Query 034384
Match_columns 96
No_of_seqs 116 out of 1050
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 22:15:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 1.2E-37 4.1E-42 197.0 1.6 79 2-80 1-79 (90)
2 1egw_A MADS box transcription 100.0 2.8E-37 9.7E-42 190.6 3.1 74 2-75 1-74 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 2.4E-37 8.2E-42 198.8 0.7 85 1-85 16-100 (100)
4 1hbx_A SRF, serum response fac 100.0 2.1E-36 7.1E-41 192.0 -1.5 78 1-78 10-87 (92)
5 1k6o_B SRF, serum response fac 100.0 1.1E-35 3.8E-40 192.0 -0.0 71 1-71 9-79 (103)
6 2ky6_A Mediator of RNA polymer 76.9 2.3 7.8E-05 28.9 3.3 38 36-73 116-154 (166)
7 3nrf_A APAG protein; structura 66.0 1.2 4E-05 28.3 -0.1 44 11-59 21-64 (106)
8 2dm0_A Tyrosine-protein kinase 47.8 20 0.00069 22.1 3.5 43 33-75 52-105 (125)
9 1blj_A P55 BLK protein tyrosin 43.0 30 0.001 20.7 3.7 44 32-75 49-101 (114)
10 2ekx_A Cytoplasmic tyrosine-pr 41.7 26 0.00087 21.0 3.2 42 33-74 47-99 (110)
11 3hvz_A Uncharacterized protein 41.4 31 0.0011 20.0 3.3 24 45-68 8-32 (78)
12 1lkk_A Human P56 tyrosine kina 40.6 31 0.0011 20.3 3.4 44 32-75 41-94 (105)
13 1m2d_A [2Fe-2S] ferredoxin; th 36.6 29 0.001 21.0 2.8 27 45-72 65-92 (110)
14 4d8k_A Tyrosine-protein kinase 34.5 38 0.0013 21.9 3.3 43 33-75 112-164 (175)
15 1aot_F FYN protein-tyrosine ki 31.7 32 0.0011 20.2 2.4 44 32-75 42-95 (106)
16 1jyr_A Growth factor receptor- 30.4 40 0.0014 19.7 2.7 42 33-74 40-85 (96)
17 2ge9_A Tyrosine-protein kinase 27.8 40 0.0014 20.8 2.4 42 33-74 47-99 (125)
18 2phn_A F420-0:gamma-glutamyl l 26.3 9.8 0.00033 27.4 -0.8 24 34-57 138-161 (254)
19 1nki_A Probable fosfomycin res 26.2 94 0.0032 18.1 3.9 30 44-73 98-127 (135)
20 1rja_A Tyrosine-protein kinase 25.5 1E+02 0.0036 17.8 4.4 43 33-75 40-87 (100)
21 3igm_B PF14_0633 protein; AP2 25.2 24 0.00081 20.9 0.9 31 9-39 23-54 (77)
22 2eo6_A B-cell linker protein; 25.2 86 0.0029 19.6 3.7 44 33-76 62-115 (141)
23 3ov1_A Growth factor receptor- 25.2 57 0.0019 19.8 2.7 42 33-74 43-88 (117)
24 2zvv_Y Cyclin-dependent kinase 24.8 17 0.00058 17.0 0.1 12 15-26 15-26 (26)
25 3p3d_A Nucleoporin 53; structu 24.8 51 0.0017 21.3 2.5 30 38-74 3-32 (132)
26 2lx9_A Ferrous iron transport 24.5 76 0.0026 18.2 3.1 33 25-57 19-51 (83)
27 2dly_A FYN-related kinase; BRK 24.2 1.2E+02 0.0041 18.3 4.1 43 33-75 54-101 (121)
28 2eob_A 1-phosphatidylinositol- 23.9 75 0.0026 19.4 3.2 44 32-75 54-101 (124)
29 3tkz_A Tyrosine-protein phosph 23.4 85 0.0029 18.5 3.3 42 33-74 44-89 (109)
30 2gsb_A RAS GTPase-activating p 22.9 68 0.0023 19.5 2.8 42 33-74 53-98 (119)
31 4fbn_A 1-phosphatidylinositol 22.8 62 0.0021 22.4 2.8 43 33-75 158-203 (246)
32 1npb_A Fosfomycin-resistance p 22.6 91 0.0031 18.4 3.3 30 44-73 101-130 (141)
33 2k5l_A FEOA; structure, NESG, 22.5 1.1E+02 0.0038 17.2 3.6 31 26-56 22-52 (81)
34 2rpa_A Katanin P60 ATPase-cont 22.5 5.9 0.0002 23.5 -2.2 21 29-49 16-36 (78)
35 1i3z_A EWS/FLI1 activated tran 22.5 97 0.0033 18.0 3.4 42 33-74 40-91 (103)
36 2ysx_A Signaling inositol poly 21.9 1.1E+02 0.0039 18.3 3.7 42 33-74 47-98 (119)
37 2k4y_A FEOA-like protein; GFT 21.2 1.2E+02 0.0039 17.4 3.5 31 26-56 25-55 (86)
38 3k2m_A Proto-oncogene tyrosine 20.7 1.4E+02 0.0047 17.6 3.9 43 33-75 41-88 (112)
39 3s9k_A Tyrosine-protein kinase 20.1 1.4E+02 0.0048 17.6 3.8 27 49-75 71-100 (118)
40 2k5f_A Ferrous iron transport 20.0 1.5E+02 0.0053 17.7 4.6 31 26-56 21-51 (105)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.2e-37 Score=197.03 Aligned_cols=79 Identities=48% Similarity=0.733 Sum_probs=75.3
Q ss_pred CcccceeEEecCCCCcccccccccchhhhhhHhhhhccccceEEEEecCCCceeeccCCchHHHHHHhhhcccccccCC
Q 034384 2 AREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVD 80 (96)
Q Consensus 2 gR~ki~i~~I~~~~~R~~tf~kRk~gL~kKa~Els~LC~~~v~liv~~~~g~~~~~~s~~~~~vl~ry~~~s~~~~~~~ 80 (96)
||+||+|++|+|+..|++||+||+.||+|||+|||+||||+||||||+|+|++|+|+|+++++||+||+..++......
