Query 034382
Match_columns 96
No_of_seqs 100 out of 126
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 22:13:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r7d_A Ribonuclease II family 99.4 5.7E-13 1.9E-17 106.0 10.2 90 2-95 373-462 (469)
2 2id0_A Exoribonuclease 2; RNAs 98.9 6.8E-09 2.3E-13 85.2 8.3 89 3-93 529-642 (644)
3 2vnu_D Exosome complex exonucl 98.5 1.8E-07 6.2E-12 78.0 7.1 87 3-92 641-758 (760)
4 2wp8_J Exosome complex exonucl 98.4 5.2E-07 1.8E-11 77.2 7.6 87 2-91 857-974 (977)
5 2k52_A Uncharacterized protein 97.2 0.0082 2.8E-07 36.3 9.7 57 34-92 6-69 (80)
6 1luz_A Protein K3, protein K2; 96.6 0.0075 2.6E-07 37.5 6.6 63 26-92 5-80 (88)
7 2khj_A 30S ribosomal protein S 96.4 0.021 7E-07 36.4 7.8 75 15-92 14-99 (109)
8 2k4k_A GSP13, general stress p 96.3 0.068 2.3E-06 35.2 9.9 57 34-92 8-75 (130)
9 2khi_A 30S ribosomal protein S 96.2 0.051 1.7E-06 35.0 8.7 57 34-92 31-99 (115)
10 2eqs_A ATP-dependent RNA helic 96.0 0.088 3E-06 33.2 8.9 56 34-92 13-82 (103)
11 2a19_A EIF-2- alpha, eukaryoti 95.6 0.089 3E-06 36.6 8.5 65 26-92 6-85 (175)
12 3aev_A Translation initiation 95.6 0.11 3.8E-06 38.6 9.5 65 27-92 4-81 (275)
13 2cqo_A Nucleolar protein of 40 95.4 0.043 1.5E-06 35.8 5.9 60 31-92 21-93 (119)
14 1wi5_A RRP5 protein homolog; S 95.3 0.13 4.6E-06 33.0 8.0 58 34-92 22-91 (119)
15 1kl9_A Eukaryotic translation 95.0 0.18 6.3E-06 35.2 8.7 60 31-92 14-85 (182)
16 1q8k_A Eukaryotic translation 94.5 0.17 5.8E-06 38.2 7.8 65 26-92 4-83 (308)
17 3go5_A Multidomain protein wit 91.8 1.7 5.7E-05 32.2 9.5 63 29-92 148-213 (285)
18 3cw2_C Translation initiation 91.6 0.44 1.5E-05 35.0 6.1 58 34-92 12-81 (266)
19 1go3_E DNA-directed RNA polyme 89.2 2.6 9E-05 28.7 8.0 57 27-87 76-154 (187)
20 3psi_A Transcription elongatio 86.3 2.7 9.2E-05 37.1 8.0 57 34-92 903-971 (1219)
21 2wac_A CG7008-PA; unknown func 85.9 4.2 0.00014 27.7 7.5 54 33-87 65-126 (218)
22 2vb2_X Copper protein, cation 85.2 4.8 0.00016 24.8 9.1 56 36-94 17-84 (88)
23 1hh2_P NUSA, N utilization sub 85.2 6.2 0.00021 30.1 8.8 60 29-92 131-197 (344)
24 2eqk_A Tudor domain-containing 84.4 1.6 5.4E-05 27.3 4.3 33 34-66 36-68 (85)
25 2qcp_X Cation efflux system pr 84.2 5.1 0.00017 24.2 9.1 56 36-94 9-76 (80)
26 3i4o_A Translation initiation 83.9 4.2 0.00014 24.8 6.0 56 35-90 14-75 (79)
27 2hqx_A P100 CO-activator tudor 83.5 1.8 6.1E-05 30.5 4.8 61 27-87 72-142 (246)
28 1y14_B B16, RPB7, DNA-directed 82.8 6.1 0.00021 26.6 7.1 62 24-89 75-157 (171)
29 2b8k_G B16, DNA-directed RNA p 82.2 3.8 0.00013 29.1 6.1 61 25-89 76-157 (215)
30 4b9x_A TDRD1, tudor domain-con 79.4 6.6 0.00023 27.5 6.5 56 33-88 79-142 (226)
31 4b9w_A TDRD1, tudor domain-con 79.0 6 0.0002 27.1 6.1 56 33-88 79-142 (201)
32 2l55_A SILB,silver efflux prot 77.9 8.5 0.00029 23.3 5.9 39 54-94 25-71 (82)
33 2f41_A Transcription factor FA 77.8 7 0.00024 24.2 5.8 34 59-92 63-98 (121)
34 4a4f_A SurviVal of motor neuro 77.3 7.9 0.00027 22.1 5.8 34 33-66 22-56 (64)
35 2ckz_B C25, DNA-directed RNA p 77.2 3.6 0.00012 29.3 4.6 61 24-86 73-157 (218)
36 3bzc_A TEX; helix-turn-helix, 76.9 3 0.0001 35.2 4.7 57 34-92 655-722 (785)
37 1ah9_A IF1, initiation factor 76.7 5 0.00017 23.4 4.5 49 36-84 7-61 (71)
38 4ayb_E DNA-directed RNA polyme 76.0 8.1 0.00028 26.0 6.0 20 68-87 135-154 (180)
39 2asb_A Transcription elongatio 75.8 18 0.00062 26.5 8.2 61 30-92 5-78 (251)
40 2rcn_A Probable GTPase ENGC; Y 74.1 21 0.00071 27.0 8.4 53 37-90 48-116 (358)
41 2c35_B Human RPB7, DNA-directe 73.8 10 0.00035 25.4 6.1 61 26-87 75-155 (172)
42 2oqk_A Putative translation in 72.8 8.9 0.0003 24.8 5.3 49 34-83 31-85 (117)
43 4aid_A Polyribonucleotide nucl 72.8 0.73 2.5E-05 38.6 0.0 60 31-92 636-704 (726)
44 1k0r_A NUSA; two component arr 71.5 29 0.00099 26.7 8.7 61 24-86 122-193 (366)
45 1t9h_A YLOQ, probable GTPase E 70.9 19 0.00066 26.5 7.4 53 36-89 10-79 (307)
46 2nn6_I 3'-5' exoribonuclease C 69.9 25 0.00087 24.6 8.3 58 34-92 82-159 (209)
47 3d6x_A (3R)-hydroxymyristoyl-[ 68.9 7.5 0.00026 24.8 4.3 31 62-92 94-124 (146)
48 3cdi_A Polynucleotide phosphor 67.9 1.1 3.7E-05 37.4 0.0 58 34-92 628-694 (723)
49 3ayh_B DNA-directed RNA polyme 66.6 11 0.00038 26.2 5.1 61 24-85 73-160 (203)
50 2f3x_A Transcription factor FA 66.4 11 0.00037 25.0 4.8 32 60-91 100-133 (157)
51 2z0s_A Probable exosome comple 65.7 33 0.0011 24.3 8.2 55 34-91 67-136 (235)
52 2diq_A Tudor and KH domain-con 65.4 2 6.7E-05 27.0 0.9 55 33-87 46-108 (110)
53 3k67_A Putative dehydratase AF 64.5 13 0.00046 24.7 5.0 25 62-86 109-135 (159)
54 1u1z_A (3R)-hydroxymyristoyl-[ 64.1 10 0.00034 25.2 4.3 31 62-92 114-144 (168)
55 3fdr_A Tudor and KH domain-con 63.7 13 0.00044 22.4 4.4 34 33-66 41-74 (94)
56 2gll_A FABZ, (3R)-hydroxymyris 63.2 13 0.00043 24.9 4.7 30 63-92 119-148 (171)
57 1iq6_A (R)-hydratase, (R)-spec 62.5 23 0.0008 21.5 5.6 33 60-92 79-113 (134)
58 3psf_A Transcription elongatio 61.2 1.7 5.9E-05 37.7 0.0 57 34-92 906-974 (1030)
59 1mhn_A SurviVal motor neuron p 60.8 19 0.00066 19.9 5.9 34 33-66 17-51 (59)
60 4h4g_A (3R)-hydroxymyristoyl-[ 60.7 13 0.00043 24.9 4.3 30 63-92 105-134 (160)
61 2exd_A NFED short homolog; mem 59.7 25 0.00087 21.0 5.3 38 38-78 20-57 (80)
62 3bdl_A Staphylococcal nuclease 57.5 25 0.00087 27.8 6.2 54 33-86 424-487 (570)
63 1k3r_A Conserved protein MT000 57.0 18 0.00061 26.7 4.9 65 8-82 80-147 (268)
64 4i83_A 3-hydroxyacyl-[acyl-car 56.1 15 0.00053 23.9 4.1 30 63-92 101-130 (152)
65 2fhd_A RAD9 homolog, DNA repai 55.8 41 0.0014 23.0 6.2 49 28-78 16-73 (153)
66 1z6b_A Pffabz, fatty acid synt 54.1 18 0.0006 23.3 4.1 30 63-92 101-132 (154)
67 3s6w_A Tudor domain-containing 54.0 25 0.00084 19.0 4.4 34 33-66 15-49 (54)
68 2d9t_A Tudor domain-containing 52.9 33 0.0011 20.2 5.4 34 33-66 23-57 (78)
69 3h43_A Proteasome-activating n 52.5 32 0.0011 20.8 4.8 43 36-78 19-65 (85)
70 1e3p_A Guanosine pentaphosphat 52.2 1.2 4.1E-05 37.4 -2.4 57 34-92 668-738 (757)
71 3h0g_G DNA-directed RNA polyme 52.2 7.5 0.00026 26.3 2.0 64 25-89 77-158 (172)
72 2b3n_A Hypothetical protein AF 51.2 30 0.001 22.7 4.9 31 61-91 108-138 (159)
73 2je6_I RRP4, exosome complex R 50.8 66 0.0023 23.0 7.5 55 34-91 75-143 (251)
74 3d0f_A Penicillin-binding 1 tr 50.7 40 0.0014 20.6 6.7 50 27-79 26-94 (106)
75 3exz_A MAOC-like dehydratase; 50.4 26 0.00089 22.6 4.5 25 58-82 81-105 (154)
76 3ir3_A HTD2, 3-hydroxyacyl-thi 50.3 25 0.00087 22.5 4.4 32 60-91 89-122 (148)
77 3bnv_A CJ0977; virulence facto 50.1 44 0.0015 21.6 5.6 31 59-89 90-121 (152)
78 1y43_B Aspergillopepsin II hea 49.4 15 0.00053 25.3 3.3 37 54-93 45-81 (173)
79 2f4l_A Acetamidase, putative; 48.7 21 0.00072 26.7 4.2 19 67-85 71-89 (297)
80 1yez_A MM1357; MAR30, autostru 48.5 16 0.00055 20.8 2.9 49 34-87 14-62 (68)
81 3pnw_C Tudor domain-containing 48.0 41 0.0014 19.8 4.9 34 33-66 31-65 (77)
82 1fr3_A MOP, molybdate/tungstat 47.9 32 0.0011 18.6 5.8 49 35-83 7-62 (67)
83 2yue_A Protein neuralized; str 45.9 21 0.00071 24.3 3.5 26 66-91 42-68 (168)
84 4ffu_A Oxidase; structural gen 45.6 39 0.0013 22.5 4.9 21 62-82 110-130 (176)
85 2ifr_A Scytalidopepsin B; enzy 44.9 27 0.00092 24.8 4.1 37 54-93 71-107 (206)
86 3qii_A PHD finger protein 20; 44.3 54 0.0018 20.2 5.1 33 33-66 34-66 (85)
87 3b9t_A Twin-arginine transloca 42.9 24 0.00082 28.2 3.9 20 67-86 170-189 (484)
88 2k5h_A Conserved protein; stru 42.5 59 0.002 20.1 5.5 39 38-78 44-83 (101)
89 2ii1_A Acetamidase; 10172637, 42.2 22 0.00075 26.6 3.4 19 67-85 67-85 (301)
90 1g5v_A SurviVal motor neuron p 41.9 58 0.002 19.8 5.8 34 33-66 24-58 (88)
91 2e63_A KIAA1787 protein; struc 41.8 25 0.00086 24.0 3.4 26 66-91 43-69 (170)
92 2k75_A Uncharacterized protein 41.1 41 0.0014 20.7 4.2 43 49-92 39-83 (106)
93 1q6w_A Monoamine oxidase regul 40.8 33 0.0011 21.9 3.8 22 61-82 99-120 (161)
94 3m7n_A Putative uncharacterize 40.6 81 0.0028 21.2 8.1 47 34-81 58-124 (179)
95 3h8z_A FragIle X mental retard 40.5 68 0.0023 21.0 5.3 45 34-79 15-71 (128)
96 1gut_A Mopii, molybdate bindin 39.6 47 0.0016 18.1 5.5 49 35-83 7-63 (68)
97 3esi_A Uncharacterized protein 39.0 44 0.0015 21.7 4.2 30 62-92 71-100 (129)
98 1yvc_A MRR5; structure, autost 37.9 36 0.0012 19.4 3.3 49 34-87 16-64 (70)
99 2cwz_A Thioesterase family pro 37.5 71 0.0024 20.4 5.0 33 58-90 63-95 (141)
100 2wkn_A Formamidase, gamma-lact 37.3 41 0.0014 26.2 4.3 19 67-85 79-97 (409)
101 3mjj_A Predicted acetamidase/f 37.3 26 0.0009 26.2 3.1 19 67-85 69-87 (301)
102 3p8d_A Medulloblastoma antigen 35.9 66 0.0023 18.8 5.1 33 33-66 19-51 (67)
103 2z1c_A Hydrogenase expression/ 35.7 70 0.0024 19.0 4.8 43 38-81 6-48 (75)
104 3ntk_A Maternal protein tudor; 35.7 37 0.0013 22.5 3.5 55 33-87 61-121 (169)
105 2lx0_A Membrane fusion protein 35.0 13 0.00045 18.6 0.8 11 20-30 21-31 (32)
106 1hr0_W Translation initiation 34.8 20 0.0007 20.8 1.8 54 36-89 8-67 (71)
107 1jt8_A EIF-1A, probable transl 34.7 82 0.0028 19.8 4.8 48 35-83 20-73 (102)
108 2jpp_A Translational repressor 34.6 31 0.001 20.6 2.6 26 64-91 7-32 (70)
109 2c2i_A RV0130; hotdog, hydrata 34.5 40 0.0014 21.1 3.4 23 62-84 93-117 (151)
110 1d7q_A Translation initiation 34.3 1E+02 0.0036 20.6 8.7 57 34-91 30-92 (143)
111 3r8s_P 50S ribosomal protein L 34.1 48 0.0016 21.5 3.7 26 67-92 17-42 (114)
112 3v2d_T 50S ribosomal protein L 33.6 60 0.0021 22.0 4.2 27 67-93 20-46 (146)
113 2bti_A Carbon storage regulato 32.6 37 0.0013 19.8 2.7 27 63-91 8-34 (63)
114 3cp0_A Membrane protein implic 32.5 75 0.0026 18.4 5.4 39 38-78 28-69 (82)
115 3khp_A MAOC family protein; de 31.4 78 0.0027 23.2 4.9 31 60-92 256-286 (311)
116 1ixl_A Hypothetical protein PH 31.0 90 0.0031 18.8 4.8 25 61-85 73-97 (131)
117 2bx2_L Ribonuclease E, RNAse E 30.6 54 0.0018 26.3 4.1 54 34-87 46-119 (517)
118 2kbn_A Conserved protein; nucl 30.4 97 0.0033 19.0 4.8 57 36-92 19-84 (109)
119 2k14_A YUAF protein; NFED-like 29.6 87 0.003 18.3 5.6 41 38-78 24-69 (84)
120 2equ_A PHD finger protein 20-l 29.1 91 0.0031 18.3 4.6 32 33-65 22-53 (74)
121 2ba0_A Archeal exosome RNA bin 29.0 1.5E+02 0.0051 20.8 9.0 55 34-91 58-124 (229)
122 3go5_A Multidomain protein wit 27.7 1.8E+02 0.006 21.2 8.1 56 34-92 70-133 (285)
123 1uwv_A 23S rRNA (uracil-5-)-me 27.5 55 0.0019 24.7 3.6 28 68-95 43-70 (433)
124 3m9b_A Proteasome-associated A 27.2 91 0.0031 22.8 4.5 42 36-77 99-143 (251)
125 3qoo_A Uncharacterized protein 27.0 1.2E+02 0.0041 19.7 4.8 35 58-92 68-102 (138)
126 3pmi_A PWWP domain-containing 26.7 28 0.00097 23.3 1.6 34 25-59 10-44 (134)
127 2d9r_A Conserved hypothetical 26.6 13 0.00043 23.7 -0.2 16 67-82 89-104 (104)
128 2dgy_A MGC11102 protein; EIF-1 26.2 1.3E+02 0.0044 19.1 7.6 54 35-89 15-75 (111)
129 3kuv_A Fluoroacetyl coenzyme A 26.1 1.2E+02 0.0041 19.7 4.6 35 57-91 68-102 (139)
130 2wg5_A General control protein 26.1 1.2E+02 0.0042 18.8 7.0 51 25-79 30-85 (109)
131 1pn2_A Peroxisomal hydratase-d 25.7 1.4E+02 0.0048 21.1 5.3 30 61-92 226-255 (280)
132 2l3b_A Conserved protein found 25.6 50 0.0017 22.0 2.6 21 62-82 17-37 (130)
133 2jjq_A Uncharacterized RNA met 24.3 77 0.0026 24.1 3.9 29 67-95 42-70 (425)
134 2vl6_A SSO MCM N-TER, minichro 24.0 73 0.0025 22.6 3.5 12 67-78 223-234 (268)
135 3db3_A E3 ubiquitin-protein li 23.8 1.7E+02 0.006 20.0 5.2 51 34-84 25-108 (161)
136 1vpz_A Carbon storage regulato 23.2 64 0.0022 19.4 2.6 25 65-91 20-44 (73)
137 2wfw_A ARC; ATP-binding protei 23.2 1.5E+02 0.005 20.1 4.7 40 38-77 10-52 (153)
138 2bi0_A Hypothetical protein RV 22.3 1.1E+02 0.0038 22.6 4.3 31 62-92 276-310 (337)
139 1ltl_A DNA replication initiat 22.0 82 0.0028 22.5 3.4 12 67-78 210-221 (279)
140 2l7q_A Conserved protein found 21.5 51 0.0018 21.7 2.0 21 62-82 16-36 (124)
141 3kh8_A MAOC-like dehydratase; 21.0 1.9E+02 0.0064 21.3 5.4 24 60-83 276-299 (332)
142 2ja9_A Exosome complex exonucl 20.6 2E+02 0.007 19.4 6.7 51 34-85 8-68 (175)
143 3urg_A ALR1010 protein, CCBP; 20.5 47 0.0016 22.5 1.7 21 25-46 53-73 (146)
144 3cnr_A Type IV fimbriae assemb 20.0 92 0.0032 19.8 3.0 28 55-84 30-57 (117)
No 1
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=99.43 E-value=5.7e-13 Score=106.05 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=82.1
Q ss_pred cchhcHhHHHHHHhhhccccchHHHHhhhCCCCCeEEEEEEEEccCceEEEEeecceeeEEEeecCCCCCCCEEEEEEee
Q 034382 2 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVSVGAQIGDEVEVKVEE 81 (96)
Q Consensus 2 ~~~~~~~~~~a~~ieR~s~RyW~l~YL~~~~~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~~~~~~Gd~v~v~v~~ 81 (96)
+..++..-+.|..+||.+.+||+++||+++. |++|+|+|++-.+ +.++|.+++++++ ++++..+++||+|.|+|.+
T Consensus 373 ~~~~~~~er~a~~aer~~~~~~~~~~l~~~~-g~~f~g~vv~l~~-~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~ 448 (469)
T 2r7d_A 373 IAESQMNADATRQAERLSRRHHTLRFIAAQP-ERVWDAVVVDRRG-AQATLLIPDLAFD--VQVNTPAAPGTALQVQFAD 448 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCEEEEEEEEET-TEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEEEEEeC-cEEEEEECCCCeE--EecCCcCCCCCEEEEEEEE
Confidence 4567888999999999999999999999999 9999999999545 8999999999999 6677899999999999999
Q ss_pred ecCCCCeEEEEEec
Q 034382 82 AHPRDDIIYLKEVV 95 (96)
Q Consensus 82 vdP~~~~l~l~e~~ 95 (96)
||+.+..|.|+.+.
