BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034382
(96 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224090693|ref|XP_002309062.1| predicted protein [Populus trichocarpa]
gi|222855038|gb|EEE92585.1| predicted protein [Populus trichocarpa]
Length = 792
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 90/95 (94%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
MAS++NMQTR+ RRL ++SL+YW+IEFL+RQPKE++YRAL+LRFIKDR AALLLVEVGLQ
Sbjct: 697 MASLINMQTRVVRRLCSSSLQYWMIEFLKRQPKEKKYRALILRFIKDRVAALLLVEVGLQ 756
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
ATAWVS+G QIGDEV+V+VEEAHPRDDII LKEVV
Sbjct: 757 ATAWVSLGTQIGDEVQVRVEEAHPRDDIISLKEVV 791
>gi|225440376|ref|XP_002266667.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Vitis
vinifera]
Length = 792
Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 87/95 (91%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
MA+ VNM R+A+RL ++SLRYWI+EF+RRQPKE+++RALVLRFIKDR AALLL+EVGLQ
Sbjct: 698 MAASVNMHARLAKRLCSSSLRYWILEFIRRQPKEKKFRALVLRFIKDRIAALLLMEVGLQ 757
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
A+AWVS+G QIGDEVEVKVEEAHPRDD++ LKEV
Sbjct: 758 ASAWVSLGKQIGDEVEVKVEEAHPRDDVLSLKEVT 792
>gi|297740364|emb|CBI30546.3| unnamed protein product [Vitis vinifera]
Length = 720
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 87/95 (91%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
MA+ VNM R+A+RL ++SLRYWI+EF+RRQPKE+++RALVLRFIKDR AALLL+EVGLQ
Sbjct: 626 MAASVNMHARLAKRLCSSSLRYWILEFIRRQPKEKKFRALVLRFIKDRIAALLLMEVGLQ 685
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
A+AWVS+G QIGDEVEVKVEEAHPRDD++ LKEV
Sbjct: 686 ASAWVSLGKQIGDEVEVKVEEAHPRDDVLSLKEVT 720
>gi|255586753|ref|XP_002533996.1| ribonuclease II, putative [Ricinus communis]
gi|223526007|gb|EEF28385.1| ribonuclease II, putative [Ricinus communis]
Length = 731
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 84/96 (87%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
MAS++NMQ R+ R L N++LRYWIIEFL+RQPKER+YRAL+LRFIKDR AALLLVEVG Q
Sbjct: 635 MASMINMQARVVRSLCNSNLRYWIIEFLKRQPKERRYRALILRFIKDRIAALLLVEVGFQ 694
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR 96
A+AWVS G IGDE++V+V+EAHPRDD + L EVV+
Sbjct: 695 ASAWVSTGVHIGDEIQVQVKEAHPRDDFVSLTEVVQ 730
>gi|356566110|ref|XP_003551278.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Glycine max]
Length = 783
Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 85/96 (88%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
+A++VN R R+L ++SLRYWI+E+LRRQPKER YRALVLRF+KDR AALLL+EVG Q
Sbjct: 687 IAAVVNENVRTVRKLCSSSLRYWILEYLRRQPKERTYRALVLRFLKDRIAALLLLEVGFQ 746
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR 96
A+AW+ VG QIGDEVEVKVEEAHPRDDI++LKEVV+
Sbjct: 747 ASAWIPVGMQIGDEVEVKVEEAHPRDDILFLKEVVK 782
>gi|449520221|ref|XP_004167132.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease II,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 809
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/96 (70%), Positives = 88/96 (91%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
MA+ VN+ T++ARRLS+ SLRYWI+E+LRRQPKE +YRAL+LRFIKDR A LLLVEVG+Q
Sbjct: 714 MAATVNINTKLARRLSSVSLRYWILEYLRRQPKENRYRALILRFIKDRNALLLLVEVGIQ 773
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR 96
A+AWVS+G QIGDEV+V+VE+AHPRDD++ LKE+++
Sbjct: 774 ASAWVSLGVQIGDEVQVRVEDAHPRDDVLSLKEIIQ 809
>gi|449448900|ref|XP_004142203.1| PREDICTED: ribonuclease II, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 809
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/96 (70%), Positives = 88/96 (91%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
MA+ VN+ T++ARRLS+ SLRYWI+E+LRRQPKE +YRAL+LRFIKDR A LLLVEVG+Q
Sbjct: 714 MAATVNINTKLARRLSSVSLRYWILEYLRRQPKENRYRALILRFIKDRNALLLLVEVGIQ 773
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR 96
A+AWVS+G QIGDEV+V+VE+AHPRDD++ LKE+++
Sbjct: 774 ASAWVSLGVQIGDEVQVRVEDAHPRDDVLSLKEIIQ 809
>gi|7406421|emb|CAB85530.1| ribonuclease II-like protein [Arabidopsis thaliana]
Length = 782
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/95 (70%), Positives = 83/95 (87%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
+A+ VNMQ+++ R+LSNT LRYW+IEFLRRQ K ++Y ALVLRF+KDR A+LLLVEVG Q
Sbjct: 688 IAASVNMQSKVVRKLSNTGLRYWVIEFLRRQEKGKKYTALVLRFVKDRIASLLLVEVGFQ 747
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
ATAWVS G Q+GDE+EV+VEEAHPRDD+I KEV+
Sbjct: 748 ATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 782
>gi|42567593|ref|NP_195845.2| Ribonuclease II/R family protein [Arabidopsis thaliana]
gi|75127176|sp|Q6NQJ6.1|RNR1_ARATH RecName: Full=Ribonuclease II, chloroplastic/mitochondrial;
Short=AtmtRNaseII; Short=RNase II; AltName: Full=Protein
EMBRYO DEFECTIVE 2730; AltName: Full=Ribonucleotide
reductase 1; Flags: Precursor
gi|34222082|gb|AAQ62877.1| At5g02250 [Arabidopsis thaliana]
gi|51970908|dbj|BAD44146.1| ribonuclease II-like protein [Arabidopsis thaliana]
gi|332003067|gb|AED90450.1| Ribonuclease II/R family protein [Arabidopsis thaliana]
Length = 803
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/95 (70%), Positives = 83/95 (87%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
+A+ VNMQ+++ R+LSNT LRYW+IEFLRRQ K ++Y ALVLRF+KDR A+LLLVEVG Q
Sbjct: 709 IAASVNMQSKVVRKLSNTGLRYWVIEFLRRQEKGKKYTALVLRFVKDRIASLLLVEVGFQ 768
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
ATAWVS G Q+GDE+EV+VEEAHPRDD+I KEV+
Sbjct: 769 ATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 803
