis methyltran 97.7 7.1E-05 1.5E-09 52.8 4.3 39 8-46 224-262 (287)
38 KOG2361 Predicted methyltransf 97.6 0.00017 3.7E-09 49.9 5.5 85 9-95 146-232 (264)
39 PF04672 Methyltransf_19: S-ad 97.6 8E-05 1.7E-09 52.1 3.6 77 10-94 153-230 (267)
40 PF01739 CheR: CheR methyltran 97.5 6.1E-05 1.3E-09 50.4 2.4 39 8-46 137-175 (196)
41 PRK06202 hypothetical protein; 97.5 0.00034 7.3E-09 47.3 5.9 79 8-96 130-218 (232)
42 PF13847 Methyltransf_31: Meth 97.5 6.5E-05 1.4E-09 47.6 1.8 79 7-92 73-152 (152)
43 PF08242 Methyltransf_12: Meth 97.4 0.00014 3E-09 42.8 2.3 34 7-42 66-99 (99)
44 PF02353 CMAS: Mycolic acid cy 97.4 0.00044 9.5E-09 48.4 5.1 84 8-95 128-212 (273)
45 PF12847 Methyltransf_18: Meth 97.4 0.00038 8.2E-09 41.4 4.2 40 7-46 70-111 (112)
46 PRK01683 trans-aconitate 2-met 97.3 0.0025 5.4E-08 43.6 7.8 83 8-95 94-182 (258)
47 PF05401 NodS: Nodulation prot 97.2 0.00033 7.2E-09 47.1 3.1 40 8-47 107-147 (201)
48 COG1352 CheR Methylase of chem 97.2 0.00075 1.6E-08 47.3 5.0 42 5-46 199-241 (268)
49 TIGR02072 BioC biotin biosynth 97.2 0.0028 6.1E-08 42.2 7.4 72 8-94 99-170 (240)
50 PRK12335 tellurite resistance 97.1 0.0011 2.4E-08 46.4 5.2 43 8-50 185-227 (287)
51 PRK07580 Mg-protoporphyrin IX 97.1 0.003 6.6E-08 42.2 7.1 77 8-95 128-209 (230)
52 PLN03075 nicotianamine synthas 97.1 0.00063 1.4E-08 48.3 3.8 38 8-46 196-233 (296)
53 PF12147 Methyltransf_20: Puta 97.1 0.0043 9.4E-08 44.1 7.9 79 6-94 208-292 (311)
54 TIGR03438 probable methyltrans 97.1 0.0013 2.7E-08 46.5 4.9 36 9-44 140-175 (301)
55 PLN02585 magnesium protoporphy 97.0 0.0021 4.7E-08 45.9 5.9 79 8-95 213-294 (315)
56 KOG4300 Predicted methyltransf 97.0 0.0025 5.5E-08 43.5 5.8 79 9-93 147-225 (252)
57 COG2227 UbiG 2-polyprenyl-3-me 97.0 0.00072 1.6E-08 46.6 3.1 88 7-96 124-211 (243)
58 PRK11705 cyclopropane fatty ac 96.9 0.0042 9.1E-08 45.4 6.5 79 8-95 229-307 (383)
59 PRK04266 fibrillarin; Provisio 96.9 0.002 4.3E-08 44.0 4.4 32 9-45 143-175 (226)
60 PRK10258 biotin biosynthesis p 96.8 0.0071 1.5E-07 41.2 6.9 78 8-94 104-181 (251)
61 PF13649 Methyltransf_25: Meth 96.8 0.00097 2.1E-08 39.4 2.2 33 8-40 68-101 (101)
62 TIGR02021 BchM-ChlM magnesium 96.8 0.005 1.1E-07 41.2 5.7 81 8-96 120-202 (219)
63 COG2230 Cfa Cyclopropane fatty 96.7 0.0085 1.8E-07 42.4 6.9 81 8-95 138-218 (283)
64 TIGR03587 Pse_Me-ase pseudamin 96.6 0.0099 2.2E-07 39.8 5.9 47 3-51 99-147 (204)
65 cd02440 AdoMet_MTases S-adenos 96.4 0.012 2.7E-07 33.0 4.9 38 7-45 66-103 (107)
66 KOG1270 Methyltransferases [Co 96.3 0.0073 1.6E-07 42.4 4.4 84 7-96 158-245 (282)
67 PF11968 DUF3321: Putative met 96.2 0.032 6.9E-07 38.1 6.7 73 1-95 92-176 (219)
68 TIGR03840 TMPT_Se_Te thiopurin 96.0 0.024 5.3E-07 38.3 5.7 43 8-50 114-156 (213)
69 TIGR03439 methyl_EasF probable 96.0 0.015 3.1E-07 41.8 4.8 41 9-49 159-201 (319)
70 PRK13255 thiopurine S-methyltr 95.8 0.041 8.9E-07 37.3 5.9 43 8-50 117-159 (218)
71 PF08003 Methyltransf_9: Prote 95.8 0.039 8.4E-07 39.6 5.9 76 9-94 184-261 (315)
72 KOG2899 Predicted methyltransf 95.6 0.027 6E-07 39.3 4.7 80 5-92 164-247 (288)
73 PF06859 Bin3: Bicoid-interact 95.6 0.0045 9.8E-08 37.9 0.6 36 9-44 3-42 (110)
74 COG4627 Uncharacterized protei 95.4 0.0069 1.5E-07 39.6 1.1 39 8-46 48-86 (185)
75 PF03848 TehB: Tellurite resis 95.3 0.025 5.5E-07 37.9 3.6 44 5-48 91-135 (192)
76 PRK13256 thiopurine S-methyltr 95.1 0.12 2.6E-06 35.5 6.5 44 8-51 125-168 (226)
77 PRK05785 hypothetical protein; 94.5 0.11 2.4E-06 35.3 5.0 40 8-51 111-150 (226)
78 PRK15001 SAM-dependent 23S rib 94.3 0.15 3.2E-06 37.5 5.6 39 8-46 299-340 (378)
79 PRK09489 rsmC 16S ribosomal RN 94.1 0.16 3.5E-06 36.7 5.5 40 8-47 262-304 (342)
80 TIGR00537 hemK_rel_arch HemK-r 94.1 0.18 4E-06 32.6 5.2 43 8-50 83-144 (179)
81 TIGR02081 metW methionine bios 94.0 0.22 4.7E-06 32.7 5.5 78 8-95 76-162 (194)
82 TIGR03534 RF_mod_PrmC protein- 93.9 0.28 6E-06 33.1 6.1 20 26-45 197-216 (251)
83 TIGR00027 mthyl_TIGR00027 meth 93.5 0.81 1.8E-05 31.8 7.9 82 9-95 160-245 (260)
84 COG4798 Predicted methyltransf 93.5 0.36 7.8E-06 32.9 5.8 60 21-95 141-200 (238)
85 PF11899 DUF3419: Protein of u 93.4 0.13 2.7E-06 37.9 3.9 43 9-51 297-339 (380)
86 COG5459 Predicted rRNA methyla 93.2 0.083 1.8E-06 39.0 2.6 47 4-50 179-229 (484)
87 PF05219 DREV: DREV methyltran 93.0 0.2 4.3E-06 35.2 4.2 37 8-46 152-188 (265)
88 TIGR02469 CbiT precorrin-6Y C5 92.8 0.19 4.2E-06 29.8 3.5 33 8-45 89-121 (124)
89 KOG1975 mRNA cap methyltransfe 92.5 0.28 6.1E-06 35.8 4.5 38 6-43 195-234 (389)
90 PF03291 Pox_MCEL: mRNA cappin 92.5 0.12 2.6E-06 37.3 2.6 37 9-45 147-185 (331)
91 PF05148 Methyltransf_8: Hypot 91.9 0.21 4.6E-06 34.1 3.2 42 4-48 117-160 (219)
92 PF09243 Rsm22: Mitochondrial 91.5 0.44 9.6E-06 33.3 4.6 46 4-51 99-144 (274)
93 TIGR00138 gidB 16S rRNA methyl 91.1 0.3 6.6E-06 32.1 3.2 34 7-46 109-142 (181)
94 PRK08287 cobalt-precorrin-6Y C 90.5 0.5 1.1E-05 30.8 3.8 35 8-47 98-132 (187)
95 PRK14968 putative methyltransf 90.2 1.4 3.1E-05 28.1 5.8 22 25-46 127-148 (188)
96 COG4301 Uncharacterized conser 89.9 0.77 1.7E-05 32.5 4.5 42 9-50 156-198 (321)
97 PRK00377 cbiT cobalt-precorrin 89.9 0.76 1.6E-05 30.3 4.3 32 8-44 112-143 (198)
98 COG3315 O-Methyltransferase in 89.3 1.8 4E-05 30.8 6.1 39 9-47 172-210 (297)
99 PRK11188 rrmJ 23S rRNA methylt 89.2 1.3 2.8E-05 29.7 5.1 40 8-47 118-166 (209)
100 KOG3987 Uncharacterized conser 89.0 0.86 1.9E-05 31.5 4.1 81 9-95 171-255 (288)
101 PTZ00146 fibrillarin; Provisio 88.8 2.2 4.8E-05 30.5 6.2 35 7-45 202-236 (293)
102 PF05175 MTS: Methyltransferas 88.7 1 2.2E-05 29.0 4.2 46 2-47 91-141 (170)
103 PRK00121 trmB tRNA (guanine-N( 88.5 0.74 1.6E-05 30.6 3.5 22 25-46 135-156 (202)
104 PRK00107 gidB 16S rRNA methylt 88.5 0.97 2.1E-05 29.9 4.1 34 8-47 113-146 (187)
105 PF01234 NNMT_PNMT_TEMT: NNMT/ 87.6 0.42 9.2E-06 33.4 2.0 77 5-95 155-234 (256)
106 TIGR00091 tRNA (guanine-N(7)-) 87.2 0.61 1.3E-05 30.7 2.5 21 26-46 112-132 (194)
107 PRK00517 prmA ribosomal protei 84.5 1.9 4E-05 29.6 3.9 38 8-50 180-217 (250)
108 PRK09328 N5-glutamine S-adenos 84.1 3 6.5E-05 28.5 4.8 20 25-44 217-236 (275)
109 KOG3045 Predicted RNA methylas 83.0 3.2 6.9E-05 29.7 4.5 37 8-47 229-265 (325)
110 PRK13944 protein-L-isoaspartat 82.9 1.6 3.5E-05 29.0 3.0 30 8-45 143-172 (205)
111 cd01842 SGNH_hydrolase_like_5 82.9 3.1 6.6E-05 27.8 4.2 41 9-50 52-102 (183)
112 TIGR00417 speE spermidine synt 82.8 2.5 5.4E-05 29.3 4.1 38 8-45 146-185 (270)
113 TIGR00438 rrmJ cell division p 82.7 2 4.4E-05 27.9 3.4 21 25-45 125-145 (188)
114 TIGR00006 S-adenosyl-methyltra 82.4 2.1 4.5E-05 30.7 3.6 29 24-52 218-246 (305)
115 PF03141 Methyltransf_29: Puta 82.1 0.83 1.8E-05 34.9 1.5 46 4-50 176-223 (506)
116 COG0500 SmtA SAM-dependent met 82.0 4.4 9.5E-05 23.3 4.5 41 8-51 120-160 (257)
117 PF05724 TPMT: Thiopurine S-me 81.9 2.1 4.4E-05 29.1 3.3 38 8-45 117-154 (218)
118 PRK13942 protein-L-isoaspartat 81.0 2.9 6.4E-05 27.9 3.8 31 8-46 146-176 (212)
119 PRK00050 16S rRNA m(4)C1402 me 80.1 2.8 6.1E-05 29.9 3.6 30 23-52 213-242 (296)
120 PRK07402 precorrin-6B methylas 80.0 2.9 6.2E-05 27.4 3.4 26 24-49 120-145 (196)
121 PRK14121 tRNA (guanine-N(7)-)- 79.8 3.5 7.6E-05 30.6 4.1 21 26-46 215-235 (390)
122 TIGR00406 prmA ribosomal prote 79.6 3.7 8E-05 28.8 4.0 37 8-49 226-262 (288)
123 COG0275 Predicted S-adenosylme 79.3 3.2 7E-05 29.9 3.6 29 24-52 222-250 (314)
124 COG4106 Tam Trans-aconitate me 78.1 2.9 6.3E-05 29.1 3.0 80 7-95 92-181 (257)
125 PRK11088 rrmA 23S rRNA methylt 78.1 2.8 6.2E-05 29.0 3.1 19 28-46 163-181 (272)
126 KOG1331 Predicted methyltransf 78.0 3.3 7.1E-05 29.6 3.3 39 8-46 104-143 (293)
127 PF08123 DOT1: Histone methyla 77.1 5 0.00011 27.0 3.9 45 6-53 121-165 (205)
128 PRK00312 pcm protein-L-isoaspa 76.7 5.6 0.00012 26.3 4.1 32 8-47 145-176 (212)
129 PRK00811 spermidine synthase; 76.0 6.7 0.00015 27.5 4.5 38 8-45 151-190 (283)
130 PRK04457 spermidine synthase; 76.0 3.3 7.2E-05 28.7 2.9 37 8-45 137-176 (262)
131 PF10017 Methyltransf_33: Hist 75.5 2.2 4.7E-05 26.5 1.7 21 75-95 92-112 (127)
132 PRK14967 putative methyltransf 74.9 5.8 0.00013 26.6 3.8 25 25-49 138-162 (223)
133 TIGR00446 nop2p NOL1/NOP2/sun 74.7 6.1 0.00013 27.4 4.0 33 19-51 165-204 (264)
134 COG2242 CobL Precorrin-6B meth 74.5 3.7 8.1E-05 27.5 2.7 41 4-50 99-139 (187)
135 PF01795 Methyltransf_5: MraW 74.0 2.4 5.2E-05 30.5 1.8 28 23-50 218-245 (310)
136 TIGR01177 conserved hypothetic 73.7 8.7 0.00019 27.4 4.7 24 23-46 271-294 (329)
137 TIGR00563 rsmB ribosomal RNA s 73.3 4.6 0.0001 29.9 3.3 28 26-53 348-375 (426)
138 TIGR00080 pimt protein-L-isoas 72.8 5.2 0.00011 26.6 3.2 30 8-45 147-176 (215)
139 KOG3010 Methyltransferase [Gen 72.7 4.2 9.2E-05 28.5 2.7 37 9-48 102-139 (261)
140 COG2519 GCD14 tRNA(1-methylade 72.2 4.8 0.0001 28.3 2.9 33 16-50 167-199 (256)
141 PRK11933 yebU rRNA (cytosine-C 72.1 5.3 0.00012 30.3 3.4 31 17-48 206-243 (470)
142 COG2813 RsmC 16S RNA G1207 met 71.9 6.2 0.00014 28.3 3.5 29 19-47 239-267 (300)
143 PRK01581 speE spermidine synth 71.6 4.3 9.3E-05 30.0 2.7 21 25-45 247-267 (374)
144 PF13659 Methyltransf_26: Meth 70.7 2.8 6E-05 24.7 1.3 38 8-45 71-114 (117)
145 PRK14901 16S rRNA methyltransf 69.6 5.2 0.00011 29.7 2.9 27 26-52 364-390 (434)
146 TIGR03438 probable methyltrans 69.4 3.8 8.2E-05 28.9 2.0 21 75-95 265-285 (301)
147 PF11312 DUF3115: Protein of u 68.7 7.3 0.00016 28.2 3.3 26 22-47 218-243 (315)
148 PRK14904 16S rRNA methyltransf 68.7 7.9 0.00017 28.9 3.6 26 27-52 358-383 (445)
149 KOG2198 tRNA cytosine-5-methyl 67.6 5.7 0.00012 29.4 2.6 28 26-53 276-303 (375)
150 cd04911 ACT_AKiii-YclM-BS_1 AC 66.8 11 0.00023 21.6 3.1 37 2-40 32-71 (76)
151 COG3963 Phospholipid N-methylt 66.6 28 0.0006 23.4 5.4 42 7-48 117-158 (194)
152 PLN02366 spermidine synthase 66.0 7.2 0.00016 27.9 2.9 21 25-45 185-205 (308)
153 PRK03612 spermidine synthase; 65.6 6 0.00013 30.3 2.5 20 26-45 395-414 (521)
154 PF02636 Methyltransf_28: Puta 65.2 11 0.00023 25.8 3.5 28 23-50 171-198 (252)
155 PF09382 RQC: RQC domain; Int 65.0 5.7 0.00012 23.3 1.9 62 23-90 4-65 (106)
156 PRK10901 16S rRNA methyltransf 64.4 9.5 0.00021 28.3 3.3 26 26-51 352-377 (427)
157 PF05772 NinB: NinB protein; 64.3 27 0.00059 21.9 4.9 25 66-91 49-73 (127)
158 PRK11805 N5-glutamine S-adenos 63.8 11 0.00023 26.9 3.4 21 24-44 241-261 (307)
159 TIGR03533 L3_gln_methyl protei 62.8 12 0.00025 26.3 3.4 22 25-47 230-251 (284)
160 PRK14902 16S rRNA methyltransf 61.1 14 0.00029 27.6 3.7 24 26-49 359-382 (444)
161 PRK14903 16S rRNA methyltransf 60.0 12 0.00026 28.0 3.2 27 26-52 346-372 (431)
162 PF08468 MTS_N: Methyltransfer 59.6 17 0.00037 23.4 3.5 30 22-51 81-110 (155)
163 TIGR03439 methyl_EasF probable 59.2 6.9 0.00015 28.2 1.8 22 75-96 284-305 (319)
164 PRK08558 adenine phosphoribosy 58.2 9.8 0.00021 26.2 2.3 20 34-53 171-190 (238)
165 PRK15001 SAM-dependent 23S rib 58.1 33 0.00072 25.4 5.2 45 3-50 101-146 (378)
166 PF13592 HTH_33: Winged helix- 57.9 10 0.00023 20.2 2.0 22 75-96 18-39 (60)
167 KOG2539 Mitochondrial/chloropl 57.8 19 0.00042 27.6 3.9 43 8-50 275-319 (491)
168 PF07021 MetW: Methionine bios 57.6 22 0.00047 24.0 3.8 80 4-95 70-162 (193)
169 cd01093 CRIB_PAK_like PAK (p21 57.0 10 0.00022 19.3 1.7 18 77-94 24-41 (46)
170 PF03141 Methyltransf_29: Puta 56.7 12 0.00027 28.8 2.8 45 2-47 421-468 (506)
171 PF10294 Methyltransf_16: Puta 56.6 19 0.00042 23.2 3.4 40 8-49 120-159 (173)
172 PRK10858 nitrogen regulatory p 56.4 26 0.00056 21.3 3.8 27 21-47 66-96 (112)
173 PRK11524 putative methyltransf 55.9 17 0.00037 25.4 3.3 20 26-45 60-79 (284)
174 TIGR03704 PrmC_rel_meth putati 55.6 21 0.00046 24.5 3.7 20 26-45 196-215 (251)
175 PF12419 DUF3670: SNF2 Helicas 55.5 16 0.00034 23.0 2.8 74 19-93 10-98 (141)
176 PF10281 Ish1: Putative stress 53.0 21 0.00046 17.2 2.5 18 78-95 3-20 (38)
177 PF06962 rRNA_methylase: Putat 52.9 12 0.00026 23.9 1.9 31 22-52 68-98 (140)
178 TIGR00536 hemK_fam HemK family 52.2 23 0.00049 24.7 3.4 23 24-47 222-244 (284)
179 PF01555 N6_N4_Mtase: DNA meth 52.0 12 0.00025 24.4 1.8 21 25-45 35-55 (231)
180 PF13578 Methyltransf_24: Meth 51.6 10 0.00023 22.0 1.4 24 23-46 82-105 (106)
181 PF13137 DUF3983: Protein of u 51.5 7.2 0.00016 18.8 0.6 17 77-93 18-34 (34)
182 PF14258 DUF4350: Domain of un 51.4 36 0.00079 18.3 3.6 23 19-45 46-69 (70)
183 PLN02781 Probable caffeoyl-CoA 51.1 32 0.0007 23.4 4.0 36 8-49 145-180 (234)
184 PRK09902 hypothetical protein; 50.2 18 0.00039 24.8 2.6 74 14-89 119-211 (216)
185 PRK10665 nitrogen regulatory p 49.7 38 0.00082 20.6 3.7 28 20-47 65-96 (112)
186 COG0144 Sun tRNA and rRNA cyto 49.5 19 0.0004 26.3 2.7 35 16-50 251-292 (355)
187 PF14117 DUF4287: Domain of un 48.5 22 0.00048 19.4 2.3 15 78-92 14-28 (61)
188 PF09822 ABC_transp_aux: ABC-t 48.4 40 0.00087 23.2 4.2 41 3-47 192-233 (271)
189 PRK09489 rsmC 16S ribosomal RN 48.1 35 0.00075 24.8 3.9 29 23-51 89-117 (342)
190 PF08845 SymE_toxin: Toxin Sym 47.8 11 0.00023 20.3 1.0 10 86-95 31-40 (57)
191 PF00543 P-II: Nitrogen regula 47.0 22 0.00047 20.9 2.3 28 20-47 62-93 (102)
192 PF06557 DUF1122: Protein of u 46.9 30 0.00064 22.9 3.1 29 21-50 61-89 (170)
193 PF03269 DUF268: Caenorhabditi 46.3 37 0.00081 22.5 3.5 27 26-52 91-117 (177)
194 PRK06402 rpl12p 50S ribosomal 45.7 24 0.00052 21.5 2.4 22 74-95 12-33 (106)
195 PRK13587 1-(5-phosphoribosyl)- 45.6 54 0.0012 22.4 4.4 70 17-93 139-215 (234)
196 PRK06852 aldolase; Validated 45.5 22 0.00048 25.6 2.5 31 16-46 7-37 (304)
197 PRK13699 putative methylase; P 44.8 35 0.00076 23.2 3.4 23 23-45 49-71 (227)
198 cd05831 Ribosomal_P1 Ribosomal 44.6 30 0.00065 20.8 2.7 23 73-95 12-34 (103)
199 KOG1269 SAM-dependent methyltr 44.3 27 0.00059 25.7 2.9 42 9-52 180-221 (364)
200 TIGR02764 spore_ybaN_pdaB poly 44.2 28 0.0006 22.6 2.7 31 16-46 129-159 (191)
201 cd03238 ABC_UvrA The excision 43.9 79 0.0017 20.6 4.8 41 8-48 108-148 (176)
202 PF05763 DUF835: Protein of un 43.8 43 0.00093 21.1 3.4 81 9-89 42-133 (136)
203 PF01316 Arg_repressor: Argini 43.8 24 0.00053 19.7 2.1 21 75-95 16-36 (70)
204 PF00919 UPF0004: Uncharacteri 43.8 68 0.0015 18.9 4.3 47 7-53 36-83 (98)
205 PRK14702 insertion element IS2 43.4 22 0.00048 24.6 2.3 24 72-95 157-180 (262)
206 PRK01033 imidazole glycerol ph 42.2 55 0.0012 22.6 4.0 19 75-93 202-220 (258)
207 KOG1661 Protein-L-isoaspartate 41.8 27 0.00059 24.2 2.4 21 25-45 172-192 (237)
208 cd04411 Ribosomal_P1_P2_L12p R 41.8 37 0.00081 20.5 2.8 21 75-95 13-33 (105)
209 PF03059 NAS: Nicotianamine sy 41.4 36 0.00079 24.1 3.1 37 8-45 193-229 (276)
210 COG1236 YSH1 Predicted exonucl 41.3 65 0.0014 24.1 4.6 45 6-50 178-227 (427)
211 PF13344 Hydrolase_6: Haloacid 41.2 31 0.00067 20.3 2.4 24 71-95 35-58 (101)
212 PF01189 Nol1_Nop2_Fmu: NOL1/N 41.1 12 0.00026 26.4 0.6 22 26-47 195-220 (283)
213 KOG3451 Uncharacterized conser 41.0 27 0.00059 19.6 1.9 26 22-47 13-38 (71)
214 cd03413 CbiK_C Anaerobic cobal 40.5 18 0.00039 21.6 1.3 15 81-95 81-95 (103)
215 PF07685 GATase_3: CobB/CobQ-l 40.5 20 0.00044 22.8 1.6 39 4-42 3-45 (158)
216 TIGR03685 L21P_arch 50S riboso 40.0 40 0.00088 20.4 2.7 22 74-95 12-33 (105)
217 PLN02823 spermine synthase 39.7 34 0.00073 24.9 2.8 20 26-45 199-219 (336)
218 COG5443 FlbT Flagellar biosynt 39.6 35 0.00077 21.7 2.5 28 62-89 56-83 (148)
219 PF12646 DUF3783: Domain of un 39.5 38 0.00083 18.0 2.4 20 16-35 5-24 (58)
220 COG0421 SpeE Spermidine syntha 39.5 29 0.00063 24.6 2.4 20 26-45 170-189 (282)
221 PRK00536 speE spermidine synth 39.2 38 0.00082 23.8 2.9 31 8-45 140-170 (262)
222 PF09827 CRISPR_Cas2: CRISPR a 38.9 69 0.0015 17.6 4.2 30 19-48 38-68 (78)
223 PF05924 SAMP: SAMP Motif; In 38.7 32 0.00069 14.6 1.5 12 27-38 4-16 (20)
224 PRK15450 signal transduction p 38.7 22 0.00048 20.6 1.4 18 75-92 68-85 (85)
225 cd05832 Ribosomal_L12p Ribosom 38.5 43 0.00094 20.4 2.7 21 75-95 13-33 (106)
226 PF10354 DUF2431: Domain of un 38.0 46 0.00099 21.6 3.0 22 26-47 105-126 (166)
227 PF12101 DUF3577: Protein of u 37.6 52 0.0011 21.0 3.0 27 22-48 60-86 (137)
228 PF07942 N2227: N2227-like pro 37.2 1.5E+02 0.0033 21.0 5.7 71 9-95 167-237 (270)
229 smart00874 B5 tRNA synthetase 37.1 32 0.0007 18.5 1.9 21 75-95 15-35 (71)
230 COG4822 CbiK Cobalamin biosynt 37.0 24 0.00051 24.6 1.5 17 79-95 216-232 (265)
231 PRK09213 pur operon repressor; 36.8 34 0.00074 24.2 2.3 21 34-54 191-211 (271)
232 PRK04280 arginine repressor; P 36.5 32 0.0007 22.0 2.0 21 75-95 15-35 (148)
233 COG5379 BtaA S-adenosylmethion 36.0 79 0.0017 23.3 4.1 38 8-45 328-365 (414)
234 PLN02476 O-methyltransferase 36.0 83 0.0018 22.3 4.2 31 19-50 201-231 (278)
235 PF03574 Peptidase_S48: Peptid 35.9 37 0.00081 21.4 2.2 28 15-42 12-39 (149)
236 PF10237 N6-adenineMlase: Prob 35.9 84 0.0018 20.4 3.9 27 20-46 7-33 (162)
237 TIGR02873 spore_ylxY probable 35.9 38 0.00083 23.7 2.5 32 16-47 208-239 (268)
238 PRK13943 protein-L-isoaspartat 35.7 36 0.00079 24.5 2.4 31 8-46 150-180 (322)
239 cd00368 Molybdopterin-Binding 35.6 31 0.00067 24.5 2.1 40 7-51 156-197 (374)
240 COG4123 Predicted O-methyltran 35.3 38 0.00082 23.7 2.4 29 18-46 142-170 (248)
241 COG4122 Predicted O-methyltran 34.9 61 0.0013 22.2 3.3 32 19-50 139-170 (219)
242 PRK01544 bifunctional N5-gluta 34.6 45 0.00098 25.5 2.9 20 25-44 248-267 (506)
243 COG0503 Apt Adenine/guanine ph 34.5 39 0.00084 22.2 2.2 25 29-53 106-130 (179)
244 cd02759 MopB_Acetylene-hydrata 34.0 61 0.0013 24.3 3.5 43 6-52 159-203 (477)
245 COG3019 Predicted metal-bindin 33.7 23 0.0005 22.8 1.0 15 82-96 40-54 (149)
246 PRK09219 xanthine phosphoribos 33.7 28 0.0006 23.2 1.4 20 34-53 112-131 (189)
247 TIGR03675 arCOG00543 arCOG0054 33.7 1.1E+02 0.0024 24.2 4.9 42 5-46 362-409 (630)
248 PF01436 NHL: NHL repeat; Int 33.5 26 0.00057 15.5 1.0 11 37-47 10-20 (28)
249 PF12780 AAA_8: P-loop contain 33.4 1.1E+02 0.0023 21.5 4.4 68 24-94 15-87 (268)
250 PF02479 Herpes_IE68: Herpesvi 33.3 54 0.0012 20.8 2.6 29 62-92 62-90 (132)
251 COG1245 Predicted ATPase, RNas 33.2 1.2E+02 0.0025 23.8 4.8 41 7-47 231-271 (591)
252 cd08283 FDH_like_1 Glutathione 32.7 59 0.0013 23.4 3.2 29 17-47 279-307 (386)
253 CHL00123 rps6 ribosomal protei 32.6 88 0.0019 18.4 3.4 30 19-48 17-47 (97)
254 PRK05066 arginine repressor; P 32.3 43 0.00093 21.7 2.1 21 75-95 20-41 (156)
255 PF08671 SinI: Anti-repressor 32.2 42 0.00091 15.6 1.5 10 82-91 3-12 (30)
256 PHA02517 putative transposase 32.2 42 0.00092 23.0 2.2 23 73-95 175-197 (277)
257 PRK11057 ATP-dependent DNA hel 32.2 2.1E+02 0.0046 22.4 6.2 62 23-90 414-475 (607)
258 smart00463 SMR Small MutS-rela 32.0 60 0.0013 17.9 2.5 24 17-40 6-29 (80)
259 KOG1712 Adenine phosphoribosyl 31.8 34 0.00074 22.7 1.6 42 8-54 96-137 (183)
260 PF07862 Nif11: Nitrogen fixat 31.8 63 0.0014 16.2 2.4 18 78-95 26-43 (49)
261 PF02390 Methyltransf_4: Putat 31.5 28 0.0006 23.1 1.2 20 26-45 113-132 (195)
262 PF00107 ADH_zinc_N: Zinc-bind 31.2 29 0.00063 20.5 1.2 24 26-49 69-92 (130)
263 PF08704 GCD14: tRNA methyltra 31.2 16 0.00034 25.5 -0.1 32 17-50 118-150 (247)
264 COG2058 RPP1A Ribosomal protei 30.9 78 0.0017 19.4 2.9 21 75-95 13-33 (109)
265 COG0347 GlnK Nitrogen regulato 30.8 1E+02 0.0022 19.0 3.5 28 20-47 65-96 (112)
266 PF03492 Methyltransf_7: SAM d 30.5 1.4E+02 0.0029 21.6 4.6 67 26-92 163-244 (334)
267 KOG2352 Predicted spermine/spe 30.2 81 0.0018 24.3 3.5 44 9-52 116-169 (482)
268 PLN02446 (5-phosphoribosyl)-5- 30.2 1.2E+02 0.0025 21.5 4.1 77 14-90 151-228 (262)
269 PF14740 DUF4471: Domain of un 30.2 54 0.0012 23.5 2.5 30 9-47 224-254 (289)
270 PF06283 ThuA: Trehalose utili 30.0 1.2E+02 0.0025 20.1 4.0 37 6-46 51-88 (217)
271 COG0107 HisF Imidazoleglycerol 29.9 1.3E+02 0.0028 21.2 4.2 50 41-90 46-95 (256)
272 COG2264 PrmA Ribosomal protein 29.9 88 0.0019 22.6 3.5 29 22-50 239-267 (300)
273 PF01887 SAM_adeno_trans: S-ad 29.8 1.8E+02 0.0039 20.3 5.0 48 5-52 26-74 (258)
274 PF00786 PBD: P21-Rho-binding 29.7 42 0.0009 17.9 1.5 17 78-94 24-40 (59)
275 PF11830 DUF3350: Domain of un 29.7 59 0.0013 17.5 2.0 17 75-91 22-38 (56)
276 COG0285 FolC Folylpolyglutamat 29.7 40 0.00086 25.5 1.8 24 71-95 50-73 (427)
277 PRK06132 hypothetical protein; 29.6 58 0.0013 24.1 2.6 24 26-49 321-344 (359)
278 PRK09409 IS2 transposase TnpB; 29.6 43 0.00092 23.8 1.9 24 72-95 196-219 (301)
279 TIGR00007 phosphoribosylformim 29.5 1.5E+02 0.0032 19.7 4.5 18 75-93 195-212 (230)
280 cd05833 Ribosomal_P2 Ribosomal 29.4 68 0.0015 19.5 2.5 21 75-95 13-34 (109)
281 COG2813 RsmC 16S RNA G1207 met 29.4 1E+02 0.0022 22.3 3.8 39 8-49 38-76 (300)
282 PF00977 His_biosynth: Histidi 29.3 36 0.00078 23.1 1.5 72 16-93 137-214 (229)
283 TIGR01743 purR_Bsub pur operon 29.3 50 0.0011 23.3 2.2 20 34-53 189-208 (268)
284 KOG1136 Predicted cleavage and 29.2 54 0.0012 24.5 2.4 34 17-50 210-243 (501)
285 PF06200 tify: tify domain; I 29.1 55 0.0012 15.9 1.7 17 15-31 17-33 (36)
286 PRK08366 vorA 2-ketoisovalerat 29.0 1.4E+02 0.003 22.2 4.5 69 16-92 295-371 (390)
287 PF01564 Spermine_synth: Sperm 28.9 31 0.00067 23.7 1.1 21 26-46 171-191 (246)
288 PF06897 DUF1269: Protein of u 28.8 91 0.002 18.7 3.0 21 27-47 43-63 (102)
289 COG2518 Pcm Protein-L-isoaspar 28.8 54 0.0012 22.4 2.2 32 8-47 139-170 (209)
290 TIGR01919 hisA-trpF 1-(5-phosp 28.2 1.9E+02 0.0042 19.8 4.9 54 40-93 164-219 (243)
291 TIGR03853 matur_matur probable 28.1 78 0.0017 18.2 2.5 21 67-89 8-28 (77)
292 PF15603 Imm45: Immunity prote 28.0 1.3E+02 0.0028 17.4 3.4 39 8-46 35-82 (82)
293 PF07090 DUF1355: Protein of u 27.9 36 0.00079 22.5 1.2 39 5-46 65-108 (177)
294 PF05706 CDKN3: Cyclin-depende 27.7 65 0.0014 21.3 2.4 24 23-46 117-140 (168)
295 PRK13605 endoribonuclease SymE 27.7 33 0.00072 21.2 0.9 10 86-95 45-54 (113)
296 PF03484 B5: tRNA synthetase B 27.4 39 0.00085 18.4 1.2 20 76-95 16-35 (70)
297 COG2453 CDC14 Predicted protei 27.4 1.2E+02 0.0025 19.7 3.6 25 23-47 89-113 (180)
298 PF13580 SIS_2: SIS domain; PD 27.2 68 0.0015 19.8 2.4 27 21-47 17-43 (138)
299 TIGR03366 HpnZ_proposed putati 27.2 2.1E+02 0.0045 19.5 5.3 22 28-49 200-221 (280)
300 PF05711 TylF: Macrocin-O-meth 27.2 26 0.00057 24.4 0.5 30 19-49 186-215 (248)
301 PRK02083 imidazole glycerol ph 26.8 1.3E+02 0.0029 20.4 3.9 19 75-93 203-221 (253)
302 cd02765 MopB_4 The MopB_4 CD i 26.7 75 0.0016 24.5 2.9 41 7-52 159-201 (567)
303 PF07308 DUF1456: Protein of u 26.5 72 0.0016 17.7 2.1 18 75-92 26-43 (68)
304 cd06542 GH18_EndoS-like Endo-b 26.4 1.2E+02 0.0026 20.5 3.7 29 21-49 126-154 (255)
305 PF06325 PrmA: Ribosomal prote 26.4 40 0.00086 24.1 1.3 33 19-51 232-264 (295)
306 PF07485 DUF1529: Domain of Un 26.3 29 0.00064 21.6 0.6 23 15-37 99-121 (123)
307 cd03142 GATase1_ThuA Type 1 gl 25.7 1.3E+02 0.0027 20.5 3.6 30 5-34 56-87 (215)
308 PLN02589 caffeoyl-CoA O-methyl 25.6 1.2E+02 0.0027 21.0 3.6 30 19-49 163-192 (247)
309 cd04909 ACT_PDH-BS C-terminal 25.6 71 0.0015 16.7 2.0 16 80-95 54-69 (69)
310 smart00513 SAP Putative DNA-bi 25.6 86 0.0019 14.6 2.3 16 80-95 5-20 (35)
311 COG0220 Predicted S-adenosylme 25.6 94 0.002 21.3 3.0 64 26-95 144-217 (227)
312 COG4353 Uncharacterized conser 25.3 1.3E+02 0.0027 20.1 3.3 29 22-51 69-97 (192)
313 PF14821 Thr_synth_N: Threonin 25.2 88 0.0019 17.6 2.4 57 30-91 16-78 (79)
314 PLN02617 imidazole glycerol ph 25.1 1.5E+02 0.0033 23.1 4.3 74 13-92 425-505 (538)
315 KOG3350 Uncharacterized conser 24.9 1.5E+02 0.0032 20.2 3.7 27 20-46 55-81 (217)
316 PF01250 Ribosomal_S6: Ribosom 24.6 79 0.0017 18.0 2.2 29 19-47 12-41 (92)
317 PF05687 DUF822: Plant protein 24.3 39 0.00085 21.8 0.9 15 81-95 48-62 (150)
318 cd02766 MopB_3 The MopB_3 CD i 24.3 71 0.0015 24.2 2.4 41 7-52 157-199 (501)
319 PRK14339 (dimethylallyl)adenos 24.1 1.9E+02 0.0042 21.5 4.6 44 7-50 27-71 (420)
320 COG5561 Predicted metal-bindin 24.0 81 0.0018 18.8 2.1 29 68-96 65-94 (101)
321 KOG1720 Protein tyrosine phosp 24.0 1.3E+02 0.0027 20.9 3.3 26 21-47 130-155 (225)
322 cd08230 glucose_DH Glucose deh 24.0 2.7E+02 0.0057 19.6 5.2 24 27-50 250-273 (355)
323 TIGR03798 ocin_TIGR03798 bacte 23.8 1E+02 0.0023 16.5 2.4 17 79-95 25-41 (64)
324 KOG1719 Dual specificity phosp 23.7 54 0.0012 21.7 1.4 23 10-34 129-151 (183)
325 TIGR01744 XPRTase xanthine pho 23.6 79 0.0017 21.0 2.3 20 34-53 112-131 (191)
326 PF13397 DUF4109: Domain of un 23.5 74 0.0016 19.4 1.9 14 78-91 87-100 (105)
327 cd05007 SIS_Etherase N-acetylm 23.4 1.1E+02 0.0023 21.3 3.0 23 24-46 34-56 (257)
328 cd03319 L-Ala-DL-Glu_epimerase 23.4 1.6E+02 0.0034 20.7 3.9 67 18-93 186-252 (316)
329 PRK00453 rpsF 30S ribosomal pr 23.3 1.4E+02 0.003 17.6 3.2 30 19-48 13-43 (108)
330 PRK13938 phosphoheptose isomer 23.2 1.2E+02 0.0026 20.2 3.1 22 25-46 31-52 (196)
331 PRK13510 sulfur transfer compl 23.1 84 0.0018 18.4 2.1 21 27-47 12-32 (95)
332 COG1438 ArgR Arginine represso 23.0 75 0.0016 20.6 2.0 21 75-95 17-37 (150)
333 PF00017 SH2: SH2 domain; Int 22.9 1E+02 0.0022 16.6 2.3 29 17-49 3-31 (77)
334 PF04504 DUF573: Protein of un 22.9 62 0.0014 19.1 1.5 24 18-41 5-28 (98)
335 PF06258 Mito_fiss_Elm1: Mitoc 22.9 98 0.0021 22.2 2.8 33 15-47 157-190 (311)
336 PRK13810 orotate phosphoribosy 22.8 72 0.0016 21.1 2.0 40 9-54 98-137 (187)
337 TIGR01033 DNA-binding regulato 22.7 60 0.0013 22.5 1.6 14 38-51 92-105 (238)
338 PTZ00373 60S Acidic ribosomal 22.5 1.1E+02 0.0024 18.8 2.5 21 75-95 15-36 (112)
339 COG0279 GmhA Phosphoheptose is 22.5 1.3E+02 0.0028 20.0 3.0 25 24-48 26-50 (176)
340 PLN00138 large subunit ribosom 22.2 1.1E+02 0.0024 18.7 2.6 21 75-95 13-34 (113)
341 COG1064 AdhP Zn-dependent alco 22.2 1.4E+02 0.0031 21.9 3.5 21 29-49 242-262 (339)
342 KOG1196 Predicted NAD-dependen 22.1 98 0.0021 22.7 2.6 25 25-49 232-256 (343)
343 cd07986 LPLAT_ACT14924-like Ly 21.9 1.3E+02 0.0028 19.8 3.1 23 24-46 83-105 (210)
344 cd00132 CRIB PAK (p21 activate 21.8 85 0.0018 15.5 1.7 16 79-94 26-41 (42)
345 PF02037 SAP: SAP domain; Int 21.7 85 0.0018 14.7 1.6 17 79-95 4-20 (35)
346 PRK07680 late competence prote 21.5 2.4E+02 0.0053 19.3 4.5 30 7-41 62-91 (273)
347 PRK10347 cell filamentation pr 21.3 97 0.0021 20.9 2.3 32 64-95 128-160 (200)
348 COG1782 Predicted metal-depend 21.3 1.3E+02 0.0027 23.8 3.1 26 25-50 394-419 (637)
349 PF11599 AviRa: RRNA methyltra 21.2 1.5E+02 0.0033 20.7 3.2 30 17-46 181-214 (246)
350 PF03793 PASTA: PASTA domain; 21.2 69 0.0015 16.6 1.4 19 77-95 7-25 (63)
351 cd04731 HisF The cyclase subun 21.1 2.4E+02 0.0052 18.9 4.3 18 75-92 199-216 (243)
352 TIGR03707 PPK2_P_aer polyphosp 21.1 1.1E+02 0.0023 21.1 2.6 26 22-47 71-96 (230)
353 PRK14755 transcriptional regul 21.1 51 0.0011 14.4 0.7 13 30-42 10-22 (26)
354 PF12760 Zn_Tnp_IS1595: Transp 21.0 81 0.0018 15.7 1.5 13 21-33 2-14 (46)