T Consensus 449 vd~~~~~i~f~~~~ 462 (469)
T 2r7d_A 449 IDLPQMRVRARSVL 462 (469)
T ss_dssp EETTTTEEEEEECC
T ss_pred EccCCCEEEEEEEh
Confidence 99999999998764
No 2
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.85 E-value=6.8e-09 Score=85.16 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=79.2
Q ss_pred chhcHhHHHHHHhhhccccchHHHHhhhCCCCC--eEEEEEEEEccCceEEEEeecceeeEEEeec--------------
Q 034382 3 SIVNMQTRIARRLSNTSLRYWIIEFLRRQPKER--QYRALVLRFIKDRTAALLLVEVGLQATAWVS-------------- 66 (96)
Q Consensus 3 ~~~~~~~~~a~~ieR~s~RyW~l~YL~~~~~~~--~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~-------------- 66 (96)
..++..-+.|..+||.+.+||+.+||+.+. |+ +|+|+|++..+ ..+-|.|++.|+|.-++.+
T Consensus 529 ~~~s~~er~a~~aer~~~~~~~~~~l~~~v-Ge~~~f~g~V~~V~~-~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~ 606 (644)
T 2id0_A 529 VQMAERRRLNRMAERDVGDWLYARFLKDKA-GTDTRFAAEIVDISR-GGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQE 606 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGT-TSCCCEEEEEEEEET-TEEEEEETTTCCEEEEEGGGTCSCGGGEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCceEEEEEEEEeC-CceEEEEcCCcEEEEEEchhccCcCceeEEccc
Confidence 456788899999999999999999999999 89 99999999888 8888999999999877762
Q ss_pred ---------CCCCCCCEEEEEEeeecCCCCeEEEEE
Q 034382 67 ---------VGAQIGDEVEVKVEEAHPRDDIIYLKE 93 (96)
Q Consensus 67 ---------~~~~~Gd~v~v~v~~vdP~~~~l~l~e 93 (96)
..+++||.|.|+|.+||+....|.|.=
T Consensus 607 ~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~~I~~~l 642 (644)
T 2id0_A 607 NGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 (644)
T ss_dssp TTEEEETTEEEEETTCEEEEEEEEEETTTTEEEEEE
T ss_pred ccEEEecCCCEeCCCCEEEEEEEEEeCCCCEEEEEE
Confidence 237899999999999999999999863
No 3
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.52 E-value=1.8e-07 Score=78.03 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=70.2
Q ss_pred chhcHhHHHHHHhhhccccchHHHHhhhCCCCCeEEEEEEEEccCceEEEEeecceeeEEEeec----------------
Q 034382 3 SIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVS---------------- 66 (96)
Q Consensus 3 ~~~~~~~~~a~~ieR~s~RyW~l~YL~~~~~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~---------------- 66 (96)
..++..-+.|..+||.+.+||+.+||+++. +.|+|+|++-.+ ..+.|.||++|+|..++++
T Consensus 641 ~~~s~~er~A~~aer~~~~~~~~~~l~~~~--~~~~g~V~~V~~-~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~ 717 (760)
T 2vnu_D 641 RNINRKHRNAQFAGRASIEYYVGQVMRNNE--STETGYVIKVFN-NGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEY 717 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--SEEEEEEEEEET-TEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhcCc--eEEEEEEEEEEC-CeEEEEEeCCCcEEEEEeccccCCCceeEEccccc
Confidence 456778889999999999999999999987 699999999777 8899999999999988763
Q ss_pred ------------CCCCCCCEEEEEEeeecCC---CCeEEEE
Q 034382 67 ------------VGAQIGDEVEVKVEEAHPR---DDIIYLK 92 (96)
Q Consensus 67 ------------~~~~~Gd~v~v~v~~vdP~---~~~l~l~ 92 (96)
..+++||.|.|+|..+|.. ...|.|.
T Consensus 718 ~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~~~~kI~ls 758 (760)
T 2vnu_D 718 KLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELL 758 (760)
T ss_dssp EEEECCTTCSSCEEEETTCEEEEEEC--------CCEEEC-
T ss_pred EEEEecCCCccCcEEecCCEEEEEEEEEECccccCCcEEEE
Confidence 1267899999999999987 4677653
No 4
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.41 E-value=5.2e-07 Score=77.22 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=73.9
Q ss_pred cchhcHhHHHHHHhhhccccchHHHHhhhCCCCCeEEEEEEEEccCceEEEEeecceeeEEEeecC--------------
Q 034382 2 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVSV-------------- 67 (96)
Q Consensus 2 ~~~~~~~~~~a~~ieR~s~RyW~l~YL~~~~~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~~-------------- 67 (96)
+..++..-+.|..+||.+..||+.+||+.+ |+.|+|+|++-.+ ..+.|.||++|+|..++++.
T Consensus 857 ~~~~s~~er~A~~aeR~~~~~~~~~~l~~~--ge~~~g~V~~V~~-~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~ 933 (977)
T 2wp8_J 857 CRNINRKHRNAQFAGRASIEYYVGQVMRNN--ESTETGYVIKVFN-NGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVE 933 (977)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEEECS-SEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTT
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHhhhhccc--ceEEEEEEEEEcC-CeEEEEEcCCCeEEEEEeccccCCCceeEEcccc
Confidence 345778889999999999999999999997 5799999999777 88999999999999887641
Q ss_pred --------------CCCCCCEEEEEEeeecCC---CCeEEE
Q 034382 68 --------------GAQIGDEVEVKVEEAHPR---DDIIYL 91 (96)
Q Consensus 68 --------------~~~~Gd~v~v~v~~vdP~---~~~l~l 91 (96)
.+++||.|.|+|..+|.. .+.|+|
T Consensus 934 ~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~~~~~kI~L 974 (977)
T 2wp8_J 934 YKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITSKRKAEL 974 (977)
T ss_dssp TEEEECCTTCCSCEEEETTCEEEEEECCCCCSSSCCCCCCE
T ss_pred cEEEeecCCCccCcEEccCCEEEEEEEEEcCcccCCCceEE
Confidence 267799999999999974 245655
No 5
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=97.15 E-value=0.0082 Score=36.31 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=47.6
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeecC-------CCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVSV-------GAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~~-------~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|..++|.|.+-.+ ..+-|-|++ +.+.-++.+. .+.+||.|.++|.++|+..+.|.|.
T Consensus 6 G~iv~G~V~~v~~-~G~fV~l~~-~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~ls 69 (80)
T 2k52_A 6 GKFYKGVVTRIEK-YGAFINLNE-QVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDFK 69 (80)
T ss_dssp TCEEEEEEEEEET-TEEEEEEET-TEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEEEEEeC-CEEEEEECC-CCEEEEEHHHCCcccceeeCCCCEEEEEEEEEECCCCEEEEE
Confidence 7899999999766 667777776 6777777761 4899999999999999998998876
No 6
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=96.64 E-value=0.0075 Score=37.54 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=50.4
Q ss_pred HHhhhCCCCCeEEEEEEEEccCceEEEEeecc-eeeEEEeec-C-----------CCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 26 EFLRRQPKERQYRALVLRFIKDRTAALLLVEV-GLQATAWVS-V-----------GAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 26 ~YL~~~~~~~~~~AvVl~~~~~~~~~vlL~dl-~le~~~~~~-~-----------~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
.|-..+. |+.++|.|. -.. --+-|-|+++ +.+.-++.+ . -+ +||.|.|+|.++|+.++.|.|.
T Consensus 5 ~y~~~~v-G~~~~G~V~-v~~-fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~ls 80 (88)
T 1luz_A 5 CYSLPNA-GDVIKGRVY-EKD-YALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVN 80 (88)
T ss_dssp CSCCCCT-TCEEEEEEE-EET-TEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEE
T ss_pred EecCCCC-CCEEEEEEE-EEc-cEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEE
Confidence 3555667 899999999 555 7778888876 788877776 2 14 8999999999999999988774
No 7
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=96.43 E-value=0.021 Score=36.41 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=51.9
Q ss_pred hhhccccchHHHHhhhCCCCCeEEEEEEEEccCceEEEEeecceeeEEEeecC-----------CCCCCCEEEEEEeeec
Q 034382 15 LSNTSLRYWIIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVSV-----------GAQIGDEVEVKVEEAH 83 (96)
Q Consensus 15 ieR~s~RyW~l~YL~~~~~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~~-----------~~~~Gd~v~v~v~~vd 83 (96)
+.......|.- ++.....|..+.|.|.+-.+ ..+-|-|++ +.+.-++.+. .+.+||.|.++|.++|
T Consensus 14 iKq~~~~p~~~-~~~~~~~G~iv~G~V~~v~~-~G~fV~l~~-~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd 90 (109)
T 2khj_A 14 LVPRGSHMFNN-WVALNKKGAIVTGKVTAVDA-KGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVD 90 (109)
T ss_dssp -------CHHH-HTTTCCSSSEEEEEEEEECS-SCEEEECST-TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEE
T ss_pred hhhcccCHHHH-HhhcCCCCCEEEEEEEEEEC-CeEEEEECC-CCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEE
Confidence 34445567763 45554449999999999776 667777765 6666666542 4889999999999999
Q ss_pred CCCCeEEEE
Q 034382 84 PRDDIIYLK 92 (96)
Q Consensus 84 P~~~~l~l~ 92 (96)
+....|.|.
T Consensus 91 ~~~~ki~LS 99 (109)
T 2khj_A 91 RKNRAISLS 99 (109)
T ss_dssp TTTTEEEEE
T ss_pred CCCCEEEEE
Confidence 988887764
No 8
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=96.28 E-value=0.068 Score=35.20 Aligned_cols=57 Identities=28% Similarity=0.249 Sum_probs=45.9
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec-----------CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS-----------VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~-----------~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|..+.|.|..-.. .-+-|-|++ +.+.-++.+ ..+++||.|.|+|.++|+.++.|.|.
T Consensus 8 G~iv~G~V~~i~~-~G~FV~l~~-~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LS 75 (130)
T 2k4k_A 8 GSVYTGKVTGLQA-YGAFVALDE-ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLS 75 (130)
T ss_dssp TCEEEEEEEEEET-TEEEEEEET-TEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEEEEEeC-CeEEEEECC-CcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEE
Confidence 7889999998766 666677755 577777765 24899999999999999988888874
No 9
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=96.19 E-value=0.051 Score=34.97 Aligned_cols=57 Identities=23% Similarity=0.224 Sum_probs=44.2
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec------------CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS------------VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~------------~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|..++|.|.+-.+ .-+-|-|++ +.+.-++.+ ..+.+||.|.|+|.++|+.++.|.|.
T Consensus 31 G~~~~G~V~~v~~-~G~FV~l~~-~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~ls 99 (115)
T 2khi_A 31 GTKLTGRVTNLTD-YGCFVEIEE-GVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLG 99 (115)
T ss_dssp SCEEEEEEEEEET-TEEEEECST-TCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEEC
T ss_pred CCEEEEEEEEEEC-CEEEEEECC-CCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEE
Confidence 8899999998766 555666643 466666643 25899999999999999988888774
No 10
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.97 E-value=0.088 Score=33.23 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=44.2
Q ss_pred CCeEEEEEEEEccCceEEEEeecc--eeeEEEeecC------------CCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEV--GLQATAWVSV------------GAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl--~le~~~~~~~------------~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|..+.|.|.+-.. .-+-|-|+++ +.+.-++.+. .+++||.|.++|.++|+ +.|.|.
T Consensus 13 G~i~~G~V~~v~~-fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LS 82 (103)
T 2eqs_A 13 GDIYNGKVTSIMQ-FGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLS 82 (103)
T ss_dssp TCEEEEEEEEECS-SCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEE
T ss_pred CCEEEEEEEEEec-cEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEE
Confidence 8899999998766 6677788775 7777777652 28899999999999998 466653
No 11
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=95.63 E-value=0.089 Score=36.58 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=49.1
Q ss_pred HHhhhC---CCCCeEEEEEEEEccCceEEEEeec-ceeeEEEeec-----------CCCCCCCEEEEEEeeecCCCCeEE
Q 034382 26 EFLRRQ---PKERQYRALVLRFIKDRTAALLLVE-VGLQATAWVS-----------VGAQIGDEVEVKVEEAHPRDDIIY 90 (96)
Q Consensus 26 ~YL~~~---~~~~~~~AvVl~~~~~~~~~vlL~d-l~le~~~~~~-----------~~~~~Gd~v~v~v~~vdP~~~~l~ 90 (96)
+|++.+ . |..+.|.|..-.. --+-|-|++ -+++.-++.+ .-+++||.|.++|.++|+..+.|.
T Consensus 6 ~~~~~~~p~~-G~iv~G~V~~i~~-fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~ 83 (175)
T 2a19_A 6 RFYENKYPEI-DDIVMVNVQQIAE-MGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYID 83 (175)
T ss_dssp CSSSSSSCCT-TCEEEEEEEEEET-TEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEE
T ss_pred EEhhhcCCCC-CCEEEEEEEEEec-ceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEE
Confidence 456665 4 8999999988655 666677742 3566666554 348899999999999999999988
Q ss_pred EE
Q 034382 91 LK 92 (96)
Q Consensus 91 l~ 92 (96)
|.
T Consensus 84 LS 85 (175)
T 2a19_A 84 LS 85 (175)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 12
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=95.61 E-value=0.11 Score=38.59 Aligned_cols=65 Identities=31% Similarity=0.219 Sum_probs=51.0
Q ss_pred HhhhCC-CCCeEEEEEEEEccCceEEEEeecc-eeeEEEeec-----------CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 27 FLRRQP-KERQYRALVLRFIKDRTAALLLVEV-GLQATAWVS-----------VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 27 YL~~~~-~~~~~~AvVl~~~~~~~~~vlL~dl-~le~~~~~~-----------~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|...++ .|....|.|.+-.. ..+-|-|+++ +++.-++.+ .-+++||.|.++|.++|+.++.|.|.
T Consensus 4 ~~~~~p~~Gdiv~G~V~~I~~-fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LS 81 (275)
T 3aev_A 4 KAREYPEEGEFVVATVKRIHN-YGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLS 81 (275)
T ss_dssp ---CCCCTTCEEEEEEEEEET-TEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred ccccCCCCCCEEEEEEEEEEC-cEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEE
Confidence 455554 38999999999766 7778888774 788888776 24889999999999999999988875
No 13
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.41 E-value=0.043 Score=35.79 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=46.9
Q ss_pred CCCCCeEEEEEEEEccCceEEEEeecceeeEEEeec-----------CCCCCCCEEEEEEeeecCCC--CeEEEE
Q 034382 31 QPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVS-----------VGAQIGDEVEVKVEEAHPRD--DIIYLK 92 (96)
Q Consensus 31 ~~~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~-----------~~~~~Gd~v~v~v~~vdP~~--~~l~l~ 92 (96)
+. |..+.|.|..-.. .-+-|-|+++..+.-++.+ ..+++||.|.|+|.++|+.. +.|.|.
T Consensus 21 ~v-G~iv~G~V~~I~~-fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LS 93 (119)
T 2cqo_A 21 AL-YTIFQGEVAMVTD-YGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLS 93 (119)
T ss_dssp CT-TCEEEEEEEEEET-TEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEE
T ss_pred CC-CCEEEEEEEEEeC-ceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEE
Confidence 44 8999999999777 7777888776667777665 13899999999999999864 466663
No 14
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=95.30 E-value=0.13 Score=33.01 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=43.7
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec------------CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS------------VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~------------~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|..++|.|..-.. .-+-|-|..-+.+.-.+.+ ..+++||.|.++|.++|+..+.|.|.
T Consensus 22 G~i~~G~V~~v~~-fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Ls 91 (119)
T 1wi5_A 22 GMLLTGTVSSLED-HGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLS 91 (119)
T ss_dssp TCEEEEEEEEECS-SEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEE
T ss_pred CCEEEEEEEEEeC-ceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEE
Confidence 8999999999766 6677777622333333332 35999999999999999998888775
No 15
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=95.05 E-value=0.18 Score=35.24 Aligned_cols=60 Identities=20% Similarity=0.109 Sum_probs=44.6
Q ss_pred CCCCCeEEEEEEEEccCceEEEEeec-ceeeEEEeec-----------CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 31 QPKERQYRALVLRFIKDRTAALLLVE-VGLQATAWVS-----------VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 31 ~~~~~~~~AvVl~~~~~~~~~vlL~d-l~le~~~~~~-----------~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
+. |....|.|..-.. --+-|-|++ -+++.-++.+ .-+++||.|.|+|.++|+..+.|.|.
T Consensus 14 ~~-G~iv~G~V~~I~~-fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LS 85 (182)
T 1kl9_A 14 EV-EDVVMVNVRSIAE-MGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLS 85 (182)
T ss_dssp CT-TCEEEEEEEEECS-SEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEE
T ss_pred CC-CCEEEEEEEEEec-cEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEE
Confidence 45 8999999988665 666677743 3566666654 34889999999999999999998875
No 16
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=94.47 E-value=0.17 Score=38.23 Aligned_cols=65 Identities=22% Similarity=0.167 Sum_probs=50.4
Q ss_pred HHhhhC---CCCCeEEEEEEEEccCceEEEEeec-ceeeEEEeec-----------CCCCCCCEEEEEEeeecCCCCeEE
Q 034382 26 EFLRRQ---PKERQYRALVLRFIKDRTAALLLVE-VGLQATAWVS-----------VGAQIGDEVEVKVEEAHPRDDIIY 90 (96)
Q Consensus 26 ~YL~~~---~~~~~~~AvVl~~~~~~~~~vlL~d-l~le~~~~~~-----------~~~~~Gd~v~v~v~~vdP~~~~l~ 90 (96)
+|+..+ . |..+.|.|.+-.. ..+-|-|.+ -+.+.-++.+ .-+++||.|.++|.++||..+.|.
T Consensus 4 ~f~~~~~~~v-G~iv~G~V~~I~~-fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~ 81 (308)
T 1q8k_A 4 RFYQHKFPEV-EDVVMVNVRSIQE-MGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYID 81 (308)
T ss_dssp CSSSSCCCSS-CCEEEEEEEEEET-TEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEE
T ss_pred EehhhcCCCC-CCEEEEEEEEEeC-cEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEE
Confidence 345443 4 8899999998766 777777865 4677777665 237899999999999999999988
Q ss_pred EE
Q 034382 91 LK 92 (96)
Q Consensus 91 l~ 92 (96)
|.
T Consensus 82 LS 83 (308)
T 1q8k_A 82 LS 83 (308)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 17
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=91.84 E-value=1.7 Score=32.23 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=48.5
Q ss_pred hhCCCCCeEEEEEEEEccCceEEEEeecceeeEEEeec---CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 29 RRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVS---VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 29 ~~~~~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~---~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
...+.|+..+|.|.+... --+-|..-+=+++.-++.+ ..+++||.|.++|..+||-++.|.|.
T Consensus 148 ~~~~~G~~V~g~V~~i~~-~G~fV~~i~~g~~Glih~SEl~~~l~~Gd~v~~~V~~id~~d~kI~LS 213 (285)
T 3go5_A 148 YNNMQNQNWPAIVYRLKL-SGTFVYLPENNMLGFIHPSERYAEPRLGQVLDARVIGFREVDRTLNLS 213 (285)
T ss_dssp CSCCTTCEEEEEEEEEET-TEEEEEETTTTEEEEECGGGCSSCCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred hhCCCCCEEEEEEEEEeC-CcEEEEEeCCCeEEEEEHHHccccCCCCCEEEEEEEEEECCCCeEEEE
Confidence 334448999999999655 5455514555677777776 67999999999999999988888774
No 18
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=91.61 E-value=0.44 Score=35.02 Aligned_cols=58 Identities=24% Similarity=0.079 Sum_probs=45.8
Q ss_pred CCeEEEEEEEEccCceEEEEeec-ceeeEEEeecC-----------CCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVE-VGLQATAWVSV-----------GAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~d-l~le~~~~~~~-----------~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|..+.|.|.+-.. .-+-|-|++ -+.+.-++.+. -+.+||.|.|+|.++|+.++.|.|.