>gi|297806163|ref|XP_002870965.1| EMB2730 [Arabidopsis lyrata subsp. lyrata]
gi|297316802|gb|EFH47224.1| EMB2730 [Arabidopsis lyrata subsp. lyrata]
Length = 803
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 65/95 (68%), Positives = 83/95 (87%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
+A+ VNMQ+++ R+LSN+ LRYW+IEFLRRQ K ++Y AL+LRF+KDR A+LLLVEVG Q
Sbjct: 709 IAASVNMQSKVVRKLSNSGLRYWVIEFLRRQEKGKKYTALILRFVKDRIASLLLVEVGFQ 768
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
ATAWVS G Q+GDE+EV+VEEAHPRDD+I KEV+
Sbjct: 769 ATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 803
>gi|242059199|ref|XP_002458745.1| hypothetical protein SORBIDRAFT_03g039500 [Sorghum bicolor]
gi|241930720|gb|EES03865.1| hypothetical protein SORBIDRAFT_03g039500 [Sorghum bicolor]
Length = 782
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
M I +M ++ARRL + SLRYW++E+LRRQPK R+YRAL+L+FIKDR ALLLVEVG+Q
Sbjct: 682 MTFIASMHVKVARRLHSNSLRYWLLEYLRRQPKGRKYRALILKFIKDRMGALLLVEVGMQ 741
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
T +S G ++GDEV V VE AHPRDDI+ ++EVV
Sbjct: 742 ITTTISRG-KVGDEVSVTVETAHPRDDILSVREVV 775
>gi|414879754|tpg|DAA56885.1| TPA: hypothetical protein ZEAMMB73_060871 [Zea mays]
Length = 783
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
M I +M ++ARRL + SLRYW++E+LRRQPK R+YRAL+L+F+KDR ALLLVEVG+Q
Sbjct: 683 MTFIASMHVKVARRLHSNSLRYWLLEYLRRQPKGRKYRALILKFVKDRMGALLLVEVGMQ 742
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
T +S G ++GD+V V VE AHPRDDI+ ++EVV
Sbjct: 743 VTTTISRG-KVGDQVSVTVETAHPRDDILSVREVV 776
>gi|414879757|tpg|DAA56888.1| TPA: hypothetical protein ZEAMMB73_060871 [Zea mays]
Length = 650
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
M I +M ++ARRL + SLRYW++E+LRRQPK R+YRAL+L+F+KDR ALLLVEVG+Q
Sbjct: 550 MTFIASMHVKVARRLHSNSLRYWLLEYLRRQPKGRKYRALILKFVKDRMGALLLVEVGMQ 609
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
T +S G ++GD+V V VE AHPRDDI+ ++EVV
Sbjct: 610 VTTTISRG-KVGDQVSVTVETAHPRDDILSVREVV 643
>gi|414871490|tpg|DAA50047.1| TPA: hypothetical protein ZEAMMB73_947913 [Zea mays]
Length = 671
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
M I NM ++ARRL + SLRYW++E+LRRQPK R+YRAL+L+F+KDR ALLLVEVG+Q
Sbjct: 63 MTFIANMHVKVARRLHSNSLRYWLLEYLRRQPKGRKYRALILKFVKDRMGALLLVEVGMQ 122
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 93
T +S G ++GD+V V VE AHPRDDI+ + E
Sbjct: 123 VTTTISRG-KVGDQVSVTVEIAHPRDDILSVGE 154
>gi|218189347|gb|EEC71774.1| hypothetical protein OsI_04386 [Oryza sativa Indica Group]
gi|222619521|gb|EEE55653.1| hypothetical protein OsJ_04037 [Oryza sativa Japonica Group]
Length = 774
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
M I +M ++ARRL + +LRYW++E+LRRQPK ++Y+AL+L+FIKDR A LL++EVG+Q
Sbjct: 679 MTFIASMHVKVARRLHSNNLRYWLLEYLRRQPKGKKYKALILKFIKDRLATLLVIEVGIQ 738
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
ATA VS G ++GDEV V VE AHPRDDI+ + E+
Sbjct: 739 ATAVVSTG-KVGDEVSVVVEAAHPRDDILSVTEIT 772
>gi|357134851|ref|XP_003569029.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Brachypodium
distachyon]
Length = 783
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 75/94 (79%), Gaps = 1/94 (1%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
M I +M ++AR+L + SLRYW++E+LRRQPK R+++AL+L+FIKDR A LLLVEVG+Q
Sbjct: 686 MTFIASMHVKVARKLHSNSLRYWLLEYLRRQPKGRKFKALILKFIKDRMATLLLVEVGIQ 745
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 94
AT V+ G ++GDEV V VE AHPRDDI+ + E+
Sbjct: 746 ATTVVAAG-KVGDEVSVVVEMAHPRDDILSVTEI 778
>gi|168012160|ref|XP_001758770.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689907|gb|EDQ76276.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 717
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 67/92 (72%)
Query: 3 SIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQAT 62
++VN+Q+R AR+L +S RYW IE+LRRQP+ Q++ALVLRF+++ +L+ ++G+QA
Sbjct: 626 AVVNLQSRQARKLQVSSTRYWAIEYLRRQPRGTQFQALVLRFVREGEPLVLIEKLGIQAQ 685
Query: 63 AWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 94
A + +G E+ V VE A+PR+D I L++V
Sbjct: 686 ANLVRNTAVGSEITVIVEAAYPRNDFIILRQV 717
>gi|302769946|ref|XP_002968392.1| hypothetical protein SELMODRAFT_145357 [Selaginella moellendorffii]
gi|300164036|gb|EFJ30646.1| hypothetical protein SELMODRAFT_145357 [Selaginella moellendorffii]
Length = 668
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 4 IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATA 63
+ N++T+ AR+L N S RYW+IE+LRR+P++ Y A V+R +KD + + EVGL +
Sbjct: 564 LANLKTKEARKLGNASSRYWLIEYLRRRPRDELYEASVVR-VKDGQVVVSIKEVGLHTSV 622
Query: 64 WVSVGAQIGDEVEVKVEEAHPRDDII 89
+V + GD V V V A+PR DI+
Sbjct: 623 STNVKLEAGDAVRVIVAAANPRKDIL 648
>gi|302774276|ref|XP_002970555.1| hypothetical protein SELMODRAFT_147137 [Selaginella moellendorffii]
gi|300162071|gb|EFJ28685.1| hypothetical protein SELMODRAFT_147137 [Selaginella moellendorffii]
Length = 669
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 4 IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATA 63
+ N++T+ AR+L N S RYW+IE+LRR+P++ Y A V+R +KD + + EVGL +
Sbjct: 565 LANLKTKEARKLGNASSRYWLIEYLRRRPRDELYEASVVR-VKDGQVVVSIKEVGLHTSV 623
Query: 64 WVSVGAQIGDEVEVKVEEAHPRDDII 89
+V + GD V V V A+PR DI+
Sbjct: 624 STNVKLEAGDAVRVIVAAANPRKDIL 649
>gi|428779631|ref|YP_007171417.1| exoribonuclease R [Dactylococcopsis salina PCC 8305]
gi|428693910|gb|AFZ50060.1| exoribonuclease R [Dactylococcopsis salina PCC 8305]