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~~ 79 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRT 79 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEEC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987765543
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2.8e-37 Score=190.64 Aligned_cols=74 Identities=50% Similarity=0.785 Sum_probs=70.3
Q ss_pred CcccceeEEecCCCCcccccccccchhhhhhHhhhhccccceEEEEecCCCceeeccCCchHHHHHHhhhcccc
Q 034384 2 AREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKN 75 (96)
Q Consensus 2 gR~ki~i~~I~~~~~R~~tf~kRk~gL~kKa~Els~LC~~~v~liv~~~~g~~~~~~s~~~~~vl~ry~~~s~~ 75 (96)
||+||+|++|+|+..|++||+||+.||+|||+|||+||||+||||||+|+|++|+|+|+++++||+||+..+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998754
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=2.4e-37 Score=198.77 Aligned_cols=85 Identities=40% Similarity=0.576 Sum_probs=80.1
Q ss_pred CCcccceeEEecCCCCcccccccccchhhhhhHhhhhccccceEEEEecCCCceeeccCCchHHHHHHhhhcccccccCC
Q 034384 1 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVD 80 (96)
Q Consensus 1 MgR~ki~i~~I~~~~~R~~tf~kRk~gL~kKa~Els~LC~~~v~liv~~~~g~~~~~~s~~~~~vl~ry~~~s~~~~~~~ 80 (96)
|||+||+|++|+|+..|++||+||+.||||||+|||+||||+||||||+|+|++|+|+|++++.||++|...+....+.+
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~~lw~~cl~ 95 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNLIQACLN 95 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHHHHHHHHT
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCCcHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777777
Q ss_pred CCChh
Q 034384 81 QPSVE 85 (96)
Q Consensus 81 ~~~~e 85 (96)
.|++|
T Consensus 96 ~~~~~ 100 (100)
T 1mnm_A 96 APDDE 100 (100)
T ss_dssp SCCC-
T ss_pred CCCCC
Confidence 77654
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=2.1e-36 Score=192.02 Aligned_cols=78 Identities=33% Similarity=0.489 Sum_probs=72.0
Q ss_pred CCcccceeEEecCCCCcccccccccchhhhhhHhhhhccccceEEEEecCCCceeeccCCchHHHHHHhhhccccccc
Q 034384 1 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLER 78 (96)
Q Consensus 1 MgR~ki~i~~I~~~~~R~~tf~kRk~gL~kKa~Els~LC~~~v~liv~~~~g~~~~~~s~~~~~vl~ry~~~s~~~~~ 78 (96)
|||+||+|++|+|+..|++||+||+.||||||+|||+||||+||||||+|+|++|+|+|++++++|++|........+
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~Gk~Li~~c 87 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTC 87 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHHHHHHHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999977654443333
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=1.1e-35 Score=191.97 Aligned_cols=71 Identities=37% Similarity=0.570 Sum_probs=68.4
Q ss_pred CCcccceeEEecCCCCcccccccccchhhhhhHhhhhccccceEEEEecCCCceeeccCCchHHHHHHhhh
Q 034384 1 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRV 71 (96)
Q Consensus 1 MgR~ki~i~~I~~~~~R~~tf~kRk~gL~kKa~Els~LC~~~v~liv~~~~g~~~~~~s~~~~~vl~ry~~ 71 (96)
|||+||+|++|+|+..|++||+||+.||||||+|||+||||+||||||+|+|++|+|++++++.+|+++..