355 PF05920 Homeobox_KN: Homeobox 20.8 56 0.0012 16.0 0.9 11 80-90 26-36 (40)
356 COG1154 Dxs Deoxyxylulose-5-ph 20.7 4.6E+02 0.0099 21.1 6.2 49 38-91 408-461 (627)
357 PRK14966 unknown domain/N5-glu 20.5 1.3E+02 0.0027 22.9 3.0 21 26-47 361-381 (423)
358 TIGR00467 lysS_arch lysyl-tRNA 20.5 53 0.0012 25.4 1.1 13 19-31 2-14 (515)
359 cd04882 ACT_Bt0572_2 C-termina 20.4 81 0.0018 16.0 1.6 15 81-95 50-64 (65)
360 PRK00110 hypothetical protein; 20.3 85 0.0018 21.9 2.0 14 38-51 92-105 (245)
361 PRK09472 ftsA cell division pr 20.3 1.1E+02 0.0023 22.7 2.6 74 19-95 103-182 (420)
362 PLN03137 ATP-dependent DNA hel 20.3 2.5E+02 0.0053 24.4 4.8 65 19-90 875-939 (1195)
363 PF08351 DUF1726: Domain of un 20.3 1.5E+02 0.0032 17.3 2.7 25 26-50 25-49 (92)
364 PF09771 Tmemb_18A: Transmembr 20.2 81 0.0017 19.8 1.6 19 27-45 93-118 (125)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.95 E-value=2.8e-28 Score=165.84 Aligned_cols=88 Identities=32% Similarity=0.572 Sum_probs=77.8
Q ss_pred CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCC--CEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCcc
Q 034380 1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEP--GKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKE 78 (96)
Q Consensus 1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~g--g~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~ 78 (96)
||+++|.+|+|++++|||+|+|++|++||++++++|+|| |+|+|+|.++++.+..+........+|++||+.+ +|++
T Consensus 152 ~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~ 230 (241)
T PF00891_consen 152 FFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKE 230 (241)
T ss_dssp TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-
T ss_pred HHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCC
Confidence 679999999999999999999999999999999999999 9999999999998876643323368999999988 7999
Q ss_pred CCHHHHHHHHH
Q 034380 79 RTLEEFKSLAI 89 (96)
Q Consensus 79 Rt~~e~~~l~~ 89 (96)
||.+||++|++
T Consensus 231 rt~~e~~~ll~ 241 (241)
T PF00891_consen 231 RTEEEWEALLK 241 (241)
T ss_dssp EEHHHHHHHHH
T ss_pred cCHHHHHHHhC
Confidence 99999999985
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.95 E-value=1e-27 Score=169.36 Aligned_cols=96 Identities=46% Similarity=0.727 Sum_probs=84.3
Q ss_pred CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC-CCCCchhhhhhhhhhhhhhhcCCCCccC
Q 034380 1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE-FPETDIISKNISRLHITVSNLFPGAKER 79 (96)
Q Consensus 1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~-~~~~~~~~~~~~~~dl~ml~~~~~g~~R 79 (96)
||+.+|.+|+||++||||||+|++|++||+||+++|+|||+|+|+|.+.++ .......+.....+|+.|++.+.+|++|
T Consensus 230 mfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gker 309 (342)
T KOG3178|consen 230 MFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKER 309 (342)
T ss_pred ccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceec
Confidence 687799999999999999999999999999999999999999999999986 3322222334678999999988789999
Q ss_pred CHHHHHHHHHhhCcCCC
Q 034380 80 TLEEFKSLAIGLLNSVK 96 (96)
Q Consensus 80 t~~e~~~l~~~AG~~v~ 96 (96)
|.+||+.++.++||.|+
T Consensus 310 t~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 310 TLKEFQALLPEEGFPVC 326 (342)
T ss_pred cHHHHHhcchhhcCcee
Confidence 99999999999999874
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.70 E-value=1.5e-16 Score=111.64 Aligned_cols=92 Identities=12% Similarity=0.202 Sum_probs=67.9
Q ss_pred CC-CCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccC
Q 034380 1 MF-VEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKER 79 (96)
Q Consensus 1 ~F-~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~R 79 (96)
|| +++|.+|+|++++++|+|+++++.++|++++++|+|||+++|+|.+.+++..+........+.++.|+.. -..-+
T Consensus 208 ~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 285 (306)
T TIGR02716 208 IYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFS--VLGFK 285 (306)
T ss_pred ccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccc--cccCC
Confidence 45 4677789999999999999999999999999999999999999998877643321100111222222221 22345
Q ss_pred CHHHHHHHHHhhCcC
Q 034380 80 TLEEFKSLAIGLLNS 94 (96)
Q Consensus 80 t~~e~~~l~~~AG~~ 94 (96)
+.+||.+|+++|||+
T Consensus 286 ~~~e~~~ll~~aGf~ 300 (306)
T TIGR02716 286 EQARYKEILESLGYK 300 (306)
T ss_pred CHHHHHHHHHHcCCC
Confidence 589999999999997
No 4
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.51 E-value=1.2e-14 Score=97.96 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=63.9
Q ss_pred CCCC-cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCH
Q 034380 3 VEVP-KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTL 81 (96)
Q Consensus 3 ~~~P-~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~ 81 (96)
.|-+ ..|++|++|++-+++|++.+++|+||+++|+|+|.|+|-|++..... ..+| ..+++-.||.
T Consensus 117 ~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D-----~~DsSvTRs~ 182 (218)
T PF05891_consen 117 TPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFD-----EEDSSVTRSD 182 (218)
T ss_dssp ---TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEE-----TTTTEEEEEH
T ss_pred cCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccC-----CccCeeecCH
Confidence 3444 35999999999999999999999999999999999999999987542 1455 3568999999
Q ss_pred HHHHHHHHhhCcCC
Q 034380 82 EEFKSLAIGLLNSV 95 (96)
Q Consensus 82 ~e~~~l~~~AG~~v 95 (96)
+.|++||++||++|
T Consensus 183 ~~~~~lF~~AGl~~ 196 (218)
T PF05891_consen 183 EHFRELFKQAGLRL 196 (218)
T ss_dssp HHHHHHHHHCT-EE
T ss_pred HHHHHHHHHcCCEE
Confidence 99999999999976
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.01 E-value=1.6e-09 Score=73.64 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=62.5
Q ss_pred CCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhc------------
Q 034380 5 VPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNL------------ 72 (96)
Q Consensus 5 ~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~------------ 72 (96)
+|..|++++..++|.+++++..+++++++++|+|||.++|.|.+.+++.... ..+..+.+...
T Consensus 120 ~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~ 194 (239)
T TIGR00740 120 IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN-----HLLIDLHHQFKRANGYSELEISQ 194 (239)
T ss_pred CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHH-----HHHHHHHHHHHHHcCCCHHHHHH
Confidence 4557999999999999999999999999999999999999998876543211 11111111100
Q ss_pred -----CCCCccCCHHHHHHHHHhhCcC
Q 034380 73 -----FPGAKERTLEEFKSLAIGLLNS 94 (96)
Q Consensus 73 -----~~~g~~Rt~~e~~~l~~~AG~~ 94 (96)
...-+..|.+|+.+++++|||.
T Consensus 195 ~~~~~~~~~~~~s~~~~~~~l~~aGF~ 221 (239)
T TIGR00740 195 KRTALENVMRTDSIETHKARLKNVGFS 221 (239)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHcCCc
Confidence 0023467999999999999986
No 6
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.77 E-value=7.8e-08 Score=66.64 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=60.8
Q ss_pred CCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCH
Q 034380 4 EVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTL 81 (96)
Q Consensus 4 ~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~ 81 (96)
++|. .|+++...++|++++++..++|+++++.|+|||+++|.|...++..... ...... +... .-...+.
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~--~~~~~~-----~~~~-~~~~~~~ 183 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWD--EEFKAY-----IKKR-KYTLIPI 183 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcH--HHHHHH-----HHhc-CCCCCCH
Confidence 4554 4999999998889988889999999999999999999998766432211 011111 1111 1234588
Q ss_pred HHHHHHHHhhCcCC
Q 034380 82 EEFKSLAIGLLNSV 95 (96)
Q Consensus 82 ~e~~~l~~~AG~~v 95 (96)
++|.+++++|||.+
T Consensus 184 ~~~~~~l~~aGF~~ 197 (263)
T PTZ00098 184 QEYGDLIKSCNFQN 197 (263)
T ss_pred HHHHHHHHHCCCCe
Confidence 99999999999975
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.65 E-value=1.8e-07 Score=64.81 Aligned_cols=84 Identities=20% Similarity=0.141 Sum_probs=57.3
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhh--hh-cCC----------
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITV--SN-LFP---------- 74 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m--l~-~~~---------- 74 (96)
.|++++..++|+++|. .++|+++++.|+|||+++|.|...++....+.. ...++...+ +. ...
T Consensus 146 fD~V~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~ 221 (261)
T PLN02233 146 FDAITMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKS 221 (261)
T ss_pred EeEEEEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHH
Confidence 3999999999999875 678999999999999999999876653211110 000111000 00 000
Q ss_pred -CCccCCHHHHHHHHHhhCcCC
Q 034380 75 -GAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 -~g~~Rt~~e~~~l~~~AG~~v 95 (96)
-.+..|.+|+.++++++||++
T Consensus 222 s~~~f~s~~el~~ll~~aGF~~ 243 (261)
T PLN02233 222 SINEYLTGEELEKLALEAGFSS 243 (261)
T ss_pred HHHhcCCHHHHHHHHHHCCCCE
Confidence 134579999999999999974
No 8
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.65 E-value=1.6e-07 Score=64.44 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=60.4
Q ss_pred CCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-chh-h---hhhhhhhhh------hhhcC
Q 034380 5 VPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPET-DII-S---KNISRLHIT------VSNLF 73 (96)
Q Consensus 5 ~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~-~~~-~---~~~~~~dl~------ml~~~ 73 (96)
++.+|++++..++|.+++++-.+++++++++|+|||.+++.|.+..++... +.. . .+....+.. +....
T Consensus 123 ~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~ 202 (247)
T PRK15451 123 IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSML 202 (247)
T ss_pred CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345699999999999999888999999999999999999999876654321 100 0 000000110 00000
Q ss_pred C-CCccCCHHHHHHHHHhhCcC
Q 034380 74 P-GAKERTLEEFKSLAIGLLNS 94 (96)
Q Consensus 74 ~-~g~~Rt~~e~~~l~~~AG~~ 94 (96)
. .-..-|+++..+||++|||+
T Consensus 203 ~~~~~~~~~~~~~~~L~~aGF~ 224 (247)
T PRK15451 203 ENVMLTDSVETHKARLHKAGFE 224 (247)
T ss_pred HhhcccCCHHHHHHHHHHcCch
Confidence 0 12235899999999999985
No 9
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.64 E-value=3.2e-07 Score=63.37 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=60.3
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL 87 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l 87 (96)
.|+++...++|.+++. .++++++.+.|+|||++++.+.+..+.. +. ....++.+...+ .+..++.++|.++
T Consensus 147 fD~Vi~~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~--~~----~~~~~~~~~~~~-~~~~~~~~e~~~~ 217 (272)
T PRK11873 147 VDVIISNCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL--PE----EIRNDAELYAGC-VAGALQEEEYLAM 217 (272)
T ss_pred eeEEEEcCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC--CH----HHHHhHHHHhcc-ccCCCCHHHHHHH
Confidence 3999999999988875 5789999999999999999998765432 11 112334444433 5678899999999
Q ss_pred HHhhCcCC
Q 034380 88 AIGLLNSV 95 (96)
Q Consensus 88 ~~~AG~~v 95 (96)
++++||.+
T Consensus 218 l~~aGf~~ 225 (272)
T PRK11873 218 LAEAGFVD 225 (272)
T ss_pred HHHCCCCc
Confidence 99999874
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.62 E-value=9.7e-08 Score=60.29 Aligned_cols=80 Identities=13% Similarity=0.013 Sum_probs=59.8
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL 87 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l 87 (96)
.|++++..++|+.+| ..++|+++++.|+|||.++|.+...+... + ..+. .+........ +...+|.++|+++
T Consensus 79 fD~i~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~--~--~~~~-~~~~~~~~~~-~~~~~~~~~~~~l 150 (161)
T PF13489_consen 79 FDLIICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPS--P--RSFL-KWRYDRPYGG-HVHFFSPDELRQL 150 (161)
T ss_dssp EEEEEEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHH--H--HHHH-HCCGTCHHTT-TTEEBBHHHHHHH
T ss_pred hhhHhhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchh--h--hHHH-hcCCcCccCc-eeccCCHHHHHHH
Confidence 499999999999996 68999999999999999999998765311 0 0011 1111111112 6789999999999
Q ss_pred HHhhCcCC
Q 034380 88 AIGLLNSV 95 (96)
Q Consensus 88 ~~~AG~~v 95 (96)
++++|+++
T Consensus 151 l~~~G~~i 158 (161)
T PF13489_consen 151 LEQAGFEI 158 (161)
T ss_dssp HHHTTEEE
T ss_pred HHHCCCEE
Confidence 99999975
No 11
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.60 E-value=2.2e-07 Score=59.95 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=55.3
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhh-----h----------hhhhc
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLH-----I----------TVSNL 72 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~d-----l----------~ml~~ 72 (96)
.|++++..++|+++|. .+.|+++++.|+|||+++|.|...++..-.... ...... . .-+..
T Consensus 45 fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~ 120 (160)
T PLN02232 45 FDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKY 120 (160)
T ss_pred eeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEEEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHH
Confidence 3999999999999875 688999999999999999999876543211000 000000 0 00000
Q ss_pred CCCCccCCHHHHHHHHHhhCcC
Q 034380 73 FPGAKERTLEEFKSLAIGLLNS 94 (96)
Q Consensus 73 ~~~g~~Rt~~e~~~l~~~AG~~ 94 (96)
+ -..-.+.+|+.++++++||.
T Consensus 121 s-i~~f~~~~el~~ll~~aGF~ 141 (160)
T PLN02232 121 S-INGYLTGEELETLALEAGFS 141 (160)
T ss_pred H-HHHCcCHHHHHHHHHHcCCC
Confidence 0 12346899999999999996
No 12
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.46 E-value=1.5e-06 Score=64.36 Aligned_cols=81 Identities=9% Similarity=0.113 Sum_probs=60.6
Q ss_pred CCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCH
Q 034380 4 EVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTL 81 (96)
Q Consensus 4 ~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~ 81 (96)
++|. .|+++...++++++|. .++++++++.|+|||+++|.|....+....+ .+...+ ... +...++.
T Consensus 327 ~~~~~~fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~~~~~~-----~~~-g~~~~~~ 395 (475)
T PLN02336 327 TYPDNSFDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSP---EFAEYI-----KQR-GYDLHDV 395 (475)
T ss_pred CCCCCCEEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcH---HHHHHH-----Hhc-CCCCCCH
Confidence 3554 4999999999999875 5889999999999999999998765432221 111111 112 4568899
Q ss_pred HHHHHHHHhhCcCC
Q 034380 82 EEFKSLAIGLLNSV 95 (96)
Q Consensus 82 ~e~~~l~~~AG~~v 95 (96)
++|.+++++|||.+
T Consensus 396 ~~~~~~l~~aGF~~ 409 (475)
T PLN02336 396 QAYGQMLKDAGFDD 409 (475)
T ss_pred HHHHHHHHHCCCee
Confidence 99999999999985
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.40 E-value=1.2e-06 Score=63.01 Aligned_cols=73 Identities=18% Similarity=0.120 Sum_probs=54.1
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL 87 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l 87 (96)
.|+++...++|.|+|.+ ++|+++++.|+|||+++|.+.+.++... .+ ...+.. ....+.+|+.++
T Consensus 179 FDvVIs~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~~----~r--~~~~~~-------~~~~t~eEl~~l 243 (340)
T PLN02490 179 ADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPTFWL----SR--FFADVW-------MLFPKEEEYIEW 243 (340)
T ss_pred eeEEEEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcchhH----HH--Hhhhhh-------ccCCCHHHHHHH
Confidence 49999999999999874 6899999999999999998765543210 11 111211 123589999999
Q ss_pred HHhhCcCC
Q 034380 88 AIGLLNSV 95 (96)
Q Consensus 88 ~~~AG~~v 95 (96)
+++|||+.
T Consensus 244 L~~aGF~~ 251 (340)
T PLN02490 244 FTKAGFKD 251 (340)
T ss_pred HHHCCCeE
Confidence 99999963
No 14
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.39 E-value=2e-07 Score=63.74 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=38.3
Q ss_pred CCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhh----------------
Q 034380 5 VPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLH---------------- 66 (96)
Q Consensus 5 ~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~d---------------- 66 (96)
+|. .|+++++..+|+.+|. .+.|+++++.|+|||+++|+|...++.+ .....+..++.
T Consensus 112 ~~d~sfD~v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~--~~~~~~~~y~~~ilP~~g~l~~~~~~~ 187 (233)
T PF01209_consen 112 FPDNSFDAVTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNP--LLRALYKFYFKYILPLIGRLLSGDREA 187 (233)
T ss_dssp S-TT-EEEEEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSH--HHHHHHHH-------------------
T ss_pred CCCCceeEEEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCc--hhhceeeeeeccccccccccccccccc
Confidence 454 3999999999999985 5689999999999999999999888652 11000001111
Q ss_pred hhhhhcCCCCccCCHHHHHHHHHhhCcC
Q 034380 67 ITVSNLFPGAKERTLEEFKSLAIGLLNS 94 (96)
Q Consensus 67 l~ml~~~~~g~~Rt~~e~~~l~~~AG~~ 94 (96)
...+..+ --+-.+.+|+.+++++|||+
T Consensus 188 Y~yL~~S-i~~f~~~~~~~~~l~~~Gf~ 214 (233)
T PF01209_consen 188 YRYLPES-IRRFPSPEELKELLEEAGFK 214 (233)
T ss_dssp ----------------------------
T ss_pred ccccccc-cccccccccccccccccccc
Confidence 0111111 12345788999999999997
No 15
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.38 E-value=2.4e-06 Score=60.98 Aligned_cols=78 Identities=15% Similarity=0.026 Sum_probs=55.4
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCch--hhhhhhhhhhhhhhcCCCCccCCHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDI--ISKNISRLHITVSNLFPGAKERTLEEFK 85 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~--~~~~~~~~dl~ml~~~~~g~~Rt~~e~~ 85 (96)
.|+++...++|+..|. ..+|+++++.|+|||++++-..+.+.+..... ...+..+.. .=..+|.+++.
T Consensus 190 FD~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~--------~~~lps~~~l~ 259 (322)
T PRK15068 190 FDTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRN--------VYFIPSVPALK 259 (322)
T ss_pred cCEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCcc--------ceeCCCHHHHH
Confidence 4999999999998875 67899999999999999887766665433210 111111000 01246899999
Q ss_pred HHHHhhCcCC
Q 034380 86 SLAIGLLNSV 95 (96)
Q Consensus 86 ~l~~~AG~~v 95 (96)
+|+++|||++
T Consensus 260 ~~L~~aGF~~ 269 (322)
T PRK15068 260 NWLERAGFKD 269 (322)
T ss_pred HHHHHcCCce
Confidence 9999999974
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.37 E-value=1.9e-06 Score=63.87 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=59.9
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL 87 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l 87 (96)
.|++++..++|.+++++..++|+++++.|+|||++++.|.......+. .. .......|+..+|.++
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~------~~--------~~~~~~~~~~~~~~~~ 169 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS------KR--------KNNPTHYREPRFYTKV 169 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc------cc--------cCCCCeecChHHHHHH
Confidence 499999999999999999999999999999999999999876543211 01 0124556889999999
Q ss_pred HHhhCcCC
Q 034380 88 AIGLLNSV 95 (96)
Q Consensus 88 ~~~AG~~v 95 (96)
|.++|++.
T Consensus 170 f~~~~~~~ 177 (475)
T PLN02336 170 FKECHTRD 177 (475)
T ss_pred HHHheecc
Confidence 99999864
No 17
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.35 E-value=4.1e-06 Score=56.37 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=72.0
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL 87 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l 87 (96)
.|+++..|++|--+-+.+..+++.+.+.|++||.++|+-++.-+..-.+. -...||-.+-.-.+...-|..++..++
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~l 179 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEAL 179 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHH
Confidence 49999999999999999999999999999999999999998776543221 134677777665558999999999999
Q ss_pred HHhhCcCC
Q 034380 88 AIGLLNSV 95 (96)
Q Consensus 88 ~~~AG~~v 95 (96)
.+++|++.
T Consensus 180 A~~~GL~l 187 (204)
T PF06080_consen 180 AAAHGLEL 187 (204)
T ss_pred HHHCCCcc
Confidence 99999875
No 18
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.31 E-value=3.9e-06 Score=56.23 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=56.4
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhh----cCCC--------
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSN----LFPG-------- 75 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~----~~~~-------- 75 (96)
.|++++..++|++++. ..+|+++.+.|+|||+++++|...++... .......+...++. ...+
T Consensus 122 ~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T PRK00216 122 FDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSYL 196 (239)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHHH
Confidence 4999999999999874 67899999999999999999987664321 00000111110100 0001
Q ss_pred ----CccCCHHHHHHHHHhhCcCC
Q 034380 76 ----AKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 76 ----g~~Rt~~e~~~l~~~AG~~v 95 (96)
...++.++|.+++++|||.+
T Consensus 197 ~~~~~~~~~~~~~~~~l~~aGf~~ 220 (239)
T PRK00216 197 AESIRAFPDQEELAAMLEEAGFER 220 (239)
T ss_pred HHHHHhCCCHHHHHHHHHhCCCce
Confidence 23468899999999999975
No 19
>PLN02244 tocopherol O-methyltransferase
Probab=98.30 E-value=7.8e-06 Score=58.59 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=54.8
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC--CchhhhhhhhhhhhhhhcCCCCccCCHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPE--TDIISKNISRLHITVSNLFPGAKERTLEEFK 85 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~--~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~ 85 (96)
.|+++...++|+++|. .++++++++.|+|||+++|.+........ ..........++-...... .-.-.|.++|.
T Consensus 187 FD~V~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~ 263 (340)
T PLN02244 187 FDLVWSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYV 263 (340)
T ss_pred ccEEEECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHH
Confidence 3999999999999885 68899999999999999999865432211 0000000111111000000 11235899999
Q ss_pred HHHHhhCcCC
Q 034380 86 SLAIGLLNSV 95 (96)
Q Consensus 86 ~l~~~AG~~v 95 (96)
+++++|||.+
T Consensus 264 ~~l~~aGf~~ 273 (340)
T PLN02244 264 KLAESLGLQD 273 (340)
T ss_pred HHHHHCCCCe
Confidence 9999999974
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.28 E-value=4.5e-06 Score=59.49 Aligned_cols=78 Identities=14% Similarity=0.031 Sum_probs=56.3
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc--hhhhhhhhhhhhhhhcCCCCccCCHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETD--IISKNISRLHITVSNLFPGAKERTLEEFK 85 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~--~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~ 85 (96)
.|+++...++|++++. ...|++++++|+|||++++.+.+.+.+.... +...+..+.+. =.-.|.+++.
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv--------~flpS~~~L~ 258 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNV--------YFIPSVSALK 258 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccc--------ccCCCHHHHH
Confidence 4999999999999876 6789999999999999999888776543221 01111111110 1235899999
Q ss_pred HHHHhhCcCC
Q 034380 86 SLAIGLLNSV 95 (96)
Q Consensus 86 ~l~~~AG~~v 95 (96)
.|+++|||+.
T Consensus 259 ~~L~~aGF~~ 268 (314)
T TIGR00452 259 NWLEKVGFEN 268 (314)
T ss_pred HHHHHCCCeE
Confidence 9999999974
No 21
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.26 E-value=6.8e-06 Score=54.49 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=55.3
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhh---hhcCC-------C--
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITV---SNLFP-------G-- 75 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m---l~~~~-------~-- 75 (96)
.|++++...+|+.++ ...+++++++.|+|||++++.+...+... +. ...++..+ +.... +
T Consensus 107 ~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (223)
T TIGR01934 107 FDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANA--LL----KKFYKFYLKNVLPSIGGLISKNAEAY 178 (223)
T ss_pred EEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCch--hh----HHHHHHHHHHhhhhhhhhhcCCchhh
Confidence 499999999999887 46889999999999999999998655432 11 11111111 10000 0
Q ss_pred -------CccCCHHHHHHHHHhhCcCC
Q 034380 76 -------AKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 76 -------g~~Rt~~e~~~l~~~AG~~v 95 (96)
....+.++|..+++++||.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~aGf~~ 205 (223)
T TIGR01934 179 TYLPESIRAFPSQEELAAMLKEAGFEE 205 (223)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 12347899999999999974
No 22
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.24 E-value=3.7e-06 Score=57.83 Aligned_cols=48 Identities=27% Similarity=0.443 Sum_probs=41.8
Q ss_pred CCCcc--eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 034380 4 EVPKA--QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFP 53 (96)
Q Consensus 4 ~~P~~--D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~ 53 (96)
|+|.. |++.++..||+.+|- .+.|+.+++.|+|||+++|+|...++.+
T Consensus 114 Pf~D~sFD~vt~~fglrnv~d~--~~aL~E~~RVlKpgG~~~vle~~~p~~~ 163 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVTDI--DKALKEMYRVLKPGGRLLVLEFSKPDNP 163 (238)
T ss_pred CCCCCccCEEEeeehhhcCCCH--HHHHHHHHHhhcCCeEEEEEEcCCCCch
Confidence 45543 999999999999975 7789999999999999999999887654
No 23
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.16 E-value=1.2e-05 Score=55.20 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=53.2
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhh--hhhhhhh--hhcCCCCccCCHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNI--SRLHITV--SNLFPGAKERTLEE 83 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~--~~~dl~m--l~~~~~g~~Rt~~e 83 (96)
.|+++...++|..+|. .++++++++.|+|||++++......+........... ..+.-.+ .....+....+.++
T Consensus 90 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 167 (255)
T PRK14103 90 TDVVVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAG 167 (255)
T ss_pred ceEEEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHH
Confidence 5999999999999875 6789999999999999988632111110000000000 0011100 00011234579999
Q ss_pred HHHHHHhhCcCC
Q 034380 84 FKSLAIGLLNSV 95 (96)
Q Consensus 84 ~~~l~~~AG~~v 95 (96)
|.+++++|||.|
T Consensus 168 ~~~~l~~aGf~v 179 (255)
T PRK14103 168 YAELLTDAGCKV 179 (255)
T ss_pred HHHHHHhCCCeE
Confidence 999999999964
No 24
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.13 E-value=1e-05 Score=54.41 Aligned_cols=83 Identities=12% Similarity=0.150 Sum_probs=55.1
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhh----------------hhhh
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHI----------------TVSN 71 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl----------------~ml~ 71 (96)
.|++++...+|++++. .++|+++.+.|+|||++++.|...++.. ........++.. ..+.
