BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034382
         (96 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6NQJ6|RNR1_ARATH Ribonuclease II, chloroplastic/mitochondrial OS=Arabidopsis
           thaliana GN=RNR1 PE=1 SV=1
          Length = 803

 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 83/95 (87%)

Query: 1   MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQ 60
           +A+ VNMQ+++ R+LSNT LRYW+IEFLRRQ K ++Y ALVLRF+KDR A+LLLVEVG Q
Sbjct: 709 IAASVNMQSKVVRKLSNTGLRYWVIEFLRRQEKGKKYTALVLRFVKDRIASLLLVEVGFQ 768

Query: 61  ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95
           ATAWVS G Q+GDE+EV+VEEAHPRDD+I  KEV+
Sbjct: 769 ATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 803


>sp|Q2QLG9|CTTB2_OTOGA Cortactin-binding protein 2 OS=Otolemur garnettii GN=CTTNBP2 PE=3
           SV=1
          Length = 1655

 Score = 33.5 bits (75), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 1   MASIVNMQTRIARRLSNTSLRYWIIEF--LRRQPKERQYRALVLRFI----KDRTAALLL 54
           MA    MQ R+A +L+    R   +E   L+ Q  E++++ L  R      K++   LLL
Sbjct: 115 MAHCRKMQERMATQLAAAESRQKKLEMEKLQLQALEQEHKKLAARLEEERGKNKQVVLLL 174

Query: 55  VEVGLQATAWVSVGAQIGDEVEVKVEEAHPR 85
           V+   Q +  V   AQ  +EV  K+EE   R
Sbjct: 175 VKECKQLSGRVIEEAQRLEEVMAKLEEEKKR 205


>sp|Q07E28|CTTB2_NEONE Cortactin-binding protein 2 OS=Neofelis nebulosa GN=CTTNBP2 PE=3
           SV=1
          Length = 1658

 Score = 31.2 bits (69), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 1   MASIVNMQTRIARRLSNTSLRYWIIEF--LRRQPKERQYRALVLRFIKDRT----AALLL 54
           MA    MQ R++ +L+    R   +E   L+ Q  E++++ L  R  ++R       L+L
Sbjct: 115 MAHCRKMQERMSTQLAAAESRQKKLEMEKLQLQAVEQEHQKLAARLEEERGKNKHVVLML 174

Query: 55  VEVGLQATAWVSVGAQIGDEVEVKVEE 81
           V+   Q +  V   AQ  +EV VK+EE
Sbjct: 175 VKECKQLSGKVIEEAQKLEEVMVKLEE 201


>sp|Q11BH8|TYPH_MESSB Putative thymidine phosphorylase OS=Mesorhizobium sp. (strain BNC1)
           GN=Meso_3880 PE=3 SV=1
          Length = 509

 Score = 28.9 bits (63), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 35  RQYRALVLRFIKDRTAALLLVEVGLQATAWVSVGAQIGDEVEVKVEEAHP 84
           RQ  A +  F  D  A L   EVGL  TAW  +G   GDEV V    +HP
Sbjct: 57  RQVHATL--FQVDGDAVLSHDEVGLSETAWDLLGVAEGDEVRV----SHP 100


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.137    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,056,383
Number of Sequences: 539616
Number of extensions: 918176
Number of successful extensions: 4161
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4159
Number of HSP's gapped (non-prelim): 5
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)