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~G 79 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 79 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987543
No 6
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=76.94 E-value=2.3 Score=28.92 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=25.5
Q ss_pred hhccccceEEEEecCCCceee-ccCCchHHHHHHhhhcc
Q 034384 36 SVLCDADVALIIFSATGKLFE-YSSSSMKEILEKHRVHS 73 (96)
Q Consensus 36 s~LC~~~v~liv~~~~g~~~~-~~s~~~~~vl~ry~~~s 73 (96)
+.-|++.|.+++|+|+.+.|. |-..+-...++|.+..-
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Vi 154 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVI 154 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHH
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHH
Confidence 345899999999999888775 65544444444444443
No 7
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=66.01 E-value=1.2 Score=28.26 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=35.4
Q ss_pred ecCCCCcccccccccchhhhhhHhhhhccccceEEEEecCCCceeeccC
Q 034384 11 IDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS 59 (96)
Q Consensus 11 I~~~~~R~~tf~kRk~gL~kKa~Els~LC~~~v~liv~~~~g~~~~~~s 59 (96)
+.++.....||.-.-..|.++.-+|+.+| ++.|+|+|+-|....
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~ldT 64 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRLDT 64 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEecc
Confidence 35556667788888889999999999777 999999998776544
No 8
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.83 E-value=20 Score=22.08 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=29.5
Q ss_pred Hhhhhcc--------ccceEEEEecCCCceeeccC---CchHHHHHHhhhcccc
Q 034384 33 EELSVLC--------DADVALIIFSATGKLFEYSS---SSMKEILEKHRVHSKN 75 (96)
Q Consensus 33 ~Els~LC--------~~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~s~~ 75 (96)
+-||+.+ .+....|...++|..+.... +++.++|+.|...+..
T Consensus 52 y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~~~ 105 (125)
T 2dm0_A 52 YTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNAAG 105 (125)
T ss_dssp EEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCCCSSHHHHHHHHTTCCCS
T ss_pred EEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCccCCHHHHHHHhhhCCCC
Confidence 4577776 34555565667777665433 7999999999987643
No 9
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A
Probab=43.02 E-value=30 Score=20.73 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=30.4
Q ss_pred hHhhhhcc------ccceEEEEecCCCceeeccC---CchHHHHHHhhhcccc
Q 034384 32 AEELSVLC------DADVALIIFSATGKLFEYSS---SSMKEILEKHRVHSKN 75 (96)
Q Consensus 32 a~Els~LC------~~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~s~~ 75 (96)
.+-||+.+ .+....|...++|..+.... +++.++|+.|...+..
T Consensus 49 ~y~LSv~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~~ 101 (114)
T 1blj_A 49 AFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKGDG 101 (114)
T ss_dssp CEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEESSHHHHHHHHHHCCSS
T ss_pred CEEEEEEEecCCCCcEEEEEEEEcCCCCEEECCCcccCCHHHHHHHhhhCCCC
Confidence 34577776 24556666666777665443 7999999999988654
No 10
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=41.74 E-value=26 Score=21.01 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=28.3
Q ss_pred Hhhhhcc--------ccceEEEEecCCCceeeccC---CchHHHHHHhhhccc
Q 034384 33 EELSVLC--------DADVALIIFSATGKLFEYSS---SSMKEILEKHRVHSK 74 (96)
Q Consensus 33 ~Els~LC--------~~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~s~ 74 (96)
+-||+.+ .+....|...++|..+.... +++.++|+.|...+.
T Consensus 47 y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 99 (110)
T 2ekx_A 47 YTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDSIPKLIHYHQHNSA 99 (110)
T ss_dssp EEEEECCCCSSCSSCCCEEEECEECTTCCEESSTTCCCSCHHHHHHHHHHSCC
T ss_pred EEEEEEeccccCCCCcEEEEEEEECCCCCEEECCCCccCCHHHHHHHHeeCCC
Confidence 4566665 34455555666777655433 799999999998864
No 11
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=41.37 E-value=31 Score=20.03 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=19.3
Q ss_pred EEEecCCCceeeccC-CchHHHHHH
Q 034384 45 LIIFSATGKLFEYSS-SSMKEILEK 68 (96)
Q Consensus 45 liv~~~~g~~~~~~s-~~~~~vl~r 68 (96)
+.||.|+|....++. ..+.++...
T Consensus 8 i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 8 VFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEECTTSCEEEEETTCBHHHHHHH
T ss_pred EEEECCCCCEEEecCCCCHHHHHHH
Confidence 678999999999988 677777643
No 12
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*
Probab=40.62 E-value=31 Score=20.28 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=29.3
Q ss_pred hHhhhhcc-----c--cceEEEEecCCCceeeccC---CchHHHHHHhhhcccc
Q 034384 32 AEELSVLC-----D--ADVALIIFSATGKLFEYSS---SSMKEILEKHRVHSKN 75 (96)
Q Consensus 32 a~Els~LC-----~--~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~s~~ 75 (96)
.+-||+.+ + +....|...++|..+.... +++.++|+.|...+..