T Consensus 12 G~iv~G~V~~I~~-~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LS 81 (266)
T 3cw2_C 12 GEILIATVKQVFD-YGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVS 81 (266)
T ss_dssp TCEEEEEEEECCS-SSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEE
T ss_pred CCEEEEEEEEEec-cEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEE
Confidence 7899999998666 667777765 46776666651 2889999999999999988887764
No 19
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=89.20 E-value=2.6 Score=28.67 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=38.2
Q ss_pred HhhhCCCCCeEEEEEEEEccCceEEEEeecceeeEEEeec----------------------CCCCCCCEEEEEEeeecC
Q 034382 27 FLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVS----------------------VGAQIGDEVEVKVEEAHP 84 (96)
Q Consensus 27 YL~~~~~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~----------------------~~~~~Gd~v~v~v~~vdP 84 (96)
+++-.. |..++|.|.+-.+ .-+-|-|.. ++.-++.+ .-+++||.|.++|.++|+
T Consensus 76 ~~~~~~-Gev~~G~V~~v~~-~G~fV~l~~--~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~ 151 (187)
T 1go3_E 76 VYIPEM-YELIEGEVVDVVE-FGSFVRLGP--LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISL 151 (187)
T ss_dssp EECCCT-TCEEEEEEEEEET-TEEEEECSS--SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEEC
T ss_pred EEccCC-CCEEEEEEEEEeC-cEEEEEEcC--ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEc
Confidence 356666 8999999988665 444444422 33333321 347899999999999998
Q ss_pred CCC
Q 034382 85 RDD 87 (96)
Q Consensus 85 ~~~ 87 (96)
...
T Consensus 152 ~~~ 154 (187)
T 1go3_E 152 KAE 154 (187)
T ss_dssp CC-
T ss_pred ccC
Confidence 654
No 20
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=86.27 E-value=2.7 Score=37.12 Aligned_cols=57 Identities=12% Similarity=-0.027 Sum_probs=45.8
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec------------CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS------------VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~------------~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|...+|.|..-.. ..+-|-| +.|++.-++.+ .-+++||.|.|+|..||+....|.|.
T Consensus 903 G~iv~G~V~~V~~-fGaFV~L-~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LS 971 (1219)
T 3psi_A 903 GSIIPVRVERFWH-NDIICTT-NSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVS 971 (1219)
T ss_dssp TCEEEEEEEEECS-SCEEEEC-TTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEE
T ss_pred CCEEEEEEEEEec-ceEEEEe-CCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEE
Confidence 8999999998666 6666666 66778777664 23789999999999999988888775
No 21
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=85.87 E-value=4.2 Score=27.70 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=44.7
Q ss_pred CCCeEEEEEEEEccCceEEEEeecceeeEEEeec--------CCCCCCCEEEEEEeeecCCCC
Q 034382 33 KERQYRALVLRFIKDRTAALLLVEVGLQATAWVS--------VGAQIGDEVEVKVEEAHPRDD 87 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~--------~~~~~Gd~v~v~v~~vdP~~~ 87 (96)
++.++.|.|++..+ +.+.|.+-|+|-...++.+ -.--|.+.+.+++..++|+.+
T Consensus 65 d~~wyRa~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~~ 126 (218)
T 2wac_A 65 DNQWYRAKVERVQG-SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPTD 126 (218)
T ss_dssp TCCEEEEEEEEEET-TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCSS
T ss_pred CCeEEEEEEEEecC-CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCCC
Confidence 36789999999888 9999999999998887654 123589999999999998764
No 22
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=85.25 E-value=4.8 Score=24.76 Aligned_cols=56 Identities=11% Similarity=0.222 Sum_probs=39.7
Q ss_pred eEEEEEEEEccC-ceEEEE---eecce---eeEEEeec-----CCCCCCCEEEEEEeeecCCCCeEEEEEe
Q 034382 36 QYRALVLRFIKD-RTAALL---LVEVG---LQATAWVS-----VGAQIGDEVEVKVEEAHPRDDIIYLKEV 94 (96)
Q Consensus 36 ~~~AvVl~~~~~-~~~~vl---L~dl~---le~~~~~~-----~~~~~Gd~v~v~v~~vdP~~~~l~l~e~ 94 (96)
.-+|.|...-.+ +..+|. ||+|+ |.-...++ .++++||.|...+.+.+ +.+.+..+
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~---~~~~it~i 84 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG---NLSLLQDI 84 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET---TEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEEEEEeC---CEEEEEEE
Confidence 346777765544 678888 88886 55555443 67999999999999876 55666554
No 23
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=85.21 E-value=6.2 Score=30.15 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=45.8
Q ss_pred hhCCCCCeEEEEEEEEccCceEEEEeecceeeEEEeec-----CCCCCCCEEEEEEeeecCCCC--eEEEE
Q 034382 29 RRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVS-----VGAQIGDEVEVKVEEAHPRDD--IIYLK 92 (96)
Q Consensus 29 ~~~~~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~-----~~~~~Gd~v~v~v~~vdP~~~--~l~l~ 92 (96)
..+. |..-.|.|.+.-+ +.+.|-|. +.|.-++.+ ..+++||++.+.|.++|+-.. .|.++
T Consensus 131 ~~~~-GeIV~G~V~ri~~-~~v~VDlG--k~EgiLp~sE~ip~E~~~vGD~Vkv~V~~V~~~~kg~~I~LS 197 (344)
T 1hh2_P 131 SELK-GTVTTAEVIRVMG-EWADIRIG--KLETRLPKKEWIPGEEIKAGDLVKVYIIDVVKTTKGPKILVS 197 (344)
T ss_dssp TCCT-TCEEEEEEEEECS-SEEEEEET--TEEEEEEGGGSCTTCCCCTTCEEEEEEEEEEEETTEEEEEEE
T ss_pred hhcC-CCEEEEEEEEEec-CcEEEEeC--CeEEEEeHHHcCCCcCCCCCCEEEEEEEEEEcCCCCcEEEEE
Confidence 4445 8899999999776 77777664 688888886 458899999999999996443 55543
No 24
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.36 E-value=1.6 Score=27.30 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=30.4
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS 66 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~ 66 (96)
++++.|-|++-.+++.+.|++-|+|.+..++.+
T Consensus 36 n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~ 68 (85)
T 2eqk_A 36 NQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVD 68 (85)
T ss_dssp CCEEEEEEEEECSSSEEEEECTTTCCEEEEETT
T ss_pred CeEEEEEEEEecCCCeEEEEEEccCCEEEEEcc
Confidence 478899999999988999999999999999976
No 25
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=84.18 E-value=5.1 Score=24.17 Aligned_cols=56 Identities=11% Similarity=0.222 Sum_probs=39.5
Q ss_pred eEEEEEEEEccC-ceEEEE---eecce---eeEEEeec-----CCCCCCCEEEEEEeeecCCCCeEEEEEe
Q 034382 36 QYRALVLRFIKD-RTAALL---LVEVG---LQATAWVS-----VGAQIGDEVEVKVEEAHPRDDIIYLKEV 94 (96)
Q Consensus 36 ~~~AvVl~~~~~-~~~~vl---L~dl~---le~~~~~~-----~~~~~Gd~v~v~v~~vdP~~~~l~l~e~ 94 (96)
.-+|.|...-.+ +..+|. ||+|+ |.-...++ .++++||.|...+.+.+ +.+.+..+
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~---~~~~it~i 76 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG---NLSLLQDI 76 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET---TEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEEEEEeC---CEEEEEEE
Confidence 346777765544 678887 88886 55555543 67999999999999876 55666554
No 26
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=83.88 E-value=4.2 Score=24.84 Aligned_cols=56 Identities=13% Similarity=-0.004 Sum_probs=41.5
Q ss_pred CeEEEEEEEEccCceEEEEeec-ceeeEEEeec-----CCCCCCCEEEEEEeeecCCCCeEE
Q 034382 35 RQYRALVLRFIKDRTAALLLVE-VGLQATAWVS-----VGAQIGDEVEVKVEEAHPRDDIIY 90 (96)
Q Consensus 35 ~~~~AvVl~~~~~~~~~vlL~d-l~le~~~~~~-----~~~~~Gd~v~v~v~~vdP~~~~l~ 90 (96)
-+.+|+|++-++.+.+.|.+++ --..+.++-+ ..+-|||.|.|.+..-|+-.+.|.
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEE
Confidence 4679999999954899999987 2455555544 358999999998877766555544
No 27
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=83.54 E-value=1.8 Score=30.51 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=36.3
Q ss_pred HhhhCCCCCeEEEEEEEEccCceEEEEeecceeeEEEeec------CCCC----CCCEEEEEEeeecCCCC
Q 034382 27 FLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVS------VGAQ----IGDEVEVKVEEAHPRDD 87 (96)
Q Consensus 27 YL~~~~~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~------~~~~----~Gd~v~v~v~~vdP~~~ 87 (96)
++....+|.++.|.|++...++.+.|.+.|+|-...++.+ ..+. |.+.+..++..++|+.+
T Consensus 72 c~a~~~d~~wyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~~ 142 (246)
T 2hqx_A 72 CIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQD 142 (246)
T ss_dssp EEEECTTSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC-------------
T ss_pred EEEEcCCCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCCC
Confidence 3444334788999999987448999999999998888664 2332 89999999999998764
No 28
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=82.80 E-value=6.1 Score=26.59 Aligned_cols=62 Identities=10% Similarity=0.005 Sum_probs=39.4
Q ss_pred HHHHhhhCCCCCeEEEEEEEEccCceEEEEeecceeeEEEeec---------------------CCCCCCCEEEEEEeee
Q 034382 24 IIEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVS---------------------VGAQIGDEVEVKVEEA 82 (96)
Q Consensus 24 ~l~YL~~~~~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~---------------------~~~~~Gd~v~v~v~~v 82 (96)
...|++.+. |+.++|.|..-.+ --+-|-|.. .+.-++.+ .-++.||.|+|+|.++
T Consensus 75 ~~~~~~~~~-Gev~~G~V~~v~~-fG~FV~l~~--~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~v 150 (171)
T 1y14_B 75 RAVVFKPFK-GEVVDGTVVSCSQ-HGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGC 150 (171)
T ss_dssp EEEEECCCT-TCEEEEEEEEEET-TEEEEEETT--EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEE
T ss_pred EEEEccCCC-CCEEEEEEEEEec-CEEEEEecC--eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEE
Confidence 345677777 8999999887555 333333321 12211111 2378999999999999
Q ss_pred cCCCCeE
Q 034382 83 HPRDDII 89 (96)
Q Consensus 83 dP~~~~l 89 (96)
|+....+
T Consensus 151 d~~~~~~ 157 (171)
T 1y14_B 151 ISQVSSI 157 (171)
T ss_dssp EEETTEE
T ss_pred EcCCCCc
Confidence 9876543
No 29
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=82.24 E-value=3.8 Score=29.14 Aligned_cols=61 Identities=10% Similarity=0.018 Sum_probs=39.1
Q ss_pred HHHhhhCCCCCeEEEEEEEEccCceEEEEeecceeeEEEeec---------------------CCCCCCCEEEEEEeeec
Q 034382 25 IEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVS---------------------VGAQIGDEVEVKVEEAH 83 (96)
Q Consensus 25 l~YL~~~~~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~---------------------~~~~~Gd~v~v~v~~vd 83 (96)
..|++.+. |+.++|.|..-.. --+-|-|.. .+.-++.+ .-+++||.|+|+|.++|
T Consensus 76 ~i~~~p~v-Gev~~G~V~~vt~-fG~FVelg~--~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd 151 (215)
T 2b8k_G 76 AVVFKPFK-GEVVDGTVVSCSQ-HGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCI 151 (215)
T ss_dssp EEEECCCT-TEEEEEEEEEEET-TEEEEECTT--SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEE
T ss_pred hheeccCC-CCEEEEEEEEEec-ceEEEEecC--cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEE
Confidence 34677777 8999999887555 333333321 22222221 23788999999999999
Q ss_pred CCCCeE
Q 034382 84 PRDDII 89 (96)
Q Consensus 84 P~~~~l 89 (96)
+....+
T Consensus 152 ~~~~~i 157 (215)
T 2b8k_G 152 SQVSSI 157 (215)
T ss_dssp EETTEE
T ss_pred cCCCcc
Confidence 876543
No 30
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=79.36 E-value=6.6 Score=27.46 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=45.4
Q ss_pred CCCeEEEEEEEEccCceEEEEeecceeeEEEeec--C------CCCCCCEEEEEEeeecCCCCe
Q 034382 33 KERQYRALVLRFIKDRTAALLLVEVGLQATAWVS--V------GAQIGDEVEVKVEEAHPRDDI 88 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~--~------~~~~Gd~v~v~v~~vdP~~~~ 88 (96)
+|.++.|.|++...++.+.|.+-|+|-.-.++.+ . .--|.+.+..++..+.|.++.
T Consensus 79 d~~WyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~~~~ 142 (226)
T 4b9x_A 79 DGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPPNKH 142 (226)
T ss_dssp TTEEEEEEEEEECSSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECSSSS
T ss_pred CCeEEEEEEEEECCCCeEEEEEEecCCEEEEEHHHhccChHHHcccccceEEEEEecEECCCCC
Confidence 3678899999977657899999999999888776 1 234789999999999987653
No 31
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=78.96 E-value=6 Score=27.14 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=45.1
Q ss_pred CCCeEEEEEEEEccCceEEEEeecceeeEEEeec--C------CCCCCCEEEEEEeeecCCCCe
Q 034382 33 KERQYRALVLRFIKDRTAALLLVEVGLQATAWVS--V------GAQIGDEVEVKVEEAHPRDDI 88 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~--~------~~~~Gd~v~v~v~~vdP~~~~ 88 (96)
+|.++.|.|++...++.+.|.+-|+|-.-.++.+ . .--|.+.+..++..+.|.++.
T Consensus 79 d~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~~~~ 142 (201)
T 4b9w_A 79 DGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPPNKH 142 (201)
T ss_dssp TTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECSSSS
T ss_pred CCeEEEEEEEEECCCCeEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcCEEcCCCC
Confidence 3678899999977657899999999999888765 1 234789999999999987653
No 32
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=77.91 E-value=8.5 Score=23.30 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=27.2
Q ss_pred eecce---eeEEEeec-----CCCCCCCEEEEEEeeecCCCCeEEEEEe
Q 034382 54 LVEVG---LQATAWVS-----VGAQIGDEVEVKVEEAHPRDDIIYLKEV 94 (96)
Q Consensus 54 L~dl~---le~~~~~~-----~~~~~Gd~v~v~v~~vdP~~~~l~l~e~ 94 (96)
||+|+ |.-..++. ..+++||.|...+.+.+ .+.+.+..+
T Consensus 25 I~~l~wPaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~--~g~~~it~i 71 (82)
T 2l55_A 25 IPSAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRLDP--HGMATLVTV 71 (82)
T ss_dssp CTTTTCCCEEEEEECCTTCCCSSCSTTCEEEEEEEEET--TTEEEEEEE
T ss_pred ccccCCCceEEEEEcCChhHhhcCCCCCEEEEEEEECC--CCeEEEEEE
Confidence 66675 44444443 67999999999999886 336666554
No 33
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=77.83 E-value=7 Score=24.25 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=25.1
Q ss_pred eeEEEeecCCCCCCCEEEEEEeee--cCCCCeEEEE
Q 034382 59 LQATAWVSVGAQIGDEVEVKVEEA--HPRDDIIYLK 92 (96)
Q Consensus 59 le~~~~~~~~~~~Gd~v~v~v~~v--dP~~~~l~l~ 92 (96)
....+++..++.|||.|.++..-+ .++.+...+.
T Consensus 63 ~~~~i~F~~Pv~~Gd~l~~~a~v~~~~~~~~~~~v~ 98 (121)
T 2f41_A 63 ASADIRFTRQVKQGERVVAKAKVTAVEKEKGRTVVE 98 (121)
T ss_dssp EEEEEEECSCCBTTCEEEEEEEEEEECSSSSCEEEE
T ss_pred EEeeEEEeCCcCCCCEEEEEEEEEEEEccCCEEEEE
Confidence 344566778999999999988777 7777665443
No 34
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=77.33 E-value=7.9 Score=22.08 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=28.9
Q ss_pred CCCeEEEEEEEEccC-ceEEEEeecceeeEEEeec
Q 034382 33 KERQYRALVLRFIKD-RTAALLLVEVGLQATAWVS 66 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~-~~~~vlL~dl~le~~~~~~ 66 (96)
+|.+++|.|.+-..+ +.+.|...|+|=.-.++.+
T Consensus 22 Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~ 56 (64)
T 4a4f_A 22 DGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL 56 (64)
T ss_dssp TSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHH
Confidence 478999999998765 7999999999888777775
No 35
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=77.18 E-value=3.6 Score=29.30 Aligned_cols=61 Identities=5% Similarity=-0.040 Sum_probs=39.5
Q ss_pred HHHHhhhCCCCCeEEEEEEEEccCceEEEEeec----------ce-----ee-----EEE---ee-cCCCCCCCEEEEEE
Q 034382 24 IIEFLRRQPKERQYRALVLRFIKDRTAALLLVE----------VG-----LQ-----ATA---WV-SVGAQIGDEVEVKV 79 (96)
Q Consensus 24 ~l~YL~~~~~~~~~~AvVl~~~~~~~~~vlL~d----------l~-----le-----~~~---~~-~~~~~~Gd~v~v~v 79 (96)
+.+|++.+. |+.++|+|..-.+ --.-|.|++ +. ++ ... .. ...+++||.|++||
T Consensus 73 k~~~f~p~v-GEv~~G~Is~Vt~-fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV 150 (218)
T 2ckz_B 73 RAVVFKPFL-GEIVTGWISKCTA-EGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150 (218)
T ss_dssp EEEEECCCT-TCEEEEEEEEEET-TEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEE
T ss_pred EEEEecCCC-CCEEEEEEEEEcc-CcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEE
Confidence 456888888 9999999988666 333333322 21 00 011 01 13488999999999
Q ss_pred eeecCCC
Q 034382 80 EEAHPRD 86 (96)
Q Consensus 80 ~~vdP~~ 86 (96)
.++|..+
T Consensus 151 ~~v~~~~ 157 (218)
T 2ckz_B 151 EREVFVD 157 (218)
T ss_dssp EEEEECC
T ss_pred EEEEccc
Confidence 9998755
No 36
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=76.95 E-value=3 Score=35.17 Aligned_cols=57 Identities=21% Similarity=0.132 Sum_probs=41.6
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec-----------CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS-----------VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~-----------~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|..++|.|..-.. -.+-|-| +.+.+.-++.+ .-+++||.|.|+|.+||+..+.|.|.