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ 190 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH
Confidence 3999999999999876 5789999999999999999987554321 100000000110 0011
Q ss_pred cCCCCccCCHHHHHHHHHhhCcCC
Q 034380 72 LFPGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 72 ~~~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
.. .....|.+|+++++++|||.+
T Consensus 191 ~~-~~~~~~~~~l~~~l~~aGf~~ 213 (231)
T TIGR02752 191 ES-TRDFPGMDELAEMFQEAGFKD 213 (231)
T ss_pred HH-HHHcCCHHHHHHHHHHcCCCe
Confidence 11 223467899999999999975
No 25
>PRK08317 hypothetical protein; Provisional
Probab=98.13 E-value=2.1e-05 Score=52.41 Aligned_cols=83 Identities=12% Similarity=-0.024 Sum_probs=54.9
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC-CchhhhhhhhhhhhhhhcCCCCccCCHHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPE-TDIISKNISRLHITVSNLFPGAKERTLEEFKS 86 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~-~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~ 86 (96)
.|++++.+++|++++. ..+++++.+.|+|||.+++.+...+.... ............ .+... ....++..+|.+
T Consensus 88 ~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~ 162 (241)
T PRK08317 88 FDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILN--FWSDH-FADPWLGRRLPG 162 (241)
T ss_pred ceEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHH--HHHhc-CCCCcHHHHHHH
Confidence 4999999999999985 66899999999999999999854321110 000000111111 11111 344566789999
Q ss_pred HHHhhCcCC
Q 034380 87 LAIGLLNSV 95 (96)
Q Consensus 87 l~~~AG~~v 95 (96)
+++++||.+
T Consensus 163 ~l~~aGf~~ 171 (241)
T PRK08317 163 LFREAGLTD 171 (241)
T ss_pred HHHHcCCCc
Confidence 999999964
No 26
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.12 E-value=1.6e-05 Score=53.28 Aligned_cols=72 Identities=18% Similarity=0.136 Sum_probs=53.7
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL 87 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l 87 (96)
.|+++...++|++++. ..+++++++.|+|||++++.+.+.+.. ... .. + .. ..-..|..+|.++
T Consensus 68 fD~I~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~-----~~--~-----~~-~~~~~s~~~~~~~ 131 (224)
T smart00828 68 YDLVFGFEVIHHIKDK--MDLFSNISRHLKDGGHLVLADFIANLL-SAI-----EH--E-----ET-TSYLVTREEWAEL 131 (224)
T ss_pred CCEeehHHHHHhCCCH--HHHHHHHHHHcCCCCEEEEEEcccccC-ccc-----cc--c-----cc-ccccCCHHHHHHH
Confidence 4999999999999874 689999999999999999998754321 100 00 0 00 1224578999999
Q ss_pred HHhhCcCC
Q 034380 88 AIGLLNSV 95 (96)
Q Consensus 88 ~~~AG~~v 95 (96)
++++||++
T Consensus 132 l~~~Gf~~ 139 (224)
T smart00828 132 LARNNLRV 139 (224)
T ss_pred HHHCCCeE
Confidence 99999976
No 27
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.09 E-value=8.2e-06 Score=58.35 Aligned_cols=83 Identities=10% Similarity=-0.122 Sum_probs=54.9
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcC---CCCccCCHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLF---PGAKERTLEEF 84 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~---~~g~~Rt~~e~ 84 (96)
.|++++..++|+++|. ..+|+.+++.|+|||.++|........ ..........+ +.-+... .-.+..|.+|+
T Consensus 199 FD~Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~--~~~~~i~~~ey-i~~~lp~gth~~~~f~tp~eL 273 (322)
T PLN02396 199 FDAVLSLEVIEHVANP--AEFCKSLSALTIPNGATVLSTINRTMR--AYASTIVGAEY-ILRWLPKGTHQWSSFVTPEEL 273 (322)
T ss_pred CCEEEEhhHHHhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH--HHHHhhhhHHH-HHhcCCCCCcCccCCCCHHHH
Confidence 4999999999999987 578999999999999999987532210 00000000000 0001111 01246799999
Q ss_pred HHHHHhhCcCC
Q 034380 85 KSLAIGLLNSV 95 (96)
Q Consensus 85 ~~l~~~AG~~v 95 (96)
.++++++|+.+
T Consensus 274 ~~lL~~aGf~i 284 (322)
T PLN02396 274 SMILQRASVDV 284 (322)
T ss_pred HHHHHHcCCeE
Confidence 99999999976
No 28
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.95 E-value=7.7e-06 Score=47.01 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=33.3
Q ss_pred CCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 034380 4 EVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIV 44 (96)
Q Consensus 4 ~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I 44 (96)
|+|. .|++++..++|.+ ++..++++++++.|+|||+++|
T Consensus 55 ~~~~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 55 PFPDNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SS-TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccccccceeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence 4454 3999999999999 5578999999999999999986
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.94 E-value=1.7e-05 Score=54.44 Aligned_cols=84 Identities=11% Similarity=0.009 Sum_probs=53.4
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchh-hhhhhhhhhhhh-----hcCCCCccCCH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDII-SKNISRLHITVS-----NLFPGAKERTL 81 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~-~~~~~~~dl~ml-----~~~~~g~~Rt~ 81 (96)
.|++++..++|.+++. .++|+++.+.|+|||+++|.........-.... ..+... .-.+. ..+ -....+.
T Consensus 113 fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-p~~~~~~ 188 (255)
T PRK11036 113 VDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYV-QAGMPKRKKRTLS-PDYPLDP 188 (255)
T ss_pred CCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHH-HhcCccccccCCC-CCCCCCH
Confidence 4999999999999876 478999999999999999886543211000000 000000 00000 001 1234678
Q ss_pred HHHHHHHHhhCcCC
Q 034380 82 EEFKSLAIGLLNSV 95 (96)
Q Consensus 82 ~e~~~l~~~AG~~v 95 (96)
+++.++++++||++
T Consensus 189 ~~l~~~l~~aGf~~ 202 (255)
T PRK11036 189 EQVYQWLEEAGWQI 202 (255)
T ss_pred HHHHHHHHHCCCeE
Confidence 99999999999986
No 30
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.92 E-value=8.9e-05 Score=51.74 Aligned_cols=89 Identities=15% Similarity=0.013 Sum_probs=60.3
Q ss_pred CCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC-Cchhhh-------------hhhhhhh
Q 034380 4 EVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPE-TDIISK-------------NISRLHI 67 (96)
Q Consensus 4 ~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~-~~~~~~-------------~~~~~dl 67 (96)
|+|. .|.|.+..-+.+|+|- .+.|+.+++.|+||||+.|.|.---++.. ...+.+ +...-..
T Consensus 172 pFdd~s~D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sY 249 (296)
T KOG1540|consen 172 PFDDDSFDAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSY 249 (296)
T ss_pred CCCCCcceeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhh
Confidence 4555 4999999999999995 78899999999999999999985444210 000000 0011112
Q ss_pred hhhhcCCCCccCCHHHHHHHHHhhCcCC
Q 034380 68 TVSNLFPGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 68 ~ml~~~~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
..|... =-+.-+.+|+..+.++|||.+
T Consensus 250 qYLveS-I~rfp~qe~f~~miedaGF~~ 276 (296)
T KOG1540|consen 250 QYLVES-IRRFPPQEEFASMIEDAGFSS 276 (296)
T ss_pred hhHHhh-hhcCCCHHHHHHHHHHcCCcc
Confidence 223322 245668899999999999864
No 31
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.88 E-value=2.4e-05 Score=54.39 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=36.7
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
.|++++++++|.|++++..+++++++++|+|||.++|-.
T Consensus 204 fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 204 FDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred CCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 499999999999999999999999999999999999864
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.81 E-value=7.7e-05 Score=49.56 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=39.1
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
.|+++...++|.+++++..+++++++++|+|||++++++.+..+
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~ 139 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTA 139 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCC
Confidence 49999999999999999999999999999999998887765443
No 33
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.79 E-value=8.7e-05 Score=50.02 Aligned_cols=84 Identities=8% Similarity=-0.034 Sum_probs=52.2
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhc--CCCCccCCHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNL--FPGAKERTLEEFK 85 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~--~~~g~~Rt~~e~~ 85 (96)
.|++++.+++++.++. ..+|+++.+.|+|||++++.... ..............+-...... ...++..+.++|.
T Consensus 115 fD~Ii~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (233)
T PRK05134 115 FDVVTCMEMLEHVPDP--ASFVRACAKLVKPGGLVFFSTLN--RNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELA 190 (233)
T ss_pred ccEEEEhhHhhccCCH--HHHHHHHHHHcCCCcEEEEEecC--CChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHH
Confidence 4999999999999875 57899999999999999876532 1110000000000000001100 0123455889999
Q ss_pred HHHHhhCcCC
Q 034380 86 SLAIGLLNSV 95 (96)
Q Consensus 86 ~l~~~AG~~v 95 (96)
++++++|+.+
T Consensus 191 ~~l~~~Gf~~ 200 (233)
T PRK05134 191 AWLRQAGLEV 200 (233)
T ss_pred HHHHHCCCeE
Confidence 9999999974
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.76 E-value=9.4e-05 Score=49.07 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=38.6
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
.|+++...++|.+++++..++++++++.|+|||+++|++....
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~ 137 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDT 137 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence 5999999999999998899999999999999999888876543
No 35
>PRK06922 hypothetical protein; Provisional
Probab=97.73 E-value=6.4e-05 Score=58.22 Aligned_cols=46 Identities=30% Similarity=0.489 Sum_probs=40.4
Q ss_pred ceEeEecccccCC-----------ChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 034380 8 AQTIFMKWVLHDW-----------GDDLCLKILKNCYDALPEPGKIIVVESIMPEFP 53 (96)
Q Consensus 8 ~D~~ll~~vlh~~-----------~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~ 53 (96)
.|+++++.++|+| ++++..++|++++++|+|||+++|.|.+.++++
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~~ 544 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTEDK 544 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCch
Confidence 4999999999986 467889999999999999999999998766543
No 36
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.71 E-value=0.00011 Score=49.16 Aligned_cols=80 Identities=14% Similarity=0.034 Sum_probs=52.6
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhh-cCC-----CCccCCH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSN-LFP-----GAKERTL 81 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~-~~~-----~g~~Rt~ 81 (96)
.|++++.+++|...+. ..+|+++++.|+|||.+++.....+. ... .....+-.+.. ..+ .....+.
T Consensus 113 ~D~i~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (224)
T TIGR01983 113 FDVVTCMEVLEHVPDP--QAFIRACAQLLKPGGILFFSTINRTP--KSY----LLAIVGAEYILRIVPKGTHDWEKFIKP 184 (224)
T ss_pred ccEEEehhHHHhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCc--hHH----HHHHHhhhhhhhcCCCCcCChhhcCCH
Confidence 5999999999999876 47899999999999999887642111 010 01111111110 000 1234578
Q ss_pred HHHHHHHHhhCcCC
Q 034380 82 EEFKSLAIGLLNSV 95 (96)
Q Consensus 82 ~e~~~l~~~AG~~v 95 (96)
.+|.++++++|+++
T Consensus 185 ~~l~~~l~~~G~~i 198 (224)
T TIGR01983 185 SELTSWLESAGLRV 198 (224)
T ss_pred HHHHHHHHHcCCee
Confidence 89999999999986
No 37
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.66 E-value=7.1e-05 Score=52.83 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=35.8
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
-|++++++++..++++.-.+++++++++|+|||.+++=-
T Consensus 224 fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 224 FDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred cceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 399999999999999999999999999999999876643
No 38
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.62 E-value=0.00017 Score=49.88 Aligned_cols=85 Identities=15% Similarity=0.039 Sum_probs=62.8
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCc--cCCHHHHHH
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAK--ERTLEEFKS 86 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~--~Rt~~e~~~ 86 (96)
|.+.+--+|.-.+.++-.+.++++++.|+|||.|+.-|+-..+-.+-- ......++-+..+-.+|.+ --+.++.++
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR--F~~~~~i~~nfYVRgDGT~~YfF~~eeL~~ 223 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR--FKKGQCISENFYVRGDGTRAYFFTEEELDE 223 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh--ccCCceeecceEEccCCceeeeccHHHHHH
Confidence 999999999999999999999999999999999999998666532110 0012234444444222222 348999999
Q ss_pred HHHhhCcCC
Q 034380 87 LAIGLLNSV 95 (96)
Q Consensus 87 l~~~AG~~v 95 (96)
||.+|||..
T Consensus 224 ~f~~agf~~ 232 (264)
T KOG2361|consen 224 LFTKAGFEE 232 (264)
T ss_pred HHHhcccch
Confidence 999999864
No 39
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.58 E-value=8e-05 Score=52.06 Aligned_cols=77 Identities=17% Similarity=0.056 Sum_probs=47.9
Q ss_pred EeEecccccCCCh-HHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHH
Q 034380 10 TIFMKWVLHDWGD-DLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLA 88 (96)
Q Consensus 10 ~~ll~~vlh~~~d-~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~ 88 (96)
++++..+||..+| ++...+++..+++|+||+.|+|.-...+..+ ... ....++.--... .+..||.+|..++|
T Consensus 153 avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p--~~~---~~~~~~~~~~~~-~~~~Rs~~ei~~~f 226 (267)
T PF04672_consen 153 AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP--ERA---EALEAVYAQAGS-PGRPRSREEIAAFF 226 (267)
T ss_dssp EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH--HHH---HHHHHHHHHCCS-----B-HHHHHHCC
T ss_pred eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH--HHH---HHHHHHHHcCCC-CceecCHHHHHHHc
Confidence 5788899999988 8899999999999999999999988765332 111 112222222333 78999999999998
Q ss_pred HhhCcC
Q 034380 89 IGLLNS 94 (96)
Q Consensus 89 ~~AG~~ 94 (96)
. ||.
T Consensus 227 ~--g~e 230 (267)
T PF04672_consen 227 D--GLE 230 (267)
T ss_dssp T--TSE
T ss_pred C--CCc
Confidence 7 554
No 40
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.54 E-value=6.1e-05 Score=50.44 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=34.2
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
.|+++++|||-.++++.-.+++++++++|+|||-|++-.
T Consensus 137 fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 137 FDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred ccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 399999999999999999999999999999999998854
No 41
>PRK06202 hypothetical protein; Provisional
Probab=97.51 E-value=0.00034 Score=47.32 Aligned_cols=79 Identities=14% Similarity=0.007 Sum_probs=52.6
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhh------cCC----CCc
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSN------LFP----GAK 77 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~------~~~----~g~ 77 (96)
.|++++..++|+++|++..++|+++++.++ |.++|.|...+.. . +.......... ..+ --+
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~---~----~~~~~~~~~~~~~~~~~~~d~~~s~~~ 200 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL---A----YALFWAGTRLLSRSSFVHTDGLLSVRR 200 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH---H----HHHHHHHHHHhccCceeeccchHHHHh
Confidence 499999999999999988999999999887 5666665544321 0 00111111000 000 125
Q ss_pred cCCHHHHHHHHHhhCcCCC
Q 034380 78 ERTLEEFKSLAIGLLNSVK 96 (96)
Q Consensus 78 ~Rt~~e~~~l~~~AG~~v~ 96 (96)
.+|.+|+.+++++ ||+++
T Consensus 201 ~~~~~el~~ll~~-Gf~~~ 218 (232)
T PRK06202 201 SYTPAELAALAPQ-GWRVE 218 (232)
T ss_pred hcCHHHHHHHhhC-CCeEE
Confidence 6799999999999 99863
No 42
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.46 E-value=6.5e-05 Score=47.62 Aligned_cols=79 Identities=20% Similarity=0.121 Sum_probs=52.7
Q ss_pred cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhh-hhhhhhhhhcCCCCccCCHHHHH
Q 034380 7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNI-SRLHITVSNLFPGAKERTLEEFK 85 (96)
Q Consensus 7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~-~~~dl~ml~~~~~g~~Rt~~e~~ 85 (96)
+.|+++...++|++++. ..+++++.+.|+++|.+++.+....+.-......... ....+.+.. ... +.++|.
T Consensus 73 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~ 145 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIY----IGN-DKEEWK 145 (152)
T ss_dssp TEEEEEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC--------CCCGHH
T ss_pred CeeEEEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhh----ccc-CHHHHH
Confidence 45999999999999987 5789999999999999999998832211111001011 111111111 222 889999
Q ss_pred HHHHhhC
Q 034380 86 SLAIGLL 92 (96)
Q Consensus 86 ~l~~~AG 92 (96)
.++++||
T Consensus 146 ~~~~~ag 152 (152)
T PF13847_consen 146 YILEEAG 152 (152)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 9999998
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.38 E-value=0.00014 Score=42.76 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=23.8
Q ss_pred cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEE
Q 034380 7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKI 42 (96)
Q Consensus 7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l 42 (96)
+.|++++..++|++++ -.++|+++++.|+|||++
T Consensus 66 ~fD~V~~~~vl~~l~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 66 SFDLVVASNVLHHLED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --SEEEEE-TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred ccceehhhhhHhhhhh--HHHHHHHHHHHcCCCCCC
Confidence 3599999999999944 569999999999999986
No 44
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.36 E-value=0.00044 Score=48.44 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=57.4
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhh-hhhhhhhhcCCCCccCCHHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNIS-RLHITVSNLFPGAKERTLEEFKS 86 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~-~~dl~ml~~~~~g~~Rt~~e~~~ 86 (96)
.|.++--.++.+.+++.-.+++++|.+.|+|||+++|...+..+..... ... ..+...--..++|.-.|..++..
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~----~~~~~~~~i~kyiFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHA----ERRSSSDFIRKYIFPGGYLPSLSEILR 203 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHH----CTTCCCHHHHHHTSTTS---BHHHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchh----hcCCCceEEEEeeCCCCCCCCHHHHHH
Confidence 4888888889999998899999999999999999999888776542110 000 00111112245899999999999
Q ss_pred HHHhhCcCC
Q 034380 87 LAIGLLNSV 95 (96)
Q Consensus 87 l~~~AG~~v 95 (96)
.++++||+|
T Consensus 204 ~~~~~~l~v 212 (273)
T PF02353_consen 204 AAEDAGLEV 212 (273)
T ss_dssp HHHHTT-EE
T ss_pred HHhcCCEEE
Confidence 999999986
No 45
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.36 E-value=0.00038 Score=41.44 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=33.9
Q ss_pred cceEeEecc-cccCCCh-HHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 7 KAQTIFMKW-VLHDWGD-DLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 7 ~~D~~ll~~-vlh~~~d-~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
+.|++++.. .+|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 70 ~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 70 PFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 369999999 6775554 688999999999999999999865
No 46
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.25 E-value=0.0025 Score=43.58 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=50.7
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhh-----hhhhhhhhcC-CCCccCCH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNIS-----RLHITVSNLF-PGAKERTL 81 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~-----~~dl~ml~~~-~~g~~Rt~ 81 (96)
.|+++...++|..+|. .+++++++++|+|||.+++. .++....+....... -+...+.... ..+..-+.
T Consensus 94 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~---~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 168 (258)
T PRK01683 94 LDLIFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ---MPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPP 168 (258)
T ss_pred ccEEEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEE---CCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCH
Confidence 5999999999988775 68899999999999999885 222221111000000 0111111000 01234567
Q ss_pred HHHHHHHHhhCcCC
Q 034380 82 EEFKSLAIGLLNSV 95 (96)
Q Consensus 82 ~e~~~l~~~AG~~v 95 (96)
.++.+++.++|+.|
T Consensus 169 ~~~~~~l~~~g~~v 182 (258)
T PRK01683 169 HAYYDALAPAACRV 182 (258)
T ss_pred HHHHHHHHhCCCce
Confidence 78999999999766
No 47
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.23 E-value=0.00033 Score=47.06 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=35.7
Q ss_pred ceEeEecccccCCCh-HHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 8 AQTIFMKWVLHDWGD-DLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d-~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
.|+++++-|++.+++ ++-.+.++++.++|+|||.+|+...
T Consensus 107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 399999999999987 6788899999999999999999775
No 48
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.23 E-value=0.00075 Score=47.28 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=38.2
Q ss_pred CCcc-eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 5 VPKA-QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 5 ~P~~-D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
.++. |+++++|||-.++.+.=.+++++.+++|+|||.|+|=.
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 4554 99999999999999999999999999999999998854
No 49
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.20 E-value=0.0028 Score=42.19 Aligned_cols=72 Identities=15% Similarity=0.040 Sum_probs=50.0
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL 87 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l 87 (96)
.|+++...++|..+|. .++|+++++.|+|||.+++.+...+... .....+. .. +...++.++|.++
T Consensus 99 fD~vi~~~~l~~~~~~--~~~l~~~~~~L~~~G~l~~~~~~~~~~~------~~~~~~~-----~~-~~~~~~~~~~~~~ 164 (240)
T TIGR02072 99 FDLIVSNLALQWCDDL--SQALSELARVLKPGGLLAFSTFGPGTLH------ELRQSFG-----QH-GLRYLSLDELKAL 164 (240)
T ss_pred eeEEEEhhhhhhccCH--HHHHHHHHHHcCCCcEEEEEeCCccCHH------HHHHHHH-----Hh-ccCCCCHHHHHHH
Confidence 4999999999988764 6789999999999999998865332210 0011111 01 4566788888888
Q ss_pred HHhhCcC
Q 034380 88 AIGLLNS 94 (96)
Q Consensus 88 ~~~AG~~ 94 (96)
+.++ +.
T Consensus 165 l~~~-f~ 170 (240)
T TIGR02072 165 LKNS-FE 170 (240)
T ss_pred HHHh-cC
Confidence 8876 53
No 50
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.15 E-value=0.0011 Score=46.44 Aligned_cols=43 Identities=19% Similarity=0.109 Sum_probs=38.4
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
.|+++...++|..++++...+++++.+.|+|||.+++++.+..
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~ 227 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDT 227 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 4999999999999999999999999999999999888765543
No 51
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.13 E-value=0.003 Score=42.20 Aligned_cols=77 Identities=12% Similarity=-0.032 Sum_probs=48.9
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhh-hh----cCCCCccCCHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITV-SN----LFPGAKERTLE 82 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m-l~----~~~~g~~Rt~~ 82 (96)
.|++++..++|+|++++..++++++.+.++ |+.++.. .+.. .. . ..+.... .. ........+.+
T Consensus 128 fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~---~~~~--~~-~----~~~~~l~~~~~~~~~~~~~~~~~~~ 196 (230)
T PRK07580 128 FDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTF---APYT--PL-L----ALLHWIGGLFPGPSRTTRIYPHREK 196 (230)
T ss_pred cCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEE---CCcc--HH-H----HHHHHhccccCCccCCCCccccCHH
Confidence 499999999999999999999999988654 3333322 1211 11 0 0111100 00 11134556889
Q ss_pred HHHHHHHhhCcCC
Q 034380 83 EFKSLAIGLLNSV 95 (96)
Q Consensus 83 e~~~l~~~AG~~v 95 (96)
+|.++++++||++
T Consensus 197 ~~~~~l~~~Gf~~ 209 (230)
T PRK07580 197 GIRRALAAAGFKV 209 (230)
T ss_pred HHHHHHHHCCCce
Confidence 9999999999986
No 52
>PLN03075 nicotianamine synthase; Provisional
Probab=97.13 E-value=0.00063 Score=48.28 Aligned_cols=38 Identities=8% Similarity=0.197 Sum_probs=34.7
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
.|++++. ++|+|+.++=.++|+++++.|+|||.+++--
T Consensus 196 FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 196 YDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 4999999 9999988888999999999999999998754
No 53
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.11 E-value=0.0043 Score=44.12 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=54.6
Q ss_pred CcceEeEecccccCCChHHHHH-HHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCC-----ccC
Q 034380 6 PKAQTIFMKWVLHDWGDDLCLK-ILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGA-----KER 79 (96)
Q Consensus 6 P~~D~~ll~~vlh~~~d~~~~~-lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g-----~~R 79 (96)
|..++.+.+-+.-.|+|.+.++ .|+.+++++.|||.+|--- .+..|.-+..+.. +....+| +.|
T Consensus 208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg-----QPwHPQle~IAr~-----LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG-----QPWHPQLEMIARV-----LTSHRDGKAWVMRRR 277 (311)
T ss_pred CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC-----CCCCcchHHHHHH-----HhcccCCCceEEEec
Confidence 4459999999999999987555 6999999999999886432 2222211101111 1111123 589
Q ss_pred CHHHHHHHHHhhCcC
Q 034380 80 TLEEFKSLAIGLLNS 94 (96)
Q Consensus 80 t~~e~~~l~~~AG~~ 94 (96)
|.+|+.+|++.|||+
T Consensus 278 sq~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 278 SQAEMDQLVEAAGFE 292 (311)
T ss_pred CHHHHHHHHHHcCCc
Confidence 999999999999986
No 54
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.06 E-value=0.0013 Score=46.51 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=33.0
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIV 44 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I 44 (96)
.++++...+|+++++++.++|++++++|+|||.++|
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 467777899999999999999999999999999886
No 55
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.04 E-value=0.0021 Score=45.90 Aligned_cols=79 Identities=13% Similarity=-0.061 Sum_probs=47.1
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCC---CCccCCHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFP---GAKERTLEEF 84 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~---~g~~Rt~~e~ 84 (96)
.|++++..++|+++++....+++++.+ +.+ |+++|.. .+... ........-. .+.... ..-..+.+|+
T Consensus 213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~-g~liIs~--~p~~~---~~~~l~~~g~--~~~g~~~~~r~y~~s~eel 283 (315)
T PLN02585 213 YDTVTCLDVLIHYPQDKADGMIAHLAS-LAE-KRLIISF--APKTL---YYDILKRIGE--LFPGPSKATRAYLHAEADV 283 (315)
T ss_pred cCEEEEcCEEEecCHHHHHHHHHHHHh-hcC-CEEEEEe--CCcch---HHHHHHHHHh--hcCCCCcCceeeeCCHHHH
Confidence 499999999999999988889998885 444 4555522 22211 0000001001 010000 1112389999
Q ss_pred HHHHHhhCcCC
Q 034380 85 KSLAIGLLNSV 95 (96)
Q Consensus 85 ~~l~~~AG~~v 95 (96)
++++++|||+|
T Consensus 284 ~~lL~~AGf~v 294 (315)
T PLN02585 284 ERALKKAGWKV 294 (315)
T ss_pred HHHHHHCCCEE
Confidence 99999999986
No 56
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.03 E-value=0.0025 Score=43.50 Aligned_cols=79 Identities=19% Similarity=0.030 Sum_probs=53.5
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHH
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLA 88 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~ 88 (96)
|+++..-+|.--.| .++.|+++++.|+|||+++.+|.+..+.+.-... .+...+-.--..+ .|...|.+-|+.|
T Consensus 147 DtVV~TlvLCSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i--~q~v~ep~~~~~~-dGC~ltrd~~e~L- 220 (252)
T KOG4300|consen 147 DTVVCTLVLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRI--LQQVAEPLWHLES-DGCVLTRDTGELL- 220 (252)
T ss_pred eeEEEEEEEeccCC--HHHHHHHHHHhcCCCcEEEEEecccccchHHHHH--HHHHhchhhheec-cceEEehhHHHHh-
Confidence 99999999887766 5999999999999999999999998876531100 1111221111223 6888888777654
Q ss_pred HhhCc
Q 034380 89 IGLLN 93 (96)
Q Consensus 89 ~~AG~ 93 (96)
++|-|
T Consensus 221 eda~f 225 (252)
T KOG4300|consen 221 EDAEF 225 (252)
T ss_pred hhccc
Confidence 44443
No 57
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.00 E-value=0.00072 Score=46.64 Aligned_cols=88 Identities=14% Similarity=-0.008 Sum_probs=56.1
Q ss_pred cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHH
Q 034380 7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKS 86 (96)
Q Consensus 7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~ 86 (96)
+.|++++-.||++.+|.+. ++++|.+-++|||.+++.........---..........+.---..+-++-...+|...
T Consensus 124 ~FDvV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~ 201 (243)
T COG2227 124 QFDVVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIR 201 (243)
T ss_pred CccEEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHH
Confidence 3599999999999999865 89999999999999988776533211000000000111110001111356777889999
Q ss_pred HHHhhCcCCC
Q 034380 87 LAIGLLNSVK 96 (96)
Q Consensus 87 l~~~AG~~v~ 96 (96)
++..+|+.++
T Consensus 202 ~~~~~~~~~~ 211 (243)
T COG2227 202 WLLGANLKII 211 (243)
T ss_pred hcccCCceEE
Confidence 9998887653
No 58
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=96.89 E-value=0.0042 Score=45.44 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=53.1
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL 87 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l 87 (96)
.|+++...++++.++..-..+++++.+.|+|||++++.+...+...... ..+.+- .. .++|.-.+.+++.+.
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~--yi-fp~g~lps~~~i~~~ 300 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINK--YI-FPNGCLPSVRQIAQA 300 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCcee--ee-cCCCcCCCHHHHHHH
Confidence 4999988899999888888999999999999999999886555332111 011110 11 235666677776665
Q ss_pred HHhhCcCC
Q 034380 88 AIGLLNSV 95 (96)
Q Consensus 88 ~~~AG~~v 95 (96)
++ .|+.|
T Consensus 301 ~~-~~~~v 307 (383)
T PRK11705 301 SE-GLFVM 307 (383)
T ss_pred HH-CCcEE
Confidence 44 35543
No 59
>PRK04266 fibrillarin; Provisional
Probab=96.87 E-value=0.002 Score=43.99 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=24.3
Q ss_pred eEeEecccccCCChH-HHHHHHHHHHHhCCCCCEEEEE
Q 034380 9 QTIFMKWVLHDWGDD-LCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 9 D~~ll~~vlh~~~d~-~~~~lL~~~~~al~~gg~l~I~ 45 (96)
|+++ |+.++. +...+|+++++.|+|||+++|.
T Consensus 143 D~i~-----~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 143 DVIY-----QDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CEEE-----ECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 6554 666544 3456789999999999999994
No 60
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.84 E-value=0.0071 Score=41.24 Aligned_cols=78 Identities=6% Similarity=0.026 Sum_probs=50.2
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL 87 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l 87 (96)
.|+++....+|..+| ..++|+++.+.|+|||.+++.....+.- + + ....+... -.......-.+.+++.++
T Consensus 104 fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~---~--e-l~~~~~~~-~~~~~~~~~~~~~~l~~~ 174 (251)
T PRK10258 104 FDLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSL---P--E-LHQAWQAV-DERPHANRFLPPDAIEQA 174 (251)
T ss_pred EEEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCch---H--H-HHHHHHHh-ccCCccccCCCHHHHHHH
Confidence 499998888886665 4688999999999999999876543321 1 0 11111100 000112345688999999
Q ss_pred HHhhCcC
Q 034380 88 AIGLLNS 94 (96)
Q Consensus 88 ~~~AG~~ 94 (96)
+..+|+.
T Consensus 175 l~~~~~~ 181 (251)
T PRK10258 175 LNGWRYQ 181 (251)
T ss_pred HHhCCce
Confidence 9888764
No 61
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=96.81 E-value=0.00097 Score=39.37 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=29.5
Q ss_pred ceEeEec-ccccCCChHHHHHHHHHHHHhCCCCC
Q 034380 8 AQTIFMK-WVLHDWGDDLCLKILKNCYDALPEPG 40 (96)
Q Consensus 8 ~D~~ll~-~vlh~~~d~~~~~lL~~~~~al~~gg 40 (96)
.|++++. .++|++++++..++++++.+.++|||
T Consensus 68 ~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 68 FDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred eeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5999995 55999999999999999999999987
No 62
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.76 E-value=0.005 Score=41.21 Aligned_cols=81 Identities=11% Similarity=-0.020 Sum_probs=49.3
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhh--cCCCCccCCHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSN--LFPGAKERTLEEFK 85 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~--~~~~g~~Rt~~e~~ 85 (96)
.|+++...+++.+++++..++++++.+.+++++ ++.+ .+.. .. .. ....+.-.... ...+-..++.+++.
T Consensus 120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~-~i~~---~~~~--~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
T TIGR02021 120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERV-IFTF---APKT--AW-LA-FLKMIGELFPGSSRATSAYLHPMTDLE 191 (219)
T ss_pred cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCE-EEEE---CCCc--hH-HH-HHHHHHhhCcCcccccceEEecHHHHH
Confidence 599999999999998888899999998776542 2222 1211 11 00 00011100000 00123456999999
Q ss_pred HHHHhhCcCCC
Q 034380 86 SLAIGLLNSVK 96 (96)
Q Consensus 86 ~l~~~AG~~v~ 96 (96)
++++++||+|.
T Consensus 192 ~~l~~~Gf~v~ 202 (219)
T TIGR02021 192 RALGELGWKIV 202 (219)
T ss_pred HHHHHcCceee
Confidence 99999999873
No 63
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.75 E-value=0.0085 Score=42.36 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=63.9
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL 87 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l 87 (96)
-|-++---++++++.+.-...++++++.|+|||++++.....++.+... +. +...--.+++|.-+|..+....
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~----~~---~~i~~yiFPgG~lPs~~~i~~~ 210 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRR----FP---DFIDKYIFPGGELPSISEILEL 210 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCccccc----ch---HHHHHhCCCCCcCCCHHHHHHH
Confidence 4777777889999999999999999999999999999999887755310 11 1111112469999999999999
Q ss_pred HHhhCcCC
Q 034380 88 AIGLLNSV 95 (96)
Q Consensus 88 ~~~AG~~v 95 (96)
..++|+.|
T Consensus 211 ~~~~~~~v 218 (283)
T COG2230 211 ASEAGFVV 218 (283)
T ss_pred HHhcCcEE
Confidence 99999987
No 64
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.55 E-value=0.0099 Score=39.83 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=38.2
Q ss_pred CCCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 3 VEVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 3 ~~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
+++|. .|+++...++|++++++..+.++++.+.+ ++.++|.|...+.
T Consensus 99 ~~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 99 DPFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred CCCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 44554 49999999999999888999999999986 6688888876554
No 65
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.36 E-value=0.012 Score=33.02 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=33.4
Q ss_pred cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380 7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
+.|++++...++.+ .+...++++++.+.++|||.+++.