T Consensus 41 ~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LI~~y~~~~~~ 94 (105)
T 1lkk_A 41 SFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASDG 94 (105)
T ss_dssp CEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSSHHHHHHHHHHCCTT
T ss_pred cEEEEEEEcccCCCCcEEEEEEEECCCCCEEECCCceeCCHHHHHHHHhhCCCC
Confidence 34567766 2 3445555556777665443 7999999999988654
No 13
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=36.60 E-value=29 Score=20.95 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=18.1
Q ss_pred EEEecCCCceeeccC-CchHHHHHHhhhc
Q 034384 45 LIIFSATGKLFEYSS-SSMKEILEKHRVH 72 (96)
Q Consensus 45 liv~~~~g~~~~~~s-~~~~~vl~ry~~~ 72 (96)
|+|+ |+|..|..-+ .++.+||+.+...
T Consensus 65 v~V~-P~~~~y~~vt~e~v~~il~~~l~~ 92 (110)
T 1m2d_A 65 VVVY-PDGVWYGQVKPEDVDEIVEKHLKG 92 (110)
T ss_dssp EEEE-TTTEEECSCCGGGHHHHHHHTTTT
T ss_pred EEEE-eCCEEEecCCHHHHHHHHHHHHHC
Confidence 4444 7776665545 6899999987543
No 14
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*
Probab=34.50 E-value=38 Score=21.87 Aligned_cols=43 Identities=16% Similarity=0.063 Sum_probs=29.3
Q ss_pred Hhhhhcc-------ccceEEEEecCCCceeeccC---CchHHHHHHhhhcccc
Q 034384 33 EELSVLC-------DADVALIIFSATGKLFEYSS---SSMKEILEKHRVHSKN 75 (96)
Q Consensus 33 ~Els~LC-------~~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~s~~ 75 (96)
+-||+.+ .+....|...++|..+.... +++.++|+.|...+..
T Consensus 112 y~LSv~~~~~~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~~g 164 (175)
T 4d8k_A 112 FSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASDG 164 (175)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECSSSCEESSTTSEESSHHHHHHHHHHCCTT
T ss_pred EEEEEEeCcccCCCceEEEEEEECCCCCEEECCCCccCCHHHHHHHHhhCCCC
Confidence 3466665 24555565667777665543 7999999999987644
No 15
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Probab=31.74 E-value=32 Score=20.25 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=28.6
Q ss_pred hHhhhhcc-------ccceEEEEecCCCceeeccC---CchHHHHHHhhhcccc
Q 034384 32 AEELSVLC-------DADVALIIFSATGKLFEYSS---SSMKEILEKHRVHSKN 75 (96)
Q Consensus 32 a~Els~LC-------~~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~s~~ 75 (96)
.+=||+.+ .+....|...++|..+.... +++.++|+.|...+..
T Consensus 42 ~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~~ 95 (106)
T 1aot_F 42 AYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAG 95 (106)
T ss_dssp BBCCEEECCBTTTBCCEEECCBEEETTTEEEEETTEEESSHHHHHHHHTTCCTT
T ss_pred CEEEEEEecccCCCCcEEEEEEEEeCCCCEEECCCCccCCHHHHHHHhccCCCC
Confidence 34566664 23344455556777665544 7999999999987543
No 16
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=30.42 E-value=40 Score=19.67 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=27.2
Q ss_pred Hhhhhccccc--eEEEEecCCCceeeccC--CchHHHHHHhhhccc
Q 034384 33 EELSVLCDAD--VALIIFSATGKLFEYSS--SSMKEILEKHRVHSK 74 (96)
Q Consensus 33 ~Els~LC~~~--v~liv~~~~g~~~~~~s--~~~~~vl~ry~~~s~ 74 (96)
+-||+.++-. ...|...++|..+.... +++.++|+.|...+-
T Consensus 40 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~l 85 (96)
T 1jyr_A 40 FSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 85 (96)
T ss_dssp EEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTTSSCS
T ss_pred EEEEEEeCCeEEEEEEEEcCCCCEEECCcccCCHHHHHHHHhhCCC
Confidence 4566666544 33344456676554433 799999999998763
No 17
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}
Probab=27.80 E-value=40 Score=20.79 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=27.3
Q ss_pred Hhhhhcc--------ccceEEEEecCCCceeeccC---CchHHHHHHhhhccc
Q 034384 33 EELSVLC--------DADVALIIFSATGKLFEYSS---SSMKEILEKHRVHSK 74 (96)
Q Consensus 33 ~Els~LC--------~~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~s~ 74 (96)
+-||+.+ .+.-..|...++|..+.... +++.++|+.|...+.