T Consensus 655 G~iv~G~V~~V~~-fGaFV~l-~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LS 722 (785)
T 3bzc_A 655 GMVLEGVVTNVTN-FGAFVDI-GVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLS 722 (785)
T ss_dssp TCBCCCEEEEEET-TEEEEEC-SSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEEC
T ss_pred CCEEEEEEEEEec-CCeEEEe-CCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEE
Confidence 7888888887555 4444444 23455555554 23889999999999999999998875
No 37
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=76.71 E-value=5 Score=23.45 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=33.0
Q ss_pred eEEEEEEEEccCceEEEEeec-ceeeEEEeec-----CCCCCCCEEEEEEeeecC
Q 034382 36 QYRALVLRFIKDRTAALLLVE-VGLQATAWVS-----VGAQIGDEVEVKVEEAHP 84 (96)
Q Consensus 36 ~~~AvVl~~~~~~~~~vlL~d-l~le~~~~~~-----~~~~~Gd~v~v~v~~vdP 84 (96)
..+|.|++-++.+.+.|.+++ --..+.++-. ....+||.|.+.+..-|+
T Consensus 7 ~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~ 61 (71)
T 1ah9_A 7 EMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDL 61 (71)
T ss_dssp ECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCT
T ss_pred EEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCC
Confidence 457999998886788888865 2344555544 234599999988653333
No 38
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=76.04 E-value=8.1 Score=26.02 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=15.9
Q ss_pred CCCCCCEEEEEEeeecCCCC
Q 034382 68 GAQIGDEVEVKVEEAHPRDD 87 (96)
Q Consensus 68 ~~~~Gd~v~v~v~~vdP~~~ 87 (96)
-+++||.|+|||.++|+..+
T Consensus 135 ~~~~Gd~VrvkV~~v~~~~~ 154 (180)
T 4ayb_E 135 VIQKGDKVRARVISVASTVT 154 (180)
T ss_dssp CCCTTCEEEEEEEEECC---
T ss_pred EECCCCEEEEEEEEEeCCCC
Confidence 48999999999999997543
No 39
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=75.81 E-value=18 Score=26.52 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=43.7
Q ss_pred hCCCCCeEEEEEEE----EccCceEEEEeec--ceeeEEEeec-----CCCCCCCEEEEEEeeecCCC--CeEEEE
Q 034382 30 RQPKERQYRALVLR----FIKDRTAALLLVE--VGLQATAWVS-----VGAQIGDEVEVKVEEAHPRD--DIIYLK 92 (96)
Q Consensus 30 ~~~~~~~~~AvVl~----~~~~~~~~vlL~d--l~le~~~~~~-----~~~~~Gd~v~v~v~~vdP~~--~~l~l~ 92 (96)
.+. |..-.|.|.+ .-+ +.+.|-|-. =+.|.-++.+ ..+++||+|.+-|.+|+.-. .+|-|+
T Consensus 5 ~r~-GeIVtG~V~r~~~~v~~-~~ViVdlG~~~~k~EgiLP~~Eqip~E~~~~GDrIkayV~~V~~~~~gpqIiLS 78 (251)
T 2asb_A 5 TRE-GEIVAGVIQRDSRANAR-GLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLS 78 (251)
T ss_dssp CCT-TCEEEEEEECCHHHHHT-TCEEEEECSSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEECCSSSCEEEEE
T ss_pred hcC-CCEEEEEEEEccccccC-CeEEEEeCCCCcceEEEEcHHHcCCCccCCCCCEEEEEEEEEEcCCCCCEEEEE
Confidence 345 7888999998 555 666555521 0368888876 56999999999999998753 455543
No 40
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=74.13 E-value=21 Score=27.04 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=39.3
Q ss_pred EEEEEEEEccCceEEEEeecce-eeEEEeec-CCCCCCCEEEEE--------------EeeecCCCCeEE
Q 034382 37 YRALVLRFIKDRTAALLLVEVG-LQATAWVS-VGAQIGDEVEVK--------------VEEAHPRDDIIY 90 (96)
Q Consensus 37 ~~AvVl~~~~~~~~~vlL~dl~-le~~~~~~-~~~~~Gd~v~v~--------------v~~vdP~~~~l~ 90 (96)
-+|.|+...+ +.+.|.-++=. +.+..+.. ..+..||.|.+. |.++.||.+.|.
T Consensus 48 ~~g~Vi~~~~-~~~~v~~~~g~~~~~~~r~~~~~~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R~~~l~ 116 (358)
T 2rcn_A 48 AEGIVISRFG-MHADVESADGEVHRCNIRRTIRSLVTGDRVVWRPGKAAAEGVNVKGIVEAVHERTSVLT 116 (358)
T ss_dssp EEEEEEEEET-TEEEEEETTSCEEEEEECTTCCCCCBTCEEEEECBC-------CCEEEEEECCCSCEEE
T ss_pred ceEEEEEEEC-CEEEEEeCCCcEEEEEecCCCCCCCCCcEEEEEeCCCccccccccceEeEEeCCcCccc
Confidence 4799999999 99988765522 46666555 468899999984 566778877764
No 41
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=73.80 E-value=10 Score=25.36 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=38.1
Q ss_pred HHhhhCCCCCeEEEEEEEEccC--------ceEEEEeecceeeEEEe-----------e-cCCCCCCCEEEEEEeeecCC
Q 034382 26 EFLRRQPKERQYRALVLRFIKD--------RTAALLLVEVGLQATAW-----------V-SVGAQIGDEVEVKVEEAHPR 85 (96)
Q Consensus 26 ~YL~~~~~~~~~~AvVl~~~~~--------~~~~vlL~dl~le~~~~-----------~-~~~~~~Gd~v~v~v~~vdP~ 85 (96)
.|++.+. |+.++|.|..-.+- ..++|.+-++.=+.... . ..-+++||.|+|+|.++|+.
T Consensus 75 ~~~~~~~-Gev~~G~V~~v~~fG~fV~l~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~ 153 (172)
T 2c35_B 75 IVFRPFK-GEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVD 153 (172)
T ss_dssp EEECCCT-TCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEE
T ss_pred EEeeCCC-CCEEEEEEEEEeCCEEEEEECCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcC
Confidence 4667777 89999988764442 22444444443110100 0 12488999999999999986
Q ss_pred CC
Q 034382 86 DD 87 (96)
Q Consensus 86 ~~ 87 (96)
..
T Consensus 154 ~~ 155 (172)
T 2c35_B 154 KN 155 (172)
T ss_dssp TT
T ss_pred CC
Confidence 55
No 42
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=72.79 E-value=8.9 Score=24.76 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=34.8
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec------CCCCCCCEEEEEEeeec
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS------VGAQIGDEVEVKVEEAH 83 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~------~~~~~Gd~v~v~v~~vd 83 (96)
+-+..|.|++-++.+.+.|.+++ +-...++.+ ..+.+||.|.|.+..-|
T Consensus 31 ~~e~~G~Vi~~lgn~~y~V~~~d-G~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~ 85 (117)
T 2oqk_A 31 EGQEYGQVQRMLGNGRLDAYCFD-GQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQ 85 (117)
T ss_dssp TTEEEEEEEEEEETTEEEEEETT-SCEEEEECCHHHHHHSCCCTTCEEEEEECTTC
T ss_pred CCEEEEEEEEEcCCCEEEEEeCC-CCEEEEEEcCceecCCcCCCCCEEEEEEEcCC
Confidence 34568999999987899998887 444444444 34569999998765333
No 43
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=72.76 E-value=0.73 Score=38.56 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCCCeEEEEEEEEcc---------CceEEEEeecceeeEEEeecCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 31 QPKERQYRALVLRFIK---------DRTAALLLVEVGLQATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 31 ~~~~~~~~AvVl~~~~---------~~~~~vlL~dl~le~~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
+. |..++|.|.+-.. ...++|++-++.-+-.-....-+++||.|.|+|.++|+ ++.|+|.
T Consensus 636 ~v-G~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS 704 (726)
T 4aid_A 636 EV-GKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLS 704 (726)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cC-CcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEE
Confidence 44 8888888776433 12344444444432222223469999999999999999 6777664
No 44
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=71.51 E-value=29 Score=26.74 Aligned_cols=61 Identities=5% Similarity=-0.027 Sum_probs=42.4
Q ss_pred HHHHhhhCCCCCeEEEEEEE----EccCceEEEEeec--ceeeEEEeec-----CCCCCCCEEEEEEeeecCCC
Q 034382 24 IIEFLRRQPKERQYRALVLR----FIKDRTAALLLVE--VGLQATAWVS-----VGAQIGDEVEVKVEEAHPRD 86 (96)
Q Consensus 24 ~l~YL~~~~~~~~~~AvVl~----~~~~~~~~vlL~d--l~le~~~~~~-----~~~~~Gd~v~v~v~~vdP~~ 86 (96)
.+.-|..+. |..-.|.|.+ .-+ +.+.|-|-. -+.|.-++.+ ..+.+||+|.+-|.+|+.-.
T Consensus 122 i~~ef~~r~-GeIVtG~V~r~~~~v~~-~~v~VdLG~~~~k~EgiLP~~EqiP~E~~~~GDrVkvyV~~V~~~~ 193 (366)
T 1k0r_A 122 TYGEFSTRE-GEIVAGVIQRDSRANAR-GLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGA 193 (366)
T ss_dssp -----CCCT-TCEEEEEEECCHHHHHT-TCEEEEECCSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEECCS
T ss_pred HHHHHHhcC-CCEEEEEEEEccccccC-CeEEEEeCCCccceEEEEcHHHcCCCccCCCCCEEEEEEEEEecCC
Confidence 444455666 8899999999 555 655555532 1278888876 56899999999999999754
No 45
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=70.86 E-value=19 Score=26.53 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=37.6
Q ss_pred eEEEEEEEEccCceEEEEeec----ceeeEEEeec-----CCCCCCCEEEEE--------EeeecCCCCeE
Q 034382 36 QYRALVLRFIKDRTAALLLVE----VGLQATAWVS-----VGAQIGDEVEVK--------VEEAHPRDDII 89 (96)
Q Consensus 36 ~~~AvVl~~~~~~~~~vlL~d----l~le~~~~~~-----~~~~~Gd~v~v~--------v~~vdP~~~~l 89 (96)
.=+|.|+...+ +.+.|.-++ --+++.++.. ..+..||.|.+. |.++.||.+.+
T Consensus 10 ~~~g~vi~~~~-~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~~~~~~i~~i~~R~~~l 79 (307)
T 1t9h_A 10 MPEGKIIKALS-GFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAENDKEGYLMEIKERTNEL 79 (307)
T ss_dssp CCEEEEEEEET-TEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCTTSCEEEEEECCCSCEE
T ss_pred CCCeEEEEEEC-CEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEcCCCceEEEEEcchhhhh
Confidence 44899999999 999998764 2345555543 226689999995 66677777655
No 46
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=69.94 E-value=25 Score=24.55 Aligned_cols=58 Identities=19% Similarity=0.075 Sum_probs=42.1
Q ss_pred CCeEEEEEEEEccCceEEEEeecc-------eeeEEEeec-------------CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEV-------GLQATAWVS-------------VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl-------~le~~~~~~-------------~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|..-.|.|.+-.. ..+.|-|... +++.-++.+ .-+++||.|.++|.++|.-...+.|.
T Consensus 82 GDvV~G~V~~v~~-~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~LS 159 (209)
T 2nn6_I 82 GAIVTCKVSSINS-RFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLT 159 (209)
T ss_dssp TCEEEEEEEEECS-SEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEEEEEEC-ceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEEEE
Confidence 6788899999777 8888887532 444444321 22899999999999999876656553
No 47
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=68.85 E-value=7.5 Score=24.76 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=23.1
Q ss_pred EEeecCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 62 TAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 62 ~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
.+++..++.|||.+.+++.-..-+.+...++
T Consensus 94 ~~kf~~pV~pGd~l~~~~~v~~~~~~~~~~~ 124 (146)
T 3d6x_A 94 GAKFRNPVRPGDRLDYEMSVVKNRGNMWIFK 124 (146)
T ss_dssp EEEECSCCCTTCEEEEEEEEEEEETTEEEEE
T ss_pred eeEECcccCCCCEEEEEEEEEEeeCCEEEEE
Confidence 3666679999999998887776666666554
No 48
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=67.90 E-value=1.1 Score=37.45 Aligned_cols=58 Identities=26% Similarity=0.309 Sum_probs=0.0
Q ss_pred CCeEEEEEEEEcc---------CceEEEEeecceeeEEEeecCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIK---------DRTAALLLVEVGLQATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~---------~~~~~vlL~dl~le~~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|..++|.|.+-.. ...++|++-++.-+-.-....-+++||.|.|+|.++|+ ++.|.|.
T Consensus 628 G~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS 694 (723)
T 3cdi_A 628 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLS 694 (723)
T ss_dssp --------------------------------------------------------------------
T ss_pred CcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEE
Confidence 7888888776433 02333444444322111112458999999999999999 7777664
No 49
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=66.61 E-value=11 Score=26.17 Aligned_cols=61 Identities=7% Similarity=0.004 Sum_probs=38.3
Q ss_pred HHHHhhhCCCCCeEEEEEEEEccCce--------EEEEeecceee----------EEE--------e-ecCCCCCCCEEE
Q 034382 24 IIEFLRRQPKERQYRALVLRFIKDRT--------AALLLVEVGLQ----------ATA--------W-VSVGAQIGDEVE 76 (96)
Q Consensus 24 ~l~YL~~~~~~~~~~AvVl~~~~~~~--------~~vlL~dl~le----------~~~--------~-~~~~~~~Gd~v~ 76 (96)
+.+|++.+. |+.++|+|..-.+.+. ..+.+.++.=+ ... . ....+++||.|+
T Consensus 73 k~~~f~p~~-GEv~~G~Vs~vt~~GifV~lg~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~Vr 151 (203)
T 3ayh_B 73 RLIIFRPFR-GEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIR 151 (203)
T ss_dssp EEEEECCCT-TCEEEEEEEEEETTEEEEECSSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEE
T ss_pred EEEEEccCC-CCEEEEEEEEEeccEEEEEEeCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEE
Confidence 456888888 9999999988665311 12322222110 000 1 113489999999
Q ss_pred EEEeeecCC
Q 034382 77 VKVEEAHPR 85 (96)
Q Consensus 77 v~v~~vdP~ 85 (96)
+||.++|..
T Consensus 152 vrV~~v~~~ 160 (203)
T 3ayh_B 152 FQIESEDFV 160 (203)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEcc
Confidence 999999874
No 50
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex, gene regulation; HET: MLC; 3.10A {Bacillus subtilis} SCOP: d.38.1.5
Probab=66.36 E-value=11 Score=25.00 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=23.9
Q ss_pred eEEEeecCCCCCCCEEEEEEeee--cCCCCeEEE
Q 034382 60 QATAWVSVGAQIGDEVEVKVEEA--HPRDDIIYL 91 (96)
Q Consensus 60 e~~~~~~~~~~~Gd~v~v~v~~v--dP~~~~l~l 91 (96)
...+++..++.|||.|.++..-+ .++.+...+
T Consensus 100 ~~~i~F~rPV~~GD~L~a~a~v~~~~~~~~~~~v 133 (157)
T 2f3x_A 100 SADIRFTRQVKQGERVVAKAKVTAVEKEKGRTVV 133 (157)
T ss_dssp EEEEEECSCCBTTCEEEEEEEEEEEETGGGEEEE
T ss_pred EEEEEEeCCCCCCCEEEEEEEEEEEEccCCEEEE
Confidence 34566668999999999988777 777665544
No 51
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=65.69 E-value=33 Score=24.25 Aligned_cols=55 Identities=15% Similarity=-0.039 Sum_probs=41.4
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec---C------------CCCCCCEEEEEEeeecCCCCeEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS---V------------GAQIGDEVEVKVEEAHPRDDIIYL 91 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~---~------------~~~~Gd~v~v~v~~vdP~~~~l~l 91 (96)
|..-.|.|.+-.. ..+.|-|.+ .++.-++.+ . .+++||.|..+|.++|+. +.+.|
T Consensus 67 GDiV~G~V~~v~~-~~~~V~I~~-~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~-~~i~L 136 (235)
T 2z0s_A 67 GDVVIGLIQSVGI-MNWFVDINS-PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKT-RSPLL 136 (235)
T ss_dssp TCCEEEEEEEECS-SEEEEECSS-SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTT-SCEEE
T ss_pred CCEEEEEEEEEeC-CeEEEEeCC-CeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCC-CcEEE
Confidence 6677899999877 888888754 456666543 1 689999999999999974 34554
No 52
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=65.37 E-value=2 Score=27.00 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=41.3
Q ss_pred CCCeEEEEEEEEccCceEEEEeecceeeEEEeec--CC------CCCCCEEEEEEeeecCCCC
Q 034382 33 KERQYRALVLRFIKDRTAALLLVEVGLQATAWVS--VG------AQIGDEVEVKVEEAHPRDD 87 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~--~~------~~~Gd~v~v~v~~vdP~~~ 87 (96)
++.++.|.|++..+++.+.|.+.|+|-...++.+ .. --|.+.+..++..+.|..+
T Consensus 46 d~~wyRA~V~~~~~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~lP~qA~~c~L~~v~p~~~ 108 (110)
T 2diq_A 46 NGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIASGPS 108 (110)
T ss_dssp TCSCEEEEECCCCSSSCEEEEETTTCCEEEECGGGCEECCHHHHSSCCSSCCSCSSCSCCSCC
T ss_pred CCeEEEEEEEEECCCCeEEEEEEeCCCeEEEehHHhhcCcHHHhCCCcceEEEEECCeEECCC
Confidence 3689999999876557899999999999998775 11 2366777777777766543
No 53
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=64.49 E-value=13 Score=24.69 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=18.4
Q ss_pred EEeecCCCCCCCEEEEEEe--eecCCC
Q 034382 62 TAWVSVGAQIGDEVEVKVE--EAHPRD 86 (96)
Q Consensus 62 ~~~~~~~~~~Gd~v~v~v~--~vdP~~ 86 (96)
.+++..++.|||.|.+++. ++++..
T Consensus 109 ~~rF~~PV~~GDtl~~~~~V~~~~~~~ 135 (159)
T 3k67_A 109 SFRYTSPVRIGDVVRVEGVVSGVEKNR 135 (159)
T ss_dssp EEEECSCCCTTCEEEEEEEEEEEETTE
T ss_pred eeEEcCCcCCCCEEEEEEEEEEEECCE
Confidence 5677789999999988754 555543
No 54
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=64.15 E-value=10 Score=25.22 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=22.4
Q ss_pred EEeecCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 62 TAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 62 ~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
.+++..++.|||++.+++.-..-+.+...+.
T Consensus 114 ~vrF~~pV~pGD~L~~~v~v~~~~~g~~~~~ 144 (168)
T 1u1z_A 114 KLRFRQPVLPGDQLQLHAKFISVKRSIWKFD 144 (168)
T ss_dssp EEEECSCCCTTCEEEEEEEEEEEETTEEEEE
T ss_pred EEEECCcCCCCCEEEEEEEEEEEeCCEEEEE
Confidence 3677789999999988876665555655543
No 55
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=63.67 E-value=13 Score=22.36 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=28.9
Q ss_pred CCCeEEEEEEEEccCceEEEEeecceeeEEEeec
Q 034382 33 KERQYRALVLRFIKDRTAALLLVEVGLQATAWVS 66 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~ 66 (96)
+|.++.|.|++..+.+.+.|.+.|+|-.-.++.+
T Consensus 41 d~~wyRA~I~~~~~~~~~~V~fvDyGn~e~v~~~ 74 (94)
T 3fdr_A 41 NGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLK 74 (94)
T ss_dssp TTEEEEEEEEEECTTSCEEEEETTTCCEEEECGG
T ss_pred CCeEEEEEEEEECCCCeEEEEEEcCCCeEEEEHH
Confidence 4789999999986536899999999999888876
No 56
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=63.23 E-value=13 Score=24.92 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=22.7
Q ss_pred EeecCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 63 AWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 63 ~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
+++..++.|||.+.+++.-..-+.+...++
T Consensus 119 vkF~~pV~PGD~L~i~v~v~~~~~~~~~~~ 148 (171)
T 2gll_A 119 VKFRIPVTPGDRLEYHLEVLKHKGMIWQVG 148 (171)
T ss_dssp EEECSCCCTTCEEEEEEEEEEESSSEEEEE
T ss_pred EEECCccCCCCEEEEEEEEEEEeCCEEEEE
Confidence 566679999999999887776566666554
No 57
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=62.54 E-value=23 Score=21.53 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=22.1
Q ss_pred eEEEeecCCCCCCCEEEEEEe--eecCCCCeEEEE
Q 034382 60 QATAWVSVGAQIGDEVEVKVE--EAHPRDDIIYLK 92 (96)
Q Consensus 60 e~~~~~~~~~~~Gd~v~v~v~--~vdP~~~~l~l~ 92 (96)
...+++..++.|||.|.++.. ++++..+.+.++
T Consensus 79 ~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~v~~~ 113 (134)
T 1iq6_A 79 GQSLSFKLPVFVGDEVTAEVEVTALREDKPIATLT 113 (134)
T ss_dssp EEEEEECSCCBTTCEEEEEEEEEEECSSSSEEEEE
T ss_pred EEEEEEcCCCCCCCEEEEEEEEEEEECCCCEEEEE
Confidence 345667789999999988754 455545555543
No 58
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=61.21 E-value=1.7 Score=37.69 Aligned_cols=57 Identities=12% Similarity=-0.027 Sum_probs=0.0
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec------------CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS------------VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~------------~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|...+|.|..-.. ..+-|-| +.|++.-++.+ .-+++||.|.|+|.+||+.+..|.|.