T Consensus 66 ~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 66 SFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 35999999999887 667899999999999999999875
No 66
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.34 E-value=0.0073 Score=42.39 Aligned_cols=84 Identities=18% Similarity=0.094 Sum_probs=55.4
Q ss_pred cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCC----CccCCHH
Q 034380 7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPG----AKERTLE 82 (96)
Q Consensus 7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~----g~~Rt~~ 82 (96)
..|+++++.|+++..|. ..+++.+.+.|+|||+++|-.....-....+. ..+.+........| .+-=+.+
T Consensus 158 ~fDaVvcsevleHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~~~~----i~~~E~vl~ivp~Gth~~ekfi~p~ 231 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSFAGT----IFLAEIVLRIVPKGTHTWEKFINPE 231 (282)
T ss_pred ccceeeeHHHHHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHhhcc----ccHHHHHHHhcCCCCcCHHHcCCHH
Confidence 36999999999999886 78899999999999999998754331111000 00111111111112 2345788
Q ss_pred HHHHHHHhhCcCCC
Q 034380 83 EFKSLAIGLLNSVK 96 (96)
Q Consensus 83 e~~~l~~~AG~~v~ 96 (96)
|...++..+|.+|.
T Consensus 232 e~~~~l~~~~~~v~ 245 (282)
T KOG1270|consen 232 ELTSILNANGAQVN 245 (282)
T ss_pred HHHHHHHhcCcchh
Confidence 99999999988763
No 67
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.18 E-value=0.032 Score=38.09 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=55.2
Q ss_pred CC-CCCCc-----ceEeEecccccCCChHH-HHHHHHHHHHhCCCCCE-----EEEEeeecCCCCCCchhhhhhhhhhhh
Q 034380 1 MF-VEVPK-----AQTIFMKWVLHDWGDDL-CLKILKNCYDALPEPGK-----IIVVESIMPEFPETDIISKNISRLHIT 68 (96)
Q Consensus 1 ~F-~~~P~-----~D~~ll~~vlh~~~d~~-~~~lL~~~~~al~~gg~-----l~I~e~~~~~~~~~~~~~~~~~~~dl~ 68 (96)
|| -|+|. .|++.++-||...|+.. --++|+++.+-|+|+|. ++|+ +|...
T Consensus 92 Fm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV---lP~~C--------------- 153 (219)
T PF11968_consen 92 FMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV---LPLPC--------------- 153 (219)
T ss_pred cccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE---eCchH---------------
Confidence 44 36773 39999999999999654 45899999999999998 6655 33221
Q ss_pred hhhcCCCCccCCHHHHHHHHHhhCcCC
Q 034380 69 VSNLFPGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 69 ml~~~~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
.+ |++--+.+.|+++++.-||..
T Consensus 154 ---v~-NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 154 ---VT-NSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred ---hh-cccccCHHHHHHHHHhCCcEE
Confidence 12 777778888999999888753
No 68
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.05 E-value=0.024 Score=38.28 Aligned_cols=43 Identities=7% Similarity=0.155 Sum_probs=37.8
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
.|.++-+.++|.++.+.-.+.++++.++|+|||+++++-...+
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 4999999999999999999999999999999999777765543
No 69
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.03 E-value=0.015 Score=41.81 Aligned_cols=41 Identities=7% Similarity=0.213 Sum_probs=34.9
Q ss_pred eEeEecccccCCChHHHHHHHHHHHH-hCCCCCEEEE-Eeeec
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYD-ALPEPGKIIV-VESIM 49 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~-al~~gg~l~I-~e~~~ 49 (96)
-++++...+.|++++++..+|+++++ .|.||+.++| +|.+.
T Consensus 159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k 201 (319)
T TIGR03439 159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCK 201 (319)
T ss_pred EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 57777899999999999999999999 9999988777 34443
No 70
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=95.76 E-value=0.041 Score=37.30 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=36.5
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
.|.++=+.++|.++.+.-.+.++++.++|+|||.++++-...+
T Consensus 117 fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~ 159 (218)
T PRK13255 117 VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYP 159 (218)
T ss_pred eeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeC
Confidence 3999999999999999999999999999999997665444333
No 71
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.76 E-value=0.039 Score=39.56 Aligned_cols=76 Identities=16% Similarity=0.067 Sum_probs=54.7
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc--hhhhhhhhhhhhhhhcCCCCccCCHHHHHH
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETD--IISKNISRLHITVSNLFPGAKERTLEEFKS 86 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~--~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~ 86 (96)
|++++-.||-+-.+. ...|+.++++|+|||.+|+--.+++.+.... +..+++.+-+. =---|..-+..
T Consensus 184 DtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv--------~FiPs~~~L~~ 253 (315)
T PF08003_consen 184 DTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV--------WFIPSVAALKN 253 (315)
T ss_pred CEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce--------EEeCCHHHHHH
Confidence 999999999998887 8889999999999999887666677654321 11122222111 12347889999
Q ss_pred HHHhhCcC
Q 034380 87 LAIGLLNS 94 (96)
Q Consensus 87 l~~~AG~~ 94 (96)
|++++||+
T Consensus 254 wl~r~gF~ 261 (315)
T PF08003_consen 254 WLERAGFK 261 (315)
T ss_pred HHHHcCCc
Confidence 99999985
No 72
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=95.65 E-value=0.027 Score=39.35 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=49.7
Q ss_pred CCcceEeEe----cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCC
Q 034380 5 VPKAQTIFM----KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERT 80 (96)
Q Consensus 5 ~P~~D~~ll----~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt 80 (96)
.|..|++++ +||==||.|+--+++++++.+-|.|||.+|+ | +++-.+ +...+... .-+..+..--.-.
T Consensus 164 ~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-E----PQpWks-Y~kaar~~--e~~~~ny~~i~lk 235 (288)
T KOG2899|consen 164 QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-E----PQPWKS-YKKAARRS--EKLAANYFKIFLK 235 (288)
T ss_pred cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-c----CCchHH-HHHHHHHH--HHhhcCccceecC
Confidence 456677765 7777899999999999999999999998754 3 232221 11111111 1111222344556
Q ss_pred HHHHHHHHHhhC
Q 034380 81 LEEFKSLAIGLL 92 (96)
Q Consensus 81 ~~e~~~l~~~AG 92 (96)
.+.+..|+.+++
T Consensus 236 p~~f~~~l~q~~ 247 (288)
T KOG2899|consen 236 PEDFEDWLNQIV 247 (288)
T ss_pred HHHHHhhhhhhh
Confidence 667777776663
No 73
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.58 E-value=0.0045 Score=37.93 Aligned_cols=36 Identities=28% Similarity=0.684 Sum_probs=29.7
Q ss_pred eEeEe----cccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 034380 9 QTIFM----KWVLHDWGDDLCLKILKNCYDALPEPGKIIV 44 (96)
Q Consensus 9 D~~ll----~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I 44 (96)
|++++ +||==+|+|+-..++++++++.|+|||.+|+
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 55544 5666699999999999999999999987754
No 74
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=0.0069 Score=39.64 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=36.5
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
+|+++..||+-++.-++....|+.|.+-|+|||+|-|.=
T Consensus 48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 599999999999999999999999999999999987753
No 75
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.35 E-value=0.025 Score=37.85 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=36.9
Q ss_pred CCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380 5 VPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI 48 (96)
Q Consensus 5 ~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~ 48 (96)
+|+ .|+++...|+|..+.+...++++++.++++|||.++|...+
T Consensus 91 ~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 91 FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp -TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 344 49998888999999999999999999999999998886654
No 76
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.15 E-value=0.12 Score=35.46 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=39.7
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
.|+++=+.+++.++++.-.+..+++.+.|+|||+++++-.-.+.
T Consensus 125 fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~ 168 (226)
T PRK13256 125 FDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK 168 (226)
T ss_pred cCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC
Confidence 49999999999999999999999999999999999998765443
No 77
>PRK05785 hypothetical protein; Provisional
Probab=94.49 E-value=0.11 Score=35.27 Aligned_cols=40 Identities=10% Similarity=0.160 Sum_probs=32.6
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
.|+++....+|+++|. .+.|+++++.|+| .++|+|...++
T Consensus 111 fD~v~~~~~l~~~~d~--~~~l~e~~RvLkp--~~~ile~~~p~ 150 (226)
T PRK05785 111 FDVVMSSFALHASDNI--EKVIAEFTRVSRK--QVGFIAMGKPD 150 (226)
T ss_pred EEEEEecChhhccCCH--HHHHHHHHHHhcC--ceEEEEeCCCC
Confidence 3999999999999885 6689999999999 45677765544
No 78
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=94.33 E-value=0.15 Score=37.53 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=33.1
Q ss_pred ceEeEec---ccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 8 AQTIFMK---WVLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 8 ~D~~ll~---~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
.|++++- +..|.++++.+.++++.+++.|+|||+++|+-
T Consensus 299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5988884 45566788888999999999999999999984
No 79
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=94.12 E-value=0.16 Score=36.69 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=33.4
Q ss_pred ceEeEecccccCC---ChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 8 AQTIFMKWVLHDW---GDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 8 ~D~~ll~~vlh~~---~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
.|+++..--+|+. +.+...++++.+.+.|+|||.++|+-.
T Consensus 262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 4999988778863 456678999999999999999988765
No 80
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=94.05 E-value=0.18 Score=32.59 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=32.6
Q ss_pred ceEeEecccccCCChH-------------------HHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 8 AQTIFMKWVLHDWGDD-------------------LCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~-------------------~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
.|+++..-..|..+++ ...++++.+.+.|+|||++++++....
T Consensus 83 fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 83 FDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred ccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 5988887766655442 146789999999999999999886443
No 81
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=93.95 E-value=0.22 Score=32.72 Aligned_cols=78 Identities=15% Similarity=0.047 Sum_probs=44.7
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhh---------hhhcCCCCcc
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHIT---------VSNLFPGAKE 78 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~---------ml~~~~~g~~ 78 (96)
.|++++.+++|+.+|. .++|+++.+. ++.++|. . +...... ........-. ......+.+.
T Consensus 76 fD~Vi~~~~l~~~~d~--~~~l~e~~r~---~~~~ii~-~--p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (194)
T TIGR02081 76 FDYVILSQTLQATRNP--EEILDEMLRV---GRHAIVS-F--PNFGYWR--VRWSILTKGRMPVTGELPYDWYNTPNIHF 145 (194)
T ss_pred cCEEEEhhHhHcCcCH--HHHHHHHHHh---CCeEEEE-c--CChhHHH--HHHHHHhCCccccCCCCCccccCCCCccc
Confidence 5999999999999874 5678877665 4444432 1 1110000 0000000000 0001124567
Q ss_pred CCHHHHHHHHHhhCcCC
Q 034380 79 RTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 79 Rt~~e~~~l~~~AG~~v 95 (96)
.|.+++.++++++||+|
T Consensus 146 ~s~~~~~~ll~~~Gf~v 162 (194)
T TIGR02081 146 CTIADFEDLCGELNLRI 162 (194)
T ss_pred CcHHHHHHHHHHCCCEE
Confidence 89999999999999986
No 82
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=93.95 E-value=0.28 Score=33.06 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 034380 26 LKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~ 45 (96)
..+++++.+.|+|||.+++.
T Consensus 197 ~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 197 RRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred HHHHHHHHHhcccCCEEEEE
Confidence 47899999999999998773
No 83
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=93.51 E-value=0.81 Score=31.83 Aligned_cols=82 Identities=9% Similarity=-0.061 Sum_probs=51.1
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhh----hhhhhcCCCCccCCHHHH
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLH----ITVSNLFPGAKERTLEEF 84 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~d----l~ml~~~~~g~~Rt~~e~ 84 (96)
-++++-.++..++.+++.++|+.+.+...||+.| ++|.+.+-....... ....... ..+--+. .+ -+..|.
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l-~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~--~~~~~~ 234 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRL-AFDYVRPLDGEWRAG-MRAPVYHAARGVDGSGLV-FG--IDRADV 234 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEE-EEEeccccchhHHHH-HHHHHHHhhhcccccccc-cC--CChhhH
Confidence 5677788999999999999999999887777665 467665421111000 0011110 0111111 22 356899
Q ss_pred HHHHHhhCcCC
Q 034380 85 KSLAIGLLNSV 95 (96)
Q Consensus 85 ~~l~~~AG~~v 95 (96)
.++|++.||++
T Consensus 235 ~~~l~~~Gw~~ 245 (260)
T TIGR00027 235 AEWLAERGWRA 245 (260)
T ss_pred HHHHHHCCCee
Confidence 99999999986
No 84
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.49 E-value=0.36 Score=32.92 Aligned_cols=60 Identities=8% Similarity=-0.092 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHHHhhCcCC
Q 034380 21 GDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 21 ~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
....+.+.-+.+.++|+|||.++|.|.......... | +..-.-++.+-..+-.+.+||++
T Consensus 141 ~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------d------t~~~~ri~~a~V~a~veaaGFkl 200 (238)
T COG4798 141 HPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------D------TITLHRIDPAVVIAEVEAAGFKL 200 (238)
T ss_pred CcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------h------hhhhcccChHHHHHHHHhhccee
Confidence 367788999999999999999999999887643211 1 01122334455666667777653
No 85
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.41 E-value=0.13 Score=37.91 Aligned_cols=43 Identities=2% Similarity=-0.022 Sum_probs=38.6
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
|.+.|..++--.++++..++++.+.++++|||||+.=-...+.
T Consensus 297 ~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 297 DRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred eEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 9999999999999999999999999999999999887665443
No 86
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.16 E-value=0.083 Score=38.95 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=35.3
Q ss_pred CCCcceEeEecccccCCChHH----HHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 4 EVPKAQTIFMKWVLHDWGDDL----CLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 4 ~~P~~D~~ll~~vlh~~~d~~----~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
++|.+|.|.+.-++|..-.+. ....+++.-+.+.|||.++|+|.-.+
T Consensus 179 ~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 179 SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 567778877766655554444 44489999999999999999997555
No 87
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=92.96 E-value=0.2 Score=35.19 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=31.4
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
.|++.+-|+|-.-.+. ..+|+.++++|+|+|+++|.=
T Consensus 152 fDvIscLNvLDRc~~P--~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 152 FDVISCLNVLDRCDRP--LTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred eEEEeehhhhhccCCH--HHHHHHHHHHhCCCCEEEEEE
Confidence 4999999999777665 899999999999988877653
No 88
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=92.78 E-value=0.19 Score=29.83 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=25.8
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
.|++++.... ....++++++++.|+|||++++.
T Consensus 89 ~D~v~~~~~~-----~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSG-----GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcc-----hhHHHHHHHHHHHcCCCCEEEEE
Confidence 5888775533 34468999999999999998874
No 89
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=92.50 E-value=0.28 Score=35.77 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=32.1
Q ss_pred CcceEeEecccccC--CChHHHHHHHHHHHHhCCCCCEEE
Q 034380 6 PKAQTIFMKWVLHD--WGDDLCLKILKNCYDALPEPGKII 43 (96)
Q Consensus 6 P~~D~~ll~~vlh~--~~d~~~~~lL~~~~~al~~gg~l~ 43 (96)
|+.|++-++-++|. -+.+.+..+|+|+++.|+|||-.|
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 45699999999996 356777888999999999999765
No 90
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=92.47 E-value=0.12 Score=37.33 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=31.7
Q ss_pred eEeEecccccCC--ChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380 9 QTIFMKWVLHDW--GDDLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 9 D~~ll~~vlh~~--~d~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
|++-+.-.+|.- +.+.+..+|+++.+.|+|||.+|..
T Consensus 147 DvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 147 DVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp EEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999999973 6777888999999999999998864
No 91
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=91.94 E-value=0.21 Score=34.09 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=30.1
Q ss_pred CCCcc--eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380 4 EVPKA--QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI 48 (96)
Q Consensus 4 ~~P~~--D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~ 48 (96)
|++.. |+++++-.|..=+ ....|+.+.+.|+|||.+.|.|..
T Consensus 117 PL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cCCCCceeEEEEEhhhhCCC---cHHHHHHHHheeccCcEEEEEEec
Confidence 44543 9999888776654 467899999999999999999963
No 92
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=91.54 E-value=0.44 Score=33.34 Aligned_cols=46 Identities=13% Similarity=0.337 Sum_probs=37.7
Q ss_pred CCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 4 EVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 4 ~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
+++..|+++++++|...++++-.++++++.+.+.+ .|||+|.-.+.
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 34456999999999999998888899998877655 89999975554
No 93
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=91.08 E-value=0.3 Score=32.05 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=25.3
Q ss_pred cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
+.|+++... +|+++ .+++.+++.|+|||++++..
T Consensus 109 ~fD~I~s~~-~~~~~-----~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 109 QFDVITSRA-LASLN-----VLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred CccEEEehh-hhCHH-----HHHHHHHHhcCCCCEEEEEc
Confidence 359887654 55443 46788899999999999874
No 94
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=90.45 E-value=0.5 Score=30.75 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=26.9
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
.|++++....+++ ..+++.+.+.|+|||++++...
T Consensus 98 ~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 98 ADAIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CCEEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEe
Confidence 5998887655433 4688999999999999987554
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=90.16 E-value=1.4 Score=28.10 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCCCEEEEEe
Q 034380 25 CLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I~e 46 (96)
...+++++.+.|+|||.+++.-
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEE
Confidence 4678999999999999988764
No 96
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=89.91 E-value=0.77 Score=32.48 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=33.9
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEE-EeeecC
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIV-VESIMP 50 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I-~e~~~~ 50 (96)
=.+++...|.|+++++|..+|.+++.+|+||-.+++ +|...+
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 456778899999999999999999999999966555 444433
No 97
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=89.86 E-value=0.76 Score=30.28 Aligned_cols=32 Identities=19% Similarity=0.481 Sum_probs=24.7
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIV 44 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I 44 (96)
.|++++.. +..+...+++.+.+.|+|||++++
T Consensus 112 ~D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 112 FDRIFIGG-----GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCEEEECC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence 58777632 334567899999999999999986
No 98
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.26 E-value=1.8 Score=30.79 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=33.8
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
-+.++-.++..++.++..++|+++.+..+||++++....
T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 467788899999999999999999999888888776554
No 99
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=89.19 E-value=1.3 Score=29.66 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=28.1
Q ss_pred ceEeEecccccCCChH---------HHHHHHHHHHHhCCCCCEEEEEee
Q 034380 8 AQTIFMKWVLHDWGDD---------LCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~---------~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
.|+++..-..|-.++. .+..+|+.+.+.|+|||.++|...
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 4887765444433321 135789999999999999999754
No 100
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=89.01 E-value=0.86 Score=31.52 Aligned_cols=81 Identities=20% Similarity=0.131 Sum_probs=44.1
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCC-CCEEEEEeeecCCCCC-CchhhhhhhhhhhhhhhcCCCCccCCHH--HH
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPE-PGKIIVVESIMPEFPE-TDIISKNISRLHITVSNLFPGAKERTLE--EF 84 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~-gg~l~I~e~~~~~~~~-~~~~~~~~~~~dl~ml~~~~~g~~Rt~~--e~ 84 (96)
|++.+-++|..-.+. .++|+.++.+++| +|++|+. .++|-.+- +...+....--| +.+ .. +||.+.++ .+
T Consensus 171 dli~clNlLDRc~~p--~kLL~Di~~vl~psngrviva-LVLP~~hYVE~N~~g~~~rPd-n~L-e~-~Gr~~ee~v~~~ 244 (288)
T KOG3987|consen 171 DLILCLNLLDRCFDP--FKLLEDIHLVLAPSNGRVIVA-LVLPYMHYVETNTSGLPLRPD-NLL-EN-NGRSFEEEVARF 244 (288)
T ss_pred ehHHHHHHHHhhcCh--HHHHHHHHHHhccCCCcEEEE-EEecccceeecCCCCCcCCch-HHH-Hh-cCccHHHHHHHH
Confidence 666666666554443 7999999999999 6777654 33442110 000000000001 112 22 67644332 35
Q ss_pred HHHHHhhCcCC
Q 034380 85 KSLAIGLLNSV 95 (96)
Q Consensus 85 ~~l~~~AG~~v 95 (96)
-++|+++|++|
T Consensus 245 ~e~lr~~g~~v 255 (288)
T KOG3987|consen 245 MELLRNCGYRV 255 (288)
T ss_pred HHHHHhcCchh
Confidence 67899999987
No 101
>PTZ00146 fibrillarin; Provisional
Probab=88.81 E-value=2.2 Score=30.47 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=25.7
Q ss_pred cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380 7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
..|++++... ..++...++.+++..|+|||.++|.
T Consensus 202 ~vDvV~~Dva----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 202 MVDVIFADVA----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCCEEEEeCC----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 3588876653 2335566777899999999999994
No 102
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=88.67 E-value=1 Score=29.00 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=30.8
Q ss_pred CCCCC-c-ceEeEecccccCCCh---HHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 2 FVEVP-K-AQTIFMKWVLHDWGD---DLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 2 F~~~P-~-~D~~ll~~vlh~~~d---~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
|++++ . .|+++.-==+|.-.+ +-..++++.+++.|+|||+++++-.
T Consensus 91 ~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 91 FEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 45555 2 488777433444443 4578999999999999999976544
No 103
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=88.46 E-value=0.74 Score=30.57 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEEe
Q 034380 25 CLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I~e 46 (96)
...+|+++++.|+|||.++|..
T Consensus 135 ~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 135 QPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CHHHHHHHHHHcCCCCEEEEEc
Confidence 4678999999999999999864
No 104
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=88.46 E-value=0.97 Score=29.94 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=26.6
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
.|+++...+ . ....+++.+++.|+|||++++++.
T Consensus 113 fDlV~~~~~-~-----~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 113 FDVVTSRAV-A-----SLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ccEEEEccc-c-----CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 598887542 2 246789999999999999998864
No 105
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=87.64 E-value=0.42 Score=33.40 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=48.9
Q ss_pred CCc-ceEeEecccccCC--ChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCH
Q 034380 5 VPK-AQTIFMKWVLHDW--GDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTL 81 (96)
Q Consensus 5 ~P~-~D~~ll~~vlh~~--~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~ 81 (96)
+|+ +|+++...+|--- +.++-.+.|+|+.+.|+|||.+++....-... ...+ . ..+ ..-.-+.
T Consensus 155 ~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~---Y~vG--~--~~F-------~~l~l~e 220 (256)
T PF01234_consen 155 LPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY---YMVG--G--HKF-------PCLPLNE 220 (256)
T ss_dssp S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE---EEET--T--EEE-------E---B-H
T ss_pred CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee---EEEC--C--Eec-------ccccCCH
Confidence 565 7998887766433 35567899999999999999999988733210 0000 0 000 1223467
Q ss_pred HHHHHHHHhhCcCC
Q 034380 82 EEFKSLAIGLLNSV 95 (96)
Q Consensus 82 ~e~~~l~~~AG~~v 95 (96)
+..++-+++||+.|
T Consensus 221 e~v~~al~~aG~~i 234 (256)
T PF01234_consen 221 EFVREALEEAGFDI 234 (256)
T ss_dssp HHHHHHHHHTTEEE
T ss_pred HHHHHHHHHcCCEE
Confidence 88899999999875
No 106
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=87.17 E-value=0.61 Score=30.71 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCCCEEEEEe
Q 034380 26 LKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e 46 (96)
..+++.+++.|+|||.+++.-
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEe
Confidence 468999999999999997754
No 107
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=84.55 E-value=1.9 Score=29.59 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=27.4
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
.|+++. +...+....+++.+.+.|+|||.+++.+....
T Consensus 180 fD~Vva-----ni~~~~~~~l~~~~~~~LkpgG~lilsgi~~~ 217 (250)
T PRK00517 180 ADVIVA-----NILANPLLELAPDLARLLKPGGRLILSGILEE 217 (250)
T ss_pred cCEEEE-----cCcHHHHHHHHHHHHHhcCCCcEEEEEECcHh
Confidence 466653 23334457889999999999999999866543
No 108
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=84.06 E-value=3 Score=28.51 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 034380 25 CLKILKNCYDALPEPGKIIV 44 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I 44 (96)
..++++++.+.|+|||.+++
T Consensus 217 ~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 217 YRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred HHHHHHHHHHhcccCCEEEE
Confidence 36789999999999999887
No 109
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=83.01 E-value=3.2 Score=29.67 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=29.8
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
.|+.+++-.|..=+ ...+++.+.+.|++||.+.|.|.
T Consensus 229 vDvaV~CLSLMgtn---~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 229 VDVAVFCLSLMGTN---LADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred ccEEEeeHhhhccc---HHHHHHHHHHHhccCceEEEEeh
Confidence 48887777665543 46789999999999999999995
No 110
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=82.93 E-value=1.6 Score=29.00 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=23.6
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
.|++++...++..++ .+.+.|+|||++++.
T Consensus 143 fD~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 143 FDAIIVTAAASTIPS--------ALVRQLKDGGVLVIP 172 (205)
T ss_pred ccEEEEccCcchhhH--------HHHHhcCcCcEEEEE
Confidence 499999888876653 466789999999874
No 111
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=82.88 E-value=3.1 Score=27.79 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=30.4
Q ss_pred eEeEecccccCCCh----------HHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 9 QTIFMKWVLHDWGD----------DLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 9 D~~ll~~vlh~~~d----------~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
|++.+-+.|||++- +.-.++.+++++.|+|+ .++|.-...|
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~-allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIE-CLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCc-cEEEEecCCC
Confidence 99999999999986 44557777777778777 4555555444
No 112
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=82.81 E-value=2.5 Score=29.34 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=26.4
Q ss_pred ceEeEecccccCCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 034380 8 AQTIFMKWVLHDWGDDL--CLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~--~~~lL~~~~~al~~gg~l~I~ 45 (96)
.|++++-..-+.-+... ..++++++++.|+|||.+++.
T Consensus 146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred ccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 48887754422222222 468899999999999999886
No 113
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=82.72 E-value=2 Score=27.92 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCCCEEEEE
Q 034380 25 CLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I~ 45 (96)
..++|+++.+.|+|||+++|.
T Consensus 125 ~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 125 VELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHHHHHHHHHHccCCCEEEEE
Confidence 367899999999999999985
No 114
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=82.41 E-value=2.1 Score=30.74 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380 24 LCLKILKNCYDALPEPGKIIVVESIMPEF 52 (96)
Q Consensus 24 ~~~~lL~~~~~al~~gg~l~I~e~~~~~~ 52 (96)
+..+.|+.+.+.|+||||++|+-+.--++
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 34678999999999999999998754444
No 115
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=82.09 E-value=0.83 Score=34.88 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=38.5
Q ss_pred CCCc-c-eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 4 EVPK-A-QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 4 ~~P~-~-D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
|+|. + |.+-+++++..|...+. .+|-.+-+.|+|||-++..-.-..
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~g-~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPNDG-FLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cCCccchhhhhcccccccchhccc-ceeehhhhhhccCceEEecCCccc
Confidence 4565 4 99999999999999985 588889999999999888776555
No 116
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=82.01 E-value=4.4 Score=23.29 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=30.9
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
.|++ .....+++.+ ....++.+.+.++|+|.+++.+.....
T Consensus 120 ~d~~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 120 FDLV-ISLLVLHLLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eeEE-eeeeehhcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 3888 5555544444 678899999999999999998876554
No 117
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=81.85 E-value=2.1 Score=29.10 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=33.2
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
.|+++=+..++-.+++.-.+-.+++++.|+|||+++++
T Consensus 117 fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 117 FDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp EEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 39999999999999999999999999999999994443
No 118
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=80.99 E-value=2.9 Score=27.93 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=22.9
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
.|++++....++.+ +.+.+.|+|||++++.-
T Consensus 146 fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 146 YDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 49999877665544 34566899999998853
No 119
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=80.08 E-value=2.8 Score=29.90 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380 23 DLCLKILKNCYDALPEPGKIIVVESIMPEF 52 (96)
Q Consensus 23 ~~~~~lL~~~~~al~~gg~l~I~e~~~~~~ 52 (96)
++-.++|..+.+.|+|||+++|+-+.--++
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlED 242 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLED 242 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 345678999999999999999998765554
No 120
>PRK07402 precorrin-6B methylase; Provisional
Probab=80.04 E-value=2.9 Score=27.39 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380 24 LCLKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 24 ~~~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
...++++++.+.|+|||++++.....
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 45789999999999999999987543
No 121
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=79.76 E-value=3.5 Score=30.61 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCCCEEEEEe
Q 034380 26 LKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e 46 (96)
..+|+.+++.|+|||.+.+.-
T Consensus 215 ~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 215 EDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred HHHHHHHHHHcCCCcEEEEEE
Confidence 578999999999999998754
No 122
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=79.55 E-value=3.7 Score=28.79 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=27.7
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
.|+++.. ++ -+...++++++.+.|+|||.+++.....
T Consensus 226 fDlVvan-~~----~~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 226 ADVIVAN-IL----AEVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred ceEEEEe-cC----HHHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 4888653 32 2345688999999999999999987643
No 123
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=79.26 E-value=3.2 Score=29.93 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380 24 LCLKILKNCYDALPEPGKIIVVESIMPEF 52 (96)
Q Consensus 24 ~~~~lL~~~~~al~~gg~l~I~e~~~~~~ 52 (96)
+..+.|..+.+.|+||||++|+-+.--++
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIsFHSLED 250 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVISFHSLED 250 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEecchHH
Confidence 45678999999999999999998765444
No 124
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=78.13 E-value=2.9 Score=29.07 Aligned_cols=80 Identities=19% Similarity=0.114 Sum_probs=51.0
Q ss_pred cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhh------hhh----cCCCC
Q 034380 7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHIT------VSN----LFPGA 76 (96)
Q Consensus 7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~------ml~----~~~~g 76 (96)
..|+++--.+||=.+|. .++|.+....|.|||.|.|. +|++.+.|.. ..+.+.. ... .+ .+
T Consensus 92 ~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQ---mPdN~depsH---~~mr~~A~~~p~~~~l~~~~~~-r~ 162 (257)
T COG4106 92 PTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQ---MPDNLDEPSH---RLMRETADEAPFAQELGGRGLT-RA 162 (257)
T ss_pred ccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEE---CCCccCchhH---HHHHHHHhcCchhhhhCccccc-cC
Confidence 35888888899988886 88999999999999999775 3444333311 1111111 111 11 33
Q ss_pred ccCCHHHHHHHHHhhCcCC
Q 034380 77 KERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 77 ~~Rt~~e~~~l~~~AG~~v 95 (96)
..-|...|-++|...+-+|
T Consensus 163 ~v~s~a~Yy~lLa~~~~rv 181 (257)
T COG4106 163 PLPSPAAYYELLAPLACRV 181 (257)
T ss_pred CCCCHHHHHHHhCccccee
Confidence 4557788888887766544
No 125
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=78.07 E-value=2.8 Score=28.96 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCCCEEEEEe
Q 034380 28 ILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 28 lL~~~~~al~~gg~l~I~e 46 (96)
.++.+++.|+|||+++++.
T Consensus 163 ~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 163 KAEELARVVKPGGIVITVT 181 (272)
T ss_pred CHHHHHhhccCCCEEEEEe
Confidence 3678889999999999875
No 126
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=77.99 E-value=3.3 Score=29.60 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=33.1
Q ss_pred ceEeEecccccCCChHHH-HHHHHHHHHhCCCCCEEEEEe
Q 034380 8 AQTIFMKWVLHDWGDDLC-LKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~-~~lL~~~~~al~~gg~l~I~e 46 (96)
.|..+-..++|+|+...- .++++.+.+.++|||..+|.=
T Consensus 104 ~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 104 FDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 488899999999987654 478999999999999977764
No 127
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=77.15 E-value=5 Score=27.04 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=26.9
Q ss_pred CcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 034380 6 PKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFP 53 (96)
Q Consensus 6 P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~ 53 (96)
.+||++++-+.+ |+++...+| .+....|++|.+||-...+.+...
T Consensus 121 s~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G~~IIs~~~~~~~~~ 165 (205)
T PF08123_consen 121 SDADVVFVNNTC--FDPDLNLAL-AELLLELKPGARIISTKPFCPRRR 165 (205)
T ss_dssp HC-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT-EEEESS-SS-TT-
T ss_pred cCCCEEEEeccc--cCHHHHHHH-HHHHhcCCCCCEEEECCCcCCCCc
Confidence 357999998875 666655555 666778999999998887777654
No 128
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=76.72 E-value=5.6 Score=26.30 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=23.6
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
.|++++...+++. .+.+.+.|+|||++++.-.
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 4988887766544 4456789999999988643
No 129
>PRK00811 spermidine synthase; Provisional
Probab=76.03 E-value=6.7 Score=27.51 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=24.9
Q ss_pred ceEeEecccccCCChH--HHHHHHHHHHHhCCCCCEEEEE
Q 034380 8 AQTIFMKWVLHDWGDD--LCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~--~~~~lL~~~~~al~~gg~l~I~ 45 (96)
.|++++-..-+.-+.. -..++++.|++.|+|||.+++.
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 4888764322211111 1367899999999999998764
No 130
>PRK04457 spermidine synthase; Provisional
Probab=76.02 E-value=3.3 Score=28.74 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=25.7
Q ss_pred ceEeEeccccc--CCChHH-HHHHHHHHHHhCCCCCEEEEE
Q 034380 8 AQTIFMKWVLH--DWGDDL-CLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 8 ~D~~ll~~vlh--~~~d~~-~~~lL~~~~~al~~gg~l~I~ 45 (96)
.|++++-. .+ ..+... ..+++++|++.|+|||.++|.
T Consensus 137 yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 137 TDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 48887742 22 122211 379999999999999999884
No 131
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=75.48 E-value=2.2 Score=26.47 Aligned_cols=21 Identities=29% Similarity=0.196 Sum_probs=19.7
Q ss_pred CCccCCHHHHHHHHHhhCcCC
Q 034380 75 GAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~~v 95 (96)
.+..+|.++.+.++++|||+|
T Consensus 92 ~S~Ky~~~~~~~l~~~aGl~~ 112 (127)
T PF10017_consen 92 NSYKYSPEEFEALAEQAGLEV 112 (127)
T ss_pred EeeCcCHHHHHHHHHHCCCee
Confidence 688999999999999999986
No 132
>PRK14967 putative methyltransferase; Provisional
Probab=74.90 E-value=5.8 Score=26.55 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeec
Q 034380 25 CLKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
..++++++.+.|+|||+++++..-.
T Consensus 138 ~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 138 LDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4568889999999999999876544
No 133
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=74.73 E-value=6.1 Score=27.36 Aligned_cols=33 Identities=15% Similarity=0.465 Sum_probs=24.1
Q ss_pred CCChHHH-------HHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 19 DWGDDLC-------LKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 19 ~~~d~~~-------~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
.|++++. .++|+++.+.++|||+|+..-..+..