T Consensus 47 y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~~ 99 (125)
T 2ge9_A 47 YTVSVFAKSTGDPQGVIRHYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNSA 99 (125)
T ss_dssp EEEEEEESSSSSTTCEEEEEECEEETTTEEESSTTSCBSSHHHHHHHHHCCCT
T ss_pred EEEEEEeccccCCCCeEEEEEEEEcCCCCEEECCCCcCCCHHHHHHHhhhCCC
Confidence 4566664 23444455556776554433 799999999998764
No 18
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=26.28 E-value=9.8 Score=27.36 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=19.1
Q ss_pred hhhhccccceEEEEecCCCceeec
Q 034384 34 ELSVLCDADVALIIFSATGKLFEY 57 (96)
Q Consensus 34 Els~LC~~~v~liv~~~~g~~~~~ 57 (96)
+|.-.+|++|++||+++.|+++..
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~ 161 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRR 161 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhc
Confidence 466778999999999998866543
No 19
>1nki_A Probable fosfomycin resistance protein; potassium binding loop, manganese binding, transferase; 0.95A {Pseudomonas aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A 1nnr_A
Probab=26.17 E-value=94 Score=18.14 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=23.4
Q ss_pred EEEEecCCCceeeccCCchHHHHHHhhhcc
Q 034384 44 ALIIFSATGKLFEYSSSSMKEILEKHRVHS 73 (96)
Q Consensus 44 ~liv~~~~g~~~~~~s~~~~~vl~ry~~~s 73 (96)
.+.+.+|+|..+.+.+....+.+.+|....
T Consensus 98 ~~~~~DPdG~~iel~~~~~~~~~~~~~~~~ 127 (135)
T 1nki_A 98 SFYFLDPDGHRLEAHVGDLRSRLAACRQAP 127 (135)
T ss_dssp EEEEECTTCCEEEEESCCHHHHHHHHHHSC
T ss_pred EEEEECCCCCEEEEEECCchHHHHHHhcCC
Confidence 456789999999988877777788887643
No 20
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=25.49 E-value=1e+02 Score=17.79 Aligned_cols=43 Identities=28% Similarity=0.202 Sum_probs=29.4
Q ss_pred Hhhhhccc--cceEEEEecCCCceeeccC---CchHHHHHHhhhcccc
Q 034384 33 EELSVLCD--ADVALIIFSATGKLFEYSS---SSMKEILEKHRVHSKN 75 (96)
Q Consensus 33 ~Els~LC~--~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~s~~ 75 (96)
+=||+.++ +....|...++|..+.... +++.++|+.|...+..
T Consensus 40 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~~ 87 (100)
T 1rja_A 40 YVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNYHRAQSLS 87 (100)
T ss_dssp EEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHHHHHCCTT
T ss_pred EEEEEEECCEEEEEEEEEcCCCcEEECCCCccCCHHHHHHHHhhCCCC
Confidence 44666654 3445555556787666544 7999999999988754
No 21
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=25.23 E-value=24 Score=20.95 Aligned_cols=31 Identities=26% Similarity=0.179 Sum_probs=25.4
Q ss_pred EEecCCCCcccccccccchh-hhhhHhhhhcc
Q 034384 9 KKIDNATARQVTFSKRRRGI-FKKAEELSVLC 39 (96)
Q Consensus 9 ~~I~~~~~R~~tf~kRk~gL-~kKa~Els~LC 39 (96)
.+-++.+.|..||+=++-|+ +.+|.+++|-|
T Consensus 23 ~W~e~g~rrsRtF~~k~yGf~~e~Ak~~AIef 54 (77)
T 3igm_B 23 FFYDGASRRSRTFHPKHFNMDKEKARLAAVEF 54 (77)
T ss_dssp EEEETTEEEEEEECCTTHHHHHHHHHHHHHHH
T ss_pred EEecCCeEeeeeechhhcCcCHHHHHHHHHHH
Confidence 45678889999999999994 36888888876
No 22
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}
Probab=25.21 E-value=86 Score=19.62 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=29.2
Q ss_pred HhhhhccccceE--EEEecCCCceeecc-----C---CchHHHHHHhhhccccc
Q 034384 33 EELSVLCDADVA--LIIFSATGKLFEYS-----S---SSMKEILEKHRVHSKNL 76 (96)
Q Consensus 33 ~Els~LC~~~v~--liv~~~~g~~~~~~-----s---~~~~~vl~ry~~~s~~~ 76 (96)
+-||+.++-.|- .|...++|+.|.+. . +++.++|+.|...+...
T Consensus 62 y~LSv~~~~~v~H~~I~~~~~g~~~~l~~~~~~~~~F~sl~eLV~~y~~~~~~l 115 (141)
T 2eo6_A 62 YTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVL 115 (141)
T ss_dssp EEEEEEETTEEEEEEECEETTTTEECSSSCCTTCCCBSSHHHHHHHHHHSCCCC
T ss_pred EEEEEEECCEEEEEEEEEeCCCCEEEEccccCCCCccCCHHHHHHHHhhCCccc
Confidence 456676655443 33334678766654 2 79999999999887654
No 23
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...