T Consensus 906 G~iv~G~V~~V~~-fGaFV~L-~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LS 974 (1030)
T 3psf_A 906 GSIIPVRVERFWH-NDIICTT-NSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVS 974 (1030)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCEEEEEEEEEcc-CeEEEEe-CCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEE
Confidence 7788888776443 3333333 34444433332 34899999999999999988887764
No 59
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=60.78 E-value=19 Score=19.95 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=28.8
Q ss_pred CCCeEEEEEEEEccC-ceEEEEeecceeeEEEeec
Q 034382 33 KERQYRALVLRFIKD-RTAALLLVEVGLQATAWVS 66 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~-~~~~vlL~dl~le~~~~~~ 66 (96)
+|.+++|.|++-..+ +.+.|...|+|=.-.++.+
T Consensus 17 Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~ 51 (59)
T 1mhn_A 17 DGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS 51 (59)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHH
Confidence 478999999997653 8999999999988888776
No 60
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=60.72 E-value=13 Score=24.88 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=23.6
Q ss_pred EeecCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 63 AWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 63 ~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
+++..++.|||.+.+.+.-..-+.+...+.
T Consensus 105 ~kF~~~V~PGd~L~i~v~~~~~~~~~~~~~ 134 (160)
T 4h4g_A 105 ARFKRVVEPGDQLILNVTFERYIRGIWKFK 134 (160)
T ss_dssp EEECSCCCTTCEEEEEEEEEEEETTEEEEE
T ss_pred EEECcccCCCCEEEEEEEEEEeeCCEEEEE
Confidence 566689999999999988777666666554
No 61
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=59.67 E-value=25 Score=20.97 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=28.2
Q ss_pred EEEEEEEccCceEEEEeecceeeEEEeecCCCCCCCEEEEE
Q 034382 38 RALVLRFIKDRTAALLLVEVGLQATAWVSVGAQIGDEVEVK 78 (96)
Q Consensus 38 ~AvVl~~~~~~~~~vlL~dl~le~~~~~~~~~~~Gd~v~v~ 78 (96)
.|+|++.+. +.+.|.+.+- ..++.+...+++|+.|.|.
T Consensus 20 ~g~v~~~i~-~~G~V~i~Ge--~W~A~s~~~i~~G~~V~Vv 57 (80)
T 2exd_A 20 VGKVVKIAE-DHYLVEVEGD--KWIAYSDEKLSLGDRVMVV 57 (80)
T ss_dssp EEEEEECCT-TCEEEEETTE--EEEECCSSCCCTTCEEEEE
T ss_pred EEEEeEecC-CCEEEEECCE--EEEEEECCccCCCCEEEEE
Confidence 488888888 5788888754 4445556789999998763
No 62
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=57.52 E-value=25 Score=27.82 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=45.0
Q ss_pred CCCeEEEEEEEEccCceEEEEeecceeeEEEeec------CCC--C--CCCEEEEEEeeecCCC
Q 034382 33 KERQYRALVLRFIKDRTAALLLVEVGLQATAWVS------VGA--Q--IGDEVEVKVEEAHPRD 86 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~------~~~--~--~Gd~v~v~v~~vdP~~ 86 (96)
+|.++.|.|++...++.+.|.+.|+|-...++.+ ..+ - |.+.+..++..+.|..
T Consensus 424 d~~wyRa~I~~v~~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~ 487 (570)
T 3bdl_A 424 DGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ 487 (570)
T ss_dssp TSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCS
T ss_pred CCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEECCeEcCC
Confidence 4789999999877668999999999999998776 222 2 8999999999998765
No 63
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=56.98 E-value=18 Score=26.72 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=43.0
Q ss_pred hHHHHHHhhhccccchHHHHhhhCC-CCCeEEEEEEEEccCceEEEEeecceeeEEEeecCCCC--CCCEEEEEEeee
Q 034382 8 QTRIARRLSNTSLRYWIIEFLRRQP-KERQYRALVLRFIKDRTAALLLVEVGLQATAWVSVGAQ--IGDEVEVKVEEA 82 (96)
Q Consensus 8 ~~~~a~~ieR~s~RyW~l~YL~~~~-~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~~~~~--~Gd~v~v~v~~v 82 (96)
.++-|+.+-..+--|.. +.++ .+.-=+|+|+++.+ +. .+-++|+.-.+..+ +. +|.+|+|++..-
T Consensus 80 ~Lk~aGlLPpL~~phH~----~~~~~~~~yREGvv~~~~~-~~---~~VdiGl~~~v~~~--~p~~~g~RVTV~~~~~ 147 (268)
T 1k3r_A 80 ELKHVGILPPLRTPHHP----TGKPVTGEYRQGLTVKRVK-KG---TLVDIGADKLALCR--EKLTVNRIMSFRVVRL 147 (268)
T ss_dssp GGGGGGGCCCCCCTTSC----CSSCCTTCEEEEEEEEECS-SS---EEEESSSSCEEECS--SCCCSSCEEEEEEEEC
T ss_pred CcceecCcCCCCCCCCC----CCCCCccceEEEEEEEecC-Cc---eEEEeCCCceEEEe--cCCCCCcEEEEEecCC
Confidence 34445555555555552 2212 14455799999855 33 56678998888886 66 999999999765
No 64
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=56.14 E-value=15 Score=23.85 Aligned_cols=30 Identities=23% Similarity=0.175 Sum_probs=22.4
Q ss_pred EeecCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 63 AWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 63 ~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
+++..++.|||.+.+++.-..-+.+...+.
T Consensus 101 vkF~~pV~PGd~L~i~~~v~~~~~~~~~~~ 130 (152)
T 4i83_A 101 ARFKRQVIPGDQLVFEVELLTSRRGIGKFN 130 (152)
T ss_dssp EEECSCCCTTCEEEEEEEEEEEETTEEEEE
T ss_pred EEEccccCCCCEEEEEEEEEEeeCCEEEEE
Confidence 566678999999999888666556655554
No 65
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=55.84 E-value=41 Score=22.98 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=36.3
Q ss_pred hhhCCCCCeEEEEEEEEc-----cCceEEEEeecceeeEEEeec----CCCCCCCEEEEE
Q 034382 28 LRRQPKERQYRALVLRFI-----KDRTAALLLVEVGLQATAWVS----VGAQIGDEVEVK 78 (96)
Q Consensus 28 L~~~~~~~~~~AvVl~~~-----~~~~~~vlL~dl~le~~~~~~----~~~~~Gd~v~v~ 78 (96)
+.-+| .--++|.++... ...+++|.++|-... .+..+ -.+..||.|.|-
T Consensus 16 f~G~p-~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~~-~V~~~~vk~LeLRiGD~VKVd 73 (153)
T 2fhd_A 16 FKGYP-SFYYPATLVAPVHSAVTSSIMYKVQFDDATMS-TVNSNQIKRFFLKKGDVVQST 73 (153)
T ss_dssp CCSSS-CCEEEEEEEEEECCSSCCBCEEEEEETTSCEE-EEETTSEEESCCCTTCEEEET
T ss_pred cCCCc-ccccceEEEccCCCcccCCeEEEEEEcCCCCC-ccChhhceeeeeecCCEEEEC
Confidence 33455 568999999877 227999999998555 44443 679999998774
No 66
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=54.09 E-value=18 Score=23.32 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=19.6
Q ss_pred EeecCCCCCCCEEEEEEee--ecCCCCeEEEE
Q 034382 63 AWVSVGAQIGDEVEVKVEE--AHPRDDIIYLK 92 (96)
Q Consensus 63 ~~~~~~~~~Gd~v~v~v~~--vdP~~~~l~l~ 92 (96)
+++..++.|||++.+++.- .++..+...+.
T Consensus 101 ~rF~~pV~pGd~l~~~~~v~~~~~~~g~~~~~ 132 (154)
T 1z6b_A 101 VRWKKPVLPGDTLTMQANLISFKSSLGIAKLS 132 (154)
T ss_dssp EEECSCCCTTCEEEEEEEEEEEETTTTEEEEE
T ss_pred eEEccccCCCCEEEEEEEEEEeeCCceEEEEE
Confidence 6666899999998876554 44433334443
No 67
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=54.00 E-value=25 Score=19.05 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=26.4
Q ss_pred CCCeEEEEEEEEccC-ceEEEEeecceeeEEEeec
Q 034382 33 KERQYRALVLRFIKD-RTAALLLVEVGLQATAWVS 66 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~-~~~~vlL~dl~le~~~~~~ 66 (96)
+|.+++|.|++-.++ +.+.|...|+|=.-.++.+
T Consensus 15 Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~ 49 (54)
T 3s6w_A 15 DNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 49 (54)
T ss_dssp TTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGG
T ss_pred CCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHH
Confidence 478999999986543 6899999999988777664
No 68
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=52.87 E-value=33 Score=20.20 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=29.3
Q ss_pred CCCeEEEEEEEEccC-ceEEEEeecceeeEEEeec
Q 034382 33 KERQYRALVLRFIKD-RTAALLLVEVGLQATAWVS 66 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~-~~~~vlL~dl~le~~~~~~ 66 (96)
++.++.|.|++...+ +.+.|...|+|=.-.++.+
T Consensus 23 Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~ 57 (78)
T 2d9t_A 23 DNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS 57 (78)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG
T ss_pred CCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHH
Confidence 478999999997753 7899999999999888876
No 69
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=52.48 E-value=32 Score=20.80 Aligned_cols=43 Identities=9% Similarity=-0.011 Sum_probs=28.7
Q ss_pred eEEEEEEEEccCceEEEE-eecceeeEEEeec---CCCCCCCEEEEE
Q 034382 36 QYRALVLRFIKDRTAALL-LVEVGLQATAWVS---VGAQIGDEVEVK 78 (96)
Q Consensus 36 ~~~AvVl~~~~~~~~~vl-L~dl~le~~~~~~---~~~~~Gd~v~v~ 78 (96)
..=|.|++..+++.+.|- -.+--+-+.+... ..++||++|.+.
T Consensus 19 ~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn 65 (85)
T 3h43_A 19 LIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLN 65 (85)
T ss_dssp EEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEEC
T ss_pred ceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEEC
Confidence 567999998887777665 3333333333332 679999999864
No 70
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=52.22 E-value=1.2 Score=37.40 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=25.6
Q ss_pred CCeEEEEEEEEccCceEEEEe----------ecc---eeeEEEee-cCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLL----------VEV---GLQATAWV-SVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL----------~dl---~le~~~~~-~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|..++|.|.+-.. --+-|.| -++ +-.-.+.. ..-+++||.|.|+|..+|+ ++.|.|.
T Consensus 668 G~i~~G~V~~i~~-fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS 738 (757)
T 1e3p_A 668 GERILGSVVKTTT-FGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLI 738 (757)
T ss_dssp -----CBEEECC--CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-SCC----
T ss_pred ccEEEEEEEEccc-cEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCEEEE
Confidence 7889988887443 3333333 333 01111211 2458999999999999999 8887764
No 71
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=52.18 E-value=7.5 Score=26.29 Aligned_cols=64 Identities=14% Similarity=-0.000 Sum_probs=38.0
Q ss_pred HHHhhhCCCCCeEEEEEEEEccC--------ceEEEEeecce----eeE-----EEee-cCCCCCCCEEEEEEeeecCCC
Q 034382 25 IEFLRRQPKERQYRALVLRFIKD--------RTAALLLVEVG----LQA-----TAWV-SVGAQIGDEVEVKVEEAHPRD 86 (96)
Q Consensus 25 l~YL~~~~~~~~~~AvVl~~~~~--------~~~~vlL~dl~----le~-----~~~~-~~~~~~Gd~v~v~v~~vdP~~ 86 (96)
..+++.+. |+.++|.|..-.+- -.+.|.+-++. .+- .+.. +..+++||.|++||..+|+..
T Consensus 77 ~ivf~p~~-Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~ 155 (172)
T 3h0g_G 77 AVLWRPFR-GEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDA 155 (172)
T ss_dssp EEEECCCT-TCEEECCCCEEETTEEECCBTTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESS
T ss_pred EeeeccCC-CCEEEEEEEEEEcceEEEEeCCeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCC
Confidence 34566666 78888776654431 11334443332 000 1111 145899999999999999987
Q ss_pred CeE
Q 034382 87 DII 89 (96)
Q Consensus 87 ~~l 89 (96)
..+
T Consensus 156 ~~~ 158 (172)
T 3h0g_G 156 TEI 158 (172)
T ss_dssp SCE
T ss_pred CCc
Confidence 654
No 72
>2b3n_A Hypothetical protein AF1124; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A 3k67_A
Probab=51.24 E-value=30 Score=22.71 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=22.6
Q ss_pred EEEeecCCCCCCCEEEEEEeeecCCCCeEEE
Q 034382 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYL 91 (96)
Q Consensus 61 ~~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l 91 (96)
..+++..++.|||.|.+++.-.+-..+.+.+
T Consensus 108 ~~~rF~~PV~~GD~L~~~~~v~~~~~~~v~~ 138 (159)
T 2b3n_A 108 QSFRYTSPVRIGDVVRVEGVVSGVEKNRYTI 138 (159)
T ss_dssp EEEEECSCCCTTCEEEEEEEEEEEETTEEEE
T ss_pred eeeEECCCcCCCCEEEEEEEEEEEcCCEEEE
Confidence 4567778999999999988766544555444
No 73
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=50.77 E-value=66 Score=23.04 Aligned_cols=55 Identities=16% Similarity=-0.055 Sum_probs=40.3
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec--------------CCCCCCCEEEEEEeeecCCCCeEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS--------------VGAQIGDEVEVKVEEAHPRDDIIYL 91 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~--------------~~~~~Gd~v~v~v~~vdP~~~~l~l 91 (96)
|..-.|.|.+-.. ..+.|-|.+ .++.-++.+ ..+++||.|..+|.++|+. +.+.|
T Consensus 75 GDiV~G~V~~v~~-~ga~VdI~~-~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~-~~i~L 143 (251)
T 2je6_I 75 NDIVIGLVEDVEI-YGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRS-IDPVL 143 (251)
T ss_dssp TCEEEEEEEEECS-SEEEEECSS-SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETT-EEEEE
T ss_pred CCEEEEEEEEEeC-ceEEEEcCC-CeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCC-CcEEE
Confidence 6677899999777 788887754 445555432 2689999999999999964 34544
No 74
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=50.70 E-value=40 Score=20.58 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=32.8
Q ss_pred HhhhCCC-CCeEEEEEEEEccCceEEEEeec-ceeeEEEee-----------------cCCCCCCCEEEEEE
Q 034382 27 FLRRQPK-ERQYRALVLRFIKDRTAALLLVE-VGLQATAWV-----------------SVGAQIGDEVEVKV 79 (96)
Q Consensus 27 YL~~~~~-~~~~~AvVl~~~~~~~~~vlL~d-l~le~~~~~-----------------~~~~~~Gd~v~v~v 79 (96)
+|...++ +...+|+|++--+ +.+.|.+.+ -... ++. +.-+++||.|.|+-
T Consensus 26 ~l~~~~~~~~~~~AvV~~v~~-~~~~v~~~~g~~~~--l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~~ 94 (106)
T 3d0f_A 26 IMQDIGNSDDILAAVVLSATP-GAVEAFRKNGETIR--ITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVKK 94 (106)
T ss_dssp HTTTSCTTTTCEEEEEEEEET-TEEEEEETTSCEEE--ECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEEE
T ss_pred HhhccCccCCeEEEEEEEeCC-CeEEEEEcCCCeEE--EcHHHChhhhhcccccccchhccCCCCCEEEEEE
Confidence 4555443 4567899999777 888888854 2211 221 12389999999983
No 75
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=50.39 E-value=26 Score=22.56 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=18.2
Q ss_pred eeeEEEeecCCCCCCCEEEEEEeee
Q 034382 58 GLQATAWVSVGAQIGDEVEVKVEEA 82 (96)
Q Consensus 58 ~le~~~~~~~~~~~Gd~v~v~v~~v 82 (96)
+++..+++..++.|||.|.+++.-.
T Consensus 81 ~~~~~~rF~~PV~~GD~L~~~~~v~ 105 (154)
T 3exz_A 81 GAGTELSWPNPTRPGDELHVETTVL 105 (154)
T ss_dssp EEEEEEECSSCCCTTCEEEEEEEEE
T ss_pred cceeEEEEcCCCCCCCEEEEEEEEE
Confidence 3444677778999999987766543
No 76
>3ir3_A HTD2, 3-hydroxyacyl-thioester dehydratase 2; structural GENO structural genomics consortium, SGC, lyase; 1.99A {Homo sapiens}
Probab=50.34 E-value=25 Score=22.51 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=20.8
Q ss_pred eEEEeecCCCCCCCEEEEEE--eeecCCCCeEEE
Q 034382 60 QATAWVSVGAQIGDEVEVKV--EEAHPRDDIIYL 91 (96)
Q Consensus 60 e~~~~~~~~~~~Gd~v~v~v--~~vdP~~~~l~l 91 (96)
...+++..++.|||.+.++. .++.+..+.+.+
T Consensus 89 ~~~~rf~~PV~~Gd~l~~~~~v~~~~~~~~~v~~ 122 (148)
T 3ir3_A 89 SQEISFPAPLYIGEVVLASAEVKKLKRFIAIIAV 122 (148)
T ss_dssp EEEEECCSCCBTTCEEEEEEEEEEEETTEEEEEE
T ss_pred EEEEEECCCcCCCCEEEEEEEEEEEcCCeEEEEE
Confidence 34567778999999998854 455543334443
No 77
>3bnv_A CJ0977; virulence factor, hot-DOG fold, flagel unknown function; HET: MSE; 2.60A {Campylobacter jejuni}
Probab=50.14 E-value=44 Score=21.64 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=22.1
Q ss_pred eeEEEeecCCCCCCCEEEEEEeeecCC-CCeE
Q 034382 59 LQATAWVSVGAQIGDEVEVKVEEAHPR-DDII 89 (96)
Q Consensus 59 le~~~~~~~~~~~Gd~v~v~v~~vdP~-~~~l 89 (96)
....+++-.++.|||.|.++..-+... .+..
T Consensus 90 ~~~~i~F~~PV~~GD~L~a~a~v~~~~~~~~~ 121 (152)
T 3bnv_A 90 IGSKCFFYAPLKLGDVLELEAHALFDETSKKR 121 (152)
T ss_dssp EEEEEEECSCCBTTCEEEEEEEECCCSSCSEE
T ss_pred EEEEEEEeCCCCCCCEEEEEEEEEEEcCCcEE
Confidence 334466667999999999988777765 4443
No 78
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=49.45 E-value=15 Score=25.35 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=28.2
Q ss_pred eecceeeEEEeecCCCCCCCEEEEEEeeecCCCCeEEEEE
Q 034382 54 LVEVGLQATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 93 (96)
Q Consensus 54 L~dl~le~~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~e 93 (96)
.|+.+.+.. +-++.|||.|.+.|...++-.+.+.++-
T Consensus 45 ~P~~a~~~~---~~~v~~GD~i~~tV~~~s~~~g~~tleN 81 (173)
T 1y43_B 45 YPDYAYDFS---DITISEGDSIKVTVEATSKSSGSATVEN 81 (173)
T ss_dssp ETSCCEEET---TCCCCTTCEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCccccc---cceeCCCCEEEEEEEEcCCCcEEEEEEE
Confidence 466655432 3579999999999999999888887764
No 79
>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1
Probab=48.74 E-value=21 Score=26.68 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=17.6
Q ss_pred CCCCCCCEEEEEEeeecCC
Q 034382 67 VGAQIGDEVEVKVEEAHPR 85 (96)
Q Consensus 67 ~~~~~Gd~v~v~v~~vdP~ 85 (96)
...+|||.+.|+|.++.|.