T Consensus 165 ~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 165 NWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 4666555 46999999999999998766544443
No 134
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=74.55 E-value=3.7 Score=27.48 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=29.8
Q ss_pred CCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 4 EVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 4 ~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
++|+.|++++.-- .....+|+.|...|+|||||++-=..++
T Consensus 99 ~~~~~daiFIGGg------~~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 99 DLPSPDAIFIGGG------GNIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred CCCCCCEEEECCC------CCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 3444577776554 2246789999999999999988666555
No 135
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=74.01 E-value=2.4 Score=30.52 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 23 DLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 23 ~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
+.-...|.++.+.|+|||+++|+-+.--
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSL 245 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSL 245 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecch
Confidence 3456789999999999999999986543
No 136
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=73.73 E-value=8.7 Score=27.41 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 23 DLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 23 ~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
+-..++|+.+++.|+|||+++++-
T Consensus 271 ~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 271 SLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEE
Confidence 445789999999999999998864
No 137
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=73.33 E-value=4.6 Score=29.93 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 034380 26 LKILKNCYDALPEPGKIIVVESIMPEFP 53 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~~~~~~~ 53 (96)
.++|+++.+.|+|||++++...-+....
T Consensus 348 ~~lL~~a~~~LkpgG~lvystcs~~~~E 375 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYATCSVLPEE 375 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 6799999999999999999987665443
No 138
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=72.75 E-value=5.2 Score=26.63 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=21.9
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
.|++++....+.. .+.+.+.|+|||++++.
T Consensus 147 fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 147 YDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 4888877654443 45567789999998875
No 139
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=72.74 E-value=4.2 Score=28.52 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=29.0
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCCCC-EEEEEeee
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPG-KIIVVESI 48 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg-~l~I~e~~ 48 (96)
|++....++|=|+- .++.+.+++.|++.| .++|.-+.
T Consensus 102 DlI~~Aqa~HWFdl---e~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 102 DLITAAQAVHWFDL---ERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred eeehhhhhHHhhch---HHHHHHHHHHcCCCCCEEEEEEcc
Confidence 99999999998886 567788888899855 66665544
No 140
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=72.17 E-value=4.8 Score=28.28 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=27.6
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 16 VLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 16 vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
++=|.+|. .+.|.++.++|+|||.++++-++.+
T Consensus 167 v~LDmp~P--W~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 167 VFLDLPDP--WNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred EEEcCCCh--HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 44478876 7889999999999999999877665
No 141
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=72.11 E-value=5.3 Score=30.32 Aligned_cols=31 Identities=19% Similarity=0.520 Sum_probs=23.6
Q ss_pred ccCCChHHH-------HHHHHHHHHhCCCCCEEEEEeee
Q 034380 17 LHDWGDDLC-------LKILKNCYDALPEPGKIIVVESI 48 (96)
Q Consensus 17 lh~~~d~~~-------~~lL~~~~~al~~gg~l~I~e~~ 48 (96)
...|+.++. .+||.++.+.|+|||+| |+-.+
T Consensus 206 ~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~L-VYSTC 243 (470)
T PRK11933 206 LKNWSPESNLEIAATQRELIESAFHALKPGGTL-VYSTC 243 (470)
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEE-EEECC
Confidence 445777666 68999999999999987 55543
No 142
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=71.88 E-value=6.2 Score=28.34 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=24.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 19 DWGDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
+-.+.-+.+|++..++.|++||.|.|+=.
T Consensus 239 ~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 239 AVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred chhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 44555667999999999999999998876
No 143
>PRK01581 speE spermidine synthase; Validated
Probab=71.57 E-value=4.3 Score=30.03 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEE
Q 034380 25 CLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I~ 45 (96)
..++++.|++.|+|||.+++.
T Consensus 247 T~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 247 TSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHHHHHhcCCCcEEEEe
Confidence 367899999999999998876
No 144
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=70.66 E-value=2.8 Score=24.65 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=25.9
Q ss_pred ceEeEecccccCCC------hHHHHHHHHHHHHhCCCCCEEEEE
Q 034380 8 AQTIFMKWVLHDWG------DDLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 8 ~D~~ll~~vlh~~~------d~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
.|+++..--.+... .+...++++++.+.|+|||.++++
T Consensus 71 ~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 71 FDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 47777754444322 123468899999999999998875
No 145
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=69.63 E-value=5.2 Score=29.73 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380 26 LKILKNCYDALPEPGKIIVVESIMPEF 52 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~~~~~~ 52 (96)
.++|+++.+.++|||+++.....+...
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~~ 390 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHPA 390 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 588999999999999999887555433
No 146
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=69.38 E-value=3.8 Score=28.92 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=19.5
Q ss_pred CCccCCHHHHHHHHHhhCcCC
Q 034380 75 GAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~~v 95 (96)
+++.+|.++++.++++|||++
T Consensus 265 ~S~ky~~~~~~~~l~~aGf~~ 285 (301)
T TIGR03438 265 NSYKFSLERFAALAAAAGLRP 285 (301)
T ss_pred EecCCCHHHHHHHHHHCCCce
Confidence 678999999999999999986
No 147
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=68.74 E-value=7.3 Score=28.19 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 22 DDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 22 d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
-.+..++|.+.-+.++||..++|+|.
T Consensus 218 ~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 218 ISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred hHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 34568999999999999999999996
No 148
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=68.74 E-value=7.9 Score=28.90 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380 27 KILKNCYDALPEPGKIIVVESIMPEF 52 (96)
Q Consensus 27 ~lL~~~~~al~~gg~l~I~e~~~~~~ 52 (96)
++|+++.+.++|||+++.....+...
T Consensus 358 ~iL~~a~~~lkpgG~lvystcs~~~~ 383 (445)
T PRK14904 358 ELLDHAASLLKPGGVLVYATCSIEPE 383 (445)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 68999999999999999988655533
No 149
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=67.62 E-value=5.7 Score=29.39 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 034380 26 LKILKNCYDALPEPGKIIVVESIMPEFP 53 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~~~~~~~ 53 (96)
.+||++..+.|++||+++=.---+++..
T Consensus 276 ~~iL~rgl~lLk~GG~lVYSTCSLnpie 303 (375)
T KOG2198|consen 276 LRILRRGLRLLKVGGRLVYSTCSLNPIE 303 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCCCchh
Confidence 5899999999999999976655555443
No 150
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.75 E-value=11 Score=21.58 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCCCCcc-eEeEeccccc--CCChHHHHHHHHHHHHhCCCCC
Q 034380 2 FVEVPKA-QTIFMKWVLH--DWGDDLCLKILKNCYDALPEPG 40 (96)
Q Consensus 2 F~~~P~~-D~~ll~~vlh--~~~d~~~~~lL~~~~~al~~gg 40 (96)
|+.+|+| |- ++-+++ ++.++.-.++++++.+.+.|+.
T Consensus 32 ~Eh~PSGID~--~Siii~~~~~~~~~~~~i~~~i~~~~~pD~ 71 (76)
T cd04911 32 YEHMPSGIDD--ISIIIRDNQLTDEKEQKILAEIKEELHPDE 71 (76)
T ss_pred EeeecCCCcc--EEEEEEccccchhhHHHHHHHHHHhcCCCE
Confidence 3567887 54 333333 3445577889999999999873
No 151
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=66.60 E-value=28 Score=23.36 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=37.4
Q ss_pred cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380 7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI 48 (96)
Q Consensus 7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~ 48 (96)
..|+++..-=+-++|-...++||+.+..-+++||.++-+-+-
T Consensus 117 ~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 117 FFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 358888888888999999999999999999999999888775
No 152
>PLN02366 spermidine synthase
Probab=66.00 E-value=7.2 Score=27.91 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCCCCEEEEE
Q 034380 25 CLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I~ 45 (96)
..++++.|++.|+|||.+++.
T Consensus 185 t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 185 EKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHHHHHHHHhcCCCcEEEEC
Confidence 457899999999999998763
No 153
>PRK03612 spermidine synthase; Provisional
Probab=65.64 E-value=6 Score=30.27 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 034380 26 LKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~ 45 (96)
.++++++++.|+|||.+++.
T Consensus 395 ~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 395 VEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred HHHHHHHHHhcCCCeEEEEe
Confidence 46899999999999998874
No 154
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=65.20 E-value=11 Score=25.83 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 23 DLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 23 ~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
..+.++++++.+.++.||.++++|+--+
T Consensus 171 ~~~~~~l~~l~~~~~~~g~~l~iDYG~~ 198 (252)
T PF02636_consen 171 TGALQWLEQLAERLPKGGALLIIDYGYP 198 (252)
T ss_dssp HCHHHHHHHHHHHCCC-EEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEeCCCC
Confidence 3578999999999999899999998663
No 155
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=65.02 E-value=5.7 Score=23.32 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHHHh
Q 034380 23 DLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIG 90 (96)
Q Consensus 23 ~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~~ 90 (96)
+++..+|+-+.+.=..-|...|+|.+........ ....+.-+-...-|+..+..+|++++..
T Consensus 4 ~~a~~il~~V~~~~~~~~~~~ivdvlrGs~~~~i------~~~~~~~l~~yG~gk~~~~~~~~~li~~ 65 (106)
T PF09382_consen 4 EEAKKILSCVQRLKQRFGLSQIVDVLRGSKSKKI------REKGHDQLPTYGIGKDMSKDDWERLIRQ 65 (106)
T ss_dssp HHHHHHHHHHHHTTT-S-HHHHHHHHTT-S-CCC------HHTTGGGSTTTTTTTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHhccchhh------hhcCCCcCcccCCcccCCHHHHHHHHHH
Confidence 4577788877765344466667777665443321 1122333333446899999999999874
No 156
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=64.36 E-value=9.5 Score=28.32 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 26 LKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
.++|+++.+.|+|||++++....+..
T Consensus 352 ~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 352 SEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 47899999999999999988754443
No 157
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=64.34 E-value=27 Score=21.88 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=15.0
Q ss_pred hhhhhhcCCCCccCCHHHHHHHHHhh
Q 034380 66 HITVSNLFPGAKERTLEEFKSLAIGL 91 (96)
Q Consensus 66 dl~ml~~~~~g~~Rt~~e~~~l~~~A 91 (96)
|+.=-+.. +|+.++.++|..+|..+
T Consensus 49 dIs~qv~~-~G~k~~~e~WK~~~~~~ 73 (127)
T PF05772_consen 49 DISRQVEW-NGRKLDPEDWKELFTAA 73 (127)
T ss_dssp HHHHH--B-TTB---HHHHHHHHHHH
T ss_pred HHHHHhHh-cCccCCHHHHHHHHHHH
Confidence 44444444 89999999999999764
No 158
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=63.77 E-value=11 Score=26.87 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCCCCEEEE
Q 034380 24 LCLKILKNCYDALPEPGKIIV 44 (96)
Q Consensus 24 ~~~~lL~~~~~al~~gg~l~I 44 (96)
...++++++.+.|+|||++++
T Consensus 241 ~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 241 LVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred HHHHHHHHHHHhcCCCCEEEE
Confidence 347889999999999999876
No 159
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=62.82 E-value=12 Score=26.33 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCCCEEEEEee
Q 034380 25 CLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
..++++.+.+.|+|||+++ +|.
T Consensus 230 ~~~il~~a~~~L~~gG~l~-~e~ 251 (284)
T TIGR03533 230 VRRILAEAADHLNENGVLV-VEV 251 (284)
T ss_pred HHHHHHHHHHhcCCCCEEE-EEE
Confidence 4788999999999999876 454
No 160
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=61.12 E-value=14 Score=27.60 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeec
Q 034380 26 LKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
.++|+++.+.|+|||+++..-..+
T Consensus 359 ~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 359 LEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCCC
Confidence 568999999999999998654433
No 161
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=60.02 E-value=12 Score=27.97 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380 26 LKILKNCYDALPEPGKIIVVESIMPEF 52 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~~~~~~ 52 (96)
.++|.++.+.|+|||.++..-..+...
T Consensus 346 ~~iL~~a~~~LkpGG~LvYsTCs~~~e 372 (431)
T PRK14903 346 LRIVSQAWKLLEKGGILLYSTCTVTKE 372 (431)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCChh
Confidence 577999999999999976655444433
No 162
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=59.58 E-value=17 Score=23.39 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 22 DDLCLKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 22 d~~~~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
.+++.-+|..+.+.|++||.|+|+-.....
T Consensus 81 K~e~~~lL~~l~~~L~~g~~i~vVGEnk~G 110 (155)
T PF08468_consen 81 KAEAQYLLANLLSHLPPGTEIFVVGENKGG 110 (155)
T ss_dssp HHHHHHHHHHHHTTS-TT-EEEEEEEGGGT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEecCccc
Confidence 455677899999999999999998765443
No 163
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=59.20 E-value=6.9 Score=28.22 Aligned_cols=22 Identities=14% Similarity=-0.059 Sum_probs=20.2
Q ss_pred CCccCCHHHHHHHHHhhCcCCC
Q 034380 75 GAKERTLEEFKSLAIGLLNSVK 96 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~~v~ 96 (96)
++..+|.++++.++++|||+|.
T Consensus 284 ~S~Kyt~~~~~~l~~~aG~~~~ 305 (319)
T TIGR03439 284 CSGKYDKDEREKLCQSAGLKVV 305 (319)
T ss_pred eeeCCCHHHHHHHHHHCCCeee
Confidence 7889999999999999999873
No 164
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=58.20 E-value=9.8 Score=26.21 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.3
Q ss_pred HhCCCCCEEEEEeeecCCCC
Q 034380 34 DALPEPGKIIVVESIMPEFP 53 (96)
Q Consensus 34 ~al~~gg~l~I~e~~~~~~~ 53 (96)
.++.+|.+++|+|.++....
T Consensus 171 ~~l~~G~rVLIVDDvi~TG~ 190 (238)
T PRK08558 171 SALKKGDRVLIVDDIIRSGE 190 (238)
T ss_pred HHcCCcCEEEEEecccccCH
Confidence 46889999999999999764
No 165
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=58.14 E-value=33 Score=25.38 Aligned_cols=45 Identities=13% Similarity=0.122 Sum_probs=31.3
Q ss_pred CCCCcc-eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 3 VEVPKA-QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 3 ~~~P~~-D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
+++|.+ |+++++.== +-+.....|..+++.++||+.|++-+....
T Consensus 101 ~~~~~~~d~vl~~~PK---~~~~l~~~l~~l~~~l~~~~~ii~g~~~k~ 146 (378)
T PRK15001 101 ADYPQQPGVVLIKVPK---TLALLEQQLRALRKVVTSDTRIIAGAKARD 146 (378)
T ss_pred ccccCCCCEEEEEeCC---CHHHHHHHHHHHHhhCCCCCEEEEEEecCC
Confidence 456664 877775311 124567889999999999999887776543
No 166
>PF13592 HTH_33: Winged helix-turn helix
Probab=57.90 E-value=10 Score=20.17 Aligned_cols=22 Identities=14% Similarity=-0.176 Sum_probs=19.5
Q ss_pred CCccCCHHHHHHHHHhhCcCCC
Q 034380 75 GAKERTLEEFKSLAIGLLNSVK 96 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~~v~ 96 (96)
-|..+|......||.+.||+-+
T Consensus 18 fgv~ys~~~v~~lL~r~G~s~~ 39 (60)
T PF13592_consen 18 FGVKYSPSGVYRLLKRLGFSYQ 39 (60)
T ss_pred HCCEEcHHHHHHHHHHcCCccc
Confidence 5889999999999999998753
No 167
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=57.76 E-value=19 Score=27.59 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=32.5
Q ss_pred ceEeEecccccCCChHHHH--HHHHHHHHhCCCCCEEEEEeeecC
Q 034380 8 AQTIFMKWVLHDWGDDLCL--KILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~--~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
.|++++.+++|..+...-+ ..-+.++++.++|+.++|+|.-..
T Consensus 275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 4999999999988766522 224556688899999999996443
No 168
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=57.56 E-value=22 Score=23.98 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=51.0
Q ss_pred CCCc-c-eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC----------CCCCCchhhhh-hhhhhhhhh
Q 034380 4 EVPK-A-QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP----------EFPETDIISKN-ISRLHITVS 70 (96)
Q Consensus 4 ~~P~-~-D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~----------~~~~~~~~~~~-~~~~dl~ml 70 (96)
.+|. . |.++|++.|...... .++|+.+.+ -|.+.+|.=+... ..+. |..... ..++|
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~P--~~vL~EmlR---Vgr~~IVsFPNFg~W~~R~~l~~~Grm-Pvt~~lPy~WYd---- 139 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRRP--DEVLEEMLR---VGRRAIVSFPNFGHWRNRLQLLLRGRM-PVTKALPYEWYD---- 139 (193)
T ss_pred hCCCCCccEEehHhHHHhHhHH--HHHHHHHHH---hcCeEEEEecChHHHHHHHHHHhcCCC-CCCCCCCCcccC----
Confidence 3564 3 999999999998775 555776644 4666666553322 0000 100000 12333
Q ss_pred hcCCCCccCCHHHHHHHHHhhCcCC
Q 034380 71 NLFPGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 71 ~~~~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
|+|=+.=|.++++++.++.|++|
T Consensus 140 --TPNih~~Ti~DFe~lc~~~~i~I 162 (193)
T PF07021_consen 140 --TPNIHLCTIKDFEDLCRELGIRI 162 (193)
T ss_pred --CCCcccccHHHHHHHHHHCCCEE
Confidence 66888999999999999999876
No 169
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=57.00 E-value=10 Score=19.34 Aligned_cols=18 Identities=17% Similarity=-0.045 Sum_probs=14.5
Q ss_pred ccCCHHHHHHHHHhhCcC
Q 034380 77 KERTLEEFKSLAIGLLNS 94 (96)
Q Consensus 77 ~~Rt~~e~~~l~~~AG~~ 94 (96)
-..=..||+++|..+|+.
T Consensus 24 f~glP~eW~~ll~~sgis 41 (46)
T cd01093 24 FTGLPEEWQRLLKSSGIT 41 (46)
T ss_pred ccCCCHHHHHHHHHcCCC
Confidence 445568999999999975
No 170
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=56.68 E-value=12 Score=28.77 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=35.0
Q ss_pred CCCCCc-ceEeEecccccCCChHHH--HHHHHHHHHhCCCCCEEEEEee
Q 034380 2 FVEVPK-AQTIFMKWVLHDWGDDLC--LKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 2 F~~~P~-~D~~ll~~vlh~~~d~~~--~~lL~~~~~al~~gg~l~I~e~ 47 (96)
|...|. .|++...+++..+.+. | ..||-.+-+-|+|+|.++|-|.
T Consensus 421 fsTYPRTYDLlHA~~lfs~~~~r-C~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 421 FSTYPRTYDLLHADGLFSLYKDR-CEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred cCCCCcchhheehhhhhhhhccc-ccHHHHHHHhHhhcCCCceEEEecc
Confidence 445665 4998888888887754 4 3667888899999999999875
No 171
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=56.64 E-value=19 Score=23.23 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=28.2
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
.|+++.+-++.+ ++....+++-+...++++|.+++.-...
T Consensus 120 ~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 120 FDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp BSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 599999999876 5667888999999999988877666544
No 172
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=56.38 E-value=26 Score=21.34 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHHhCCC----CCEEEEEee
Q 034380 21 GDDLCLKILKNCYDALPE----PGKIIVVES 47 (96)
Q Consensus 21 ~d~~~~~lL~~~~~al~~----gg~l~I~e~ 47 (96)
+|+++.++++.+.++... +|+|+|.+.
T Consensus 66 ~D~~v~~vv~~I~~~a~TG~~GDGkIfV~pV 96 (112)
T PRK10858 66 PDDIVDTCVDTIIRTAQTGKIGDGKIFVFDV 96 (112)
T ss_pred ChHhHHHHHHHHHHHhccCCCCCcEEEEEEh
Confidence 577788888888877776 399999874
No 173
>PRK11524 putative methyltransferase; Provisional
Probab=55.91 E-value=17 Score=25.40 Aligned_cols=20 Identities=15% Similarity=0.506 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 034380 26 LKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~ 45 (96)
..+++.+.+.|+|||.++|.
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 46889999999999999875
No 174
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=55.56 E-value=21 Score=24.52 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 034380 26 LKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~ 45 (96)
.++++.+.+.|+|||++++.
T Consensus 196 ~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 196 RRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 47888888999999988754
No 175
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=55.54 E-value=16 Score=23.03 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=43.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC---------------CCchhhhhhhhhhhhhhhcCCCCccCCHHH
Q 034380 19 DWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFP---------------ETDIISKNISRLHITVSNLFPGAKERTLEE 83 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~---------------~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e 83 (96)
.++++++..+|.+....|..-|.-|++-.-..... .....-....+.|+.--+.. |+.+=|.+|
T Consensus 10 ~L~~~ea~~FL~~~~~~L~~~Gi~V~lP~~w~~~~~~~l~l~~~~~~~~~~~~~~lgl~~l~~f~W~lal-Gd~~Ls~eE 88 (141)
T PF12419_consen 10 ELTTEEAYDFLTEAAPRLRAAGIGVLLPSWWKKVRRPRLRLRAKATSPGGSSQSFLGLDQLLDFDWELAL-GDEELSEEE 88 (141)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCeEEcCHHHhhccCCCcEEEEEeccCCCCCCCccChHHHhcceEEEEE-CCEECCHHH
Confidence 47899999999998888886554444332221110 00000011223333322223 899999999
Q ss_pred HHHHHHhhCc
Q 034380 84 FKSLAIGLLN 93 (96)
Q Consensus 84 ~~~l~~~AG~ 93 (96)
+++|+++..-
T Consensus 89 f~~L~~~~~~ 98 (141)
T PF12419_consen 89 FEQLVEQKRP 98 (141)
T ss_pred HHHHHHcCCC
Confidence 9999997653
No 176
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=52.99 E-value=21 Score=17.18 Aligned_cols=18 Identities=17% Similarity=-0.049 Sum_probs=14.5
Q ss_pred cCCHHHHHHHHHhhCcCC
Q 034380 78 ERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 78 ~Rt~~e~~~l~~~AG~~v 95 (96)
..|..++++||.+.|..+
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 357789999999988765
No 177
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=52.88 E-value=12 Score=23.89 Aligned_cols=31 Identities=23% Similarity=0.136 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380 22 DDLCLKILKNCYDALPEPGKIIVVESIMPEF 52 (96)
Q Consensus 22 d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~ 52 (96)
.+..++-|+.+.+.|+|||.+.|+=+.-.+.
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVVYPGHPG 98 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE--STCH
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEEeCCCCC
Confidence 3456788999999999999999988765543
No 178
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=52.23 E-value=23 Score=24.71 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEee
Q 034380 24 LCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 24 ~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
...++++++.+.|+|||.+ ++|.
T Consensus 222 ~~~~ii~~a~~~L~~gG~l-~~e~ 244 (284)
T TIGR00536 222 ILRQIIELAPDYLKPNGFL-VCEI 244 (284)
T ss_pred HHHHHHHHHHHhccCCCEE-EEEE
Confidence 4568899999999999876 4555
No 179
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=52.03 E-value=12 Score=24.39 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCCCEEEEE
Q 034380 25 CLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I~ 45 (96)
...+++.+.+.|+|||.++|.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 567899999999999998775
No 180
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=51.62 E-value=10 Score=21.97 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 23 DLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 23 ~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
+.+..-++.+.+.|+|||.|++.|
T Consensus 82 ~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 82 EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 556777888888999998877765
No 181
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=51.46 E-value=7.2 Score=18.78 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=14.3
Q ss_pred ccCCHHHHHHHHHhhCc
Q 034380 77 KERTLEEFKSLAIGLLN 93 (96)
Q Consensus 77 ~~Rt~~e~~~l~~~AG~ 93 (96)
++|...-|+.+|-+||.
T Consensus 18 K~rv~kAWRNiFvqagI 34 (34)
T PF13137_consen 18 KYRVDKAWRNIFVQAGI 34 (34)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 57778899999999984
No 182
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=51.39 E-value=36 Score=18.28 Aligned_cols=23 Identities=4% Similarity=0.172 Sum_probs=11.1
Q ss_pred CCCh-HHHHHHHHHHHHhCCCCCEEEEE
Q 034380 19 DWGD-DLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 19 ~~~d-~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
.+++ ++..++++- +..||+|+|.
T Consensus 46 ~~~~~~~~~~l~~~----v~~G~~lvl~ 69 (70)
T PF14258_consen 46 RLSEPEEAEALLEW----VEAGNTLVLA 69 (70)
T ss_pred CCCchHHHHHHHHH----HHcCCEEEEe
Confidence 3553 444444332 2356666664
No 183
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=51.09 E-value=32 Score=23.39 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=25.0
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
.|++++ |-+.+.-...+..+.+.|+|||.|++ |.++
T Consensus 145 fD~Vfi-----Da~k~~y~~~~~~~~~ll~~GG~ii~-dn~l 180 (234)
T PLN02781 145 FDFAFV-----DADKPNYVHFHEQLLKLVKVGGIIAF-DNTL 180 (234)
T ss_pred CCEEEE-----CCCHHHHHHHHHHHHHhcCCCeEEEE-EcCC
Confidence 477665 33445567889999999999997555 4433
No 184
>PRK09902 hypothetical protein; Provisional
Probab=50.22 E-value=18 Score=24.77 Aligned_cols=74 Identities=8% Similarity=0.042 Sum_probs=44.7
Q ss_pred cccccCCChHHHHHHHHHHHHhCCC-------CCEEEEEeeecCCCCC------------CchhhhhhhhhhhhhhhcCC
Q 034380 14 KWVLHDWGDDLCLKILKNCYDALPE-------PGKIIVVESIMPEFPE------------TDIISKNISRLHITVSNLFP 74 (96)
Q Consensus 14 ~~vlh~~~d~~~~~lL~~~~~al~~-------gg~l~I~e~~~~~~~~------------~~~~~~~~~~~dl~ml~~~~ 74 (96)
.+.+..++...-.++++.|.++++. .|.+.+.+.+++.++. ........+..|+.-+.=
T Consensus 119 ~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~~l~~~~~~~~Dl~~l~r-- 196 (216)
T PRK09902 119 QHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEK-- 196 (216)
T ss_pred cCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhccchhhhhhhhhHhHHHHHHH--
Confidence 3444555666667889999988874 4777777777653322 011122344567665541
Q ss_pred CCccCCHHHHHHHHH
Q 034380 75 GAKERTLEEFKSLAI 89 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~ 89 (96)
+....|.++|..++.
T Consensus 197 ~~~~~s~~~~~~~~~ 211 (216)
T PRK09902 197 YLEPIPKADWEQVKA 211 (216)
T ss_pred hccCCCHHHHHHHHH
Confidence 334678888887765
No 185
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=49.70 E-value=38 Score=20.61 Aligned_cols=28 Identities=29% Similarity=0.245 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHHhCCC----CCEEEEEee
Q 034380 20 WGDDLCLKILKNCYDALPE----PGKIIVVES 47 (96)
Q Consensus 20 ~~d~~~~~lL~~~~~al~~----gg~l~I~e~ 47 (96)
-+|+++.++++.+.++... +|+|+|.+.
T Consensus 65 v~de~ve~vv~~I~~~a~TG~~GDGkIfV~pV 96 (112)
T PRK10665 65 IADDQLDEVIDIISKAAYTGKIGDGKIFVAEL 96 (112)
T ss_pred EChHhHHHHHHHHHHHhccCCCCCcEEEEEEh
Confidence 3577777777777777754 499999874
No 186
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=49.48 E-value=19 Score=26.28 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=24.8
Q ss_pred cccCCChHHH-------HHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 16 VLHDWGDDLC-------LKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 16 vlh~~~d~~~-------~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
+...|+.++. .+||.++.+.++|||+|+-.=-.+.
T Consensus 251 ~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 251 VKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 4456666655 3678899999999998876664444
No 187
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=48.45 E-value=22 Score=19.41 Aligned_cols=15 Identities=33% Similarity=0.262 Sum_probs=11.9
Q ss_pred cCCHHHHHHHHHhhC
Q 034380 78 ERTLEEFKSLAIGLL 92 (96)
Q Consensus 78 ~Rt~~e~~~l~~~AG 92 (96)
-|+.+||.+++++.|
T Consensus 14 Gk~~~~W~~~~~~~~ 28 (61)
T PF14117_consen 14 GKTLDEWLALAREGG 28 (61)
T ss_pred CcCHHHHHHHHHHhC
Confidence 478888888888874
No 188
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=48.40 E-value=40 Score=23.18 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=29.8
Q ss_pred CCCCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 3 VEVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 3 ~~~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
+.+|. +|+.++-.=-.++++.+..+|-+ -|..||++++.=.
T Consensus 192 ~~IP~~~d~Lvi~~P~~~ls~~e~~~l~~----yl~~GG~ll~~~d 233 (271)
T PF09822_consen 192 EEIPDDADVLVIAGPKTDLSEEELYALDQ----YLMNGGKLLILLD 233 (271)
T ss_pred cccCCCCCEEEEECCCCCCCHHHHHHHHH----HHHcCCeEEEEEC
Confidence 35775 69999988888899877655544 5667888877543
No 189
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=48.15 E-value=35 Score=24.77 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 23 DLCLKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 23 ~~~~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
+.+.-+|..+.+.|+|||.|+|+-...+.
T Consensus 89 ~~~~~~l~~~~~~l~~g~~i~~~G~~~~g 117 (342)
T PRK09489 89 QEAQFQLMNLLSLLPVGTDIFVVGENRSG 117 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence 45667899999999999999999875553
No 190
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=47.83 E-value=11 Score=20.31 Aligned_cols=10 Identities=0% Similarity=-0.310 Sum_probs=7.8
Q ss_pred HHHHhhCcCC
Q 034380 86 SLAIGLLNSV 95 (96)
Q Consensus 86 ~l~~~AG~~v 95 (96)
+||++|||.+
T Consensus 31 ~WL~~aGF~~ 40 (57)
T PF08845_consen 31 KWLEEAGFTI 40 (57)
T ss_pred hhhHHhCCCC
Confidence 5888999864
No 191
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=47.05 E-value=22 Score=20.91 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=19.8
Q ss_pred CChHHHHHHHHHHHHhCCC---C-CEEEEEee
Q 034380 20 WGDDLCLKILKNCYDALPE---P-GKIIVVES 47 (96)
Q Consensus 20 ~~d~~~~~lL~~~~~al~~---g-g~l~I~e~ 47 (96)
-+|+++.++++.+.+++.. | |+++|.+.
T Consensus 62 v~d~~v~~iv~~I~~~~~tg~~GdGkIfV~~V 93 (102)
T PF00543_consen 62 VPDEDVEEIVEAISEAARTGEPGDGKIFVSPV 93 (102)
T ss_dssp EEGGGHHHHHHHHHHHH-SSSTTSEEEEEEEE
T ss_pred ECHHhHHHHHHHHHHhccCCCCCCEEEEEEEh
Confidence 4567777777777777664 3 89999874
No 192
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=46.94 E-value=30 Score=22.86 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 21 GDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 21 ~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
+.+.-..+++-+++.|+|||++.| |++-|
T Consensus 61 ~s~~E~~l~~~~~~~l~pg~~lfV-eY~~D 89 (170)
T PF06557_consen 61 GSPLEDELYKLFSRYLEPGGRLFV-EYVED 89 (170)
T ss_dssp TSHHHHHHHHHHHTT----SEEEE-E-TT-
T ss_pred CChHHHHHHHHHHHHhhhcCeEEE-EEecC
Confidence 445557889999999999999876 56554
No 193
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=46.31 E-value=37 Score=22.52 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380 26 LKILKNCYDALPEPGKIIVVESIMPEF 52 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~~~~~~ 52 (96)
.+-+.+++..|+|||++++.=++-.+.
T Consensus 91 l~~m~~i~~vLK~GG~L~l~vPvG~d~ 117 (177)
T PF03269_consen 91 LRAMAKIKCVLKPGGLLFLGVPVGTDA 117 (177)
T ss_pred HHHHHHHHHhhccCCeEEEEeecCCcc
Confidence 455677888999999999988876643
No 194
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=45.69 E-value=24 Score=21.49 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.8
Q ss_pred CCCccCCHHHHHHHHHhhCcCC
Q 034380 74 PGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 74 ~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
.+|++=|.+...++++.+|..|
T Consensus 12 ~~g~~it~e~I~~IL~AAGveV 33 (106)
T PRK06402 12 SAGKEINEDNLKKVLEAAGVEV 33 (106)
T ss_pred hcCCCCCHHHHHHHHHHcCCCc
Confidence 3788999999999999999876
No 195
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=45.62 E-value=54 Score=22.40 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=36.6
Q ss_pred ccCCChHHH---HHHHHHHHHhCCCC-CEEEEEeeecCCCCCCchh---hhhhhhhhhhhhhcCCCCccCCHHHHHHHHH
Q 034380 17 LHDWGDDLC---LKILKNCYDALPEP-GKIIVVESIMPEFPETDII---SKNISRLHITVSNLFPGAKERTLEEFKSLAI 89 (96)
Q Consensus 17 lh~~~d~~~---~~lL~~~~~al~~g-g~l~I~e~~~~~~~~~~~~---~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~ 89 (96)
.|.|..... ..+++++.+ -| +.+++-+.-.+.....+.. .+.....++ -+.. +|..||.++..++++
T Consensus 139 ~~gw~~~~~~~~~~~~~~~~~---~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~i--pvi~-~GGi~s~edi~~l~~ 212 (234)
T PRK13587 139 VNGWEEDTELNLFSFVRQLSD---IPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTI--PVIA-SGGIRHQQDIQRLAS 212 (234)
T ss_pred ecCCcccCCCCHHHHHHHHHH---cCCCEEEEecccCcCCCCccCHHHHHHHHHhCCC--CEEE-eCCCCCHHHHHHHHH
Confidence 566754333 344444332 23 6777777655443333221 111111222 2222 899999999999985
Q ss_pred hhCc
Q 034380 90 GLLN 93 (96)
Q Consensus 90 ~AG~ 93 (96)
+|.
T Consensus 213 -~G~ 215 (234)
T PRK13587 213 -LNV 215 (234)
T ss_pred -cCC
Confidence 564
No 196
>PRK06852 aldolase; Validated
Probab=45.54 E-value=22 Score=25.58 Aligned_cols=31 Identities=13% Similarity=0.287 Sum_probs=26.4
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 16 VLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 16 vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
+.-+|++++....+.|..+.++..||.+|+=
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~sGr~~ivp 37 (304)
T PRK06852 7 VPLDVPEEMREEYIENYLEITKGTGRLMLFA 37 (304)
T ss_pred ccCcCChhcChhHHHHHHHhhCCCCCEEEEe
Confidence 3447888888999999999999999998874
No 197
>PRK13699 putative methylase; Provisional
Probab=44.82 E-value=35 Score=23.20 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEE
Q 034380 23 DLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 23 ~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
+-..+.++.++++|+|||.+++.