Length = 667
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 2 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIK--DRTAALLLVEVGL 59
A++V QTR RYW +E+LRR ER + A+VLR+++ D +LL ++GL
Sbjct: 578 ATLVERQTR----------RYWALEYLRRHSDER-WNAIVLRWLREDDNLGIILLEDLGL 626
Query: 60 QATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
+ ++GD VEV+V A P D+I +E V
Sbjct: 627 ELPHRFQTNVELGDRVEVEVVAADPHQDLIRFREFV 662
>gi|434393485|ref|YP_007128432.1| Exoribonuclease II [Gloeocapsa sp. PCC 7428]
gi|428265326|gb|AFZ31272.1| Exoribonuclease II [Gloeocapsa sp. PCC 7428]
Length = 685
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 5 VNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKD--RTAALLLVEVGLQAT 62
V T+ A + + RYW +E+LRR P + ++ALVL ++++ R A +L+ ++GLQ
Sbjct: 585 VTSATQEATLVERQTNRYWGLEYLRRHPNQV-WQALVLMWLREDSRLALILIEDLGLQLP 643
Query: 63 AWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
G ++G++V VKV PR D++ +EV
Sbjct: 644 MVFKRGVKLGEQVSVKVSYVDPRQDVLQFQEVT 676
>gi|443475455|ref|ZP_21065404.1| Exoribonuclease II [Pseudanabaena biceps PCC 7429]
gi|443019698|gb|ELS33751.1| Exoribonuclease II [Pseudanabaena biceps PCC 7429]
Length = 693
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 12 ARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKD--RTAALLLVEVGLQATAWVSVGA 69
A ++ S+RYW +E+LRR K+ + AL+L ++++ + A +L+ ++GL+ ++
Sbjct: 585 ANQVEKQSVRYWSLEYLRRN-KDVVWEALMLDWLRENEKLALVLIEDLGLKLPMRINRQI 643
Query: 70 QIGDEVEVKVEEAHPRDDIIYLKEV 94
Q+GD + +K E PR DIIY +E
Sbjct: 644 QVGDNLRIKTGEVDPRKDIIYFQEA 668
>gi|428223314|ref|YP_007107484.1| exoribonuclease R [Synechococcus sp. PCC 7502]
gi|427996654|gb|AFY75349.1| exoribonuclease R [Synechococcus sp. PCC 7502]
Length = 669
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIK--DRTAALLLVEVG 58
+ S+++ A ++ ++RYW +E+LRR ++ +RA++L ++K DR +LL ++G
Sbjct: 567 LLSMIDPAIYEASQMEKQTVRYWSLEYLRRH-RDHVWRAVLLDWLKEQDRIGLILLEDIG 625
Query: 59 LQATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
L+ ++ +G+ + +KV + PR DII +E
Sbjct: 626 LKIPIKLNRAVNVGENLNLKVSDVDPRRDIIQFQEAT 662
>gi|209528143|ref|ZP_03276617.1| Exoribonuclease II [Arthrospira maxima CS-328]
gi|376007620|ref|ZP_09784813.1| Exoribonuclease II [Arthrospira sp. PCC 8005]
gi|423063139|ref|ZP_17051929.1| ribonuclease II [Arthrospira platensis C1]
gi|209491431|gb|EDZ91812.1| Exoribonuclease II [Arthrospira maxima CS-328]
gi|375324020|emb|CCE20566.1| Exoribonuclease II [Arthrospira sp. PCC 8005]
gi|406715261|gb|EKD10417.1| ribonuclease II [Arthrospira platensis C1]
Length = 672
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 12 ARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGA 69
A ++ + RYW +E+LRRQ E + A++LR++++ + ++L E+GL+ +
Sbjct: 580 ASKVERETNRYWSLEYLRRQTDEV-WEAILLRWLREDSNLGLVMLEELGLELPMRFNRDI 638
Query: 70 QIGDEVEVKVEEAHPRDDIIYLKEVV 95
++GD EVKV + PR D+I +E++
Sbjct: 639 ELGDRFEVKVTHSDPRQDVIQFQEII 664
>gi|254417643|ref|ZP_05031377.1| RNB-like protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196175561|gb|EDX70591.1| RNB-like protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 671
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIK--DRTAALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR P ++ ++AL+LR+++ D +LL ++GL+ ++GD ++V+
Sbjct: 587 RYWGLEYLRRHP-DQVWQALMLRWLREHDNLGLILLEDLGLELVMRFKRSVRLGDRLDVQ 645
Query: 79 VEEAHPRDDIIYLKEVV 95
V A PR D+I +E++
Sbjct: 646 VTHADPRQDVIQFRELM 662
>gi|428775398|ref|YP_007167185.1| exoribonuclease II [Halothece sp. PCC 7418]
gi|428689677|gb|AFZ42971.1| Exoribonuclease II [Halothece sp. PCC 7418]
Length = 667
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 2 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIK--DRTAALLLVEVGL 59
A++V QT+ RYW +E+LRR ++R + A+VLR+++ D +LL ++GL
Sbjct: 578 ATLVERQTK----------RYWALEYLRRNGEQR-WSAIVLRWLREEDNLGIILLEDLGL 626
Query: 60 QATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
+ +GD VEV+V A P D+I +E V
Sbjct: 627 ELPHRFQTNVDLGDRVEVEVVAADPHQDLIRFREFV 662
>gi|409990691|ref|ZP_11274032.1| ribonuclease II, partial [Arthrospira platensis str. Paraca]
gi|409938453|gb|EKN79776.1| ribonuclease II, partial [Arthrospira platensis str. Paraca]
Length = 472
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 12 ARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGA 69
A ++ + RYW +E+LRRQ E + A++LR++++ + ++L E+GL+ +
Sbjct: 380 ASKVERETNRYWSLEYLRRQADE-VWEAILLRWLREDSNLGLVMLEELGLELPMRFNRDI 438
Query: 70 QIGDEVEVKVEEAHPRDDIIYLKEVV 95
+GD EVKV + PR D+I +E++
Sbjct: 439 ALGDRFEVKVTHSDPRQDVIQFQEII 464
>gi|291568149|dbj|BAI90421.1| ribonuclease II [Arthrospira platensis NIES-39]
Length = 673
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 12 ARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGA 69
A ++ + RYW +E+LRRQ E + A++LR++++ + ++L E+GL+ +
Sbjct: 581 ASKVERETNRYWSLEYLRRQADEV-WEAILLRWLREDSNLGLVMLEELGLELPMRFNRDI 639
Query: 70 QIGDEVEVKVEEAHPRDDIIYLKEVV 95
+GD EVKV + PR D+I +E++
Sbjct: 640 ALGDRFEVKVTHSDPRQDVIQFQEII 665
>gi|428211654|ref|YP_007084798.1| exoribonuclease R [Oscillatoria acuminata PCC 6304]
gi|428000035|gb|AFY80878.1| exoribonuclease R [Oscillatoria acuminata PCC 6304]
Length = 671
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 5 VNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIK-DRTAALLLVE-VGLQAT 62
+ M R A + + RYWI+E+LRR E ++A+VLR+++ D L+L+E +G++
Sbjct: 574 IGMAVREASLVERQTNRYWILEYLRRHTGE-VWQAVVLRWLREDENLGLILLEDIGIELA 632