T Consensus 71 eGAePGD~L~V~I~~i~~~ 89 (297)
T 2f4l_A 71 NGVKPGDTLKVRIKRIELP 89 (297)
T ss_dssp TTCCTTCEEEEEEEEEECC
T ss_pred cCCCCCCEEEEEEEEeeec
Confidence 7899999999999999983
No 80
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=48.46 E-value=16 Score=20.76 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=28.1
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeecCCCCCCCEEEEEEeeecCCCC
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVSVGAQIGDEVEVKVEEAHPRDD 87 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~~~~~~Gd~v~v~v~~vdP~~~ 87 (96)
++..+..|-+---++.+...+.+.-+. + ...-|||.+.+++.++...-.
T Consensus 14 ~~~~~~~I~~l~~~G~Gva~~~g~~vf--V---~~alPGE~V~v~i~k~kk~~~ 62 (68)
T 1yez_A 14 GEVYDVTIQDIARQGDGIARIEGFVIF--V---PGTKVGDEVRIKVERVLPKFA 62 (68)
T ss_dssp TEEEEEECCEEETTTEEEEEETTEEEE--E---ESCCTTCEEEEEEEEECSSCE
T ss_pred CCEEEEEEEEcCCCccEEEEECCEEEE--C---cCCCCCCEEEEEEEEecCCEE
Confidence 445554444332225555555543222 2 246799999999999876544
No 81
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=47.99 E-value=41 Score=19.84 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=28.6
Q ss_pred CCCeEEEEEEEEccC-ceEEEEeecceeeEEEeec
Q 034382 33 KERQYRALVLRFIKD-RTAALLLVEVGLQATAWVS 66 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~-~~~~vlL~dl~le~~~~~~ 66 (96)
+|.++.|.|++..+. +.+.|..-|+|-.-.++.+
T Consensus 31 Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~ 65 (77)
T 3pnw_C 31 DNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 65 (77)
T ss_dssp TTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGG
T ss_pred CCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHH
Confidence 478999999997653 6899999999998888776
No 82
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=47.87 E-value=32 Score=18.56 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=29.9
Q ss_pred CeEEEEEEEEccC-ceEEEEe--ecceeeEEEeec----CCCCCCCEEEEEEeeec
Q 034382 35 RQYRALVLRFIKD-RTAALLL--VEVGLQATAWVS----VGAQIGDEVEVKVEEAH 83 (96)
Q Consensus 35 ~~~~AvVl~~~~~-~~~~vlL--~dl~le~~~~~~----~~~~~Gd~v~v~v~~vd 83 (96)
..++|.|.+-... ..+.|.+ .+-.+...+... .+++||+.+.+.+...+
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s~~~l~L~~G~~V~~~ika~~ 62 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVKATE 62 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHHHHHTCCTTCEEEEEECGGG
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHHHHhCCCCCCCEEEEEEecce
Confidence 3688888865432 3444444 343344444432 47999999999986543
No 83
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=45.95 E-value=21 Score=24.32 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=20.6
Q ss_pred cCCCCCCCEEEEEEeeecC-CCCeEEE
Q 034382 66 SVGAQIGDEVEVKVEEAHP-RDDIIYL 91 (96)
Q Consensus 66 ~~~~~~Gd~v~v~v~~vdP-~~~~l~l 91 (96)
++++.+|+.+.|+|.++++ ..+.|++
T Consensus 42 ~RPl~~~E~~~v~I~~~~~~wsG~l~~ 68 (168)
T 2yue_A 42 ARPVRINERICVKFAEISNNWNGGIRF 68 (168)
T ss_dssp SSCCCSSCCEEEEEEECCSSSSSCCEE
T ss_pred CCCCcCCCEEEEEEEeecCCcceeEEE
Confidence 4899999999999998765 5566654
No 84
>4ffu_A Oxidase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc, PS biology; HET: MSE; 1.80A {Sinorhizobium meliloti}
Probab=45.64 E-value=39 Score=22.52 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=16.6
Q ss_pred EEeecCCCCCCCEEEEEEeee
Q 034382 62 TAWVSVGAQIGDEVEVKVEEA 82 (96)
Q Consensus 62 ~~~~~~~~~~Gd~v~v~v~~v 82 (96)
.+++..++.|||.|.+++.-+
T Consensus 110 ~~rF~~PV~~GDtL~~~~~v~ 130 (176)
T 4ffu_A 110 RLRFVRPVHIGDTIRTRVTIA 130 (176)
T ss_dssp EEEECSCCCTTCEEEEEEEEE
T ss_pred eEEEcCCccCCCEEEEEEEEE
Confidence 567778999999998876543
No 85
>2ifr_A Scytalidopepsin B; enzyme-transition state analog complex, hydrolase-hydrolase complex; HET: TA2; 1.95A {Scytalidium lignicola} SCOP: b.29.1.20 PDB: 1s2b_A* 1s2k_A* 2ifw_A*
Probab=44.92 E-value=27 Score=24.78 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=27.1
Q ss_pred eecceeeEEEeecCCCCCCCEEEEEEeeecCCCCeEEEEE
Q 034382 54 LVEVGLQATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 93 (96)
Q Consensus 54 L~dl~le~~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~e 93 (96)
.|+.+.+.. +-++.|||.|.+.|...++-.+.+.|+-
T Consensus 71 ~P~~a~~~s---~~~vs~GD~i~~tV~~~s~t~g~~tleN 107 (206)
T 2ifr_A 71 YPEVSDDFS---GITISEGDSIQMSVTATSDTSGSATLEN 107 (206)
T ss_dssp ESSCEEEC-----CCCCTTCEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCccccc---cceeCCCCEEEEEEEEcCCCcEEEEEEE
Confidence 355444332 2469999999999999998888887764
No 86
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=44.34 E-value=54 Score=20.19 Aligned_cols=33 Identities=27% Similarity=0.191 Sum_probs=27.7
Q ss_pred CCCeEEEEEEEEccCceEEEEeecceeeEEEeec
Q 034382 33 KERQYRALVLRFIKDRTAALLLVEVGLQATAWVS 66 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~ 66 (96)
+++.|+|.|..-.+++.++|.+.| |..-.++..
T Consensus 34 D~~yYPAkI~sV~~~~~YtV~F~D-G~~etvk~~ 66 (85)
T 3qii_A 34 DCRFYPAKVTAVNKDGTYTVKFYD-GVVQTVKHI 66 (85)
T ss_dssp TSCEEEEEEEEECTTSEEEEEETT-SCEEEEEGG
T ss_pred CCCEeeEEEEEECCCCeEEEEEeC-CCeEEecHH
Confidence 478999999998887889999998 777777665
No 87
>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT}
Probab=42.88 E-value=24 Score=28.18 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=18.4
Q ss_pred CCCCCCCEEEEEEeeecCCC
Q 034382 67 VGAQIGDEVEVKVEEAHPRD 86 (96)
Q Consensus 67 ~~~~~Gd~v~v~v~~vdP~~ 86 (96)
...+|||.|.|+|.++.|+.
T Consensus 170 eGAEPGDvL~V~IldI~p~~ 189 (484)
T 3b9t_A 170 KGAEPGDVLEVRIVDVALRP 189 (484)
T ss_dssp TTCCTTCEEEEEEEEEEECC
T ss_pred cCCCCCCEEEEEEEEEEecC
Confidence 78999999999999999963
No 88
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Methanothermobacterthermautotrophicus str}
Probab=42.52 E-value=59 Score=20.10 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=28.5
Q ss_pred EEEEEEEcc-CceEEEEeecceeeEEEeecCCCCCCCEEEEE
Q 034382 38 RALVLRFIK-DRTAALLLVEVGLQATAWVSVGAQIGDEVEVK 78 (96)
Q Consensus 38 ~AvVl~~~~-~~~~~vlL~dl~le~~~~~~~~~~~Gd~v~v~ 78 (96)
.|.|++++. ++.+.|.+.+---. +.++..+++|+.|.|.
T Consensus 44 ~g~V~~~i~~~g~G~V~i~Ge~W~--A~s~~~i~~G~~V~Vv 83 (101)
T 2k5h_A 44 KGVVMEAISPQNSGLVKVDGETWR--ATSGTVLDVGEEVSVK 83 (101)
T ss_dssp EEEEEECBCSSSCEEEEETTEEEE--EECSSCBCTTCEEEEE
T ss_pred EEEEeEEccCCCeEEEEECCEEEE--EEeCCcCCCCCEEEEE
Confidence 488899886 35788888765444 4556789999998763
No 89
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}
Probab=42.20 E-value=22 Score=26.56 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=17.3
Q ss_pred CCCCCCCEEEEEEeeecCC
Q 034382 67 VGAQIGDEVEVKVEEAHPR 85 (96)
Q Consensus 67 ~~~~~Gd~v~v~v~~vdP~ 85 (96)
...+|||.+.|+|.++.|.
T Consensus 67 eGAePGD~L~V~I~~i~~~ 85 (301)
T 2ii1_A 67 EGARRGDMLEIEILDIKVG 85 (301)
T ss_dssp ETCCTTCEEEEEEEEEEEC
T ss_pred cCCCCCCEEEEEEEEEeec
Confidence 6799999999999999983
No 90
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=41.88 E-value=58 Score=19.84 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=29.7
Q ss_pred CCCeEEEEEEEEccC-ceEEEEeecceeeEEEeec
Q 034382 33 KERQYRALVLRFIKD-RTAALLLVEVGLQATAWVS 66 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~-~~~~vlL~dl~le~~~~~~ 66 (96)
+|.+++|.|.....+ +.+.|.+.|+|=.-.++..
T Consensus 24 Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~ 58 (88)
T 1g5v_A 24 DGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS 58 (88)
T ss_dssp TCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGG
T ss_pred CCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHH
Confidence 578999999997753 8999999999999888886
No 91
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.85 E-value=25 Score=23.95 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=20.4
Q ss_pred cCCCCCCCEEEEEEeeec-CCCCeEEE
Q 034382 66 SVGAQIGDEVEVKVEEAH-PRDDIIYL 91 (96)
Q Consensus 66 ~~~~~~Gd~v~v~v~~vd-P~~~~l~l 91 (96)
++++.+||.+.|+|.+.+ ...+.|++
T Consensus 43 ~rPl~~~E~~~v~I~~~~~~wsG~l~~ 69 (170)
T 2e63_A 43 REPLRDGRVFTVRIDRKVNSWSGSIEI 69 (170)
T ss_dssp EEEECTTCEEEEEEEEECCSSCCCCEE
T ss_pred CCCCCCCCEEEEEEEeecCCcceeEEE
Confidence 368999999999998764 46666665
No 92
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=41.12 E-value=41 Score=20.74 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=31.3
Q ss_pred eEEEEeecc--eeeEEEeecCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 49 TAALLLVEV--GLQATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 49 ~~~vlL~dl--~le~~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
...+.|-|- .+.+.++-+. +++||.|.++=+.++-.+|.++|.
T Consensus 39 v~~~~l~DeTG~I~~tlW~~~-l~~Gdvv~i~ng~v~~~~g~~~L~ 83 (106)
T 2k75_A 39 VYQGYIEDDTARIRISSFGKQ-LQDSDVVRIDNARVAQFNGYLSLS 83 (106)
T ss_dssp EEEEEEECSSCEEEEEEESSC-CCTTEEEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEcCCCeEEEEEEcCc-cCCCCEEEEEeeEEeEECCEEEEE
Confidence 445666655 2444444445 999999999999999988888764
No 93
>1q6w_A Monoamine oxidase regulatory protein, putative; structural genomics, nysgxrc T805, hot DOG fold; 2.81A {Archaeoglobus fulgidus} SCOP: d.38.1.4
Probab=40.82 E-value=33 Score=21.92 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=16.5
Q ss_pred EEEeecCCCCCCCEEEEEEeee
Q 034382 61 ATAWVSVGAQIGDEVEVKVEEA 82 (96)
Q Consensus 61 ~~~~~~~~~~~Gd~v~v~v~~v 82 (96)
..+++..++.|||.|.++..-+
T Consensus 99 ~~~rF~~PV~~Gd~l~~~~~v~ 120 (161)
T 1q6w_A 99 KDVRFLRPVFIGDTIAASAEVV 120 (161)
T ss_dssp EEEEECSCCBTTCEEEEEEEEE
T ss_pred EEEEEecCCCCCCEEEEEEEEE
Confidence 3466777999999998876543
No 94
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=40.60 E-value=81 Score=21.18 Aligned_cols=47 Identities=13% Similarity=-0.041 Sum_probs=38.7
Q ss_pred CCeEEEEEEEEccCceEEEEeecc---------eeeEEEeec-----------CCCCCCCEEEEEEee
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEV---------GLQATAWVS-----------VGAQIGDEVEVKVEE 81 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl---------~le~~~~~~-----------~~~~~Gd~v~v~v~~ 81 (96)
|....|.|.+-.. ..+.|-|... +++.-++.+ .-+++||.|.++|.+
T Consensus 58 GdiV~G~V~~V~~-~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 58 GDVVLGRVVDLRN-SIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp TCEEEEEEEEECS-SEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred CCEEEEEEEEEeC-CcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 6788899999777 8899998775 788877764 348999999999987
No 95
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=40.50 E-value=68 Score=21.00 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=31.0
Q ss_pred CCeEEEEEEEEccCceEEEEeecc-eeeEEEeec-----------CCCCCCCEEEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEV-GLQATAWVS-----------VGAQIGDEVEVKV 79 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl-~le~~~~~~-----------~~~~~Gd~v~v~v 79 (96)
|..++|.|.+... +.++|...+. .-+-.++++ ..+..||.|.|--
T Consensus 15 G~~y~a~V~~v~~-d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 15 GAFYKGFVKDVHE-DSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYS 71 (128)
T ss_dssp SCEEEEEEEEECS-SEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEE
T ss_pred CCEEEEEEEEEeC-CcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEe
Confidence 7899999999766 8899988754 323322222 3568899999844
No 96
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=39.57 E-value=47 Score=18.10 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=31.0
Q ss_pred CeEEEEEEEEccC-ceEEEEee---cceeeEEEeec----CCCCCCCEEEEEEeeec
Q 034382 35 RQYRALVLRFIKD-RTAALLLV---EVGLQATAWVS----VGAQIGDEVEVKVEEAH 83 (96)
Q Consensus 35 ~~~~AvVl~~~~~-~~~~vlL~---dl~le~~~~~~----~~~~~Gd~v~v~v~~vd 83 (96)
..++|.|.+.... ..+.|.+. +..+...+... .+++||+.+.+.+...+
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~~~l~L~~G~~V~a~ika~~ 63 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTD 63 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHHHTCCTTCEEEEECCGGG
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHHHHCCCCCCCEEEEEEecce
Confidence 3688888875443 44444443 23455555433 47999999999887544
No 97
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=38.96 E-value=44 Score=21.70 Aligned_cols=30 Identities=3% Similarity=-0.087 Sum_probs=21.1
Q ss_pred EEeecCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 62 TAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 62 ~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
.+++..++.|||.+.+.+.-..- .+.|.|+
T Consensus 71 ~vkF~~~V~PGD~l~l~v~~~~~-~~~l~F~ 100 (129)
T 3esi_A 71 NIKFQQPILPGKTLRLVLIWHAG-KQSLTFS 100 (129)
T ss_dssp EEEECSCCCTTCEEEEEEEEETT-TTEEEEE
T ss_pred eeEECcccCCCCEEEEEEEEEec-CCcEEEE
Confidence 45666899999999999875443 3445543
No 98
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=37.87 E-value=36 Score=19.44 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=28.0
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeecCCCCCCCEEEEEEeeecCCCC
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVSVGAQIGDEVEVKVEEAHPRDD 87 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~~~~~~Gd~v~v~v~~vdP~~~ 87 (96)
++..+..|-+---++.+...+.+.- +-+ ...-|||.+.+++.++...-.
T Consensus 16 ~~~~~v~I~~l~~~G~Gva~~~g~~----vfV-~~alPGE~V~v~i~k~kk~~~ 64 (70)
T 1yvc_A 16 GKEYEVTIEDMGKGGDGIARIDGFV----VFV-PNAEKGSVINVKVTAVKEKFA 64 (70)
T ss_dssp TCEEEEECCEECTTSCEEEEETTEE----EEE-TTCCTTCEEEEEEEEECSSCE
T ss_pred CCEEEEEEEEcCCCccEEEEECCEE----EEc-cCCCCCCEEEEEEEEeeCCeE
Confidence 4455544443322245555554322 222 347799999999999876543
No 99
>2cwz_A Thioesterase family protein; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.85A {Thermus thermophilus} SCOP: d.38.1.7
Probab=37.50 E-value=71 Score=20.38 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=20.7
Q ss_pred eeeEEEeecCCCCCCCEEEEEEeeecCCCCeEE
Q 034382 58 GLQATAWVSVGAQIGDEVEVKVEEAHPRDDIIY 90 (96)
Q Consensus 58 ~le~~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~ 90 (96)
+++..++.-.++.+||.|.++..-++.-...+.
T Consensus 63 g~~i~~~hl~pv~~G~~V~a~a~~~~~~~~~~~ 95 (141)
T 2cwz_A 63 GSYVEARHLASALPGMRVRVVARHEKTEGNRVY 95 (141)
T ss_dssp EEEEEEEECSCCCTTCEEEEEEEEEEEETTEEE
T ss_pred EEEEEEEEcccCCCCCEEEEEEEEEEECCCEEE
Confidence 455556666788999999885554443333333
No 100
>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans}
Probab=37.33 E-value=41 Score=26.23 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=17.7
Q ss_pred CCCCCCCEEEEEEeeecCC
Q 034382 67 VGAQIGDEVEVKVEEAHPR 85 (96)
Q Consensus 67 ~~~~~Gd~v~v~v~~vdP~ 85 (96)
.+.+|||.|.|+|.++.|+
T Consensus 79 eGAePGDvL~V~IldI~~~ 97 (409)
T 2wkn_A 79 KGAEPGDLLVVDLLDIGAR 97 (409)
T ss_dssp TTCCTTCEEEEEEEEEECC
T ss_pred cCCCCCCEEEEEEEEeeec
Confidence 7899999999999999984
No 101
>3mjj_A Predicted acetamidase/formamidase; beta/alpha structure, hydrolase; 1.99A {Thermoanaerobacter tengcongensis} PDB: 3tkk_A
Probab=37.33 E-value=26 Score=26.23 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=17.5
Q ss_pred CCCCCCCEEEEEEeeecCC
Q 034382 67 VGAQIGDEVEVKVEEAHPR 85 (96)
Q Consensus 67 ~~~~~Gd~v~v~v~~vdP~ 85 (96)
...+|||.+.|.+.++.|.
T Consensus 69 eGAePGD~L~V~I~~i~~~ 87 (301)
T 3mjj_A 69 EGAKEGDVLKVKIKKIEVA 87 (301)
T ss_dssp ETCCTTCEEEEEEEEEEEC
T ss_pred cCCCCCCEEEEEEEEEEec
Confidence 6799999999999999984
No 102
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=35.87 E-value=66 Score=18.79 Aligned_cols=33 Identities=27% Similarity=0.191 Sum_probs=27.4
Q ss_pred CCCeEEEEEEEEccCceEEEEeecceeeEEEeec
Q 034382 33 KERQYRALVLRFIKDRTAALLLVEVGLQATAWVS 66 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~ 66 (96)
+++.++|.|..-.+++.++|...| |..-.++..