Probab=25.15 E-value=57 Score=19.85 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=27.5
Q ss_pred Hhhhhccccc--eEEEEecCCCceeeccC--CchHHHHHHhhhccc
Q 034384 33 EELSVLCDAD--VALIIFSATGKLFEYSS--SSMKEILEKHRVHSK 74 (96)
Q Consensus 33 ~Els~LC~~~--v~liv~~~~g~~~~~~s--~~~~~vl~ry~~~s~ 74 (96)
+-||+.++-. -..|...++|..+.... +++.++|+.|...+-
T Consensus 43 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~eLV~~y~~~~l 88 (117)
T 3ov1_A 43 FSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 88 (117)
T ss_dssp EEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTTTSCS
T ss_pred EEEEEecCCceEEEEEEECCCCeEEECCCCcCCHHHHHHHHhhCCC
Confidence 4566666544 33344456676554444 799999999998864
No 24
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=24.85 E-value=17 Score=17.00 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=8.2
Q ss_pred CCcccccccccc
Q 034384 15 TARQVTFSKRRR 26 (96)
Q Consensus 15 ~~R~~tf~kRk~ 26 (96)
++|...|.+|++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 457777777764
No 25
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=24.82 E-value=51 Score=21.34 Aligned_cols=30 Identities=13% Similarity=0.488 Sum_probs=20.5
Q ss_pred ccccceEEEEecCCCceeeccCCchHHHHHHhhhccc
Q 034384 38 LCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 74 (96)
Q Consensus 38 LC~~~v~liv~~~~g~~~~~~s~~~~~vl~ry~~~s~ 74 (96)
|.+-+-+|+||+ ||......||+.|.+.=.
T Consensus 3 ~~~~e~~VtVFG-------Fp~~~~~~VI~~Fs~~G~ 32 (132)
T 3p3d_A 3 LSNGELAILVFG-------YPETMANQVIAYFQEFGT 32 (132)
T ss_dssp -----CEEEEEC-------CCGGGHHHHHHHHGGGSC
T ss_pred cccCceEEEEEe-------cCHHHHHHHHHHHHhhce
Confidence 345566788887 888888999999988743
No 26
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=24.52 E-value=76 Score=18.25 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=27.5
Q ss_pred cchhhhhhHhhhhccccceEEEEecCCCceeec
Q 034384 25 RRGIFKKAEELSVLCDADVALIIFSATGKLFEY 57 (96)
Q Consensus 25 k~gL~kKa~Els~LC~~~v~liv~~~~g~~~~~ 57 (96)
...+.++-.++-+..|+.|-++-..|-|.+..+
T Consensus 19 ~~~~~rrL~~mGl~pG~~V~Vi~~ap~ggPi~v 51 (83)
T 2lx9_A 19 SPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHI 51 (83)
T ss_dssp CHHHHHHHHHSSCCSSSEEEEEEECTTTCCEEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCCCCCcEEE
Confidence 467888899999999999999999997666543
No 27
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.16 E-value=1.2e+02 Score=18.32 Aligned_cols=43 Identities=23% Similarity=0.148 Sum_probs=29.8
Q ss_pred Hhhhhccccc--eEEEEecCCCceeeccC---CchHHHHHHhhhcccc
Q 034384 33 EELSVLCDAD--VALIIFSATGKLFEYSS---SSMKEILEKHRVHSKN 75 (96)
Q Consensus 33 ~Els~LC~~~--v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~s~~ 75 (96)
+-||+.++-. ...|...++|..+.... +++.++|+.|...+..
T Consensus 54 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~~~ 101 (121)
T 2dly_A 54 FSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSDG 101 (121)
T ss_dssp EEEEEESSSCEEEEEEEECSSSCEEEETTEEESSHHHHHHHHTTCCSS
T ss_pred eEEEEEECCeEEEEEEEEcCCCCEEECCCCccCCHHHHHHHHhhCCCC
Confidence 4566666543 44454556787776654 7999999999988754
No 28
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}
Probab=23.87 E-value=75 Score=19.43 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=25.7
Q ss_pred hHhhhhccccceEEEEecCCCceeeccC----CchHHHHHHhhhcccc
Q 034384 32 AEELSVLCDADVALIIFSATGKLFEYSS----SSMKEILEKHRVHSKN 75 (96)
Q Consensus 32 a~Els~LC~~~v~liv~~~~g~~~~~~s----~~~~~vl~ry~~~s~~ 75 (96)
.+-||+.++-.|-=+....+|..|.... +++.++|+.|...+..