Query: 63 AWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
+GD ++++V A PR+D I+ +E+V
Sbjct: 633 WRFPRAVSLGDRLDLQVAYADPREDQIHFQEMV 665
>gi|434389380|ref|YP_007099991.1| exoribonuclease R [Chamaesiphon minutus PCC 6605]
gi|428020370|gb|AFY96464.1| exoribonuclease R [Chamaesiphon minutus PCC 6605]
Length = 672
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 11/80 (13%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIK-DRTAALLLVE-----VGLQATAWVSVGAQIGDE 74
RYW +E+L R +R++ AL LR+++ D + AL+L+E + ++ WV++G QI
Sbjct: 589 RYWTLEYLNRS-GDREWDALFLRWLREDESLALILIEELGIELAMRFNRWVALGEQI--- 644
Query: 75 VEVKVEEAHPRDDIIYLKEV 94
+V+V PR DII+L+E+
Sbjct: 645 -QVQVALVDPRQDIIHLREI 663
>gi|411119545|ref|ZP_11391925.1| exoribonuclease R [Oscillatoriales cyanobacterium JSC-12]
gi|410711408|gb|EKQ68915.1| exoribonuclease R [Oscillatoriales cyanobacterium JSC-12]
Length = 664
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR P E ++AL+LR++++ +LL ++GL+ + GD ++++
Sbjct: 588 RYWGLEYLRRLPNEI-WQALMLRWLREHENLGLVLLEDLGLELAMRFNRTIAPGDRLQLR 646
Query: 79 VEEAHPRDDIIYLKEVV 95
V A PR DII+ +EV+
Sbjct: 647 VSHADPRQDIIHFEEVM 663
>gi|428307273|ref|YP_007144098.1| exoribonuclease II [Crinalium epipsammum PCC 9333]
gi|428248808|gb|AFZ14588.1| Exoribonuclease II [Crinalium epipsammum PCC 9333]
Length = 683
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIK--DRTAALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR E ++A +LR+++ D +LL ++GL+ GD +EV+
Sbjct: 598 RYWGLEYLRRNAGEV-WQAQMLRWLREDDNLGLILLEDLGLELAMRFKRSLHPGDRLEVQ 656
Query: 79 VEEAHPRDDIIYLKEVV 95
V A PR D+I+L+E V
Sbjct: 657 VSHADPRQDVIHLRESV 673
>gi|427705694|ref|YP_007048071.1| exoribonuclease II [Nostoc sp. PCC 7107]
gi|427358199|gb|AFY40921.1| Exoribonuclease II [Nostoc sp. PCC 7107]
Length = 686
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 3 SIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQ 60
S + + + R +N RYW +E+LRR P E+ + VL ++++ + A +LL ++GLQ
Sbjct: 587 STITQEVTMVERQTN---RYWALEYLRRHP-EQVWSVTVLMWLREDSNLALILLEDLGLQ 642
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
A++G+++ VKV A P+ D+I +E++
Sbjct: 643 LPMIFKRSAKLGEQLLVKVSIADPQKDMIQFQEIM 677
>gi|428310624|ref|YP_007121601.1| exoribonuclease R [Microcoleus sp. PCC 7113]
gi|428252236|gb|AFZ18195.1| exoribonuclease R [Microcoleus sp. PCC 7113]
Length = 671
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVL--RFIKDRTAALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR +R ++ALVL R + +LL ++GL+ +GD ++V+
Sbjct: 587 RYWGLEYLRRN-ADRVWQALVLNLREPDNNEGFILLEDLGLELKMRFRRAVALGDRLDVQ 645
Query: 79 VEEAHPRDDIIYLKEVV 95
V A PR D+I+ KE++
Sbjct: 646 VSHADPRQDVIHFKELI 662
>gi|443310614|ref|ZP_21040260.1| exoribonuclease R [Synechocystis sp. PCC 7509]
gi|442779319|gb|ELR89566.1| exoribonuclease R [Synechocystis sp. PCC 7509]
Length = 679
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRTA-ALLLVE-VGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR P+E ++ALVL ++++ T AL+L+E +GLQ +G++V +K
Sbjct: 600 RYWGLEYLRRHPEEV-WQALVLMWLREDTGLALILIEDLGLQLPMPFKRDVALGEQVLLK 658
Query: 79 VEEAHPRDDIIYLKEV 94
PR DI+ +EV
Sbjct: 659 AAYVDPRQDILQFQEV 674
>gi|119509770|ref|ZP_01628915.1| Ribonuclease II [Nodularia spumigena CCY9414]
gi|119465636|gb|EAW46528.1| Ribonuclease II [Nodularia spumigena CCY9414]
Length = 686
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR P ++ + VL ++++ + A +LL ++GLQ + +G++V VK
Sbjct: 602 RYWALEYLRRHP-DQVWDVTVLMWLREDSNLALILLEDLGLQLPMFFKRSVGLGEQVLVK 660
Query: 79 VEEAHPRDDIIYLKEVV 95
V A P+ D+I +E++
Sbjct: 661 VSHADPQKDMIQFQEII 677
>gi|427733634|ref|YP_007053178.1| exoribonuclease R [Rivularia sp. PCC 7116]
gi|427368675|gb|AFY52631.1| exoribonuclease R [Rivularia sp. PCC 7116]
Length = 681
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVE-VGLQATAWVSVGAQIGDEVEVKV 79
RYW +E+LRR + +++ +D AL+L+E +GLQ + +G+E+ VKV
Sbjct: 602 RYWALEYLRRHLNKAWDTTVLMWLREDSNLALILLEDLGLQLPMFFKRAVNLGEEISVKV 661
Query: 80 EEAHPRDDIIYLKEVV 95
+ P+ DII +E++
Sbjct: 662 THSDPQKDIIQFQEII 677
>gi|354564734|ref|ZP_08983910.1| Exoribonuclease II [Fischerella sp. JSC-11]
gi|353549860|gb|EHC19299.1| Exoribonuclease II [Fischerella sp. JSC-11]
Length = 681
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 3 SIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQ 60
S + + + R +N RYW +E+LRR ++ ++A VL ++++ + A +LL ++GLQ
Sbjct: 587 STITQEVTMVERQTN---RYWALEYLRRC-TDKVWQATVLMWLREDSGLALILLEDLGLQ 642
Query: 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
++G++V VKV A P+ D+I +EV+
Sbjct: 643 LPMSFRRPLKLGEQVLVKVSHADPQKDVIQFQEVI 677
>gi|186685031|ref|YP_001868227.1| ribonuclease II [Nostoc punctiforme PCC 73102]
gi|186467483|gb|ACC83284.1| ribonuclease II [Nostoc punctiforme PCC 73102]
Length = 686
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVE-VGLQATAWVSVGAQIGDEVEVKV 79
RY+ +E+LRR P+E +++ +D AL+L+E +GLQ +G+++ VKV
Sbjct: 602 RYYALEYLRRHPEETWDVTVLMWLREDSNLALILIEDLGLQLPMVFKRSVNLGEQIVVKV 661
Query: 80 EEAHPRDDIIYLKEVV 95
A P+ D+I +E++
Sbjct: 662 SHADPQKDMIQFQEII 677
>gi|427718659|ref|YP_007066653.1| exoribonuclease II [Calothrix sp. PCC 7507]
gi|427351095|gb|AFY33819.1| Exoribonuclease II [Calothrix sp. PCC 7507]
Length = 683
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIK-DRTAALLLVE-VGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRRQP E+ ++ VL +++ D AL+L+E +GLQ +G+++ VK
Sbjct: 602 RYWALEYLRRQP-EQVWQVTVLMWLREDSNLALILLEDLGLQLPMSFRRDVNLGEQLLVK 660