T Consensus 19 D~~yYpA~I~si~~~~~Y~V~F~d-G~~etvk~~ 51 (67)
T 3p8d_A 19 DCRFYPAKVTAVNKDGTYTVKFYD-GVVQTVKHI 51 (67)
T ss_dssp TSCEEEEEEEEECTTSEEEEEETT-SCEEEEEGG
T ss_pred CCCEeeEEEEEECCCCeEEEEEeC-CceEEEeHH
Confidence 478999999998887789999988 777777665
No 103
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=35.74 E-value=70 Score=19.01 Aligned_cols=43 Identities=16% Similarity=0.025 Sum_probs=28.6
Q ss_pred EEEEEEEccCceEEEEeecceeeEEEeecCCCCCCCEEEEEEee
Q 034382 38 RALVLRFIKDRTAALLLVEVGLQATAWVSVGAQIGDEVEVKVEE 81 (96)
Q Consensus 38 ~AvVl~~~~~~~~~vlL~dl~le~~~~~~~~~~~Gd~v~v~v~~ 81 (96)
|+-|++- +++.+++-....--++.+..-.++++||-|.|-++-
T Consensus 6 P~kVvei-~~~~A~vd~~Gv~r~V~l~Lv~~~~vGD~VLVH~Gf 48 (75)
T 2z1c_A 6 PGKVIEV-NGPVAVVDFGGVKREVRLDLMPDTKPGDWVIVHTGF 48 (75)
T ss_dssp CEEEEEE-ETTEEEEEETTEEEEEECTTSTTCCTTCEEEEETTE
T ss_pred cEEEEEE-CCCEEEEEcCCEEEEEEEEEeCCCCCCCEEEEecch
Confidence 4566776 437888866555545444444678999999987543
No 104
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=35.69 E-value=37 Score=22.49 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=41.6
Q ss_pred CCCeEEEEEEEEccCceEEEEeecceeeEEEeecCC------CCCCCEEEEEEeeecCCCC
Q 034382 33 KERQYRALVLRFIKDRTAALLLVEVGLQATAWVSVG------AQIGDEVEVKVEEAHPRDD 87 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~~~------~~~Gd~v~v~v~~vdP~~~ 87 (96)
+|.++.|.|++..+++.+.|.+-|+|-...+..=.. --|.+.+..++..+.|..+
T Consensus 61 d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~ 121 (169)
T 3ntk_A 61 DEVFYRAQIRKVLDDGKCEVHFIDFGNNAVTQQFRQLPEELAKPARYSRHCELDASTISKC 121 (169)
T ss_dssp TTEEEEEEEEEECSTTCEEEEETTTTEEEEESCEECCCHHHHSSCCSSEEEEECGGGSCHH
T ss_pred CCcEEEEEEEEECCCCEEEEEEEecCCeEEhhhhhccCHHHhhCCceeEEEEECCcCCCCC
Confidence 467899999998875679999999998766311011 2488899999998888754
No 105
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=35.00 E-value=13 Score=18.63 Aligned_cols=11 Identities=18% Similarity=1.168 Sum_probs=8.8
Q ss_pred ccchHHHHhhh
Q 034382 20 LRYWIIEFLRR 30 (96)
Q Consensus 20 ~RyW~l~YL~~ 30 (96)
--+|..+||..
T Consensus 21 fgfwlfkylqk 31 (32)
T 2lx0_A 21 FGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 45899999975
No 106
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=34.76 E-value=20 Score=20.77 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=34.7
Q ss_pred eEEEEEEEEccCceEEEEeec-ceeeEEEeec-----CCCCCCCEEEEEEeeecCCCCeE
Q 034382 36 QYRALVLRFIKDRTAALLLVE-VGLQATAWVS-----VGAQIGDEVEVKVEEAHPRDDII 89 (96)
Q Consensus 36 ~~~AvVl~~~~~~~~~vlL~d-l~le~~~~~~-----~~~~~Gd~v~v~v~~vdP~~~~l 89 (96)
..+|.|++-++.+.+.|.+++ --..+.++-+ ....+||.|.+.+..-|+-.+.|
T Consensus 8 ~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I 67 (71)
T 1hr0_W 8 RTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRI 67 (71)
T ss_dssp CCEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEE
T ss_pred EEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEE
Confidence 447899988876788887755 2344555443 34669999998865434444444
No 107
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=34.74 E-value=82 Score=19.78 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=36.9
Q ss_pred CeEEEEEEEEccCceEEEEeecceeeEEEeec------CCCCCCCEEEEEEeeec
Q 034382 35 RQYRALVLRFIKDRTAALLLVEVGLQATAWVS------VGAQIGDEVEVKVEEAH 83 (96)
Q Consensus 35 ~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~------~~~~~Gd~v~v~v~~vd 83 (96)
-+-.|.|++-++.++..|.+++ |-+.-+..+ --+.+||.|.|....-|
T Consensus 20 ~e~~g~V~~~lgn~~~~V~l~n-G~~~la~i~GKmRk~IwI~~GD~VlVe~~~yd 73 (102)
T 1jt8_A 20 NEILGIIEQMLGASRVRVRCLD-GKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQ 73 (102)
T ss_dssp CCEEEEEECSSCSSEEEEEEET-TEEEEEECCHHHHHHHCCCSCEEEEECCBCCT
T ss_pred CEEEEEEEEEcCCCEEEEEECC-CCEEEEEEcccceeeEEecCCCEEEEEeccCC
Confidence 4568999999987899999987 555555555 34889999999877655
No 108
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=34.58 E-value=31 Score=20.62 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=18.8
Q ss_pred eecCCCCCCCEEEEEEeeecCCCCeEEE
Q 034382 64 WVSVGAQIGDEVEVKVEEAHPRDDIIYL 91 (96)
Q Consensus 64 ~~~~~~~~Gd~v~v~v~~vdP~~~~l~l 91 (96)
+.+..+..||-+.|+|..++. |.+++
T Consensus 7 k~GEsI~IGd~I~ItVl~v~g--~~VrL 32 (70)
T 2jpp_A 7 KVGESINIGDDITITILGVSG--QQVRI 32 (70)
T ss_dssp ETTCEEEETTTEEEEEEEEET--TEEEE
T ss_pred cCCCeEEECCCEEEEEEEEeC--CEEEE
Confidence 334667788999999988873 55555
No 109
>2c2i_A RV0130; hotdog, hydratase, lyase, structural proteomics in europe, spine, structural genomics; 1.8A {Mycobacterium tuberculosis} SCOP: d.38.1.4
Probab=34.51 E-value=40 Score=21.15 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=17.2
Q ss_pred EEeecCCCCCCCEEEEEE--eeecC
Q 034382 62 TAWVSVGAQIGDEVEVKV--EEAHP 84 (96)
Q Consensus 62 ~~~~~~~~~~Gd~v~v~v--~~vdP 84 (96)
.+++..++.|||+|.++. .++++
T Consensus 93 ~~rF~~PV~~Gd~l~~~~~v~~~~~ 117 (151)
T 2c2i_A 93 KVRFPAPVPVGSRVRATSSLVGVED 117 (151)
T ss_dssp EEECCSCCBTTCEEEEEEEEEEEEE
T ss_pred EEEECCCcCCCCEEEEEEEEEEEEE
Confidence 467778999999998874 44544
No 110
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=34.29 E-value=1e+02 Score=20.57 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=42.5
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec------CCCCCCCEEEEEEeeecCCCCeEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS------VGAQIGDEVEVKVEEAHPRDDIIYL 91 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~------~~~~~Gd~v~v~v~~vdP~~~~l~l 91 (96)
.-+-.|.|++-++.++..|.+++ |-+.-+..+ .-+.+||.|.|.+..-|.-.+.|..
T Consensus 30 ege~~g~V~e~lgn~~f~V~l~n-G~~~La~I~GKmRk~IwI~~GD~VlVe~~~yd~~KG~Ii~ 92 (143)
T 1d7q_A 30 DGQEYAQVIKMLGNGRLEAMCFD-GVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVIL 92 (143)
T ss_dssp TTEEEEEEEEECSSSEEEEEETT-TEEEEEECCSGGGGSCCCCTTCEEEEECSSSSSSCCEEEE
T ss_pred CCEEEEEEEEEcCCCEEEEEeCC-CCEEEEEecccceeeEEecCCCEEEEeeccCCCCeEEEEE
Confidence 34679999999997899999887 445545554 3478999999998777766665554
No 111
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=34.14 E-value=48 Score=21.49 Aligned_cols=26 Identities=27% Similarity=0.144 Sum_probs=18.7
Q ss_pred CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 67 VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 67 ~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
..+.|||.|.|.+.-..--...++.+
T Consensus 17 P~f~~GDtv~V~~~i~EG~keRiQ~F 42 (114)
T 3r8s_P 17 PSFRPGDTVEVKVWVVEGSKKRLQAF 42 (114)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEE
T ss_pred CccCCCCEEEEEEEEecCCceeeeeE
Confidence 46999999999987665544445444
No 112
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=33.61 E-value=60 Score=21.96 Aligned_cols=27 Identities=22% Similarity=0.068 Sum_probs=19.7
Q ss_pred CCCCCCCEEEEEEeeecCCCCeEEEEE
Q 034382 67 VGAQIGDEVEVKVEEAHPRDDIIYLKE 93 (96)
Q Consensus 67 ~~~~~Gd~v~v~v~~vdP~~~~l~l~e 93 (96)
..+.|||.|.|.+.-..--...++.+|
T Consensus 20 P~F~~GDtV~V~~~i~EG~keRiQ~Fe 46 (146)
T 3v2d_T 20 PEFRPGDTVRVSYKVKEGNRTRIQDFE 46 (146)
T ss_dssp CCCCTTCEEEEEEEEECSSCEEEEEEE
T ss_pred CCcCCCCEEEEEEEEccCCceeeeeEE
Confidence 469999999999987765555555443
No 113
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=32.58 E-value=37 Score=19.79 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=19.4
Q ss_pred EeecCCCCCCCEEEEEEeeecCCCCeEEE
Q 034382 63 AWVSVGAQIGDEVEVKVEEAHPRDDIIYL 91 (96)
Q Consensus 63 ~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l 91 (96)
=+....+..||-+.|+|..++. |.+++
T Consensus 8 Rk~GE~I~Igd~I~I~Vl~i~g--~~Vrl 34 (63)
T 2bti_A 8 RRVGETLMIGDEVTVTVLGVKG--NQVRI 34 (63)
T ss_dssp EETTCEEEETTTEEEEEEEEET--TEEEE
T ss_pred ccCCCeEEeCCCEEEEEEEEeC--CEEEE
Confidence 3344677889999999988874 55554
No 114
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=32.53 E-value=75 Score=18.39 Aligned_cols=39 Identities=23% Similarity=0.068 Sum_probs=27.9
Q ss_pred EEEEEEEccCceEEEEeecceeeEEEeec---CCCCCCCEEEEE
Q 034382 38 RALVLRFIKDRTAALLLVEVGLQATAWVS---VGAQIGDEVEVK 78 (96)
Q Consensus 38 ~AvVl~~~~~~~~~vlL~dl~le~~~~~~---~~~~~Gd~v~v~ 78 (96)
.|.|++++.++.+.|.+.+--- .+.+. ..+++|+.|.|.
T Consensus 28 ~~~v~~~i~~~~G~V~~~G~~W--~A~s~~~~~~i~~G~~V~Vv 69 (82)
T 3cp0_A 28 RAEVLEDVGATSGQVRLDGSIW--SARSMDPTHTFAEGEIVSVI 69 (82)
T ss_dssp EEEEEECBCSSCCEEEETTEEE--EEEESSTTCCBCTTCEEEEE
T ss_pred EEEEEEEeCCCCEEEEECCEEE--EEEECCCCCccCCCCEEEEE
Confidence 4889998864468888886544 44453 569999998764
No 115
>3khp_A MAOC family protein; dehydrogenase, oxidoreductase, structural genomics; HET: TLA; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=31.43 E-value=78 Score=23.19 Aligned_cols=31 Identities=6% Similarity=0.040 Sum_probs=23.7
Q ss_pred eEEEeecCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 60 QATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 60 e~~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
...+++..++.|||.|.+++...+ .+.+.|+
T Consensus 256 ~~~~rF~~PV~~Gdtl~~~~~v~~--~g~v~~~ 286 (311)
T 3khp_A 256 SIAARFTKPVFPGETLSTVIWRTE--PGRAVFR 286 (311)
T ss_dssp EEEEEECSCCCTTCCEEEEEEEEE--TTEEEEE
T ss_pred EEEEEEecccCCCCEEEEEEEEEc--CCEEEEE
Confidence 345677789999999999998876 4666654
No 116
>1ixl_A Hypothetical protein PH1136; alpha+beta, hot-DOG-fold, structural genomics, unknown funct; 1.94A {Pyrococcus horikoshii} SCOP: d.38.1.5
Probab=30.97 E-value=90 Score=18.84 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=16.1
Q ss_pred EEEeecCCCCCCCEEEEEEeeecCC
Q 034382 61 ATAWVSVGAQIGDEVEVKVEEAHPR 85 (96)
Q Consensus 61 ~~~~~~~~~~~Gd~v~v~v~~vdP~ 85 (96)
..++.-.++.+||.+.++..-++..
T Consensus 73 ~~i~f~~pv~~Gd~l~~~~~v~~~~ 97 (131)
T 1ixl_A 73 AEVRFTKPVKVGDKLVAKAKIIEDL 97 (131)
T ss_dssp EEEEECSCCBTTCEEEEEEEEEEEE
T ss_pred EEEEECCCCCCCCEEEEEEEEEEec
Confidence 3455557888999887765544433
No 117
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=30.61 E-value=54 Score=26.30 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=33.0
Q ss_pred CCeEEEEEEEEcc-----------CceEEEEeecceeeE---------EEeecCCCCCCCEEEEEEeeecCCCC
Q 034382 34 ERQYRALVLRFIK-----------DRTAALLLVEVGLQA---------TAWVSVGAQIGDEVEVKVEEAHPRDD 87 (96)
Q Consensus 34 ~~~~~AvVl~~~~-----------~~~~~vlL~dl~le~---------~~~~~~~~~~Gd~v~v~v~~vdP~~~ 87 (96)
|..|.|.|.+-.+ ++-+.+++-|+.-+- .-.....+++||.|.|+|.+...-+-
T Consensus 46 GnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~K 119 (517)
T 2bx2_L 46 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK 119 (517)
T ss_dssp TCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTC
T ss_pred CCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccC
Confidence 6677777654443 234667777663110 01122458999999999999665443
No 118
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=30.44 E-value=97 Score=19.03 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=37.5
Q ss_pred eEEEEEEEEccC----ceEEEEeecc--eeeEEEeec---CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 36 QYRALVLRFIKD----RTAALLLVEV--GLQATAWVS---VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 36 ~~~AvVl~~~~~----~~~~vlL~dl--~le~~~~~~---~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
.-.|.|++.... ..-.++|-|- .+.+.++-+ ..+++|+.|.++=+.++-.++.+++.
T Consensus 19 ~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~~~~~~~G~~V~i~n~~v~~~~G~~~L~ 84 (109)
T 2kbn_A 19 NLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAELPLLEQGESYLLRSVVVGEYNDRFQVQ 84 (109)
T ss_dssp EEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGCCCCCCTTCEEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECcccccccCCCCEEEEEEEEEEEECCEEEEE
Confidence 445666654432 1223445444 355556652 48999999999999999999887764
No 119
>2k14_A YUAF protein; NFED-like protein, cellular stress, unknown function; NMR {Bacillus subtilis}
Probab=29.60 E-value=87 Score=18.26 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=27.9
Q ss_pred EEEEEEEccC-ceEEEEeecce-e-eEEEee--cCCCCCCCEEEEE
Q 034382 38 RALVLRFIKD-RTAALLLVEVG-L-QATAWV--SVGAQIGDEVEVK 78 (96)
Q Consensus 38 ~AvVl~~~~~-~~~~vlL~dl~-l-e~~~~~--~~~~~~Gd~v~v~ 78 (96)
.|.|+...++ +.+.|.+..-+ - ...+.+ +.++++|+.|.|.
T Consensus 24 ~g~V~~~i~~~~~G~V~i~g~gg~~~W~A~s~~~~~i~~G~~V~Vv 69 (84)
T 2k14_A 24 LGKVITAVPVDGFGEVVIEGIGGTISKSAVSFDNQQISYGTTVLVV 69 (84)
T ss_dssp EEEEEECBCTTCEEEEEESCTTSCCCEEEEETTSCCBCSSCEEEEE
T ss_pred EEEEEEEeCCCCcEEEEEeeECccEEEEEEeCCCCccCCCCEEEEE
Confidence 4788888853 57888888611 1 345555 3569999998763
No 120
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.13 E-value=91 Score=18.31 Aligned_cols=32 Identities=16% Similarity=0.043 Sum_probs=24.7
Q ss_pred CCCeEEEEEEEEccCceEEEEeecceeeEEEee
Q 034382 33 KERQYRALVLRFIKDRTAALLLVEVGLQATAWV 65 (96)
Q Consensus 33 ~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~ 65 (96)
+|..++|.|..-.+++.+.|.+.|. -.-.++.
T Consensus 22 Dg~~Y~A~I~~v~~~~~~~V~f~Dy-n~e~v~~ 53 (74)
T 2equ_A 22 DCRYYPAKIEAINKEGTFTVQFYDG-VIRCLKR 53 (74)
T ss_dssp SSSEEEEEEEEESTTSSEEEEETTS-CEEEECG
T ss_pred CCCEEEEEEEEECCCCEEEEEEecC-CeEEecH
Confidence 5789999999976657899999998 4444444
No 121
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=29.02 E-value=1.5e+02 Score=20.75 Aligned_cols=55 Identities=22% Similarity=0.128 Sum_probs=39.6
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec------------CCCCCCCEEEEEEeeecCCCCeEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS------------VGAQIGDEVEVKVEEAHPRDDIIYL 91 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~------------~~~~~Gd~v~v~v~~vdP~~~~l~l 91 (96)
|..-.|.|.+-.. ..+.|-|.+ .++.-++.+ ..+++||.|..+|.++|+. +.+.|
T Consensus 58 GDiV~G~V~~v~~-~~a~V~I~~-~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~-~~i~L 124 (229)
T 2ba0_A 58 GDVVIGIIREVAA-NGWAVDIYS-PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPK-MKVTL 124 (229)
T ss_dssp TCEEEEEEEEECS-SEEEEECSS-SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTT-CCEEE
T ss_pred CCEEEEEEEEEeC-CeEEEEeCC-CeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCC-CcEEE
Confidence 6777899999777 777777753 234444432 3589999999999999974 45544
No 122
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=27.70 E-value=1.8e+02 Score=21.15 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=35.0
Q ss_pred CCeEEEEEEEEccCceEEEEeecc-eeeEEEeec-------CCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEV-GLQATAWVS-------VGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl-~le~~~~~~-------~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|..-.+-|.+-.++--+-|-+ .+ +.+.-++.+ ..++.||.+.|.+ .+|+ .+.|.+.
T Consensus 70 G~~~~g~V~~v~~~~GaFVdi-G~~~~d~lvp~sel~~~~~~~~~~Gd~v~v~l-~iD~-~~Ri~ls 133 (285)
T 3go5_A 70 DQFGWGRVTEVRKDLGVFVDT-GLPDKEIVVSLDILPELKELWPKKGDQLYIRL-EVDK-KDRIWGL 133 (285)
T ss_dssp SSCEEEEEEEEETTTEEEEEC-SCTTCCEEEEGGGSCSSGGGSCCTTCEEEEEE-EECT-TSCEEEE
T ss_pred CCEEEEEEEEEccCceEEEEE-CCCCcEEEEEHHHCCcccccccCCCCEEEEEE-EECC-CCcEEEE
Confidence 666677777755312333322 22 235555554 2569999998886 7999 7888775
No 123
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=27.54 E-value=55 Score=24.71 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=22.0
Q ss_pred CCCCCCEEEEEEeeecCCCCeEEEEEec
Q 034382 68 GAQIGDEVEVKVEEAHPRDDIIYLKEVV 95 (96)
Q Consensus 68 ~~~~Gd~v~v~v~~vdP~~~~l~l~e~~ 95 (96)
..-|||+|.+++.+....-..-++.|+.
