BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034383
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 32 EKQQCRVSVCGRFRPSDVAIKIRKKMNRRVEILEIQEHNESNEPADQKPTNEQ 84
+K+ + V R + VA+++ KK+ + EI+ NE + ++ PTNE+
Sbjct: 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEK 288
>pdb|1L7R|A Chain A, Tyr44phe Mutant Of Bacterial Cocaine Esterase Coce
Length = 574
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 69 HNESNEPADQKPTNEQAD 86
HN N PADQ+P +++ D
Sbjct: 409 HNGDNGPADQRPIHDRDD 426
>pdb|1JU3|A Chain A, Bacterial Cocaine Esterase Complex With Transition State
Analog
pdb|1JU4|A Chain A, Bacterial Cocaine Esterase Complex With Product
Length = 583
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 69 HNESNEPADQKPTNEQAD 86
HN N PADQ+P +++ D
Sbjct: 409 HNGDNGPADQRPIHDRDD 426
>pdb|1L7Q|A Chain A, Ser117ala Mutant Of Bacterial Cocaine Esterase Coce
Length = 574
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 69 HNESNEPADQKPTNEQAD 86
HN N PADQ+P +++ D
Sbjct: 409 HNGDNGPADQRPIHDRDD 426
>pdb|3PUI|A Chain A, Cocaine Esterase With Mutations G4c, S10c
Length = 587
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 69 HNESNEPADQKPTNEQAD 86
HN N PADQ+P +++ D
Sbjct: 409 HNGDNGPADQRPIHDRDD 426
>pdb|3I2J|A Chain A, Cocaine Esterase, Wild Type, Without A Ligand
pdb|3I2K|A Chain A, Cocaine Esterase, Wild Type, Bound To A Dtt Adduct
pdb|3PUH|A Chain A, Cocaine Esterase, Wild-Type Biologically Active Dimer
pdb|3PUH|B Chain B, Cocaine Esterase, Wild-Type Biologically Active Dimer
Length = 587
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 69 HNESNEPADQKPTNEQAD 86
HN N PADQ+P +++ D
Sbjct: 409 HNGDNGPADQRPIHDRDD 426
>pdb|3I2I|A Chain A, Cocaine Esterase With Mutation T172r, Bound To Dtt Adduct
Length = 587
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 69 HNESNEPADQKPTNEQAD 86
HN N PADQ+P +++ D
Sbjct: 409 HNGDNGPADQRPIHDRDD 426
>pdb|3I2H|A Chain A, Cocaine Esterase With Mutation L169k, Bound To Dtt Adduct
Length = 587
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 69 HNESNEPADQKPTNEQAD 86
HN N PADQ+P +++ D
Sbjct: 409 HNGDNGPADQRPIHDRDD 426
>pdb|3I2G|A Chain A, Cocaine Esterase With Mutation G173q, Bound To Dtt Adduct
Length = 587
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 69 HNESNEPADQKPTNEQAD 86
HN N PADQ+P +++ D
Sbjct: 409 HNGDNGPADQRPIHDRDD 426
>pdb|3I2F|A Chain A, Cocaine Esterase With Mutations T172r G173Q, BOUND TO DTT
ADDUCT
Length = 587
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 69 HNESNEPADQKPTNEQAD 86
HN N PADQ+P +++ D
Sbjct: 409 HNGDNGPADQRPIHDRDD 426
>pdb|3IDA|A Chain A, Thermostable Cocaine Esterase With Mutations L169k And
G173q, Bound To Dtt Adduct
Length = 587
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 69 HNESNEPADQKPTNEQAD 86
HN N PADQ+P +++ D
Sbjct: 409 HNGDNGPADQRPIHDRDD 426
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,537,300
Number of Sequences: 62578
Number of extensions: 80215
Number of successful extensions: 179
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 13
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)