Query: 79 VEEAHPRDDIIYLKEVV 95
V A P+ D+I +E++
Sbjct: 661 VGLADPQKDMIQFQEII 677
>gi|428317148|ref|YP_007115030.1| Exoribonuclease II [Oscillatoria nigro-viridis PCC 7112]
gi|428240828|gb|AFZ06614.1| Exoribonuclease II [Oscillatoria nigro-viridis PCC 7112]
Length = 668
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVSVG--AQIGDEVEVK 78
RYW +E+LRR P E + AL+LR++++ + L++ L + G +IGD +EVK
Sbjct: 588 RYWGLEYLRRNPDE-VWEALMLRWLREDSNLGLILLEELGLELAMRFGRSVEIGDRLEVK 646
Query: 79 VEEAHPRDDIIYLKEVV 95
V PR D+I +E++
Sbjct: 647 VTHCDPRSDVINFQEMI 663
>gi|427729568|ref|YP_007075805.1| exoribonuclease R [Nostoc sp. PCC 7524]
gi|427365487|gb|AFY48208.1| exoribonuclease R [Nostoc sp. PCC 7524]
Length = 710
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIK-DRTAALLLVE-VGLQATAWVSVGAQIGDEVEVK 78
+YW +E+LRR P E+ ++ VL +++ D AL+L+E +GLQ +G++V VK
Sbjct: 626 KYWALEYLRRHP-EQIWQVTVLMWLREDSNLALILLEDLGLQLPMIFRRAVSLGEQVLVK 684
Query: 79 VEEAHPRDDIIYLKEVV 95
V + PR D+I +E++
Sbjct: 685 VSFSDPRKDMIQFQEII 701
>gi|428296785|ref|YP_007135091.1| exoribonuclease II [Calothrix sp. PCC 6303]
gi|428233329|gb|AFY99118.1| Exoribonuclease II [Calothrix sp. PCC 6303]
Length = 685
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR P ++ ++ VL ++++ + A +LL ++G+Q + A +G+++ VK
Sbjct: 603 RYWSLEYLRRHP-DKIWQVTVLMWLREDSGLALILLEDLGVQLPMFFKREATLGEQLLVK 661
Query: 79 VEEAHPRDDIIYLKEVV 95
V A P+ DII +E++
Sbjct: 662 VGLADPQKDIIQFQEII 678
>gi|75907545|ref|YP_321841.1| ribonuclease II [Anabaena variabilis ATCC 29413]
gi|75701270|gb|ABA20946.1| Ribonuclease II [Anabaena variabilis ATCC 29413]
Length = 686
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR P+E ++ VL ++++ + A +LL ++GLQ ++G++V VK
Sbjct: 602 RYWALEYLRRHPEEI-WQVTVLMWLREDSNLALILLEDLGLQLPMVFKRSVRLGEQVLVK 660
Query: 79 VEEAHPRDDIIYLKEVV 95
V + P+ D+I +E++
Sbjct: 661 VSISDPQKDVIQFQEII 677
>gi|17231942|ref|NP_488490.1| ribonuclease II [Nostoc sp. PCC 7120]
gi|17133586|dbj|BAB76149.1| ribonuclease II [Nostoc sp. PCC 7120]
Length = 686
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR P+E ++ VL ++++ + A +LL ++GLQ ++G++V VK
Sbjct: 602 RYWALEYLRRHPEEI-WQVTVLMWLREDSNLALILLEDLGLQLPMVFKRSVRLGEQVLVK 660
Query: 79 VEEAHPRDDIIYLKEVV 95
V + P+ D+I +E++
Sbjct: 661 VSISDPQKDVIQFQEII 677
>gi|428207110|ref|YP_007091463.1| exoribonuclease II [Chroococcidiopsis thermalis PCC 7203]
gi|428009031|gb|AFY87594.1| Exoribonuclease II [Chroococcidiopsis thermalis PCC 7203]
Length = 687
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKD--RTAALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR ++ ++A+VL ++++ R A +L+ ++GLQ G +G+++ +K
Sbjct: 604 RYWGLEYLRRHAQDV-WQAIVLMWLREDSRLALILIEDLGLQLPMTFKRGVSLGEQILIK 662
Query: 79 VEEAHPRDDIIYLKEV 94
V PR D I +EV
Sbjct: 663 VAYVDPRQDTIQFQEV 678
>gi|334116976|ref|ZP_08491068.1| Exoribonuclease II [Microcoleus vaginatus FGP-2]
gi|333461796|gb|EGK90401.1| Exoribonuclease II [Microcoleus vaginatus FGP-2]
Length = 668
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVSVG--AQIGDEVEVK 78
RYW +E+LRR P E + AL+LR++++ + L++ L + G IGD +EVK
Sbjct: 588 RYWGLEYLRRNPDE-VWEALMLRWLREDSNLGLILLEELGLELAMRFGRSVAIGDRLEVK 646
Query: 79 VEEAHPRDDIIYLKEVV 95
V PR D+I +E++
Sbjct: 647 VTHCDPRSDVINFQEMI 663
>gi|86609985|ref|YP_478747.1| VacB/RNB family exoribonuclease [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558527|gb|ABD03484.1| exoribonuclease, VacB/RNB family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 686
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 9 TRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALL--LVEVGLQATAWVS 66
T A ++ S RYW IE+LR +P + +RALVL +++++ +L L E+ + +
Sbjct: 592 TAEANQVERKSKRYWSIEYLRLRPGQ-TWRALVLGYLREQENLVLAMLDEIAFRVPVRLE 650
Query: 67 VGAQIGDEVEVKVEEAHPRDDIIYLKEVVR 96
+G +E++V +A PR D+I L+EV R
Sbjct: 651 RQIPLGAWIELEVVQADPRADVIELREVGR 680
>gi|434399751|ref|YP_007133755.1| Exoribonuclease II [Stanieria cyanosphaera PCC 7437]
gi|428270848|gb|AFZ36789.1| Exoribonuclease II [Stanieria cyanosphaera PCC 7437]
Length = 671
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIK--DRTAALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR R + LVLR+++ DR +LL ++GL+ +GD +EV+
Sbjct: 588 RYWGLEYLRRN-SNRVWGVLVLRWLREEDRLGIILLEDLGLELPHRFERAVTLGDRLEVQ 646
Query: 79 VEEAHPRDDIIYLKEVV 95
V A P D I +E+
Sbjct: 647 VTRADPHRDEIRFREIT 663
>gi|56750434|ref|YP_171135.1| ribonuclease II [Synechococcus elongatus PCC 6301]
gi|81299933|ref|YP_400141.1| exoribonuclease II [Synechococcus elongatus PCC 7942]
gi|56685393|dbj|BAD78615.1| ribonuclease II [Synechococcus elongatus PCC 6301]
gi|81168814|gb|ABB57154.1| Exoribonuclease II [Synechococcus elongatus PCC 7942]
Length = 670
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRTA-ALLLVE-VGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRRQ +R + +L+LR++++ AL+L+E +GL+ +S ++GD + ++
Sbjct: 589 RYWGLEYLRRQ-GDRIWSSLILRWLREHEQLALILIEDLGLELPIRLSQPVELGDRLALR 647
Query: 79 VEEAHPRDDIIYLKEV 94
V A PR D I + V
Sbjct: 648 VTHADPRQDRIQFEVV 663
>gi|440684659|ref|YP_007159454.1| Exoribonuclease II [Anabaena cylindrica PCC 7122]
gi|428681778|gb|AFZ60544.1| Exoribonuclease II [Anabaena cylindrica PCC 7122]
Length = 685
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RY+ +E+LRR P E+ ++ VL ++++ + A +LL ++GLQ +G+++ VK
Sbjct: 602 RYYALEYLRRHP-EQVWQITVLMWLREDSNLALILLEDLGLQLPMAFRRSVNLGEQLSVK 660
Query: 79 VEEAHPRDDIIYLKEVV 95