T Consensus 49 ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 49 EWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEE
Confidence 33567889999999999888763
No 198
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=44.59 E-value=30 Score=20.81 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.4
Q ss_pred CCCCccCCHHHHHHHHHhhCcCC
Q 034380 73 FPGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 73 ~~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
.+.|..=|.+....+++.+|..|
T Consensus 12 ~d~~~~~Tae~I~~ilkAaGvev 34 (103)
T cd05831 12 HDDGIEITADNINALLKAAGVNV 34 (103)
T ss_pred ccCCCCCCHHHHHHHHHHcCCcc
Confidence 35899999999999999999876
No 199
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=44.26 E-value=27 Score=25.71 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=31.9
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEF 52 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~ 52 (96)
|.+..--+..+-++. ...++.+.++++|||..++.|.+.-..
T Consensus 180 d~v~~ld~~~~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred CcEEEEeecccCCcH--HHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 666655555566664 677999999999999999999765543
No 200
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=44.24 E-value=28 Score=22.58 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=24.5
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 16 VLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 16 vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
--.||......++.+++.+.++||+.|+..+
T Consensus 129 ~~~D~~~~~~~~i~~~~~~~~~~g~Iil~Hd 159 (191)
T TIGR02764 129 DSRDWKNPGVESIVDRVVKNTKPGDIILLHA 159 (191)
T ss_pred CCCccCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 4457776667788899999999998888776
No 201
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=43.93 E-value=79 Score=20.56 Aligned_cols=41 Identities=7% Similarity=0.015 Sum_probs=24.9
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI 48 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~ 48 (96)
++++++---.-.++.+....+++.+.+....|..++++..-
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~ 148 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 46666666666677766666666555543345566665543
No 202
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=43.85 E-value=43 Score=21.09 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=48.7
Q ss_pred eEeEeccccc--CCChHHHHHHHHHHHHhCCC-CCEEEEEee---ecCCCCCCchhhhhhhhhhhhhhh-----cCCCCc
Q 034380 9 QTIFMKWVLH--DWGDDLCLKILKNCYDALPE-PGKIIVVES---IMPEFPETDIISKNISRLHITVSN-----LFPGAK 77 (96)
Q Consensus 9 D~~ll~~vlh--~~~d~~~~~lL~~~~~al~~-gg~l~I~e~---~~~~~~~~~~~~~~~~~~dl~ml~-----~~~~g~ 77 (96)
.+||++++=+ .-++.+-..++..+.+-|+. ++.++++|. .+=..+..+...-...+-|..|+. ...+-.
T Consensus 42 ~viWlT~~~~~~~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~~~~~~lIl~~~~~ 121 (136)
T PF05763_consen 42 PVIWLTKVEGENAISPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKDYALLNNGTLILVVDPE 121 (136)
T ss_pred cEEEEeccCCCCccCchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHHHeeccCCEEEEEEChh
Confidence 5899998865 56777777888888888888 677888883 333333332211123344554432 111345
Q ss_pred cCCHHHHHHHHH
Q 034380 78 ERTLEEFKSLAI 89 (96)
Q Consensus 78 ~Rt~~e~~~l~~ 89 (96)
.-+..||.=|-+
T Consensus 122 al~ere~~lL~r 133 (136)
T PF05763_consen 122 ALDEREWALLRR 133 (136)
T ss_pred hcCHHHHHHHHH
Confidence 677777765543
No 203
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=43.84 E-value=24 Score=19.71 Aligned_cols=21 Identities=19% Similarity=-0.042 Sum_probs=14.3
Q ss_pred CCccCCHHHHHHHHHhhCcCC
Q 034380 75 GAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~~v 95 (96)
+....|.+|+.+.|++.|+.|
T Consensus 16 ~~~i~sQ~eL~~~L~~~Gi~v 36 (70)
T PF01316_consen 16 EHEISSQEELVELLEEEGIEV 36 (70)
T ss_dssp HS---SHHHHHHHHHHTT-T-
T ss_pred HCCcCCHHHHHHHHHHcCCCc
Confidence 456889999999999999886
No 204
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=43.77 E-value=68 Score=18.90 Aligned_cols=47 Identities=11% Similarity=0.196 Sum_probs=32.5
Q ss_pred cceEeEe-cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 034380 7 KAQTIFM-KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFP 53 (96)
Q Consensus 7 ~~D~~ll-~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~ 53 (96)
+||++++ .-.+-+=.+.++...++++.+.=+|+.+|++.--+....+
T Consensus 36 ~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~ 83 (98)
T PF00919_consen 36 EADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYG 83 (98)
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccCh
Confidence 4798888 3355566677777777777765458888888877665443
No 205
>PRK14702 insertion element IS2 transposase InsD; Provisional
Probab=43.42 E-value=22 Score=24.65 Aligned_cols=24 Identities=17% Similarity=-0.072 Sum_probs=21.2
Q ss_pred cCCCCccCCHHHHHHHHHhhCcCC
Q 034380 72 LFPGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 72 ~~~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
.+++|-+++..+|.+++++.|+..
T Consensus 157 hSD~Gsqy~s~~~~~~l~~~gI~~ 180 (262)
T PRK14702 157 LTDNGSCYRANETRQFARMLGLEP 180 (262)
T ss_pred EcCCCcccchHHHHHHHHHcCCee
Confidence 467999999999999999999864
No 206
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=42.21 E-value=55 Score=22.61 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=16.9
Q ss_pred CCccCCHHHHHHHHHhhCc
Q 034380 75 GAKERTLEEFKSLAIGLLN 93 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~ 93 (96)
+|..+|.+++.+++++.|.
T Consensus 202 sGGv~s~eD~~~l~~~~Gv 220 (258)
T PRK01033 202 LGGAGSLDDIVEAILNLGA 220 (258)
T ss_pred eCCCCCHHHHHHHHHHCCC
Confidence 8999999999999977664
No 207
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.82 E-value=27 Score=24.19 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCCCCEEEEE
Q 034380 25 CLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I~ 45 (96)
+.++.++.-.-|+|||+++|-
T Consensus 172 a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 172 ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccccHHHHHHhhccCCeEEEe
Confidence 466777888889999999874
No 208
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=41.75 E-value=37 Score=20.51 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.3
Q ss_pred CCccCCHHHHHHHHHhhCcCC
Q 034380 75 GAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~~v 95 (96)
+|.+-|.++..+++..+|..|
T Consensus 13 ~g~~~ta~~I~~IL~aaGveV 33 (105)
T cd04411 13 GGKELTEDKIKELLSAAGAEI 33 (105)
T ss_pred cCCCCCHHHHHHHHHHcCCCc
Confidence 788899999999999999876
No 209
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=41.43 E-value=36 Score=24.14 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=23.2
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
.|++++..-. .-+.++=.++|.++.+.|+||++|++=
T Consensus 193 ~DvV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 193 YDVVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -SEEEE-TT--S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred CCEEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 4777776544 333444578999999999999988775
No 210
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=41.30 E-value=65 Score=24.12 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=33.9
Q ss_pred Ccc-eEeEe----cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 6 PKA-QTIFM----KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 6 P~~-D~~ll----~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
|.+ |+.++ ....|.-.++.-.+++..+.+++.+||.++|--+-+.
T Consensus 178 ~~~~DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa~g 227 (427)
T COG1236 178 PPCIDVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALG 227 (427)
T ss_pred CCCCcEEEEecccCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEeccccc
Confidence 344 77776 3466777777777789999999999999998776554
No 211
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=41.24 E-value=31 Score=20.27 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=16.7
Q ss_pred hcCCCCccCCHHHHHHHHHhhCcCC
Q 034380 71 NLFPGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 71 ~~~~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
..| |.-.||.+++.+-|+..|+.+
T Consensus 35 ~lT-Nns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 35 FLT-NNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp EEE-S-SSS-HHHHHHHHHHTTTT-
T ss_pred EEe-CCCCCCHHHHHHHHHhcCcCC
Confidence 345 788888888888888888865
No 212
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=41.06 E-value=12 Score=26.36 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=18.0
Q ss_pred HHHHHHHHHhC----CCCCEEEEEee
Q 034380 26 LKILKNCYDAL----PEPGKIIVVES 47 (96)
Q Consensus 26 ~~lL~~~~~al----~~gg~l~I~e~ 47 (96)
.+||+++.+.+ +|||+++=.=-
T Consensus 195 ~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 195 REILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp HHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred HHHHHHHHHhhcccccCCCeEEEEec
Confidence 47899999999 99998876553
No 213
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.97 E-value=27 Score=19.55 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 22 DDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 22 d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
|....+++=+.-+++++|++++|-|.
T Consensus 13 Dp~~kqlilnmd~sm~~~skfii~eL 38 (71)
T KOG3451|consen 13 DPAFKQLILNMDDSMQLGSKFIIEEL 38 (71)
T ss_pred ChhHHHHhhhccccCCCCCCeeEEEe
Confidence 45567888888999999999998774
No 214
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=40.55 E-value=18 Score=21.58 Aligned_cols=15 Identities=20% Similarity=0.093 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhCcCC
Q 034380 81 LEEFKSLAIGLLNSV 95 (96)
Q Consensus 81 ~~e~~~l~~~AG~~v 95 (96)
...|+..|+++|++|
T Consensus 81 ~~SW~~~l~~~g~~v 95 (103)
T cd03413 81 PDSWKSILEAAGIKV 95 (103)
T ss_pred chhHHHHHHHCCCee
Confidence 568999999999987
No 215
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=40.50 E-value=20 Score=22.77 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=26.3
Q ss_pred CCC-cceEeEec---ccccCCChHHHHHHHHHHHHhCCCCCEE
Q 034380 4 EVP-KAQTIFMK---WVLHDWGDDLCLKILKNCYDALPEPGKI 42 (96)
Q Consensus 4 ~~P-~~D~~ll~---~vlh~~~d~~~~~lL~~~~~al~~gg~l 42 (96)
+.| .+|++++- ..+|+..-.+...+...++++...|+.|
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi 45 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPI 45 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcE
Confidence 345 57999994 3566655555667777888887776543
No 216
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=39.95 E-value=40 Score=20.37 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.4
Q ss_pred CCCccCCHHHHHHHHHhhCcCC
Q 034380 74 PGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 74 ~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
.+|..-|.+....+++.||..|
T Consensus 12 ~~g~~iT~e~I~~IL~AAGv~v 33 (105)
T TIGR03685 12 SAGKEINEENLKAVLEAAGVEV 33 (105)
T ss_pred hcCCCCCHHHHHHHHHHhCCcc
Confidence 3788999999999999999665
No 217
>PLN02823 spermine synthase
Probab=39.65 E-value=34 Score=24.88 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=16.2
Q ss_pred HHHHH-HHHHhCCCCCEEEEE
Q 034380 26 LKILK-NCYDALPEPGKIIVV 45 (96)
Q Consensus 26 ~~lL~-~~~~al~~gg~l~I~ 45 (96)
.++++ .|++.|+|||.+++.
T Consensus 199 ~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 199 KSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred HHHHHHHHHHhcCCCcEEEEe
Confidence 56787 899999999987653
No 218
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=39.63 E-value=35 Score=21.72 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=20.7
Q ss_pred hhhhhhhhhhcCCCCccCCHHHHHHHHH
Q 034380 62 ISRLHITVSNLFPGAKERTLEEFKSLAI 89 (96)
Q Consensus 62 ~~~~dl~ml~~~~~g~~Rt~~e~~~l~~ 89 (96)
+.+|-..||...+.|++-+.++|+.-+.
T Consensus 56 qlYF~aqmmlinp~gaeq~~~~F~~~l~ 83 (148)
T COG5443 56 QLYFIAQMMLINPAGAEQATEMFRKSLN 83 (148)
T ss_pred HHHHHHHHHhcCHhhHHHHHHHHHHHHH
Confidence 4566667776666899999988887654
No 219
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.55 E-value=38 Score=17.96 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=17.9
Q ss_pred cccCCChHHHHHHHHHHHHh
Q 034380 16 VLHDWGDDLCLKILKNCYDA 35 (96)
Q Consensus 16 vlh~~~d~~~~~lL~~~~~a 35 (96)
+++++++++..++|+.++++
T Consensus 5 l~~g~~~~el~~~l~~~r~~ 24 (58)
T PF12646_consen 5 LFSGFSGEELDKFLDALRKA 24 (58)
T ss_pred EECCCCHHHHHHHHHHHHHc
Confidence 67899999999999998876
No 220
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=39.50 E-value=29 Score=24.61 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 034380 26 LKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~ 45 (96)
..+.+.|+++|+++|.++..
T Consensus 170 ~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 170 EEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHHHHhcCCCcEEEEe
Confidence 68899999999999988877
No 221
>PRK00536 speE spermidine synthase; Provisional
Probab=39.15 E-value=38 Score=23.79 Aligned_cols=31 Identities=23% Similarity=0.158 Sum_probs=22.3
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
.|+++.-. ..+ ....+.|+++|+|||.++..
T Consensus 140 fDVIIvDs----~~~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 140 YDLIICLQ----EPD---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CCEEEEcC----CCC---hHHHHHHHHhcCCCcEEEEC
Confidence 47776543 222 56678899999999988774
No 222
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=38.90 E-value=69 Score=17.61 Aligned_cols=30 Identities=7% Similarity=-0.005 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHHHHHhCCCC-CEEEEEeee
Q 034380 19 DWGDDLCLKILKNCYDALPEP-GKIIVVESI 48 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~g-g~l~I~e~~ 48 (96)
+.+..+..++++++.+.+.|+ ++|.|+...
T Consensus 38 ~~~~~~~~~l~~~l~~~i~~~~d~i~i~~l~ 68 (78)
T PF09827_consen 38 NLTNAELRKLRRELEKLIDPDEDSIRIYPLC 68 (78)
T ss_dssp EE-HHHHHHHHHHHHHHSCTTTCEEEEEEEE
T ss_pred EcCHHHHHHHHHHHHhhCCCCCCEEEEEEeC
Confidence 457788889999999999998 999988753
No 223
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=38.73 E-value=32 Score=14.58 Aligned_cols=12 Identities=42% Similarity=1.013 Sum_probs=7.5
Q ss_pred HHHHHHHH-hCCC
Q 034380 27 KILKNCYD-ALPE 38 (96)
Q Consensus 27 ~lL~~~~~-al~~ 38 (96)
.||++|.. ||+.
T Consensus 4 eiL~~CI~sAmPk 16 (20)
T PF05924_consen 4 EILQECIGSAMPK 16 (20)
T ss_dssp HHHHHHHHCTS--
T ss_pred HHHHHHHHHhccc
Confidence 78888885 4443
No 224
>PRK15450 signal transduction protein PmrD; Provisional
Probab=38.65 E-value=22 Score=20.62 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=15.8
Q ss_pred CCccCCHHHHHHHHHhhC
Q 034380 75 GAKERTLEEFKSLAIGLL 92 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG 92 (96)
+.++||.+||.++.+.+|
T Consensus 68 ~As~Ys~deW~r~~~~~~ 85 (85)
T PRK15450 68 SASCYSPDEWERQCKKAG 85 (85)
T ss_pred eccccCHHHHHHHhccCC
Confidence 788999999999988765
No 225
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=38.55 E-value=43 Score=20.37 Aligned_cols=21 Identities=24% Similarity=0.105 Sum_probs=19.1
Q ss_pred CCccCCHHHHHHHHHhhCcCC
Q 034380 75 GAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~~v 95 (96)
+|++-|.+....++..||..|
T Consensus 13 ~G~eITae~I~~IL~AAGveV 33 (106)
T cd05832 13 AGKEINEENLKKVLEAAGIEV 33 (106)
T ss_pred cCCCCCHHHHHHHHHHhCCcc
Confidence 788999999999999999665
No 226
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=37.98 E-value=46 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCCCEEEEEee
Q 034380 26 LKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~ 47 (96)
..+++++.+.|+++|.|.|-=.
T Consensus 105 ~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 105 RGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred HHHHHHHHHhcCCCCEEEEEeC
Confidence 4567788888999999987543
No 227
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=37.60 E-value=52 Score=21.01 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380 22 DDLCLKILKNCYDALPEPGKIIVVESI 48 (96)
Q Consensus 22 d~~~~~lL~~~~~al~~gg~l~I~e~~ 48 (96)
-+++.+++++|.++...+-+++|--.+
T Consensus 60 G~eA~~Lv~r~~~av~~~~KVli~Frl 86 (137)
T PF12101_consen 60 GEEAKELVRRCQKAVDEDKKVLIGFRL 86 (137)
T ss_pred cHHHHHHHHHHHhhcccCCcEEEEEEe
Confidence 478999999999999988888765544
No 228
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=37.19 E-value=1.5e+02 Score=20.99 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=44.8
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHH
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLA 88 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~ 88 (96)
|+++-+..+.- -....+-++.|.+.|+|||.-|=+-+++-.-. +.. .....+-+-|.+|..++.
T Consensus 167 d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~------------~~~--~~~~~sveLs~eEi~~l~ 230 (270)
T PF07942_consen 167 DVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFE------------PMS--IPNEMSVELSLEEIKELI 230 (270)
T ss_pred cEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCC------------CCC--CCCCcccCCCHHHHHHHH
Confidence 77776644432 33467889999999999994332222222110 100 011245788999999999
Q ss_pred HhhCcCC
Q 034380 89 IGLLNSV 95 (96)
Q Consensus 89 ~~AG~~v 95 (96)
+..||++
T Consensus 231 ~~~GF~~ 237 (270)
T PF07942_consen 231 EKLGFEI 237 (270)
T ss_pred HHCCCEE
Confidence 9999875
No 229
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=37.11 E-value=32 Score=18.53 Aligned_cols=21 Identities=19% Similarity=0.050 Sum_probs=17.8
Q ss_pred CCccCCHHHHHHHHHhhCcCC
Q 034380 75 GAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~~v 95 (96)
-|..-|.++..++|+..|+.+
T Consensus 15 lG~~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 15 LGLDLSAEEIEEILKRLGFEV 35 (71)
T ss_pred HCCCCCHHHHHHHHHHCCCeE
Confidence 366788999999999999865
No 230
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=37.02 E-value=24 Score=24.59 Aligned_cols=17 Identities=12% Similarity=-0.031 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHhhCcCC
Q 034380 79 RTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 79 Rt~~e~~~l~~~AG~~v 95 (96)
-++.+|..+|+++|+.|
T Consensus 216 ddedswk~il~~~G~~v 232 (265)
T COG4822 216 DDEDSWKNILEKNGFKV 232 (265)
T ss_pred cchHHHHHHHHhCCcee
Confidence 45689999999999976
No 231
>PRK09213 pur operon repressor; Provisional
Probab=36.78 E-value=34 Score=24.20 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=17.8
Q ss_pred HhCCCCCEEEEEeeecCCCCC
Q 034380 34 DALPEPGKIIVVESIMPEFPE 54 (96)
Q Consensus 34 ~al~~gg~l~I~e~~~~~~~~ 54 (96)
+++++|.+++|+|.++...+.
T Consensus 191 ~~l~~G~rVLIVDDv~~TGgT 211 (271)
T PRK09213 191 RSLKEGSRVLIVDDFMKAGGT 211 (271)
T ss_pred hhcCCcCEEEEEeeecccCHh
Confidence 578999999999999987653
No 232
>PRK04280 arginine repressor; Provisional
Probab=36.53 E-value=32 Score=22.00 Aligned_cols=21 Identities=14% Similarity=-0.086 Sum_probs=18.6
Q ss_pred CCccCCHHHHHHHHHhhCcCC
Q 034380 75 GAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~~v 95 (96)
+-.-.|.+|+.+.|++.|+.|
T Consensus 15 ~~~I~tQeeL~~~L~~~Gi~v 35 (148)
T PRK04280 15 NNEIETQDELVDRLREEGFNV 35 (148)
T ss_pred hCCCCCHHHHHHHHHHcCCCe
Confidence 567889999999999999986
No 233
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=36.04 E-value=79 Score=23.28 Aligned_cols=38 Identities=5% Similarity=-0.063 Sum_probs=33.4
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~ 45 (96)
-|-|+|.-+=.-.+|.+.-.++.++++.+.+|.+||.-
T Consensus 328 Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifR 365 (414)
T COG5379 328 VDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFR 365 (414)
T ss_pred cceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEe
Confidence 38899988887779999999999999999999988764
No 234
>PLN02476 O-methyltransferase
Probab=36.00 E-value=83 Score=22.31 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 19 DWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
|-+..+-...+..+.+.|+|||.|++ |.++-
T Consensus 201 Da~K~~Y~~y~e~~l~lL~~GGvIV~-DNvL~ 231 (278)
T PLN02476 201 DADKRMYQDYFELLLQLVRVGGVIVM-DNVLW 231 (278)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEE-ecCcc
Confidence 44567778889999999999987655 54443
No 235
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=35.93 E-value=37 Score=21.43 Aligned_cols=28 Identities=21% Similarity=0.129 Sum_probs=20.9
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEE
Q 034380 15 WVLHDWGDDLCLKILKNCYDALPEPGKI 42 (96)
Q Consensus 15 ~vlh~~~d~~~~~lL~~~~~al~~gg~l 42 (96)
.-||+..+..+..|+..+++||..|..+
T Consensus 12 GHLHHiEPKRVKvIVeEv~qaltegklL 39 (149)
T PF03574_consen 12 GHLHHIEPKRVKVIVEEVRQALTEGKLL 39 (149)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHSSS---
T ss_pred ccccccCchhhhhHHHHHHHHHhhhhHH
Confidence 4589999999999999999999998776
No 236
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=35.93 E-value=84 Score=20.41 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=18.3
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 20 WGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 20 ~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
++|+.+..|.+.+.+...++++|+++-
T Consensus 7 Ys~~T~~~l~~~l~~~~~~~~~iacls 33 (162)
T PF10237_consen 7 YSDETAEFLARELLDGALDDTRIACLS 33 (162)
T ss_pred cCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 355666666666667666778888775
No 237
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=35.88 E-value=38 Score=23.70 Aligned_cols=32 Identities=6% Similarity=0.154 Sum_probs=24.6
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 16 VLHDWGDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 16 vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
--.||.......+.+++.+.+.||+.|+..+.
T Consensus 208 d~~Dw~~~~~~~i~~~v~~~~~~G~IILmHd~ 239 (268)
T TIGR02873 208 DTIDWKNPSPSVMVNRVLSKIHPGAMVLMHPT 239 (268)
T ss_pred CCCCCCCCCHHHHHHHHHhcCCCCcEEEEcCC
Confidence 34688666667888998888899988888764
No 238
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=35.75 E-value=36 Score=24.54 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=21.0
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
.|++++...+++.+ ..+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 48877765444433 34567899999988854
No 239
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=35.62 E-value=31 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=26.9
Q ss_pred cceEeEe--cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 7 KAQTIFM--KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 7 ~~D~~ll--~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
.+|++++ ++....++. +..+++++.+.|++++++|+...+
T Consensus 156 ~ad~il~~G~n~~~~~~~-----~~~~~~~a~~~g~kvv~idp~~s~ 197 (374)
T cd00368 156 NADLILLWGSNPAETHPV-----LAARLRRAKKRGAKLIVIDPRRTE 197 (374)
T ss_pred hCCEEEEEcCChHHhChH-----HHHHHHHHHHCCCeEEEEcCCCCc
Confidence 3576665 356666654 345555666689999999987654
No 240
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=35.35 E-value=38 Score=23.70 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=20.7
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 18 HDWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 18 h~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
|+-..-.-..+++.++..|+|||++.++=
T Consensus 142 r~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 142 RHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred hhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 33333345678899999999999987653
No 241
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=34.87 E-value=61 Score=22.20 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=23.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 19 DWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
|-...+-.+.+..+.+.|+|||.|++-..+.+
T Consensus 139 DadK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 139 DADKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred eCChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 55566667889999999999986655444444
No 242
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=34.65 E-value=45 Score=25.52 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 034380 25 CLKILKNCYDALPEPGKIIV 44 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I 44 (96)
-.+|++++.+.|+|||.+++
T Consensus 248 ~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 248 YFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred HHHHHHHHHHhccCCCEEEE
Confidence 35678888999999998865
No 243
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=34.49 E-value=39 Score=22.17 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=19.6
Q ss_pred HHHHHHhCCCCCEEEEEeeecCCCC
Q 034380 29 LKNCYDALPEPGKIIVVESIMPEFP 53 (96)
Q Consensus 29 L~~~~~al~~gg~l~I~e~~~~~~~ 53 (96)
+.-...++++|-+++|+|.++...+
T Consensus 106 l~~~~~~l~~G~rVlIVDDllaTGg 130 (179)
T COG0503 106 LELHKDALKPGDRVLIVDDLLATGG 130 (179)
T ss_pred EEEEhhhCCCCCEEEEEecchhcCh
Confidence 3334568889999999999988764
No 244
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=33.96 E-value=61 Score=24.26 Aligned_cols=43 Identities=21% Similarity=0.131 Sum_probs=26.9
Q ss_pred CcceEeEe--cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380 6 PKAQTIFM--KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEF 52 (96)
Q Consensus 6 P~~D~~ll--~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~ 52 (96)
..+|++++ ++....++. .+.+.++++-+.|++|+++|+...+.
T Consensus 159 ~~ad~Il~~G~n~~~~~~~----~~~~~~~~ar~~g~klividpr~s~t 203 (477)
T cd02759 159 ENPECIVLWGKNPLNSNLD----LQGHWLVAAMKRGAKLIVVDPRLTWL 203 (477)
T ss_pred hcCCEEEEEccChhhhCcH----HHHHHHHHHHHCCCEEEEECCCCChh
Confidence 34677766 667777663 12233333435789999999876644
No 245
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=33.74 E-value=23 Score=22.82 Aligned_cols=15 Identities=20% Similarity=0.042 Sum_probs=13.4
Q ss_pred HHHHHHHHhhCcCCC
Q 034380 82 EEFKSLAIGLLNSVK 96 (96)
Q Consensus 82 ~e~~~l~~~AG~~v~ 96 (96)
.+|.+-++..||.||
T Consensus 40 ~~w~~~mk~~Gf~Vk 54 (149)
T COG3019 40 DEWAQHMKANGFEVK 54 (149)
T ss_pred HHHHHHHHhCCcEEE
Confidence 489999999999986
No 246
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=33.73 E-value=28 Score=23.15 Aligned_cols=20 Identities=10% Similarity=0.373 Sum_probs=16.8
Q ss_pred HhCCCCCEEEEEeeecCCCC
Q 034380 34 DALPEPGKIIVVESIMPEFP 53 (96)
Q Consensus 34 ~al~~gg~l~I~e~~~~~~~ 53 (96)
.++++|-+++|+|.++...+
T Consensus 112 ~~i~~G~rVlIVDDviaTGg 131 (189)
T PRK09219 112 KFLSEGDRVLIIDDFLANGQ 131 (189)
T ss_pred hhCCCCCEEEEEeehhhcCh
Confidence 46789999999999988764
No 247
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=33.72 E-value=1.1e+02 Score=24.25 Aligned_cols=42 Identities=14% Similarity=0.319 Sum_probs=28.1
Q ss_pred CCcceEeEecccccC----CC--hHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 5 VPKAQTIFMKWVLHD----WG--DDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 5 ~P~~D~~ll~~vlh~----~~--d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
+|..|+.++-..-.+ .+ .+...++++.+.+++..||+++|-=
T Consensus 362 ~~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP~ 409 (630)
T TIGR03675 362 FPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIPV 409 (630)
T ss_pred CCCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 455688888554332 12 2333567888889999999999864
No 248
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=33.54 E-value=26 Score=15.53 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=8.6
Q ss_pred CCCCEEEEEee
Q 034380 37 PEPGKIIVVES 47 (96)
Q Consensus 37 ~~gg~l~I~e~ 47 (96)
.++|.|+|.|.
T Consensus 10 ~~~g~i~VaD~ 20 (28)
T PF01436_consen 10 DSDGNIYVADS 20 (28)
T ss_dssp ETTSEEEEEEC
T ss_pred eCCCCEEEEEC
Confidence 37889999884
No 249
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=33.36 E-value=1.1e+02 Score=21.49 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCC-CCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHH----HHHHhhCcC
Q 034380 24 LCLKILKNCYDALP-EPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFK----SLAIGLLNS 94 (96)
Q Consensus 24 ~~~~lL~~~~~al~-~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~----~l~~~AG~~ 94 (96)
++++-+.++.++|. |+|-.+++-. +..+..+...-.+.+.+...+... -.+.++.++|+ .++.+||..
T Consensus 15 ~ai~hi~ri~RvL~~~~Gh~LLvG~--~GsGr~sl~rLaa~i~~~~~~~i~-~~~~y~~~~f~~dLk~~~~~ag~~ 87 (268)
T PF12780_consen 15 EAIEHIARISRVLSQPRGHALLVGV--GGSGRQSLARLAAFICGYEVFQIE-ITKGYSIKDFKEDLKKALQKAGIK 87 (268)
T ss_dssp HHHHHHHHHHHHHCSTTEEEEEECT--TTSCHHHHHHHHHHHTTEEEE-TT-TSTTTHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCCCCCeEEecC--CCccHHHHHHHHHHHhccceEEEE-eeCCcCHHHHHHHHHHHHHHHhcc
Confidence 35666777777776 6788876654 212211211111223344444433 46778888775 455667753
No 250
>PF02479 Herpes_IE68: Herpesvirus immediate early protein; InterPro: IPR003403 This regulatory protein is expressed from an immediate early gene in the cell cycle of Herpesviridae. The protein is known by various names including IE-68, US1, ICP22 and IR4.
Probab=33.35 E-value=54 Score=20.79 Aligned_cols=29 Identities=10% Similarity=-0.118 Sum_probs=23.4
Q ss_pred hhhhhhhhhhcCCCCccCCHHHHHHHHHhhC
Q 034380 62 ISRLHITVSNLFPGAKERTLEEFKSLAIGLL 92 (96)
Q Consensus 62 ~~~~dl~ml~~~~~g~~Rt~~e~~~l~~~AG 92 (96)
..++|+.||.- -|.--+.+.|+.||.-.|
T Consensus 62 R~l~D~YlmGy--~~~Rl~~~~We~lLQlsp 90 (132)
T PF02479_consen 62 RLLLDFYLMGY--TRQRLTPACWERLLQLSP 90 (132)
T ss_pred HHHHHHHHHhh--ccCCCCHHHHHHHHhhCc
Confidence 45789999974 478889999999997655
No 251
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=33.23 E-value=1.2e+02 Score=23.84 Aligned_cols=41 Identities=17% Similarity=0.067 Sum_probs=34.1
Q ss_pred cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
.||+|++--.-..++=.+-...-+-+++..+++-.++|+|.
T Consensus 231 dADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEH 271 (591)
T COG1245 231 DADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271 (591)
T ss_pred cCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEec
Confidence 47999998888888888888888888888788888999984
No 252
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=32.73 E-value=59 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=20.9
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 17 LHDWGDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 17 lh~~~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
+|.-+|. ...++.+.+.++++|+++++..
T Consensus 279 ~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 279 LKLETDR--PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred cccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence 3334443 4467888889999999999864
No 253
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=32.56 E-value=88 Score=18.37 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=24.5
Q ss_pred CCChHHHHHHHHHHHHhCCC-CCEEEEEeee
Q 034380 19 DWGDDLCLKILKNCYDALPE-PGKIIVVESI 48 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~-gg~l~I~e~~ 48 (96)
+.++++...++.++.+.+.. ||.++-+|..
T Consensus 17 ~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~w 47 (97)
T CHL00123 17 DLNEEELLKWIENYKKLLRKRGAKNISVQNR 47 (97)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 55889999999999999987 6788777754
No 254
>PRK05066 arginine repressor; Provisional
Probab=32.29 E-value=43 Score=21.67 Aligned_cols=21 Identities=10% Similarity=-0.149 Sum_probs=19.0
Q ss_pred CCccCCHHHHHHHHHhhCcC-C
Q 034380 75 GAKERTLEEFKSLAIGLLNS-V 95 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~~-v 95 (96)
+-.-+|.+|+.+.|++.|+. |
T Consensus 20 ~~~I~tQeeL~~~L~~~Gi~~v 41 (156)
T PRK05066 20 EEKFGSQGEIVTALQEQGFDNI 41 (156)
T ss_pred hCCCCCHHHHHHHHHHCCCCee
Confidence 67889999999999999998 6
No 255
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=32.23 E-value=42 Score=15.64 Aligned_cols=10 Identities=30% Similarity=0.282 Sum_probs=7.6
Q ss_pred HHHHHHHHhh
Q 034380 82 EEFKSLAIGL 91 (96)
Q Consensus 82 ~e~~~l~~~A 91 (96)
+||.+|+.+|
T Consensus 3 ~EW~~Li~eA 12 (30)
T PF08671_consen 3 EEWVELIKEA 12 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6898887754
No 256
>PHA02517 putative transposase OrfB; Reviewed
Probab=32.19 E-value=42 Score=23.01 Aligned_cols=23 Identities=0% Similarity=-0.263 Sum_probs=20.2
Q ss_pred CCCCccCCHHHHHHHHHhhCcCC
Q 034380 73 FPGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 73 ~~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
+++|.+++..+|+.++++.|...
T Consensus 175 sD~G~~y~s~~~~~~~~~~gi~~ 197 (277)
T PHA02517 175 SDKGSQYVSLAYTQRLKEAGIRA 197 (277)
T ss_pred cccccccchHHHHHHHHHcCccc
Confidence 57999999999999999999764
No 257
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=32.17 E-value=2.1e+02 Score=22.39 Aligned_cols=62 Identities=15% Similarity=0.069 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHHHh
Q 034380 23 DLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIG 90 (96)
Q Consensus 23 ~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~~ 90 (96)
+++.++|+.+.+.=..-|.-.++|.+........ ..++..-+....-|+.++..+|+.++..
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 475 (607)
T PRK11057 414 EDAQKALSCIYRVNQRFGMGYVVEVLRGANNQRI------RDYGHDKLKVYGIGRDKSHEHWVSVIRQ 475 (607)
T ss_pred HHHHHHHHHHHHhcCCCCcceeeeeeeccCcchh------hhcccccCCccCcCCcCCHHHHHHHHHH
Confidence 3467788777764333477788888777543221 1222222333446999999999998764
No 258
>smart00463 SMR Small MutS-related domain.
Probab=32.02 E-value=60 Score=17.89 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=19.1
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCC
Q 034380 17 LHDWGDDLCLKILKNCYDALPEPG 40 (96)
Q Consensus 17 lh~~~d~~~~~lL~~~~~al~~gg 40 (96)
||.++-++|...|....+.+...+
T Consensus 6 LHG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 6 LHGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcC
Confidence 799999999999888777665543
No 259
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=31.82 E-value=34 Score=22.69 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=30.4
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPE 54 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~ 54 (96)
|+++..+..+-.=.|. +.-...|++||.+++|+|.++-..+.