T Consensus 43 ~alpGe~v~~~i~~~~~~~~~~~~~~i~ 70 (433)
T 1uwv_A 43 GLLPQENAEVTVTEDKKQYARAKVVRRL 70 (433)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred CCCCCCEEEEEEEeecCCceeEEecccc
Confidence 4679999999999988766666666654
No 124
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.24 E-value=91 Score=22.83 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=29.9
Q ss_pred eEEEEEEEEccCceEEEEeecceeeEEEeec---CCCCCCCEEEE
Q 034382 36 QYRALVLRFIKDRTAALLLVEVGLQATAWVS---VGAQIGDEVEV 77 (96)
Q Consensus 36 ~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~---~~~~~Gd~v~v 77 (96)
-.-|+|++...++.+.|.-..=-|-+.+... ..++||++|.+
T Consensus 99 L~iGtvlev~dd~~aiV~s~Gr~~~V~Vsp~Vd~e~LkPG~rVaL 143 (251)
T 3m9b_A 99 SGYGVLLATHDDDTVDVFTSGRKMRLTCSPNIDAASLKKGQTVRL 143 (251)
T ss_dssp EEEEEEEEECSSSCEEEECSSSCCEECBCTTSCTTTSCSSCEEEE
T ss_pred ceEEEEEEEcCCCEEEEEeCCceEEEEeCCCCCHHHCCCCCEEEe
Confidence 5689999988767777775544444444432 57999999977
No 125
>3qoo_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, hot-DOG superfamily; 1.25A {Thermanaerovibrio acidaminovorans}
Probab=27.00 E-value=1.2e+02 Score=19.71 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=22.2
Q ss_pred eeeEEEeecCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 58 GLQATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 58 ~le~~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
|++..+..-.+..+|+.|.+++.-++--...+.|+
T Consensus 68 G~~v~v~Hlapt~~G~~V~~~a~v~~v~gr~v~f~ 102 (138)
T 3qoo_A 68 GVRSEVHNLAPAVLGDDVTFTVTVDRVEGNRVVLS 102 (138)
T ss_dssp EEEEEEEECSCCBTTCEEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEEcCCCCCCCEEEEEEEEEEEcCCEEEEE
Confidence 44555666678999999887665444435555543
No 126
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=26.69 E-value=28 Score=23.27 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=24.0
Q ss_pred HHHhhhCCCCCeEEEEEEEEccC-ceEEEEeeccee
Q 034382 25 IEFLRRQPKERQYRALVLRFIKD-RTAALLLVEVGL 59 (96)
Q Consensus 25 l~YL~~~~~~~~~~AvVl~~~~~-~~~~vlL~dl~l 59 (96)
++|+.=+. ---|+|+|-.-.+. +.|.|++-|-.|
T Consensus 10 lVW~K~q~-yPfWPAVVKSV~r~ekkA~VL~Ie~~m 44 (134)
T 3pmi_A 10 LVWHKHKK-YPFWPAVVKSVRQRDKKASVLYIEGHM 44 (134)
T ss_dssp EEEECCTT-SCCEEEEEEEEEGGGTEEEEEECCSSC
T ss_pred EEEEEecc-CCCcchheeeeeeccceEEEEEEeCCC
Confidence 45555544 45899999876554 899998876544
No 127
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=26.59 E-value=13 Score=23.65 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.2
Q ss_pred CCCCCCCEEEEEEeee
Q 034382 67 VGAQIGDEVEVKVEEA 82 (96)
Q Consensus 67 ~~~~~Gd~v~v~v~~v 82 (96)
.+.++||.|.|.+..|
T Consensus 89 ~g~~~GD~V~V~L~~~ 104 (104)
T 2d9r_A 89 IGKQPGDSVYVTLLPL 104 (104)
T ss_dssp HTCCTTSEEEEEEEEC
T ss_pred cCCCCCCEEEEEEEEC
Confidence 6788999999998653
No 128
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.21 E-value=1.3e+02 Score=19.09 Aligned_cols=54 Identities=19% Similarity=0.065 Sum_probs=37.9
Q ss_pred CeEEEEEEEEccCceEEEEeecceeeEEEeec------CCCCCCCEEEEEEeeec-CCCCeE
Q 034382 35 RQYRALVLRFIKDRTAALLLVEVGLQATAWVS------VGAQIGDEVEVKVEEAH-PRDDII 89 (96)
Q Consensus 35 ~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~------~~~~~Gd~v~v~v~~vd-P~~~~l 89 (96)
-+-.|.|++-++.++..|.+++ |-+.-+..+ --+.+||.|.|....-| .-.+.|
T Consensus 15 ge~~g~V~~~lgn~~f~V~l~n-G~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd~~~kg~I 75 (111)
T 2dgy_A 15 QQQIVRVLRTPGNNLHEVETAQ-GQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEI 75 (111)
T ss_dssp SCEEEEEEECCSSSEEEEECTT-SCEEEEECCTTCCSCCCCCSSCEEEEEECSSCSSCCEEE
T ss_pred CeEEEEEEEeCCCCEEEEEeCC-CCEEEEEechhhcccEEEcCCCEEEEEecccCCcceEEE
Confidence 4568999999987899998886 344444444 34789999999887554 333344
No 129
>3kuv_A Fluoroacetyl coenzyme A thioesterase; fluoroacetyl-COA thioesterase FLK, hot DOG folding, thioeste hydrolase; 1.50A {Streptomyces cattleya} PDB: 3kuw_A 3kvu_A* 3p2q_A 3p2r_A 3p2s_A 3kv7_A 3kv8_A 3kvz_A* 3kw1_A* 3kx7_A 3kx8_A 3kvi_A 3p3i_A 3p3f_A
Probab=26.09 E-value=1.2e+02 Score=19.71 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=23.4
Q ss_pred ceeeEEEeecCCCCCCCEEEEEEeeecCCCCeEEE
Q 034382 57 VGLQATAWVSVGAQIGDEVEVKVEEAHPRDDIIYL 91 (96)
Q Consensus 57 l~le~~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l 91 (96)
.|.+..+..-.+..+|+.|.++..-++--...+.|
T Consensus 68 VG~~v~v~Hlapt~~G~~V~~~a~l~~v~gr~~~f 102 (139)
T 3kuv_A 68 LGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSW 102 (139)
T ss_dssp EEEEEEEECCSCCCTTSEEEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEEccCCCCCCEEEEEEEEEEECCCEEEE
Confidence 46666677778999999998776655444444443
No 130
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=26.08 E-value=1.2e+02 Score=18.82 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=33.1
Q ss_pred HHHhhhCCCCCeEEEEEEEEccCceEEEEeecceeeEEEeec-----CCCCCCCEEEEEE
Q 034382 25 IEFLRRQPKERQYRALVLRFIKDRTAALLLVEVGLQATAWVS-----VGAQIGDEVEVKV 79 (96)
Q Consensus 25 l~YL~~~~~~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~-----~~~~~Gd~v~v~v 79 (96)
+.-|++-| ..=|.|++-.+++.+.|... -|-+..+.+. ..++||++|.|.-
T Consensus 30 l~~L~~~P---~~Vg~v~e~~d~~~~iVk~s-~g~~~~V~v~~~Vd~~~LkpG~rVaLn~ 85 (109)
T 2wg5_A 30 VARLRSPP---LLVGVVSDILEDGRVVVKSS-TGPKFVVNTSQYINEEELKPGARVALNQ 85 (109)
T ss_dssp HHHHHSCC---EEEEEEEEECTTSCEEEEET-TSCEEEECBCTTSCTTTCCTTCEEEEET
T ss_pred HHHHhCCC---ceEEEEEEEecCCEEEEEeC-CCCEEEEEcccccCHHHCCCCCEEEECC
Confidence 34444444 56799999998777777643 2333334432 6799999998753
No 131
>1pn2_A Peroxisomal hydratase-dehydrogenase-epimerase; hot-DOG fold, hydratase 2 motif, lyase; 1.95A {Candida tropicalis} SCOP: d.38.1.4 d.38.1.4 PDB: 1pn4_A*
Probab=25.74 E-value=1.4e+02 Score=21.05 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCCEEEEEEeeecCCCCeEEEE
Q 034382 61 ATAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 92 (96)
Q Consensus 61 ~~~~~~~~~~~Gd~v~v~v~~vdP~~~~l~l~ 92 (96)
..+++..++.+||.|.+++.+- -.+.++++
T Consensus 226 ~~~rf~~Pv~~Gdtl~~~~~~~--~~g~v~~~ 255 (280)
T 1pn2_A 226 IKARFTGIVFPGETLRVLAWKE--SDDTIVFQ 255 (280)
T ss_dssp EEEEECSCCCTTCEEEEEEEEC--SSSEEEEE
T ss_pred EEEEEcCCcCCCCEEEEEEEEe--CCCEEEEE
Confidence 4566678999999999999862 25566653
No 132
>2l3b_A Conserved protein found in conjugate transposon; beta, structural genomics, PSI-biology; NMR {Bacteroides thetaiotaomicron}
Probab=25.60 E-value=50 Score=21.98 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.4
Q ss_pred EEeecCCCCCCCEEEEEEeee
Q 034382 62 TAWVSVGAQIGDEVEVKVEEA 82 (96)
Q Consensus 62 ~~~~~~~~~~Gd~v~v~v~~v 82 (96)
.++++..+.+|+.+.+|+.-.
T Consensus 17 tmPV~k~I~~GeTvEIR~~L~ 37 (130)
T 2l3b_A 17 TMPVPKKLKVGETAEIRCQLH 37 (130)
T ss_dssp ECCCCSSCCTTCEEEEEEEEE
T ss_pred EeccccccCCCCeEEEEEEEe
Confidence 466778999999999999754
No 133
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=24.30 E-value=77 Score=24.12 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=22.6
Q ss_pred CCCCCCCEEEEEEeeecCCCCeEEEEEec
Q 034382 67 VGAQIGDEVEVKVEEAHPRDDIIYLKEVV 95 (96)
Q Consensus 67 ~~~~~Gd~v~v~v~~vdP~~~~l~l~e~~ 95 (96)
...-|||+|.+++.+....-..-++.|+.
T Consensus 42 ~~alPGe~v~~~i~~~k~~~~~a~~~~v~ 70 (425)
T 2jjq_A 42 PFSAPGDEIIVERVERVKKRRVASQWKLV 70 (425)
T ss_dssp TTCCTTCEEEEEEEEESSSSEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEecCCceEEEEcccC
Confidence 45779999999999988766666666653
No 134
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=23.96 E-value=73 Score=22.55 Aligned_cols=12 Identities=42% Similarity=0.518 Sum_probs=10.4
Q ss_pred CCCCCCCEEEEE
Q 034382 67 VGAQIGDEVEVK 78 (96)
Q Consensus 67 ~~~~~Gd~v~v~ 78 (96)
+.++|||+|.|.
T Consensus 223 d~~~PGDrV~vt 234 (268)
T 2vl6_A 223 DSARPGDRVKVT 234 (268)
T ss_dssp TSSCTTCEEEEE
T ss_pred CcccCCCEEEEE
Confidence 689999999875
No 135
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=23.81 E-value=1.7e+02 Score=19.97 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=32.5
Q ss_pred CCeEEEEEEEEcc------------------C-ceEEEEeecc-----------eeeEEEeec---CCCCCCCEEEEEEe
Q 034382 34 ERQYRALVLRFIK------------------D-RTAALLLVEV-----------GLQATAWVS---VGAQIGDEVEVKVE 80 (96)
Q Consensus 34 ~~~~~AvVl~~~~------------------~-~~~~vlL~dl-----------~le~~~~~~---~~~~~Gd~v~v~v~ 80 (96)
|.+|+|.|++--+ + =.+.|...|. .+..+++.. ..+++|+.|+|--.
T Consensus 25 GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iRpRARt~l~w~~L~vGqvVMvNYN 104 (161)
T 3db3_A 25 GAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQDLEVGQVVMLNYN 104 (161)
T ss_dssp CCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEECCCCCBCCGGGCCTTCEEEEEEC
T ss_pred CcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccccceEEeccHHHCCcCcEEEEecC
Confidence 7899999998433 1 3566776665 222223322 67899999988655
Q ss_pred eecC
Q 034382 81 EAHP 84 (96)
Q Consensus 81 ~vdP 84 (96)
-=+|
T Consensus 105 ~d~P 108 (161)
T 3db3_A 105 PDNP 108 (161)
T ss_dssp SSST
T ss_pred CCCc
Confidence 4444
No 136
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=23.19 E-value=64 Score=19.36 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=18.3
Q ss_pred ecCCCCCCCEEEEEEeeecCCCCeEEE
Q 034382 65 VSVGAQIGDEVEVKVEEAHPRDDIIYL 91 (96)
Q Consensus 65 ~~~~~~~Gd~v~v~v~~vdP~~~~l~l 91 (96)
.+..+..||-+.|+|..++. |.+++
T Consensus 20 ~GEsI~IGddI~ItVl~i~g--~qVrL 44 (73)
T 1vpz_A 20 VGETLMVGDDVTVTVLGVKG--NQVRI 44 (73)
T ss_dssp TTCEEEETTTEEEEEEEEET--TEEEE
T ss_pred CCCEEEeCCCEEEEEEEEeC--CEEEE
Confidence 34677888988998888873 55554
No 137
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=23.19 E-value=1.5e+02 Score=20.15 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=29.6
Q ss_pred EEEEEEEccCceEEEEeecceeeEEEeec---CCCCCCCEEEE
Q 034382 38 RALVLRFIKDRTAALLLVEVGLQATAWVS---VGAQIGDEVEV 77 (96)
Q Consensus 38 ~AvVl~~~~~~~~~vlL~dl~le~~~~~~---~~~~~Gd~v~v 77 (96)
-|++|....++.+-|+--.=-|.+.+..+ ..+.||++|.+
T Consensus 10 ygt~l~~~~d~tadV~t~GRkMrv~vsP~vd~~~L~~Gq~V~L 52 (153)
T 2wfw_A 10 YGVLLSVHEDKTVDVFTSGRKMRLTCSPNIDTDTLALGQTVRL 52 (153)
T ss_dssp EEEEEEECTTSCEEEEETTEEEEECBCTTCCGGGCCTTCEEEE
T ss_pred eEEEEEEcCCCeEEEEECCcEEEEEeCCCCCHHHCCCCCEEEE
Confidence 57888877666777777666666666655 68999999976
No 138
>2bi0_A Hypothetical protein RV0216; conserved hypothetical, hotdog-fold, structural proteomics in europe, spine, structural genomics; 1.9A {Mycobacterium tuberculosis} SCOP: d.38.1.4 d.38.1.4
Probab=22.33 E-value=1.1e+02 Score=22.55 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=21.5
Q ss_pred EEeecCCCCCCCEEEE--EEeeecCC--CCeEEEE
Q 034382 62 TAWVSVGAQIGDEVEV--KVEEAHPR--DDIIYLK 92 (96)
Q Consensus 62 ~~~~~~~~~~Gd~v~v--~v~~vdP~--~~~l~l~ 92 (96)
.++...++.+||.|.+ +|.+..|. .+.++++
T Consensus 276 ~~r~~~PV~~GDtl~~~~eV~~~~~~~~~g~v~~~ 310 (337)
T 2bi0_A 276 SCDHTAPVHEGDTLYSELHIESAQAHADGGVLGLR 310 (337)
T ss_dssp EEEECSCCCTTCEEEEEEEEEEEEECSSSEEEEEE
T ss_pred ceEecCCcCCCCEEEEEEEEEEeEEcCCCCEEEEE
Confidence 4666679999999998 55555555 5555554
No 139
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=21.95 E-value=82 Score=22.54 Aligned_cols=12 Identities=33% Similarity=0.227 Sum_probs=10.2
Q ss_pred CCCCCCCEEEEE
Q 034382 67 VGAQIGDEVEVK 78 (96)
Q Consensus 67 ~~~~~Gd~v~v~ 78 (96)
+.+.|||+|.|.
T Consensus 210 d~~~PGDrV~vt 221 (279)
T 1ltl_A 210 DTLTPGDIVRVT 221 (279)
T ss_dssp TCCCTTCEEEEE
T ss_pred CccCCCCEEEEE
Confidence 689999999864
No 140
>2l7q_A Conserved protein found in conjugate transposon; NESG, structural genomics, PSI-biology; NMR {Bacteroides vulgatus}
Probab=21.46 E-value=51 Score=21.75 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=17.2
Q ss_pred EEeecCCCCCCCEEEEEEeee
Q 034382 62 TAWVSVGAQIGDEVEVKVEEA 82 (96)
Q Consensus 62 ~~~~~~~~~~Gd~v~v~v~~v 82 (96)
.++++..+.+|+.+.+|+.-.
T Consensus 16 tmPV~k~I~~GeTvEIR~~L~ 36 (124)
T 2l7q_A 16 SMPVADEIAGDETVEIRLEIK 36 (124)
T ss_dssp ECCCCSCCCSSEEEEEEEEEE
T ss_pred EeccccccCCCCeEEEEEEEe
Confidence 356678999999999999754
No 141
>3kh8_A MAOC-like dehydratase; hot DOG domain, lyase; 2.00A {Phytophthora capsici}
Probab=20.99 E-value=1.9e+02 Score=21.35 Aligned_cols=24 Identities=8% Similarity=0.100 Sum_probs=19.4
Q ss_pred eEEEeecCCCCCCCEEEEEEeeec
Q 034382 60 QATAWVSVGAQIGDEVEVKVEEAH 83 (96)
Q Consensus 60 e~~~~~~~~~~~Gd~v~v~v~~vd 83 (96)
...+++..++.|||.|.+++...+
T Consensus 276 ~~~~rF~~PV~~Gdtl~~~~~~~~ 299 (332)
T 3kh8_A 276 SIRVRFSSPCFPGETIQTRMWQEG 299 (332)
T ss_dssp EEEEEECSCCCTTCEEEEEEEECS
T ss_pred EEEEEEecccCCCCEEEEEEEEEC
Confidence 455677779999999999998765
No 142
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=20.58 E-value=2e+02 Score=19.35 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=34.7
Q ss_pred CCeEEEEEEEEccCceEEEEeecceeeEEEeec----------CCCCCCCEEEEEEeeecCC
Q 034382 34 ERQYRALVLRFIKDRTAALLLVEVGLQATAWVS----------VGAQIGDEVEVKVEEAHPR 85 (96)
Q Consensus 34 ~~~~~AvVl~~~~~~~~~vlL~dl~le~~~~~~----------~~~~~Gd~v~v~v~~vdP~ 85 (96)
|..--|.|.+-.. ..+.|-|-...++..++.. ..+.+||-|.-+|..+++.
T Consensus 8 gDvViG~V~~v~~-~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~~~~ 68 (175)
T 2ja9_A 8 NDFVIGVIIGTFS-DSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKE 68 (175)
T ss_dssp TCEEEEEEEEECS-SEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTT
T ss_pred cCEEEEEEEEEEC-cEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEecCC
Confidence 3455678888777 6666666553333333322 4599999999999999864
No 143
>3urg_A ALR1010 protein, CCBP; calcium binding protein, metal binding protein; HET: MNB; 2.00A {Nostoc} PDB: 2k2v_A 2p0p_A 2p0q_A
Probab=20.49 E-value=47 Score=22.51 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=18.2
Q ss_pred HHHhhhCCCCCeEEEEEEEEcc
Q 034382 25 IEFLRRQPKERQYRALVLRFIK 46 (96)
Q Consensus 25 l~YL~~~~~~~~~~AvVl~~~~ 46 (96)
..||+.+- .-.|+|.+..+.+
T Consensus 53 y~YLedtL-~FPF~A~~~~~~~ 73 (146)
T 3urg_A 53 YYYLDDTL-EFPFMGKWKKKSR 73 (146)
T ss_dssp HHHHHHHS-CSSEEEEEEEEET
T ss_pred HHHHHHhc-CCCeEEEEehhhc
Confidence 46999999 6999999998777
No 144
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=20.03 E-value=92 Score=19.78 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=19.1
Q ss_pred ecceeeEEEeecCCCCCCCEEEEEEeeecC
Q 034382 55 VEVGLQATAWVSVGAQIGDEVEVKVEEAHP 84 (96)
Q Consensus 55 ~dl~le~~~~~~~~~~~Gd~v~v~v~~vdP 84 (96)
..=|+. ++.+.++++||.|.+.+.--|.
T Consensus 30 s~GGlF--I~T~~~~~~G~~V~l~l~Lp~~ 57 (117)
T 3cnr_A 30 KGGGIF--VPTPKRYMLGDEVFLLLTLPDS 57 (117)
T ss_dssp TTCEEE--EECCSCCCTTCEEEEEEECTTC
T ss_pred CCCeEE--EeeCCccCCCCEEEEEEEcCCC
Confidence 333444 4455689999999998886443
Done!