V A P+ D+I +E++
Sbjct: 661 VSLADPQKDMIQFQEII 677
>gi|414079583|ref|YP_007001007.1| ribonuclease II [Anabaena sp. 90]
gi|413972862|gb|AFW96950.1| ribonuclease II [Anabaena sp. 90]
Length = 686
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 1 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIK-DRTAALLLVE-VG 58
++SI T + R+ + RY+ +E+LRR P E+ ++ VL +++ D L+L+E +G
Sbjct: 586 VSSITQEATMVERQTN----RYYALEYLRRHP-EQVWQVTVLMWLREDSNLGLILLEDLG 640
Query: 59 LQATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
LQ +G+ + VKV A P+ D+I+ +E++
Sbjct: 641 LQLPMSFRRSVSLGENLLVKVSLADPQKDMIHFQEIM 677
>gi|443317238|ref|ZP_21046654.1| exoribonuclease R [Leptolyngbya sp. PCC 6406]
gi|442783123|gb|ELR93047.1| exoribonuclease R [Leptolyngbya sp. PCC 6406]
Length = 676
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVSV--GAQIGDEVEVK 78
RYW +E+LRR P ++ ++A++LR++++ L++ L V + +G+E +V+
Sbjct: 592 RYWALEYLRRHP-DQVWQAMLLRWLRESELLGLILLEELGLELGVRLERDMTLGEEFQVR 650
Query: 79 VEEAHPRDDIIYLKEVV 95
V A+PR D+I + EVV
Sbjct: 651 VTHANPRQDVIRMAEVV 667
>gi|113477198|ref|YP_723259.1| exoribonuclease II [Trichodesmium erythraeum IMS101]
gi|110168246|gb|ABG52786.1| Exoribonuclease II [Trichodesmium erythraeum IMS101]
Length = 674
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 14 RLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVSVG--AQI 71
R +N RYW +E+LRR E ++ALV+R++K+ L++ L + G ++
Sbjct: 586 RFTN---RYWGLEYLRRNSGEV-WQALVIRWLKEEINLGLVLLEELGLELAMRFGRSVEV 641
Query: 72 GDEVEVKVEEAHPRDDIIYLKEVVR 96
GD +EVKV A PR D I +E+V
Sbjct: 642 GDRLEVKVAHADPRRDEIVFQEIVN 666
>gi|443323592|ref|ZP_21052597.1| exoribonuclease R [Gloeocapsa sp. PCC 73106]
gi|442786772|gb|ELR96500.1| exoribonuclease R [Gloeocapsa sp. PCC 73106]
Length = 667
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIK-DRTAALLLVE-VGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRRQP E ++ LVLR+++ D AL+++E +G++ +GD ++++
Sbjct: 588 RYWSLEYLRRQP-EGVWQVLVLRWLREDENLALVMLEDLGIELAHRFERNVSLGDRLDLQ 646
Query: 79 VEEAHPRDDIIYLKEVVR 96
V P D I +E+ +
Sbjct: 647 VVRVDPHRDEIRFREMTQ 664
>gi|282895501|ref|ZP_06303638.1| Ribonuclease II [Raphidiopsis brookii D9]
gi|281199534|gb|EFA74397.1| Ribonuclease II [Raphidiopsis brookii D9]
Length = 683
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RY+ +E+LRR E+ + +VL ++++ + A +LL ++GLQ ++G+ V VK
Sbjct: 602 RYYALEYLRRH-LEQVWEVIVLMWLREDSNLALILLEDLGLQLPMMFKRSVKLGERVLVK 660
Query: 79 VEEAHPRDDIIYLKEVV 95
V A P+ DII +E+V
Sbjct: 661 VALADPQKDIIQFQEIV 677
>gi|282901218|ref|ZP_06309147.1| Ribonuclease II [Cylindrospermopsis raciborskii CS-505]
gi|281193918|gb|EFA68886.1| Ribonuclease II [Cylindrospermopsis raciborskii CS-505]
Length = 684
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RY+ +E+LRR E+ + +VL ++++ + A +LL ++GLQ ++G+ V VK
Sbjct: 603 RYYALEYLRRH-LEQVWEVIVLMWLREDSNLALILLEDLGLQLPMMFKRSVKLGERVLVK 661
Query: 79 VEEAHPRDDIIYLKEVV 95
V A P+ DII +E+V
Sbjct: 662 VALADPQKDIIQFQEIV 678
>gi|86605897|ref|YP_474660.1| VacB/RNB family exoribonuclease [Synechococcus sp. JA-3-3Ab]
gi|86554439|gb|ABC99397.1| exoribonuclease, VacB/RNB family [Synechococcus sp. JA-3-3Ab]
Length = 683
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 9 TRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAAL--LLVEVGLQATAWVS 66
T A ++ S RYW IE+LR++P + ++ALVL ++++ + +L E+ + +
Sbjct: 592 TAEANQVERKSKRYWSIEYLRQRPGQI-WQALVLGYLREEENLVMAMLDEIAFRVPVRLE 650
Query: 67 VGAQIGDEVEVKVEEAHPRDDIIYLKEV 94
+G +E++V +A PR D+I L+EV
Sbjct: 651 RQVPLGAWIELEVLQADPRADVIELREV 678
>gi|220906337|ref|YP_002481648.1| exoribonuclease II [Cyanothece sp. PCC 7425]
gi|219862948|gb|ACL43287.1| Exoribonuclease II [Cyanothece sp. PCC 7425]
Length = 671
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LR QP++ ++A++LR++++ A +L E+G++ + ++G+++ ++
Sbjct: 589 RYWCLEYLRTQPQQI-WQAVMLRWLREHENLALVLFEELGVELAMRFNRAVKVGEQLMLR 647
Query: 79 VEEAHPRDDIIYLKEVV 95
V A P+ D I ++EV
Sbjct: 648 VRYADPQADQIQIEEVA 664
>gi|359463693|ref|ZP_09252256.1| ribonuclease II [Acaryochloris sp. CCMEE 5410]
Length = 680
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LR Q + + A+VLR++++ A +LL ++GL+ + +GD ++VK
Sbjct: 595 RYWSLEYLR-QHGQTVWPAMVLRWLREHENLALILLEDLGLELVMRLDHPVVLGDRLDVK 653
Query: 79 VEEAHPRDDIIYLKEV 94
V +PR D I L+E
Sbjct: 654 VASVNPRLDRIQLQEC 669
>gi|158337924|ref|YP_001519100.1| exoribonuclease II [Acaryochloris marina MBIC11017]
gi|158308165|gb|ABW29782.1| exoribonuclease II [Acaryochloris marina MBIC11017]
Length = 680
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LR Q + + A+VLR++++ A +LL ++GL+ + +GD ++VK
Sbjct: 595 RYWSLEYLR-QHGQTVWPAMVLRWLREHENLALILLEDLGLELVMRLDHPVVLGDRLDVK 653
Query: 79 VEEAHPRDDIIYLKEV 94
V +PR D I L+E
Sbjct: 654 VASVNPRLDRIQLQEC 669
>gi|298493171|ref|YP_003723348.1| exoribonuclease II ['Nostoc azollae' 0708]
gi|298235089|gb|ADI66225.1| Exoribonuclease II ['Nostoc azollae' 0708]
Length = 683
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RY+ +E+LRR P E+ ++ VL ++++ + A +LL ++GLQ +G+++ VK
Sbjct: 602 RYYALEYLRRHP-EQIWQITVLMWLREDSNLALILLEDLGLQLPMAFRRTVNLGEQLLVK 660
Query: 79 VEEAHPRDDIIYLKEVV 95
V A P+ D+I +E++
Sbjct: 661 VSLADPQKDMIQFQEII 677
>gi|434407914|ref|YP_007150799.1| exoribonuclease R [Cylindrospermum stagnale PCC 7417]
gi|428262169|gb|AFZ28119.1| exoribonuclease R [Cylindrospermum stagnale PCC 7417]
Length = 686