T Consensus 96 G~~i~~~Y~lEYg~d~-----~Emq~~Ai~~g~rvvvVDDllATGGT 137 (183)
T KOG1712|consen 96 GEVISESYELEYGEDR-----FEMQKGAIKPGQRVVVVDDLLATGGT 137 (183)
T ss_pred CceeEEEEeeecCccc-----eeeeccccCCCCeEEEEechhhcCcc
Confidence 4677766666554442 44456799999999999999887654
No 260
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=31.76 E-value=63 Score=16.22 Aligned_cols=18 Identities=22% Similarity=0.006 Sum_probs=14.2
Q ss_pred cCCHHHHHHHHHhhCcCC
Q 034380 78 ERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 78 ~Rt~~e~~~l~~~AG~~v 95 (96)
.++.++..++.++.|+.+
T Consensus 26 ~~~~~e~~~lA~~~Gy~f 43 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDF 43 (49)
T ss_pred cCCHHHHHHHHHHcCCCC
Confidence 348888888888888764
No 261
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=31.54 E-value=28 Score=23.10 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 034380 26 LKILKNCYDALPEPGKIIVV 45 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~ 45 (96)
..+|..+++.|+|||.|.+.
T Consensus 113 ~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 113 PEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred chHHHHHHHHcCCCCEEEEE
Confidence 57889999999999988554
No 262
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=31.24 E-value=29 Score=20.53 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeec
Q 034380 26 LKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
...++.+.+.++++|+++++-...
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHHhccCCEEEEEEccC
Confidence 356788888999999999998866
No 263
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=31.16 E-value=16 Score=25.47 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=25.0
Q ss_pred ccCCChHHHHHHHHHHHHhC-CCCCEEEEEeeecC
Q 034380 17 LHDWGDDLCLKILKNCYDAL-PEPGKIIVVESIMP 50 (96)
Q Consensus 17 lh~~~d~~~~~lL~~~~~al-~~gg~l~I~e~~~~ 50 (96)
+=|.++. -..+.++.++| ++||++.++-++++
T Consensus 118 fLDlp~P--w~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 118 FLDLPDP--WEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp EEESSSG--GGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred EEeCCCH--HHHHHHHHHHHhcCCceEEEECCCHH
Confidence 3377775 56789999999 89999998876655
No 264
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=30.89 E-value=78 Score=19.40 Aligned_cols=21 Identities=29% Similarity=0.166 Sum_probs=19.6
Q ss_pred CCccCCHHHHHHHHHhhCcCC
Q 034380 75 GAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~~v 95 (96)
.|++-|.+.+..+++.+|..|
T Consensus 13 agkei~e~~l~~vl~aaGvev 33 (109)
T COG2058 13 AGKEITEDNLKSVLEAAGVEV 33 (109)
T ss_pred ccCcCCHHHHHHHHHHcCCCc
Confidence 788999999999999999877
No 265
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=30.82 E-value=1e+02 Score=18.96 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHhCCC----CCEEEEEee
Q 034380 20 WGDDLCLKILKNCYDALPE----PGKIIVVES 47 (96)
Q Consensus 20 ~~d~~~~~lL~~~~~al~~----gg~l~I~e~ 47 (96)
.+|+++-+++..+.++++. +|+++|.+.
T Consensus 65 V~de~ve~vie~I~~~a~tG~~GDGkIFV~~V 96 (112)
T COG0347 65 VSDEDVDEVIEAIKKAARTGKIGDGKIFVSPV 96 (112)
T ss_pred EChHHHHHHHHHHHHHHhcCCCCCeEEEEEEh
Confidence 3577788888888887773 499999873
No 266
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=30.49 E-value=1.4e+02 Score=21.65 Aligned_cols=67 Identities=12% Similarity=-0.001 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCCCCCC-----chhhh-hhhhhhhhhhhcCCC---------CccCCHHHHHHHHHh
Q 034380 26 LKILKNCYDALPEPGKIIVVESIMPEFPET-----DIISK-NISRLHITVSNLFPG---------AKERTLEEFKSLAIG 90 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~~~~~~~~~-----~~~~~-~~~~~dl~ml~~~~~---------g~~Rt~~e~~~l~~~ 90 (96)
..+|+.=++-|.|||++++.=...++.... ..... ...+.||.--...+. -=.||.+|+++.+++
T Consensus 163 ~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~ 242 (334)
T PF03492_consen 163 SSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEE 242 (334)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHH
T ss_pred HHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhc
Confidence 345555556788999999988777662211 00000 112223221111101 126899999999998
Q ss_pred hC
Q 034380 91 LL 92 (96)
Q Consensus 91 AG 92 (96)
.|
T Consensus 243 ~g 244 (334)
T PF03492_consen 243 EG 244 (334)
T ss_dssp HT
T ss_pred CC
Confidence 77
No 267
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=30.19 E-value=81 Score=24.33 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=33.3
Q ss_pred eEeEecccccCCChHHHH--------HHHHHHHHhCCCCCEEEEEeee--cCCC
Q 034380 9 QTIFMKWVLHDWGDDLCL--------KILKNCYDALPEPGKIIVVESI--MPEF 52 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~--------~lL~~~~~al~~gg~l~I~e~~--~~~~ 52 (96)
|+++.+..+|.+-.++.. ..+..+.+.+++||+.+.+-.. .+..
T Consensus 116 diVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~ 169 (482)
T KOG2352|consen 116 DIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQG 169 (482)
T ss_pred eEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCC
Confidence 899999988876544333 3488899999999999888874 4544
No 268
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=30.18 E-value=1.2e+02 Score=21.48 Aligned_cols=77 Identities=9% Similarity=-0.041 Sum_probs=41.0
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCC-CEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHHHh
Q 034380 14 KWVLHDWGDDLCLKILKNCYDALPEP-GKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIG 90 (96)
Q Consensus 14 ~~vlh~~~d~~~~~lL~~~~~al~~g-g~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~~ 90 (96)
+-..|.|....-..+..-+.+....| +.+++-+.-.+.....+..+....+....-+-....|..+|.++..+|.+.
T Consensus 151 ~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~~ipVIASGGv~sleDi~~L~~~ 228 (262)
T PLN02446 151 YVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKVA 228 (262)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHc
Confidence 34778886643333333323333334 677777776665544442221122222111111237999999999999874
No 269
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=30.15 E-value=54 Score=23.48 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=19.3
Q ss_pred eEeEe-cccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 9 QTIFM-KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 9 D~~ll-~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
|++++ .+..|..+++ ..++++|+| ++|+|.
T Consensus 224 d~ifvs~s~vh~L~p~--------l~~~~a~~A-~LvvEt 254 (289)
T PF14740_consen 224 DLIFVSCSMVHFLKPE--------LFQALAPDA-VLVVET 254 (289)
T ss_pred CEEEEhhhhHhhcchH--------HHHHhCCCC-EEEEEc
Confidence 66666 4577887776 445677885 455564
No 270
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=30.05 E-value=1.2e+02 Score=20.11 Aligned_cols=37 Identities=5% Similarity=0.001 Sum_probs=22.1
Q ss_pred CcceEeEeccccc-CCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 6 PKAQTIFMKWVLH-DWGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 6 P~~D~~ll~~vlh-~~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
.++|++++-..-. .+++++...|.+-+. .||.++.+=
T Consensus 51 ~~~Dvvv~~~~~~~~l~~~~~~al~~~v~----~Ggglv~lH 88 (217)
T PF06283_consen 51 KGYDVVVFYNTGGDELTDEQRAALRDYVE----NGGGLVGLH 88 (217)
T ss_dssp CT-SEEEEE-SSCCGS-HHHHHHHHHHHH----TT-EEEEEG
T ss_pred cCCCEEEEECCCCCcCCHHHHHHHHHHHH----cCCCEEEEc
Confidence 3469998877765 488877666666444 566666665
No 271
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=29.95 E-value=1.3e+02 Score=21.22 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=28.8
Q ss_pred EEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHHHh
Q 034380 41 KIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIG 90 (96)
Q Consensus 41 ~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~~ 90 (96)
-|+.+|.....+.+.+...-....-.-..+-.|-+|.-||.++.+++|+.
T Consensus 46 ElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~a 95 (256)
T COG0107 46 ELVFLDITASSEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRA 95 (256)
T ss_pred eEEEEecccccccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHc
Confidence 47777776666554432111111112222223449999999999999874
No 272
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=29.86 E-value=88 Score=22.57 Aligned_cols=29 Identities=10% Similarity=0.231 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 22 DDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 22 d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
-+-.+++...+.+.++|||+++..-.+.+
T Consensus 239 A~vl~~La~~~~~~lkpgg~lIlSGIl~~ 267 (300)
T COG2264 239 AEVLVELAPDIKRLLKPGGRLILSGILED 267 (300)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeehHh
Confidence 44567889999999999999988774433
No 273
>PF01887 SAM_adeno_trans: S-adenosyl-l-methionine hydroxide adenosyltransferase; InterPro: IPR002747 The S-adenosyl-L-methionine (SAM) hydroxide adenosyltransferase family groups several fluorinase and chlorinase enzymes whose common feature is that they mediate nucleophilic reactions of their respective halide ions to the C-5' carbon of SAM []. These enzymes utilise a rigorously conserved amino acid side chain triad (Asp-Arg-His) which may have a role in activating water to hydroxide ion. Structural studies indicate that the protein is a homotrimer, with each monomer being composed of N- and C-terminal domains [, ]. The N-terminal domain has a central seven-stranded beta-sheet, which combines parallel and antiparallel strands sandwiched between alpha helices. The C-terminal domain forms a beta-barrel with a greek-key topology. SAM is bound at the interface between the C-terminal domain of one monomer and the N-terminal domain of the neighbouring monomer, with a total of three molecules bound by the trimer.; PDB: 2CW5_C 1WU8_C 2WR8_A 2Q6O_B 2Q6L_A 2Q6K_A 2Q6I_A 2V7T_B 2C4U_F 1RQP_C ....
Probab=29.77 E-value=1.8e+02 Score=20.32 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=33.1
Q ss_pred CCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCE-EEEEeeecCCC
Q 034380 5 VPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGK-IIVVESIMPEF 52 (96)
Q Consensus 5 ~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~-l~I~e~~~~~~ 52 (96)
.|++.++=++|-+--++-.++.-+|+.+.+..++|.. |+++|+-...+
T Consensus 26 ~P~~~IvDitH~i~pf~i~~aA~~L~~a~~~fP~gtvhl~vVDPgVGt~ 74 (258)
T PF01887_consen 26 NPDARIVDITHEIPPFDIRQAAFILAQAYPYFPKGTVHLAVVDPGVGTE 74 (258)
T ss_dssp STTSEEEEEES-S-TT-HHHHHHHHHHHHGGS-TTEEEEEE--TTTTSS
T ss_pred CcCCeEEEeeCCCCCCCHHHHHHHHHHHHhhCCCCCEEEEEECCCCCCC
Confidence 3777888889999999999999999999999999864 44555544443
No 274
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=29.71 E-value=42 Score=17.86 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=12.3
Q ss_pred cCCHHHHHHHHHhhCcC
Q 034380 78 ERTLEEFKSLAIGLLNS 94 (96)
Q Consensus 78 ~Rt~~e~~~l~~~AG~~ 94 (96)
.--.+||+.++..+|+.
T Consensus 24 ~glp~ew~~~l~~~~it 40 (59)
T PF00786_consen 24 TGLPPEWEKLLKSSGIT 40 (59)
T ss_dssp ES--HHHHHHHHSCTTS
T ss_pred ccCCHHHHhhccccCCC
Confidence 36678999999998864
No 275
>PF11830 DUF3350: Domain of unknown function (DUF3350); InterPro: IPR021785 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 50 to 64 amino acids in length.
Probab=29.70 E-value=59 Score=17.50 Aligned_cols=17 Identities=35% Similarity=0.315 Sum_probs=14.6
Q ss_pred CCccCCHHHHHHHHHhh
Q 034380 75 GAKERTLEEFKSLAIGL 91 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~A 91 (96)
..+.||.+|+++|-+.|
T Consensus 22 ~~~krt~eelR~LWrkA 38 (56)
T PF11830_consen 22 EKKKRTREELRELWRKA 38 (56)
T ss_pred cccccCHHHHHHHHHHH
Confidence 67899999999987765
No 276
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=29.67 E-value=40 Score=25.46 Aligned_cols=24 Identities=17% Similarity=-0.086 Sum_probs=21.7
Q ss_pred hcCCCCccCCHHHHHHHHHhhCcCC
Q 034380 71 NLFPGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 71 ~~~~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
+.| |||.=|-+-.+++|.+||++|
T Consensus 50 aGT-NGKGSt~afl~siL~~aG~~V 73 (427)
T COG0285 50 AGT-NGKGSTCAFLESILREAGYKV 73 (427)
T ss_pred eCC-CCchhHHHHHHHHHHHcCCCc
Confidence 356 999999999999999999987
No 277
>PRK06132 hypothetical protein; Provisional
Probab=29.65 E-value=58 Score=24.05 Aligned_cols=24 Identities=4% Similarity=0.108 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeec
Q 034380 26 LKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
.++.+++...|.||+.|+|-|.-+
T Consensus 321 ~~~~~~i~~~l~~gssl~vsD~~~ 344 (359)
T PRK06132 321 PDFRRRIAALLTPGSTLVITDQGI 344 (359)
T ss_pred HHHHHHHHHhcCCCceEEEcCCCC
Confidence 367899999999999999999765
No 278
>PRK09409 IS2 transposase TnpB; Reviewed
Probab=29.60 E-value=43 Score=23.76 Aligned_cols=24 Identities=17% Similarity=-0.072 Sum_probs=20.8
Q ss_pred cCCCCccCCHHHHHHHHHhhCcCC
Q 034380 72 LFPGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 72 ~~~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
.+++|-+++..+|.+++++.|...
T Consensus 196 hSDrGsqy~s~~~~~~l~~~gI~~ 219 (301)
T PRK09409 196 LTDNGSCYRANETRQFARMLGLEP 219 (301)
T ss_pred ecCCCcccccHHHHHHHHHcCCeE
Confidence 467999999999999999999753
No 279
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=29.49 E-value=1.5e+02 Score=19.72 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=15.1
Q ss_pred CCccCCHHHHHHHHHhhCc
Q 034380 75 GAKERTLEEFKSLAIGLLN 93 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~ 93 (96)
+|..||.++.+++++ +|.
T Consensus 195 ~GGi~~~~di~~~~~-~Ga 212 (230)
T TIGR00007 195 SGGVSSIDDLIALKK-LGV 212 (230)
T ss_pred eCCCCCHHHHHHHHH-CCC
Confidence 899999999999875 663
No 280
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=29.41 E-value=68 Score=19.53 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=18.4
Q ss_pred CCc-cCCHHHHHHHHHhhCcCC
Q 034380 75 GAK-ERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 ~g~-~Rt~~e~~~l~~~AG~~v 95 (96)
+|. .-|.++..++++.+|..|
T Consensus 13 ~g~~~pTa~dI~~IL~AaGveV 34 (109)
T cd05833 13 GGNASPSAADVKKILGSVGVEV 34 (109)
T ss_pred cCCCCCCHHHHHHHHHHcCCCc
Confidence 555 899999999999999876
No 281
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=29.40 E-value=1e+02 Score=22.27 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=27.9
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
+|++++.+= =+..++.-.|.++.+.++|||.|++.-..-
T Consensus 38 ~d~~l~~~p---K~~~e~e~qLa~ll~~~~~g~~i~v~g~~~ 76 (300)
T COG2813 38 FDAVLLYWP---KHKAEAEFQLAQLLARLPPGGEIVVVGEKR 76 (300)
T ss_pred CCEEEEEcc---CchHHHHHHHHHHHhhCCCCCeEEEEeccc
Confidence 376666542 234556778999999999999999986543
No 282
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=29.33 E-value=36 Score=23.06 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=37.9
Q ss_pred cccCCChH---HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhh---hhhhhhhhhhhcCCCCccCCHHHHHHHHH
Q 034380 16 VLHDWGDD---LCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK---NISRLHITVSNLFPGAKERTLEEFKSLAI 89 (96)
Q Consensus 16 vlh~~~d~---~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~---~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~ 89 (96)
..+.|.+. +..++++++.+. .=+.+++.+.-.+.....+..+. .....++... . +|..++.++++++.
T Consensus 137 ~~~gw~~~~~~~~~~~~~~~~~~--g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~vi--a-sGGv~~~~Dl~~l~- 210 (229)
T PF00977_consen 137 ATNGWQESSGIDLEEFAKRLEEL--GAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVI--A-SGGVRSLEDLRELK- 210 (229)
T ss_dssp EETTTTEEEEEEHHHHHHHHHHT--T-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEE--E-ESS--SHHHHHHHH-
T ss_pred EecCccccCCcCHHHHHHHHHhc--CCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEE--E-ecCCCCHHHHHHHH-
Confidence 55677653 455666655542 23677777765554444432221 2222222222 2 89999999999998
Q ss_pred hhCc
Q 034380 90 GLLN 93 (96)
Q Consensus 90 ~AG~ 93 (96)
+.|.
T Consensus 211 ~~G~ 214 (229)
T PF00977_consen 211 KAGI 214 (229)
T ss_dssp HTTE
T ss_pred HCCC
Confidence 5553
No 283
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=29.29 E-value=50 Score=23.33 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=17.4
Q ss_pred HhCCCCCEEEEEeeecCCCC
Q 034380 34 DALPEPGKIIVVESIMPEFP 53 (96)
Q Consensus 34 ~al~~gg~l~I~e~~~~~~~ 53 (96)
+++++|.+|+|+|.++...+
T Consensus 189 ~~l~~G~rVLIVDDv~~TGg 208 (268)
T TIGR01743 189 RSLKTGSKVLIIDDFMKAGG 208 (268)
T ss_pred hhCCCcCEEEEEeeecccCH
Confidence 57889999999999988764
No 284
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=29.23 E-value=54 Score=24.51 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=25.7
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 17 LHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 17 lh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
+.|=-...-+.+|+++.+....||+++|--+-+.
T Consensus 210 iRdskr~rERdFLk~VhecVa~GGkvlIPvFALG 243 (501)
T KOG1136|consen 210 IRDSKRCRERDFLKKVHECVARGGKVLIPVFALG 243 (501)
T ss_pred eccccchhHHHHHHHHHHHHhcCCeEEEEeeecc
Confidence 3344444457899999999999999999776554
No 285
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=29.12 E-value=55 Score=15.91 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=13.8
Q ss_pred ccccCCChHHHHHHHHH
Q 034380 15 WVLHDWGDDLCLKILKN 31 (96)
Q Consensus 15 ~vlh~~~d~~~~~lL~~ 31 (96)
.|+++.+.+++..|+.-
T Consensus 17 ~Vfd~v~~~Ka~~im~l 33 (36)
T PF06200_consen 17 CVFDDVPPDKAQEIMLL 33 (36)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 46788999999998864
No 286
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=28.98 E-value=1.4e+02 Score=22.24 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=38.0
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhh-hhhhh-------hhhhhcCCCCccCCHHHHHHH
Q 034380 16 VLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKN-ISRLH-------ITVSNLFPGAKERTLEEFKSL 87 (96)
Q Consensus 16 vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~-~~~~d-------l~ml~~~~~g~~Rt~~e~~~l 87 (96)
.+.=||.++..++|++ --+|+|+|...+-....+..... ..+++ ..-.... +|+.-|.++..++
T Consensus 295 ~~~PfP~~~i~~~l~~-------~k~ViVvE~n~~~Gq~g~l~~ev~~~l~~~~~~~~~~~~i~g~-gGr~~t~~~i~~~ 366 (390)
T PRK08366 295 WFRPFPKEELYEIAES-------VKGIAVLDRNFSFGQEGILFTEAKGALYNTDARPIMKNYIVGL-GGRDFTVNDVKAI 366 (390)
T ss_pred eecCCCHHHHHHHHhc-------CCEEEEEeCCCCCCcccHHHHHHHHHHhccCCCCceeceEeCc-CCccCCHHHHHHH
Confidence 3455665555554444 34689999876622222222111 22212 1112223 8999999999999
Q ss_pred HHhhC
Q 034380 88 AIGLL 92 (96)
Q Consensus 88 ~~~AG 92 (96)
+++..
T Consensus 367 ~~~~~ 371 (390)
T PRK08366 367 AEDMK 371 (390)
T ss_pred HHHHH
Confidence 88643
No 287
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=28.95 E-value=31 Score=23.72 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCCCEEEEEe
Q 034380 26 LKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e 46 (96)
.++++.|++.|+|||.+++.-
T Consensus 171 ~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 171 REFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhhcCCCcEEEEEc
Confidence 689999999999999988876
No 288
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=28.82 E-value=91 Score=18.65 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCCCEEEEEee
Q 034380 27 KILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 27 ~lL~~~~~al~~gg~l~I~e~ 47 (96)
.+++++.++|+||...++...
T Consensus 43 ~~~~ev~~~L~~GssAl~~lv 63 (102)
T PF06897_consen 43 EFIKEVGEALKPGSSALFLLV 63 (102)
T ss_pred HHHHHHHhhcCCCceEEEEEe
Confidence 479999999999977666654
No 289
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.78 E-value=54 Score=22.39 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=24.1
Q ss_pred ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
.|.++.....-..|+ . ..+.|++||+++|..-
T Consensus 139 yD~I~Vtaaa~~vP~----~----Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPE----A----LLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCH----H----HHHhcccCCEEEEEEc
Confidence 388888877777764 2 3447899999999876
No 290
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=28.16 E-value=1.9e+02 Score=19.85 Aligned_cols=54 Identities=7% Similarity=-0.077 Sum_probs=28.7
Q ss_pred CEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH--HHhhCc
Q 034380 40 GKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL--AIGLLN 93 (96)
Q Consensus 40 g~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l--~~~AG~ 93 (96)
+.+++-+.-.+.....+..+.........-.-...+|..||.+++.++ +.++|.
T Consensus 164 ~~ii~tdI~~dGt~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv 219 (243)
T TIGR01919 164 SRVVVTDSKKDGLSGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGV 219 (243)
T ss_pred CEEEEEecCCcccCCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCe
Confidence 678887765555444432111112222111111227999999999988 334453
No 291
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=28.11 E-value=78 Score=18.18 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=14.5
Q ss_pred hhhhhcCCCCccCCHHHHHHHHH
Q 034380 67 ITVSNLFPGAKERTLEEFKSLAI 89 (96)
Q Consensus 67 l~ml~~~~~g~~Rt~~e~~~l~~ 89 (96)
|+||. . .|+.+|.+++++...
T Consensus 8 L~mml-~-~~~~~t~~~L~~~i~ 28 (77)
T TIGR03853 8 LNLML-A-SGEPYTRESLKAAIE 28 (77)
T ss_pred HHHHH-H-cCCCcCHHHHHHHHH
Confidence 45555 2 688888888877654
No 292
>PF15603 Imm45: Immunity protein 45
Probab=28.04 E-value=1.3e+02 Score=17.41 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=30.9
Q ss_pred ceEeEecccccCC---------ChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 8 AQTIFMKWVLHDW---------GDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 8 ~D~~ll~~vlh~~---------~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
+|.++.++-+-+| ++.+..+|++.+.+.+...|..+.+|
T Consensus 35 ~~Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~~~~v~fE 82 (82)
T PF15603_consen 35 GDFVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSERGMTVDFE 82 (82)
T ss_pred cCEEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhcCceEEEeC
Confidence 5778888888755 56778899999999998888777664
No 293
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=27.87 E-value=36 Score=22.47 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=18.8
Q ss_pred CCcceEeEecccccCCC-----hHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 5 VPKAQTIFMKWVLHDWG-----DDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 5 ~P~~D~~ll~~vlh~~~-----d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
+-+.|++++.++=.+-- ...-.+.|++- .+.||.++++-
T Consensus 65 L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~y---V~~GGgLlmig 108 (177)
T PF07090_consen 65 LNRYDVVILSDVPANSLLKSRRSPNQLELLADY---VRDGGGLLMIG 108 (177)
T ss_dssp HCT-SEEEEES--HHHHHT----HHHHHHHHHH---HHTT-EEEEE-
T ss_pred HhcCCEEEEeCCCchhcccccCCHHHHHHHHHH---HHhCCEEEEEe
Confidence 44569998887644332 33333444443 34588887765
No 294
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=27.69 E-value=65 Score=21.25 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 23 DLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 23 ~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
+.+.+++..+...|..|.+++|.=
T Consensus 117 ~~~~~i~~eL~~~L~~g~~V~vHC 140 (168)
T PF05706_consen 117 AAAWQILEELAARLENGRKVLVHC 140 (168)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEC
Confidence 356788999999999999988764
No 295
>PRK13605 endoribonuclease SymE; Provisional
Probab=27.65 E-value=33 Score=21.15 Aligned_cols=10 Identities=0% Similarity=-0.379 Sum_probs=8.2
Q ss_pred HHHHhhCcCC
Q 034380 86 SLAIGLLNSV 95 (96)
Q Consensus 86 ~l~~~AG~~v 95 (96)
.||++|||.+
T Consensus 45 ~WLeeAGF~t 54 (113)
T PRK13605 45 QWLEAAGFAT 54 (113)
T ss_pred hhHHhhCCCC
Confidence 6899999864
No 296
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=27.40 E-value=39 Score=18.44 Aligned_cols=20 Identities=20% Similarity=0.046 Sum_probs=14.3
Q ss_pred CccCCHHHHHHHHHhhCcCC
Q 034380 76 AKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 76 g~~Rt~~e~~~l~~~AG~~v 95 (96)
|..-+.++..++|+..|+.+
T Consensus 16 G~~i~~~~i~~~L~~lg~~~ 35 (70)
T PF03484_consen 16 GIDISPEEIIKILKRLGFKV 35 (70)
T ss_dssp TS---HHHHHHHHHHTT-EE
T ss_pred CCCCCHHHHHHHHHHCCCEE
Confidence 67889999999999999875
No 297
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=27.39 E-value=1.2e+02 Score=19.71 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 23 DLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 23 ~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
.+..+++..+..+++.|++|+|.=.
T Consensus 89 ~~l~~~v~~i~~~~~~g~kVvVHC~ 113 (180)
T COG2453 89 EDLDKIVDFIEEALSKGKKVVVHCQ 113 (180)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 7788888999999998988888654
No 298
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=27.22 E-value=68 Score=19.76 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 21 GDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 21 ~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
..+...+.-+.+.+++..||+|+++-.
T Consensus 17 ~~~~i~~aa~~i~~~~~~gg~i~~~G~ 43 (138)
T PF13580_consen 17 QAEAIEKAADLIAEALRNGGRIFVCGN 43 (138)
T ss_dssp SHHHHHHHHHHHHHHHHTT--EEEEES
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 344556667777788889999999873
No 299
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=27.20 E-value=2.1e+02 Score=19.49 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCCEEEEEeeec
Q 034380 28 ILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 28 lL~~~~~al~~gg~l~I~e~~~ 49 (96)
.++.+.+.++++|+++++-...
T Consensus 200 ~~~~~~~~l~~~G~iv~~G~~~ 221 (280)
T TIGR03366 200 AVRACLESLDVGGTAVLAGSVF 221 (280)
T ss_pred HHHHHHHHhcCCCEEEEeccCC
Confidence 4666777889999999987654
No 300
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=27.16 E-value=26 Score=24.42 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380 19 DWGDDLCLKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
||=+. ....|..+++-|.|||.|++-|+..
T Consensus 186 DlYes-T~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 186 DLYES-TKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp -SHHH-HHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cchHH-HHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 44433 5678999999999999999888766
No 301
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=26.79 E-value=1.3e+02 Score=20.43 Aligned_cols=19 Identities=16% Similarity=-0.018 Sum_probs=14.6
Q ss_pred CCccCCHHHHHHHHHhhCc
Q 034380 75 GAKERTLEEFKSLAIGLLN 93 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~ 93 (96)
+|..+|.++..++++..|.
T Consensus 203 ~GGv~s~~d~~~~~~~~G~ 221 (253)
T PRK02083 203 SGGAGNLEHFVEAFTEGGA 221 (253)
T ss_pred ECCCCCHHHHHHHHHhCCc
Confidence 7888888888888776553
No 302
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=26.69 E-value=75 Score=24.50 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=25.8
Q ss_pred cceEeEe--cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380 7 KAQTIFM--KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEF 52 (96)
Q Consensus 7 ~~D~~ll--~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~ 52 (96)
.+|++++ ++....++. ..+.+.++-+.|++|+++|+...+.
T Consensus 159 ~ad~il~~G~Np~~s~~~-----~~~~~~~a~~~GakliviDPr~s~t 201 (567)
T cd02765 159 NAKTIIIWGSNILETQFQ-----DAEFFLDARENGAKIVVIDPVYSTT 201 (567)
T ss_pred cCcEEEEECCChHHccch-----hHHHHHHHHHcCCeEEEECCCCCcc
Confidence 3566665 555555543 3344444556799999999876654
No 303
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=26.48 E-value=72 Score=17.68 Aligned_cols=18 Identities=11% Similarity=-0.121 Sum_probs=14.0
Q ss_pred CCccCCHHHHHHHHHhhC
Q 034380 75 GAKERTLEEFKSLAIGLL 92 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG 92 (96)
+|.+=|.+|..+||++-+
T Consensus 26 ~~~~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 26 AGFEVSKAELSAWLRKED 43 (68)
T ss_pred cCCccCHHHHHHHHCCCC
Confidence 678888888888887643
No 304
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=26.40 E-value=1.2e+02 Score=20.51 Aligned_cols=29 Identities=7% Similarity=0.280 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380 21 GDDLCLKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 21 ~d~~~~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
+.+....+++.+++++.|.++++.+....
T Consensus 126 ~~~~~~~lv~~Lr~~~~~~~kllt~~~~~ 154 (255)
T cd06542 126 SNEAFVRLIKELRKYMGPTDKLLTIDGYG 154 (255)
T ss_pred hHHHHHHHHHHHHHHhCcCCcEEEEEecC
Confidence 45668899999999999878998888643
No 305
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=26.35 E-value=40 Score=24.08 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=24.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 19 DWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
|.-.+.-..+...+.+.|+|||.+++.-.+...
T Consensus 232 NI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~ 264 (295)
T PF06325_consen 232 NILADVLLELAPDIASLLKPGGYLILSGILEEQ 264 (295)
T ss_dssp ES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG
T ss_pred CCCHHHHHHHHHHHHHhhCCCCEEEEccccHHH
Confidence 444556678888899999999999987766543
No 306
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=26.35 E-value=29 Score=21.59 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.1
Q ss_pred ccccCCChHHHHHHHHHHHHhCC
Q 034380 15 WVLHDWGDDLCLKILKNCYDALP 37 (96)
Q Consensus 15 ~vlh~~~d~~~~~lL~~~~~al~ 37 (96)
..+|-|+-++..++-+++++||.
T Consensus 99 ~ymH~~~~gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 99 FYMHIWGVGDPAKLARKVRAALD 121 (123)
T ss_pred EEEEEEecCCHHHHHHHHHHHHh
Confidence 35799999999999999999875
No 307
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=25.70 E-value=1.3e+02 Score=20.55 Aligned_cols=30 Identities=7% Similarity=0.294 Sum_probs=19.9
Q ss_pred CCcceEeEe-ccc-ccCCChHHHHHHHHHHHH
Q 034380 5 VPKAQTIFM-KWV-LHDWGDDLCLKILKNCYD 34 (96)
Q Consensus 5 ~P~~D~~ll-~~v-lh~~~d~~~~~lL~~~~~ 34 (96)
+-+.|+++. .+. -..+++++..++.+.+.+
T Consensus 56 L~~~D~lV~~~~~~~~~l~~eq~~~l~~~V~~ 87 (215)
T cd03142 56 LAETDVLLWWGHIAHDEVKDEIVERVHRRVLD 87 (215)
T ss_pred HhcCCEEEEeCCCCcCcCCHHHHHHHHHHHHc
Confidence 334588876 343 367888888777776554
No 308
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=25.62 E-value=1.2e+02 Score=20.95 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=21.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380 19 DWGDDLCLKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
|-+.+.-...+..|.+-|+|||.| |+|.++
T Consensus 163 DadK~~Y~~y~~~~l~ll~~GGvi-v~DNvl 192 (247)
T PLN02589 163 DADKDNYINYHKRLIDLVKVGGVI-GYDNTL 192 (247)
T ss_pred cCCHHHhHHHHHHHHHhcCCCeEE-EEcCCC
Confidence 444666778888888999998775 446544
No 309
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.61 E-value=71 Score=16.72 Aligned_cols=16 Identities=19% Similarity=-0.035 Sum_probs=13.0
Q ss_pred CHHHHHHHHHhhCcCC
Q 034380 80 TLEEFKSLAIGLLNSV 95 (96)
Q Consensus 80 t~~e~~~l~~~AG~~v 95 (96)
..+...+.|+++|+.|
T Consensus 54 ~~~~~~~~L~~~G~~v 69 (69)
T cd04909 54 DRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCcC
Confidence 3568888999999976
No 310
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=25.60 E-value=86 Score=14.57 Aligned_cols=16 Identities=19% Similarity=-0.064 Sum_probs=12.8
Q ss_pred CHHHHHHHHHhhCcCC
Q 034380 80 TLEEFKSLAIGLLNSV 95 (96)
Q Consensus 80 t~~e~~~l~~~AG~~v 95 (96)
|.++.++++++-|+.+
T Consensus 5 ~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 5 KVSELKDELKKRGLST 20 (35)
T ss_pred cHHHHHHHHHHcCCCC
Confidence 5678899999888765
No 311
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=25.57 E-value=94 Score=21.30 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhh-hh----hhhhhhhhh-----cCCCCccCCHHHHHHHHHhhCcCC
Q 034380 26 LKILKNCYDALPEPGKIIVVESIMPEFPETDIISK-NI----SRLHITVSN-----LFPGAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~-~~----~~~dl~ml~-----~~~~g~~Rt~~e~~~l~~~AG~~v 95 (96)
..+|+.+++.|+|||.|...- |.+ . ..+. .. ....+.... .......|...+|++-+...|-.|
T Consensus 144 ~~fl~~~a~~Lk~gG~l~~aT---D~~--~-y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~yE~k~~~~g~~i 217 (227)
T COG0220 144 PEFLKLYARKLKPGGVLHFAT---DNE--E-YFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQKFRRLGHPV 217 (227)
T ss_pred HHHHHHHHHHccCCCEEEEEe---cCH--H-HHHHHHHHHHhcchhhhccccccccccccccCCCCcHHHHHHHhCCCce
Confidence 578999999999999996542 211 0 0000 00 000011111 012344577888998888888665
No 312
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=25.28 E-value=1.3e+02 Score=20.05 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380 22 DDLCLKILKNCYDALPEPGKIIVVESIMPE 51 (96)
Q Consensus 22 d~~~~~lL~~~~~al~~gg~l~I~e~~~~~ 51 (96)
.+--++++.-+++.|.|||.+.| |++-+.