T Consensus 54 ~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~LV~~y~~~~~~ 101 (124)
T 2eob_A 54 SYAITFRARGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALY 101 (124)
T ss_dssp CEEEEEEETTEEEEEEEEESSSCEESSSSCCBSSHHHHHHHHTTSCSS
T ss_pred CEEEEEEeCCeEEEEEEEECCCEEEECCCCcCCCHHHHHHHHhhCCCC
Confidence 3556776654432222222344454332 6899999999987653
No 29
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=23.43 E-value=85 Score=18.47 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=24.6
Q ss_pred HhhhhccccceEEEEecCCCceeec-cC---CchHHHHHHhhhccc
Q 034384 33 EELSVLCDADVALIIFSATGKLFEY-SS---SSMKEILEKHRVHSK 74 (96)
Q Consensus 33 ~Els~LC~~~v~liv~~~~g~~~~~-~s---~~~~~vl~ry~~~s~ 74 (96)
+=||+.++-.|-=+....+|..|.+ .. +++.++|+.|...+.
T Consensus 44 y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~LV~~y~~~~~ 89 (109)
T 3tkz_A 44 FTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHG 89 (109)
T ss_dssp EEEEEEETTEEEEEEEEECSSCEESSSSCCBSSHHHHHHHHHHSTT
T ss_pred EEEEEEECCEEEEEEEEeCCCEEEecCCcccCCHHHHHHHHHhCcC
Confidence 3466666544332222224554543 33 799999999998764
No 30
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.86 E-value=68 Score=19.50 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=27.5
Q ss_pred Hhhhhccc--cceEEEEecCCCceeeccC--CchHHHHHHhhhccc
Q 034384 33 EELSVLCD--ADVALIIFSATGKLFEYSS--SSMKEILEKHRVHSK 74 (96)
Q Consensus 33 ~Els~LC~--~~v~liv~~~~g~~~~~~s--~~~~~vl~ry~~~s~ 74 (96)
+=||+.++ +....|...++|..+.... +++.++|+.|...+-
T Consensus 53 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LI~~y~~~~l 98 (119)
T 2gsb_A 53 YSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQI 98 (119)
T ss_dssp EEEEEECSSCBCCCCEEEETTTEEEESSCCBSCHHHHHHHHTTSCS
T ss_pred eEEEEEECCEEEEEEEEEcCCCCEEECCcccCCHHHHHHHHhhCcc
Confidence 34556553 4455555666776554433 799999999998654
No 31
>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*
Probab=22.82 E-value=62 Score=22.41 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=29.5
Q ss_pred HhhhhccccceEEEEecCCCceeeccC---CchHHHHHHhhhcccc
Q 034384 33 EELSVLCDADVALIIFSATGKLFEYSS---SSMKEILEKHRVHSKN 75 (96)
Q Consensus 33 ~Els~LC~~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~s~~ 75 (96)
+-||++++-.|-=+.+..+|+.|.... +++.++|+.|...+-.
T Consensus 158 y~Lsv~~~~~v~H~~I~~~~~~~~~~~~~F~sL~~Lv~~y~~~p~~ 203 (246)
T 4fbn_A 158 YAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLY 203 (246)
T ss_dssp EEEEEEETTEEEEEEEEEETTEEEETTEEESCHHHHHHHHHHSCSB
T ss_pred EEEEEEeCCCeEEEEEEeCCCEEEeCCCccCCHHHHHHHhCcCCCC
Confidence 457777766655444445566665554 7899999999988653
No 32
>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} SCOP: d.32.1.2
Probab=22.60 E-value=91 Score=18.37 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=23.6
Q ss_pred EEEEecCCCceeeccCCchHHHHHHhhhcc
Q 034384 44 ALIIFSATGKLFEYSSSSMKEILEKHRVHS 73 (96)
Q Consensus 44 ~liv~~~~g~~~~~~s~~~~~vl~ry~~~s 73 (96)
.+.+.+|+|..+.+.+......+..|...+
T Consensus 101 ~~~~~DPdG~~iel~~~~~~~~l~~~~~~~ 130 (141)
T 1npb_A 101 SFYFLDPDGHKLELHVGSLAARLAACREKP 130 (141)
T ss_dssp EEEEECTTCCEEEEEECCHHHHHHHHHHSC
T ss_pred EEEEECCCCCEEEEEECchhhhHHHhccCC
Confidence 456789999999888877787888877754
No 33
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=22.54 E-value=1.1e+02 Score=17.17 Aligned_cols=31 Identities=3% Similarity=0.188 Sum_probs=26.1
Q ss_pred chhhhhhHhhhhccccceEEEEecCCCceee
Q 034384 26 RGIFKKAEELSVLCDADVALIIFSATGKLFE 56 (96)
Q Consensus 26 ~gL~kKa~Els~LC~~~v~liv~~~~g~~~~ 56 (96)
..+.++-.++-+..|++|-++-..|-|.+..