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRT--AALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RY+ +E+LRR P E+ ++ VL ++++ + A +LL ++GLQ +G+++ VK
Sbjct: 602 RYYALEYLRRHP-EQVWQITVLMWLREDSNLALILLEDIGLQLPMTFKRSVNLGEQLLVK 660
Query: 79 VEEAHPRDDIIYLKEVV 95
V + P+ D+I +E++
Sbjct: 661 VGLSDPQKDMIQFQEIM 677
>gi|22298194|ref|NP_681441.1| ribonuclease II [Thermosynechococcus elongatus BP-1]
gi|22294373|dbj|BAC08203.1| ribonuclease II [Thermosynechococcus elongatus BP-1]
Length = 674
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIK--DRTAALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR +E +R ++LR+++ + +LL ++ ++ A++G+ V V+
Sbjct: 588 RYWCLEYLRRH-REEVWRGILLRWLRPEEGLGLVLLEDLAVELAMRFQRQAKLGECVLVR 646
Query: 79 VEEAHPRDDIIYLKEV 94
V PR D I+L+EV
Sbjct: 647 VSRVDPRSDQIWLEEV 662
>gi|452820992|gb|EME28028.1| exoribonuclease II [Galdieria sulphuraria]
Length = 769
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 12 ARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVSVGAQI 71
A+ + S++YW +E+LR + Y A V+ +IK LLV++ ++ +
Sbjct: 679 AKVVKKRSVKYWCLEYLRMNGLRKNYPATVVSWIKSEEPKRLLVQIDKIPYYFMMDSDHV 738
Query: 72 ---GDEVEVKVEEAHPRDDIIYLKEV 94
G +V VKV + HPR II L V
Sbjct: 739 YYPGQQVVVKVTDIHPRMGIIRLNIV 764
>gi|300869627|ref|ZP_07114207.1| exoribonuclease II [Oscillatoria sp. PCC 6506]
gi|300332405|emb|CBN59407.1| exoribonuclease II [Oscillatoria sp. PCC 6506]
Length = 670
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWV--SVGAQIGDEVEVK 78
RYW +E+LRR E ++A++LR++++ T L++ L + S +IGD +EVK
Sbjct: 588 RYWGLEYLRRHAGE-VWQAMMLRWLREDTNVGLVLLEELGLELAMRFSRPVEIGDRLEVK 646
Query: 79 VEEAHPRDDIIYLKEVV 95
V PR D I +E++
Sbjct: 647 VTHCDPRSDAIQFQEMI 663
>gi|427418757|ref|ZP_18908940.1| exoribonuclease R [Leptolyngbya sp. PCC 7375]
gi|425761470|gb|EKV02323.1| exoribonuclease R [Leptolyngbya sp. PCC 7375]
Length = 686
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLV--EVGLQATAWVSVGAQIGDEVEVK 78
RYW +EFLRR+ K + ++LR++++ + L++ ++GL+ +G+ +V+
Sbjct: 601 RYWALEFLRREGK-HAWSVMLLRWLREHESLGLVIIEDLGLELAMRFESMPALGERFDVR 659
Query: 79 VEEAHPRDDIIYLK 92
V A+PR D I L+
Sbjct: 660 VVHANPRQDFIRLE 673
>gi|443328119|ref|ZP_21056722.1| exoribonuclease R [Xenococcus sp. PCC 7305]
gi|442792316|gb|ELS01800.1| exoribonuclease R [Xenococcus sp. PCC 7305]
Length = 669
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDRTA--ALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR ++ ++ LVLR++++ A+L+ ++GL+ T +GD + K
Sbjct: 588 RYWGLEYLRRN-SDQIWQVLVLRWLREDEGLGAILIEDLGLELTHRFDNHVNLGDRLGFK 646
Query: 79 VEEAHPRDDIIYLKEVV 95
V + P D I +E V
Sbjct: 647 VLVSDPHRDEIRFQEAV 663
>gi|119488090|ref|ZP_01621534.1| Ribonuclease II [Lyngbya sp. PCC 8106]
gi|119455379|gb|EAW36518.1| Ribonuclease II [Lyngbya sp. PCC 8106]
Length = 672
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 12 ARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVSVG--A 69
A ++ + RYW +EFLRR ++ + A++LR++++ + LL+ L + + A
Sbjct: 579 ASKVERETNRYWSLEFLRRH-LDQTWEAILLRWLREDSNLGLLLLEELAVELPMRLNRNA 637
Query: 70 QIGDEVEVKVEEAHPRDDIIYLKEVV 95
++G+ VKV PR DII +E+
Sbjct: 638 ELGERFTVKVAHVDPRQDIIQFQEIT 663
>gi|428227000|ref|YP_007111097.1| exoribonuclease II [Geitlerinema sp. PCC 7407]
gi|427986901|gb|AFY68045.1| Exoribonuclease II [Geitlerinema sp. PCC 7407]
Length = 675
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKDR-TAALLLVEVGLQATAW-VSVGAQIGDEVEVK 78
RYW +EFLRR E ++A++LR++++ L+L+E AW S ++G+ ++V+
Sbjct: 588 RYWGLEFLRRHTGE-VWQAMMLRWLREHENLGLILLEELGLELAWRPSRSMELGERIQVR 646
Query: 79 VEEAHPRDDIIYLKEVV 95
V PR DI+ +E+
Sbjct: 647 VTYVDPRQDIVQFEEMA 663
>gi|255080276|ref|XP_002503718.1| ribonuclease [Micromonas sp. RCC299]
gi|226518985|gb|ACO64976.1| ribonuclease [Micromonas sp. RCC299]
Length = 851
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 8 QTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFI-KDRTAALLLV-EVGLQATAWV 65
+TR R S ++W IE+ RR ++ + V++++ KD AAL+ E G++ V
Sbjct: 762 RTRTLRAACRESDQFWTIEWYRRGGVDKDHVGTVVKWVKKDANAALVCFDETGVEWKCVV 821
Query: 66 SVGAQIGDEVEVKVEEAHP 84
++GD V ++V EA P
Sbjct: 822 RKRTRLGDAVTMRVREADP 840
>gi|301063080|ref|ZP_07203641.1| RNB-like protein [delta proteobacterium NaphS2]
gi|300442800|gb|EFK07004.1| RNB-like protein [delta proteobacterium NaphS2]
Length = 660
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 14 RLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDR-----TAALLLVEVGLQATAWVSVG 68
R+ LRYWI+++L + R +ALVL +K++ T L++ ++ Q S G
Sbjct: 579 RIQRNRLRYWILKYLGIN-RGRTLKALVLDELKNKYRIVLTDFLMVTDLKRQDGIIFSRG 637
Query: 69 AQIGDEVEVKVEEAHPRDDIIYLKEV 94
E+EVKV+ A P DD I L+ V
Sbjct: 638 Q----EIEVKVKAADPWDDTITLEYV 659
>gi|337288188|ref|YP_004627660.1| ribonuclease II [Thermodesulfobacterium sp. OPB45]
gi|334901926|gb|AEH22732.1| ribonuclease II [Thermodesulfobacterium geofontis OPF15]
Length = 661
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 12 ARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVSVG-AQ 70
A ++ N ++Y+++++L+ +++ R LVL ++++ A + LV+ + G
Sbjct: 579 ATQIQNKRIKYFLLKYLKIYMQDKPLRGLVLE-VQNKKAKVYLVDYNVIGEVMGFKGILN 637
Query: 71 IGDEVEVKVEEAHPRDDIIYLK 92
GDE+ VK+E+ +P +I+ LK
Sbjct: 638 PGDEIMVKIEKVNPHLEILRLK 659
>gi|254423969|ref|ZP_05037687.1| RNB-like protein [Synechococcus sp. PCC 7335]
gi|196191458|gb|EDX86422.1| RNB-like protein [Synechococcus sp. PCC 7335]
Length = 681
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 21 RYWIIEFLRRQPKE---RQYRALVLRFIKDRTAALLLV--EVGLQATAWVSVGAQIGDEV 75
+YW IE+L+RQ + + + +++R++++ + L++ ++GL+ ++G+ +