T Consensus 69 s~~E~~l~~~l~~~lspg~~lfV-eYv~Dr 97 (192)
T COG4353 69 SELEVKLYKVLYNFLSPGGKLFV-EYVRDR 97 (192)
T ss_pred CHHHHHHHHHHHHhcCCCCceEE-EEEech
Confidence 34457889999999999998875 666654
No 313
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=25.16 E-value=88 Score=17.61 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=30.2
Q ss_pred HHHHHhCCCCCEEEEEeeecCCCCC------CchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHHHhh
Q 034380 30 KNCYDALPEPGKIIVVESIMPEFPE------TDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGL 91 (96)
Q Consensus 30 ~~~~~al~~gg~l~I~e~~~~~~~~------~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~~A 91 (96)
.-+.+.|.|+|.|.+-+.+..-+.. ...+ ......++... -|.+-+.++.++++++|
T Consensus 16 eAil~GlA~DGGLyvP~~iP~l~~~~l~~l~~~sy----~elA~~il~~f-~~~di~~~~L~~ii~~A 78 (79)
T PF14821_consen 16 EAILQGLAPDGGLYVPEEIPKLSKEELEELKNLSY----AELAFEILSPF-LGDDIPEEELKEIIEKA 78 (79)
T ss_dssp HHHHH-SBTTSB-EEESS-----HHHHHHHTTS-H----HHHHHHHHHHH-CCCCS-HHHHHHHHHHH
T ss_pred HHHHhCCCCCCeeEecCcCCCCCHHHHHHHHCCCH----HHHHHHHHHHH-HccCCCHHHHHHHHHHH
Confidence 3455688999999999875442211 0001 11223334444 47889999999998876
No 314
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=25.11 E-value=1.5e+02 Score=23.08 Aligned_cols=74 Identities=12% Similarity=-0.012 Sum_probs=36.2
Q ss_pred ecccccCCChHH---HHHHHHHHHHhCCCC-CEEEEEeeecCCCCCCchhhh---hhhhhhhhhhhcCCCCccCCHHHHH
Q 034380 13 MKWVLHDWGDDL---CLKILKNCYDALPEP-GKIIVVESIMPEFPETDIISK---NISRLHITVSNLFPGAKERTLEEFK 85 (96)
Q Consensus 13 l~~vlh~~~d~~---~~~lL~~~~~al~~g-g~l~I~e~~~~~~~~~~~~~~---~~~~~dl~ml~~~~~g~~Rt~~e~~ 85 (96)
..-..|.|.... +.++.+++. .-| |.|++-+.-.+.....+..+. .....++-.. ..|...+.+++.
T Consensus 425 ~~v~~~gg~~~~~~~~~~~~~~~~---~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipvi---asGG~g~~~d~~ 498 (538)
T PLN02617 425 YQCTVKGGREGRPIGAYELAKAVE---ELGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVI---ASSGAGTPEHFS 498 (538)
T ss_pred EEEEEecCcccCCCCHHHHHHHHH---hcCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEE---EECCCCCHHHHH
Confidence 334667775543 444555443 334 566666654444433321111 1111121111 267777788888
Q ss_pred HHHHhhC
Q 034380 86 SLAIGLL 92 (96)
Q Consensus 86 ~l~~~AG 92 (96)
++|+.+|
T Consensus 499 ~~~~~~~ 505 (538)
T PLN02617 499 DVFSKTN 505 (538)
T ss_pred HHHhcCC
Confidence 7777554
No 315
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.90 E-value=1.5e+02 Score=20.18 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 20 WGDDLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 20 ~~d~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
++|+.+.+++.....+-..|+||.++-
T Consensus 55 y~~eta~~La~e~v~~s~e~~rIacvS 81 (217)
T KOG3350|consen 55 YSDETARKLAAERVEASGEGSRIACVS 81 (217)
T ss_pred cCHHHHHHHHHHHHhhcccCceEEEEe
Confidence 367888899999888888899998876
No 316
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=24.62 E-value=79 Score=17.98 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHHhCCCC-CEEEEEee
Q 034380 19 DWGDDLCLKILKNCYDALPEP-GKIIVVES 47 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~g-g~l~I~e~ 47 (96)
+.++++..++++++.+.+... |.+.=+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~gg~v~~~~~ 41 (92)
T PF01250_consen 12 DLSEEEIKKLIERVKKIIEKNGGVVRSVEN 41 (92)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 578889999999999988874 55555554
No 317
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=24.35 E-value=39 Score=21.82 Aligned_cols=15 Identities=27% Similarity=0.047 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhCcCC
Q 034380 81 LEEFKSLAIGLLNSV 95 (96)
Q Consensus 81 ~~e~~~l~~~AG~~v 95 (96)
-+=+++|.++|||.|
T Consensus 48 NeVLkALc~eAGw~V 62 (150)
T PF05687_consen 48 NEVLKALCREAGWTV 62 (150)
T ss_pred HHHHHHHHHhCCEEE
Confidence 344578999999987
No 318
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=24.35 E-value=71 Score=24.19 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=25.2
Q ss_pred cceEeEe--cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380 7 KAQTIFM--KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEF 52 (96)
Q Consensus 7 ~~D~~ll--~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~ 52 (96)
.+|++++ ++.....+ .+.+++.++.+.|.+|+++|+...+.
T Consensus 157 ~ad~il~~G~Np~~s~p-----~~~~~~~~a~~~GaklivvDPr~t~t 199 (501)
T cd02766 157 NADLIVIWGINPAATNI-----HLMRIIQEARKRGAKVVVIDPYRTAT 199 (501)
T ss_pred cCCEEEEECCChhhhch-----hHHHHHHHHHHCCCEEEEECCCCCcc
Confidence 3566666 45554443 22344445556799999999876544
No 319
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.07 E-value=1.9e+02 Score=21.49 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=30.8
Q ss_pred cceEeEe-cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 7 KAQTIFM-KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 7 ~~D~~ll-~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
+||++++ .-.+-+-.+.++.+.++++++.-+|+.+|+|.--+..
T Consensus 27 ~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~ivv~GC~a~ 71 (420)
T PRK14339 27 EADLILINTCSVREKPVHKLFSEIGQFNKIKKEGAKIGVCGCTAS 71 (420)
T ss_pred cCCEEEEeccCccchHHHHHHHHHHHHHHhhCCCCeEEEECCccc
Confidence 3799998 3355667777788888887765567778777664433
No 320
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=24.02 E-value=81 Score=18.82 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=21.3
Q ss_pred hhhhcCCCCccCCHHHH-HHHHHhhCcCCC
Q 034380 68 TVSNLFPGAKERTLEEF-KSLAIGLLNSVK 96 (96)
Q Consensus 68 ~ml~~~~~g~~Rt~~e~-~~l~~~AG~~v~ 96 (96)
-|+..-+.-.-+|.+|| +...++.|..|+
T Consensus 65 Cml~~~PkCpy~~~eei~Kk~ie~~~i~Vv 94 (101)
T COG5561 65 CMLAFKPKCPYASAEEIAKKEIEKMGIKVV 94 (101)
T ss_pred eeeccCCCCCccCHHHHHHHHHHHhCCcEE
Confidence 34443246778888999 888999998764
No 321
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=23.99 E-value=1.3e+02 Score=20.87 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 21 GDDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 21 ~d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
+++.+.++++-+-.+++ ||++.|.=.
T Consensus 130 ~~~~v~~fv~i~e~~~~-~g~iaVHCk 155 (225)
T KOG1720|consen 130 TDAIVKEFVKIVENAEK-GGKIAVHCK 155 (225)
T ss_pred CHHHHHHHHHHHHHHHh-cCeEEEEec
Confidence 46677888998889988 999988764
No 322
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=23.97 E-value=2.7e+02 Score=19.65 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCCCEEEEEeeecC
Q 034380 27 KILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 27 ~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
..+....+.+++||+++++....+
T Consensus 250 ~~~~~~~~~l~~~G~~v~~G~~~~ 273 (355)
T cd08230 250 PLAFEALPALAPNGVVILFGVPGG 273 (355)
T ss_pred HHHHHHHHHccCCcEEEEEecCCC
Confidence 357778889999999998876543
No 323
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=23.83 E-value=1e+02 Score=16.45 Aligned_cols=17 Identities=12% Similarity=-0.105 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHhhCcCC
Q 034380 79 RTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 79 Rt~~e~~~l~~~AG~~v 95 (96)
.+.++..++.+++|+.+
T Consensus 25 ~~~e~~~~lA~~~Gf~f 41 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEF 41 (64)
T ss_pred CCHHHHHHHHHHcCCCC
Confidence 34555566666666543
No 324
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=23.68 E-value=54 Score=21.71 Aligned_cols=23 Identities=9% Similarity=0.371 Sum_probs=18.8
Q ss_pred EeEecccccCCChHHHHHHHHHHHH
Q 034380 10 TIFMKWVLHDWGDDLCLKILKNCYD 34 (96)
Q Consensus 10 ~~ll~~vlh~~~d~~~~~lL~~~~~ 34 (96)
||++++ |+|+.+++.+-+++|++
T Consensus 129 cYLmq~--~~wtpe~A~~~vr~iRp 151 (183)
T KOG1719|consen 129 CYLMQH--KNWTPEAAVEHVRKIRP 151 (183)
T ss_pred hhhhhh--cCCCHHHHHHHHHhcCc
Confidence 555554 89999999999999885
No 325
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=23.61 E-value=79 Score=20.98 Aligned_cols=20 Identities=5% Similarity=0.418 Sum_probs=16.9
Q ss_pred HhCCCCCEEEEEeeecCCCC
Q 034380 34 DALPEPGKIIVVESIMPEFP 53 (96)
Q Consensus 34 ~al~~gg~l~I~e~~~~~~~ 53 (96)
.++++|.|++|+|.++....
T Consensus 112 ~~l~~G~rVLIVDDvvtTGg 131 (191)
T TIGR01744 112 EFLSDQDRVLIIDDFLANGQ 131 (191)
T ss_pred HhCCCcCEEEEEEehhccCh
Confidence 45789999999999998764
No 326
>PF13397 DUF4109: Domain of unknown function (DUF4109)
Probab=23.50 E-value=74 Score=19.38 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=12.4
Q ss_pred cCCHHHHHHHHHhh
Q 034380 78 ERTLEEFKSLAIGL 91 (96)
Q Consensus 78 ~Rt~~e~~~l~~~A 91 (96)
-||.+|.++||+++
T Consensus 87 RRS~eEle~lL~Er 100 (105)
T PF13397_consen 87 RRSIEELEELLAER 100 (105)
T ss_pred hCCHHHHHHHHHHH
Confidence 48999999999876
No 327
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=23.44 E-value=1.1e+02 Score=21.28 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEe
Q 034380 24 LCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 24 ~~~~lL~~~~~al~~gg~l~I~e 46 (96)
...+....+.++|+.||||+++-
T Consensus 34 ~I~~av~~~~~~l~~ggrl~~~G 56 (257)
T cd05007 34 QIARAVDAAAERLRAGGRLIYVG 56 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEc
Confidence 34566677788888999998886
No 328
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.36 E-value=1.6e+02 Score=20.74 Aligned_cols=67 Identities=9% Similarity=0.122 Sum_probs=32.7
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHHHhhCc
Q 034380 18 HDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGLLN 93 (96)
Q Consensus 18 h~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~~AG~ 93 (96)
..|+.+++.++++.+.+. +...|=|++.+++.. . ..+.....++- ... ++...+..+++++++..+.
T Consensus 186 ~~~~~~~A~~~~~~l~~~----~l~~iEeP~~~~d~~-~-~~~L~~~~~ip--Ia~-~E~~~~~~~~~~~~~~~~~ 252 (316)
T cd03319 186 QGWTPEEAVELLRELAEL----GVELIEQPVPAGDDD-G-LAYLRDKSPLP--IMA-DESCFSAADAARLAGGGAY 252 (316)
T ss_pred CCcCHHHHHHHHHHHHhc----CCCEEECCCCCCCHH-H-HHHHHhcCCCC--EEE-eCCCCCHHHHHHHHhcCCC
Confidence 457777777777766542 333343333222111 0 11111112221 122 5677888888888876543
No 329
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=23.30 E-value=1.4e+02 Score=17.64 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHHhCCC-CCEEEEEeee
Q 034380 19 DWGDDLCLKILKNCYDALPE-PGKIIVVESI 48 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~-gg~l~I~e~~ 48 (96)
+.++++..++++++.+.+.. ||.+.-++..
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~gg~i~~~~~~ 43 (108)
T PRK00453 13 DLSEEQVKALVERFKGVITENGGTIHKVEDW 43 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 35889999999999998887 6777666653
No 330
>PRK13938 phosphoheptose isomerase; Provisional
Probab=23.25 E-value=1.2e+02 Score=20.23 Aligned_cols=22 Identities=5% Similarity=0.031 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEEe
Q 034380 25 CLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I~e 46 (96)
..++...+.++++.||+|+++-
T Consensus 31 ~~~~a~~~~~~l~~g~rI~i~G 52 (196)
T PRK13938 31 ARAIGDRLIAGYRAGARVFMCG 52 (196)
T ss_pred HHHHHHHHHHHHHCCCEEEEEe
Confidence 4455566666788999999976
No 331
>PRK13510 sulfur transfer complex subunit TusB; Provisional
Probab=23.06 E-value=84 Score=18.43 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=15.4
Q ss_pred HHHHHHHHhCCCCCEEEEEee
Q 034380 27 KILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 27 ~lL~~~~~al~~gg~l~I~e~ 47 (96)
.-|+.|.+.+.+|-.|+.+|.
T Consensus 12 ~~l~~~l~~~~~~D~iLLieD 32 (95)
T PRK13510 12 TDFAALLRLLKEGDDLLLLQD 32 (95)
T ss_pred hHHHHHHHhcCCCCEEEEehH
Confidence 467788888888877776653
No 332
>COG1438 ArgR Arginine repressor [Transcription]
Probab=23.04 E-value=75 Score=20.57 Aligned_cols=21 Identities=29% Similarity=0.031 Sum_probs=17.1
Q ss_pred CCccCCHHHHHHHHHhhCcCC
Q 034380 75 GAKERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG~~v 95 (96)
.-+-.|.+|..+.|++.|+.|
T Consensus 17 ~~~i~TQ~Elv~~L~~~Gi~v 37 (150)
T COG1438 17 EEKISTQEELVELLQEEGIEV 37 (150)
T ss_pred hCCCCCHHHHHHHHHHcCCeE
Confidence 567788888888888888875
No 333
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=22.88 E-value=1e+02 Score=16.58 Aligned_cols=29 Identities=14% Similarity=-0.005 Sum_probs=20.8
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380 17 LHDWGDDLCLKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 17 lh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
..+.+.++|.++|++ -.+.|..+|=..-.
T Consensus 3 ~g~isr~~Ae~~L~~----~~~~G~FLvR~s~~ 31 (77)
T PF00017_consen 3 HGFISRQEAERLLMQ----GKPDGTFLVRPSSS 31 (77)
T ss_dssp EESSHHHHHHHHHHT----TSSTTEEEEEEESS
T ss_pred CCCCCHHHHHHHHHh----cCCCCeEEEEeccc
Confidence 345677889999987 45677888777643
No 334
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=22.87 E-value=62 Score=19.13 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=19.3
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCE
Q 034380 18 HDWGDDLCLKILKNCYDALPEPGK 41 (96)
Q Consensus 18 h~~~d~~~~~lL~~~~~al~~gg~ 41 (96)
..|++++-+.||+.+..--...|+
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~ 28 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGK 28 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCC
Confidence 359999999999999887555555
No 335
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=22.86 E-value=98 Score=22.18 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=25.1
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCC-EEEEEee
Q 034380 15 WVLHDWGDDLCLKILKNCYDALPEPG-KIIVVES 47 (96)
Q Consensus 15 ~vlh~~~d~~~~~lL~~~~~al~~gg-~l~I~e~ 47 (96)
+--|.|+++.+.++++.+.+..+.+| .++|.-+
T Consensus 157 s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttS 190 (311)
T PF06258_consen 157 SKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTS 190 (311)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 44589999999999999988877654 6666543
No 336
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=22.84 E-value=72 Score=21.11 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=26.3
Q ss_pred eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC
Q 034380 9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPE 54 (96)
Q Consensus 9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~ 54 (96)
..++.+.--.++..... ....+.+|-+|+|+|.++.....
T Consensus 98 p~v~vRK~~k~~g~~~~------~~g~~~~g~rVlIVDDVitTGgS 137 (187)
T PRK13810 98 PLLIVRKSVKDYGTGSR------FVGDLKPEDRIVMLEDVTTSGGS 137 (187)
T ss_pred CEEEEecCCCccCCCce------EEccCCCcCEEEEEEeccCCChH
Confidence 34555555555554321 23467789999999999987653
No 337
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=22.65 E-value=60 Score=22.50 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=7.2
Q ss_pred CCCEEEEEeeecCC
Q 034380 38 EPGKIIVVESIMPE 51 (96)
Q Consensus 38 ~gg~l~I~e~~~~~ 51 (96)
|||.-+|+|...++
T Consensus 92 P~GvaiiVe~lTDN 105 (238)
T TIGR01033 92 PGGVAIIVECLTDN 105 (238)
T ss_pred CCceEEEEEEecCC
Confidence 45555555554443
No 338
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=22.51 E-value=1.1e+02 Score=18.81 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.9
Q ss_pred CCc-cCCHHHHHHHHHhhCcCC
Q 034380 75 GAK-ERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 ~g~-~Rt~~e~~~l~~~AG~~v 95 (96)
+|. .-|.++..++++.+|..|
T Consensus 15 gG~~~pTaddI~kIL~AaGveV 36 (112)
T PTZ00373 15 GGNENPTKKEVKNVLSAVNADV 36 (112)
T ss_pred cCCCCCCHHHHHHHHHHcCCCc
Confidence 455 589999999999999876
No 339
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=22.50 E-value=1.3e+02 Score=20.03 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeee
Q 034380 24 LCLKILKNCYDALPEPGKIIVVESI 48 (96)
Q Consensus 24 ~~~~lL~~~~~al~~gg~l~I~e~~ 48 (96)
...+.-..+.+++..|++|+++-.-
T Consensus 26 ~I~~aa~~i~~~l~~G~Kvl~cGNG 50 (176)
T COG0279 26 AIERAAQLLVQSLLNGNKVLACGNG 50 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCC
Confidence 3455666677788899999999753
No 340
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=22.23 E-value=1.1e+02 Score=18.73 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=17.9
Q ss_pred CCc-cCCHHHHHHHHHhhCcCC
Q 034380 75 GAK-ERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 75 ~g~-~Rt~~e~~~l~~~AG~~v 95 (96)
+|. .-|.++..++++.+|..|
T Consensus 13 ~g~~~pta~dI~~IL~AaGvev 34 (113)
T PLN00138 13 GGNTCPSAEDLKDILGSVGADA 34 (113)
T ss_pred cCCCCCCHHHHHHHHHHcCCcc
Confidence 455 699999999999999876
No 341
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=22.17 E-value=1.4e+02 Score=21.86 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=16.6
Q ss_pred HHHHHHhCCCCCEEEEEeeec
Q 034380 29 LKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 29 L~~~~~al~~gg~l~I~e~~~ 49 (96)
+....++|++||+++++-...
T Consensus 242 ~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 242 LEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred HHHHHHHHhcCCEEEEECCCC
Confidence 445566888999999998874
No 342
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=22.09 E-value=98 Score=22.71 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeec
Q 034380 25 CLKILKNCYDALPEPGKIIVVESIM 49 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I~e~~~ 49 (96)
.-++|..+...|+..|||+++-.+.
T Consensus 232 GG~~lDavl~nM~~~gri~~CG~IS 256 (343)
T KOG1196|consen 232 GGKMLDAVLLNMNLHGRIAVCGMIS 256 (343)
T ss_pred CcHHHHHHHHhhhhccceEeeeeeh
Confidence 3567777778899999999999765
No 343
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=21.85 E-value=1.3e+02 Score=19.79 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEe
Q 034380 24 LCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 24 ~~~~lL~~~~~al~~gg~l~I~e 46 (96)
...+.++++.+.|+.|+.++|.=
T Consensus 83 ~~~~~~~~~~~~L~~G~~l~IFP 105 (210)
T cd07986 83 KNRESLREALRHLKNGGALIIFP 105 (210)
T ss_pred hhHHHHHHHHHHHhCCCEEEEEC
Confidence 46778999999999988777653
No 344
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=21.75 E-value=85 Score=15.48 Aligned_cols=16 Identities=19% Similarity=-0.058 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHhhCcC
Q 034380 79 RTLEEFKSLAIGLLNS 94 (96)
Q Consensus 79 Rt~~e~~~l~~~AG~~ 94 (96)
.-..+|..++..+|..
T Consensus 26 ~~p~~w~~l~~~~~is 41 (42)
T cd00132 26 NLPPDLQSLFQTAGIS 41 (42)
T ss_pred CCCHHHHHHHHHccCC
Confidence 3356999999998864
No 345
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=21.68 E-value=85 Score=14.73 Aligned_cols=17 Identities=24% Similarity=-0.060 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHhhCcCC
Q 034380 79 RTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 79 Rt~~e~~~l~~~AG~~v 95 (96)
.+..|.++++++-|+.+
T Consensus 4 l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 4 LTVAELKEELKERGLST 20 (35)
T ss_dssp SHHHHHHHHHHHTTS-S
T ss_pred CcHHHHHHHHHHCCCCC
Confidence 45788999999988765
No 346
>PRK07680 late competence protein ComER; Validated
Probab=21.52 E-value=2.4e+02 Score=19.29 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=21.9
Q ss_pred cceEeEecccccCCChHHHHHHHHHHHHhCCCCCE
Q 034380 7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGK 41 (96)
Q Consensus 7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~ 41 (96)
.+|++++.- ++.+...+++.+.+.++++..
T Consensus 62 ~aDiVilav-----~p~~~~~vl~~l~~~l~~~~~ 91 (273)
T PRK07680 62 QSDLIFICV-----KPLDIYPLLQKLAPHLTDEHC 91 (273)
T ss_pred hCCEEEEec-----CHHHHHHHHHHHHhhcCCCCE
Confidence 357776654 677788889988888877653
No 347
>PRK10347 cell filamentation protein Fic; Provisional
Probab=21.28 E-value=97 Score=20.90 Aligned_cols=32 Identities=22% Similarity=0.073 Sum_probs=25.1
Q ss_pred hhhhhhhhcCCCCccCCHHHHHH-HHHhhCcCC
Q 034380 64 RLHITVSNLFPGAKERTLEEFKS-LAIGLLNSV 95 (96)
Q Consensus 64 ~~dl~ml~~~~~g~~Rt~~e~~~-l~~~AG~~v 95 (96)
+-+++++..+.+|-.||..-|-+ ++..||+.+
T Consensus 128 ~~eln~iHPFREGNGRt~r~f~~~la~~aG~~i 160 (200)
T PRK10347 128 YCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQL 160 (200)
T ss_pred HHHHhHhccccCCCHHHHHHHHHHHHHHcCCCC
Confidence 44677888887999999999955 466899875
No 348
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=21.26 E-value=1.3e+02 Score=23.84 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 25 CLKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 25 ~~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
-.++++-+.++++.||+++|--+-+.
T Consensus 394 E~~L~~vi~~t~~rGGKvLIP~fAVG 419 (637)
T COG1782 394 EKELIKVINDTLKRGGKVLIPVFAVG 419 (637)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeeecc
Confidence 35677778899999999999765444
No 349
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=21.25 E-value=1.5e+02 Score=20.75 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=20.0
Q ss_pred ccCCCh----HHHHHHHHHHHHhCCCCCEEEEEe
Q 034380 17 LHDWGD----DLCLKILKNCYDALPEPGKIIVVE 46 (96)
Q Consensus 17 lh~~~d----~~~~~lL~~~~~al~~gg~l~I~e 46 (96)
+-+|.- +-..++|.+++++|++++.|.|.+
T Consensus 181 ~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 181 MTSWQGEGSGGPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp SSSTTS---HHHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred cccccCCCCCCcHHHHHHHHHhhCCCCcEEEEec
Confidence 446644 567899999999996666666633
No 350
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=21.22 E-value=69 Score=16.62 Aligned_cols=19 Identities=26% Similarity=0.062 Sum_probs=14.5
Q ss_pred ccCCHHHHHHHHHhhCcCC
Q 034380 77 KERTLEEFKSLAIGLLNSV 95 (96)
Q Consensus 77 ~~Rt~~e~~~l~~~AG~~v 95 (96)
...+.++..+.|+++||.+
T Consensus 7 ~g~~~~~a~~~l~~~g~~~ 25 (63)
T PF03793_consen 7 VGMTYDEAKSILEAAGLTV 25 (63)
T ss_dssp TTSBHHHHHHHHHHTT-EE
T ss_pred CCCcHHHHHHHHHHCCCEE
Confidence 3478899999999999853
No 351
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=21.13 E-value=2.4e+02 Score=18.95 Aligned_cols=18 Identities=11% Similarity=-0.176 Sum_probs=15.9
Q ss_pred CCccCCHHHHHHHHHhhC
Q 034380 75 GAKERTLEEFKSLAIGLL 92 (96)
Q Consensus 75 ~g~~Rt~~e~~~l~~~AG 92 (96)
+|..++.++..++++..|
T Consensus 199 ~GGi~~~~di~~~l~~~g 216 (243)
T cd04731 199 SGGAGKPEHFVEAFEEGG 216 (243)
T ss_pred eCCCCCHHHHHHHHHhCC
Confidence 899999999999998754
No 352
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=21.11 E-value=1.1e+02 Score=21.14 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380 22 DDLCLKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 22 d~~~~~lL~~~~~al~~gg~l~I~e~ 47 (96)
++...-.|-+..+.||+.|.+.|.+.
T Consensus 71 eE~~~p~lwRfw~~lP~~G~i~IF~r 96 (230)
T TIGR03707 71 RERTQWYFQRYVQHLPAAGEIVLFDR 96 (230)
T ss_pred HHHcChHHHHHHHhCCCCCeEEEEeC
Confidence 34556789999999999999999985
No 353
>PRK14755 transcriptional regulatory protein PufK; Provisional
Probab=21.08 E-value=51 Score=14.44 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=8.3
Q ss_pred HHHHHhCCCCCEE
Q 034380 30 KNCYDALPEPGKI 42 (96)
Q Consensus 30 ~~~~~al~~gg~l 42 (96)
+++++.|++||..
T Consensus 10 qhvasvlrsgg~~ 22 (26)
T PRK14755 10 QHVASVLRSGGXX 22 (26)
T ss_pred HHHHHHHHcCCcc
Confidence 4566677777653
No 354
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=21.01 E-value=81 Score=15.71 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=10.1
Q ss_pred ChHHHHHHHHHHH
Q 034380 21 GDDLCLKILKNCY 33 (96)
Q Consensus 21 ~d~~~~~lL~~~~ 33 (96)
+|++|.+.|..++
T Consensus 2 ~e~~c~~~l~~~R 14 (46)
T PF12760_consen 2 DEEACREYLEEIR 14 (46)
T ss_pred CHHHHHHHHHHhc
Confidence 5778888888765
No 355
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=20.80 E-value=56 Score=16.04 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=5.0
Q ss_pred CHHHHHHHHHh
Q 034380 80 TLEEFKSLAIG 90 (96)
Q Consensus 80 t~~e~~~l~~~ 90 (96)
|..+...||..
T Consensus 26 s~~Qi~~WF~N 36 (40)
T PF05920_consen 26 SRKQISNWFIN 36 (40)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34455555544
No 356
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=20.69 E-value=4.6e+02 Score=21.15 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=32.3
Q ss_pred CCCEEEEEee--ecCCCCCCchhhhhhhhhhhhhhhcCCC---CccCCHHHHHHHHHhh
Q 034380 38 EPGKIIVVES--IMPEFPETDIISKNISRLHITVSNLFPG---AKERTLEEFKSLAIGL 91 (96)
Q Consensus 38 ~gg~l~I~e~--~~~~~~~~~~~~~~~~~~dl~ml~~~~~---g~~Rt~~e~~~l~~~A 91 (96)
.--.++++|. ++..+... .+-+||+.+|.+.+| -..|+++|+++++.-|
T Consensus 408 nLPV~faIDRAGivG~DG~T-----H~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta 461 (627)
T COG1154 408 NLPVTFAIDRAGIVGADGPT-----HQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTA 461 (627)
T ss_pred cCCeEEEEecCcccCCCCCc-----cccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHH
Confidence 3345667773 34443322 245799999876655 4579999999998754
No 357
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=20.54 E-value=1.3e+02 Score=22.89 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCCCEEEEEee
Q 034380 26 LKILKNCYDALPEPGKIIVVES 47 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~ 47 (96)
.+|++.+.+.|+|||.++ +|.
T Consensus 361 r~Ii~~a~~~LkpgG~li-lEi 381 (423)
T PRK14966 361 RTLAQGAPDRLAEGGFLL-LEH 381 (423)
T ss_pred HHHHHHHHHhcCCCcEEE-EEE
Confidence 477888888999999865 554
No 358
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=20.51 E-value=53 Score=25.39 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=11.8
Q ss_pred CCChHHHHHHHHH
Q 034380 19 DWGDDLCLKILKN 31 (96)
Q Consensus 19 ~~~d~~~~~lL~~ 31 (96)
+|+|..+.+|+++
T Consensus 2 hW~~~~A~~l~~r 14 (515)
T TIGR00467 2 HWADVIAEKLKKE 14 (515)
T ss_pred CCcHHHHHHHHhh
Confidence 7999999999986
No 359
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.43 E-value=81 Score=16.01 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhCcCC
Q 034380 81 LEEFKSLAIGLLNSV 95 (96)
Q Consensus 81 ~~e~~~l~~~AG~~v 95 (96)
.+...+.|+++|++|
T Consensus 50 ~~~~~~~L~~~G~~v 64 (65)
T cd04882 50 IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHCCceE
Confidence 778899999999876
No 360
>PRK00110 hypothetical protein; Validated
Probab=20.34 E-value=85 Score=21.88 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=7.4
Q ss_pred CCCEEEEEeeecCC
Q 034380 38 EPGKIIVVESIMPE 51 (96)
Q Consensus 38 ~gg~l~I~e~~~~~ 51 (96)
|||.-+|+|...++
T Consensus 92 P~GvaiiVe~lTDN 105 (245)
T PRK00110 92 PGGVAIIVEALTDN 105 (245)
T ss_pred CCCeEEEEEEecCC
Confidence 45555555555443
No 361
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=20.33 E-value=1.1e+02 Score=22.72 Aligned_cols=74 Identities=7% Similarity=-0.037 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEE----EEeeecCCCC--CCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHHHhhC
Q 034380 19 DWGDDLCLKILKNCYDALPEPGKII----VVESIMPEFP--ETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGLL 92 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~gg~l~----I~e~~~~~~~--~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~~AG 92 (96)
..++++..+++++++..--|.++-+ ..++.++... ..| .......+...+... .+..-....+.+.++.||
T Consensus 103 ~I~~~dv~~~~~~a~~~~~~~~~~i~~~~p~~~~vD~~~~v~~P-~g~~g~~l~~~v~lv--~~~~~~~~~~~~a~~~aG 179 (420)
T PRK09472 103 EVTQEDVENVVHTAKSVRVRDEHRILHVIPQEYAIDYQEGIKNP-VGLSGVRMQAKVHLI--TCHNDMAKNIVKAVERCG 179 (420)
T ss_pred eeCHHHHHHHHHHhhccCCCCCCEEEEEeceeEEECCCCCcCCC-CCCcccEEEEEEEEE--EEchHHHHHHHHHHHHcC
Confidence 4778999999998875433444422 2345566543 122 111122222222222 355566777788899999
Q ss_pred cCC
Q 034380 93 NSV 95 (96)
Q Consensus 93 ~~v 95 (96)
++|
T Consensus 180 l~v 182 (420)
T PRK09472 180 LKV 182 (420)
T ss_pred CeE
Confidence 886
No 362
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=20.29 E-value=2.5e+02 Score=24.44 Aligned_cols=65 Identities=8% Similarity=-0.006 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHHHh
Q 034380 19 DWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIG 90 (96)
Q Consensus 19 ~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~~ 90 (96)
|.+ +++.++|+-+.+.=..-|.-.|+|.+....... ...+....+....-|+.++.++|+.++..
T Consensus 875 D~T-~~Aq~~ls~V~~~~~~fg~~~iidvlrGs~~~~------i~~~~~d~l~~~G~gk~~s~~~~~~li~~ 939 (1195)
T PLN03137 875 DVT-EIARQLVELVKLTGERFSSAHILEVYRGSLNQY------VKKHRHETLSLHGAGKHLSKGEASRILHY 939 (1195)
T ss_pred ccH-HHHHHHHHHHHHhccCcchhheehhhhccccHH------HHHhCcccccccCccccCCHHHHHHHHHH
Confidence 444 568888887776433457778888877654321 12223333433446899999999999863
No 363
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=20.29 E-value=1.5e+02 Score=17.28 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=16.0
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecC
Q 034380 26 LKILKNCYDALPEPGKIIVVESIMP 50 (96)
Q Consensus 26 ~~lL~~~~~al~~gg~l~I~e~~~~ 50 (96)
...|..+..+++.||.+++.=+-.+
T Consensus 25 pnal~a~~gtv~gGGllill~p~~~ 49 (92)
T PF08351_consen 25 PNALAALAGTVRGGGLLILLLPPWE 49 (92)
T ss_dssp HHHHHHHHTTB-TT-EEEEEES-GG
T ss_pred HHHHHHHhcceecCeEEEEEcCCHH
Confidence 3457777888999999888755433
No 364
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=20.18 E-value=81 Score=19.81 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=13.5
Q ss_pred HHHHHHHHhCCC-------CCEEEEE
Q 034380 27 KILKNCYDALPE-------PGKIIVV 45 (96)
Q Consensus 27 ~lL~~~~~al~~-------gg~l~I~ 45 (96)
-|.++|+.+|++ .|++++.
T Consensus 93 II~~R~R~vL~~fnmscd~~GkLIlk 118 (125)
T PF09771_consen 93 IIASRCRSVLADFNMSCDDSGKLILK 118 (125)
T ss_pred HHHHHHHHHHhhhccCcCCCCcEEec
Confidence 357888888875 5777653
Done!