Sbjct: 587 KYWAIEYLKRQNEANPGQPWDVIMVRWLREHESLGLIIFEDLGLEFVMRFDRAVEVGERL 646
Query: 76 EVKVEEAHPRDDIIYLKEVV 95
++V A PR ++I KEV
Sbjct: 647 TIQVSYADPRQEMIRFKEVA 666
>gi|37521185|ref|NP_924562.1| ribonuclease II [Gloeobacter violaceus PCC 7421]
gi|35212181|dbj|BAC89557.1| ribonuclease II [Gloeobacter violaceus PCC 7421]
Length = 663
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 19 SLRYWIIEFLRRQPKERQYRALVLRFIK-DRTAALLLVE-VGLQATAWVSVGAQIGDEVE 76
S RYWI E+LR + + Q LVL ++ D AL+L+E V L+ + G+ V+
Sbjct: 583 SERYWIYEYLRHRRHQVQ-PGLVLDYLGGDPQRALVLLESVALRLPVRLDRPVSKGEMVD 641
Query: 77 VKVEEAHPRDDIIYLKEV 94
+++ + PR D++ LKEV
Sbjct: 642 LQIVQVDPRQDLLVLKEV 659
>gi|337286673|ref|YP_004626146.1| ribonuclease II [Thermodesulfatator indicus DSM 15286]
gi|335359501|gb|AEH45182.1| ribonuclease II [Thermodesulfatator indicus DSM 15286]
Length = 661
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 15 LSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWV--SVGAQIG 72
+ N + RYW++++L++ + R ALV+ I R A +LL++ L + S+ Q G
Sbjct: 580 IKNKTYRYWLLKYLKQNARNRPLDALVID-IHQRKAKVLLLDFMLTVDVPLPPSLRLQPG 638
Query: 73 DEVEVKVEEAHPRDDII 89
++V+V ++ PR++ I
Sbjct: 639 EKVKVILKGIQPREETI 655
>gi|428170949|gb|EKX39870.1| hypothetical protein GUITHDRAFT_114119 [Guillardia theta CCMP2712]
Length = 791
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 14 RLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKD----RTAALLLVEVGLQATAWVSVGA 69
RL +S R+WI+E+LRR+ + VLR ++LL E+G T V+ A
Sbjct: 703 RLQRSSERFWILEYLRRKGPDIILSGTVLRSYNPAGLVSQVSILLDELGHIETLRVADKA 762
Query: 70 -QIGDEVEVKVEEAHPRDDIIYLKEVVR 96
++G +V V+V+E +P I L E+VR
Sbjct: 763 PKVGAKVNVQVKECNPVIGTIKL-ELVR 789
>gi|332712186|ref|ZP_08432114.1| exoribonuclease R [Moorea producens 3L]
gi|332348992|gb|EGJ28604.1| exoribonuclease R [Moorea producens 3L]
Length = 685
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 9 TRIARRLSN---TSLRYWIIEFLRRQPKERQYRALVLRFIKDR--TAALLLVEVGLQATA 63
TR A+ S + +YW +E+LRR P + ++ LVL + ++ +LL E+GL+
Sbjct: 571 TRTAKDASEVERDTNKYWGLEYLRRNPNQV-WQVLVLSWWRENENKGNILLEELGLELPM 629
Query: 64 WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
Q+GD + VKV A PR ++I+ +E+
Sbjct: 630 RFQRSVQLGDRLHVKVSHADPRKEVIHFQELA 661
>gi|303280013|ref|XP_003059299.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459135|gb|EEH56431.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 636
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 9 TRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIK--DRTAALLLVEVGLQATAWVS 66
TR R S +WI + +P +RA V ++I+ D A ++ E G ++ A V
Sbjct: 547 TRALRSAMRASDAFWITYWYASRPAGTTHRATVAKWIRRQDGLAVVVFDETGHESAAKVD 606
Query: 67 VGAQIGDEVEVKVEEAHP 84
A++G V++ V EA+P
Sbjct: 607 ERAELGSAVDLVVMEANP 624
>gi|284929340|ref|YP_003421862.1| exoribonuclease R [cyanobacterium UCYN-A]
gi|284809784|gb|ADB95481.1| exoribonuclease R [cyanobacterium UCYN-A]
Length = 671
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKD--RTAALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +EFLRR ++ ++ LVLR++++ +LL E+GL+ + Q+GD + V+
Sbjct: 587 RYWGLEFLRRN-TDQVWQGLVLRWLREDEGLGIILLEELGLELPHYFERSVQLGDHINVQ 645
Query: 79 VEEAHPRDDIIYLKEVVR 96
V + P D I +EV +
Sbjct: 646 VSRSDPYRDEIRFREVFK 663
>gi|170077199|ref|YP_001733837.1| ribonuclease II [Synechococcus sp. PCC 7002]
gi|169884868|gb|ACA98581.1| ribonuclease II [Synechococcus sp. PCC 7002]
Length = 670
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 21 RYWIIEFLRRQPKERQYRALVLRFIKD--RTAALLLVEVGLQATAWVSVGAQIGDEVEVK 78
RYW +E+LRR ++ ++ LVLR++++ + +LL E+GL+ +GD +EVK
Sbjct: 587 RYWSLEYLRRN-ADQVWQGLVLRWLREDEKLGIILLEELGLELPHRFERAVALGDRLEVK 645
Query: 79 VEEAHPRDDIIYLKEVV 95
V +A P D I +E++
Sbjct: 646 VSQADPHKDEIRFRELL 662
>gi|116748174|ref|YP_844861.1| exoribonuclease II [Syntrophobacter fumaroxidans MPOB]
gi|116697238|gb|ABK16426.1| Exoribonuclease II [Syntrophobacter fumaroxidans MPOB]
Length = 680
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 4 IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATA 63
+ +Q+RIA + RYWI+++L Q AL+L +R + LLL + ++ A
Sbjct: 587 LTALQSRIAF-IQRKWTRYWILKYLE-QEDIHSLNALILE-QNERYSHLLLPDFLIETNA 643
Query: 64 WV--SVGAQIGDEVEVKVEEAHPRDDII 89
+ +V Q G+ V VK++ +PR+DI+
Sbjct: 644 HLPENVKFQPGEMVRVKIDRLNPREDIL 671
>gi|427711712|ref|YP_007060336.1| exoribonuclease R [Synechococcus sp. PCC 6312]
gi|427375841|gb|AFY59793.1| exoribonuclease R [Synechococcus sp. PCC 6312]
Length = 670
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 19 SLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEV--GLQATAWVSVGAQIGDEVE 76
+ RYW +EFLRR ++ ++AL+LR++++ L++ G++ +G+ +
Sbjct: 589 TTRYWCLEFLRRH-SDQVWQALMLRWLREDDLLALVLLEDLGVELAVRFHRVVGLGETLN 647
Query: 77 VKVEEAHPRDDIIYLKEVV 95
++V PR D I L+EV+
Sbjct: 648 LRVSRVDPRADQIALEEVI 666
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.137 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,267,275,467
Number of Sequences: 23463169
Number of extensions: 38213729
Number of successful extensions: 144320
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 144186
Number of HSP's gapped (non-prelim): 111
length of query: 96
length of database: 8,064,228,071
effective HSP length: 65
effective length of query: 31
effective length of database: 6,539,122,086
effective search space: 202712784666
effective search space used: 202712784666
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)