T Consensus 22 ~~~~~rL~~lGl~pG~~v~V~~~~p~~gpi~ 52 (81)
T 2k5l_A 22 GALKRRIMDMGITRGCEIYIRKVAPLGDPIQ 52 (81)
T ss_dssp SHHHHHHHHHTCCTTCEEEEEEECTTSCCEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEeCCCCCCEE
Confidence 5688899999999999999998888665544
No 34
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.53 E-value=5.9 Score=23.53 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.5
Q ss_pred hhhhHhhhhccccceEEEEec
Q 034384 29 FKKAEELSVLCDADVALIIFS 49 (96)
Q Consensus 29 ~kKa~Els~LC~~~v~liv~~ 49 (96)
.++|+|.+.+++=|.+++.|.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~ 36 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ 36 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHH
Confidence 589999999999998888776
No 35
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=22.50 E-value=97 Score=17.97 Aligned_cols=42 Identities=14% Similarity=0.011 Sum_probs=27.5
Q ss_pred Hhhhhccccc--eEEEEecCCCceeecc-----C---CchHHHHHHhhhccc
Q 034384 33 EELSVLCDAD--VALIIFSATGKLFEYS-----S---SSMKEILEKHRVHSK 74 (96)
Q Consensus 33 ~Els~LC~~~--v~liv~~~~g~~~~~~-----s---~~~~~vl~ry~~~s~ 74 (96)
+-||+.++-. ...|...++|..+... . +++.++|+.|...+.
T Consensus 40 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~~LV~~y~~~~~ 91 (103)
T 1i3z_A 40 LCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQELVSKYGKPGQ 91 (103)
T ss_dssp EEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHHHHHHTTSSSS
T ss_pred EEEEEEECCEEEEEEEEECCCCeEEEeccCCCCCcccCCHHHHHHHHhhCCC
Confidence 4566666543 4444445677766542 2 799999999998753
No 36
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=21.86 E-value=1.1e+02 Score=18.33 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=27.8
Q ss_pred Hhhhhccccc--eEEEEecCCCceeecc-------C-CchHHHHHHhhhccc
Q 034384 33 EELSVLCDAD--VALIIFSATGKLFEYS-------S-SSMKEILEKHRVHSK 74 (96)
Q Consensus 33 ~Els~LC~~~--v~liv~~~~g~~~~~~-------s-~~~~~vl~ry~~~s~ 74 (96)
+=||+.++-. ...|...++|..+... . +++.++|+.|...+.
T Consensus 47 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~eLV~~y~~~~~ 98 (119)
T 2ysx_A 47 YALCVLYRNCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFYKKENM 98 (119)
T ss_dssp EEEEEECSSCEEEEEEEECTTSCEEECCSCSSSCCCBSSHHHHHHHTTSSSS
T ss_pred EEEEEEECCEEEEEEEEEcCCCCEEEeccCCcCCcccCCHHHHHHHHhhCCC
Confidence 4466666543 4445455677766543 2 789999999998764
No 37
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=21.20 E-value=1.2e+02 Score=17.36 Aligned_cols=31 Identities=6% Similarity=0.147 Sum_probs=26.0
Q ss_pred chhhhhhHhhhhccccceEEEEecCCCceee
Q 034384 26 RGIFKKAEELSVLCDADVALIIFSATGKLFE 56 (96)
Q Consensus 26 ~gL~kKa~Els~LC~~~v~liv~~~~g~~~~ 56 (96)
..+.++-.++-+..|++|.++-.+|-|.+..
T Consensus 25 ~~~~~rL~~mGl~pG~~V~V~~~~p~~gpi~ 55 (86)
T 2k4y_A 25 SKVRRKIMDMGIVRGTEIYIEGKAPMGDPIA 55 (86)
T ss_dssp SSHHHHHHHHTCCTTCEEEEEEECTTSCSEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEeCCCCCCEE
Confidence 5688899999999999999998888655544
No 38
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A
Probab=20.65 E-value=1.4e+02 Score=17.58 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=28.3
Q ss_pred Hhhhhccccc--eEEEEecCCCceeeccC---CchHHHHHHhhhcccc
Q 034384 33 EELSVLCDAD--VALIIFSATGKLFEYSS---SSMKEILEKHRVHSKN 75 (96)
Q Consensus 33 ~Els~LC~~~--v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~s~~ 75 (96)
+-||+.++-. ...|...++|..+.... +++.++|+.|...+..
T Consensus 41 y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~~~ 88 (112)
T 3k2m_A 41 RSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVADG 88 (112)
T ss_dssp EEEEEEETTEEEEEEEEECTTSCEESSTTCCBSSHHHHHHHHHHCCTT
T ss_pred EEEEEEeCCcEEEEEEEECCCCcEEECCCCeECCHHHHHHHHhhCCCC
Confidence 3466666544 44444557777665433 7999999999987543
No 39
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B
Probab=20.14 E-value=1.4e+02 Score=17.60 Aligned_cols=27 Identities=7% Similarity=0.235 Sum_probs=20.1
Q ss_pred cCCCceeeccC---CchHHHHHHhhhcccc
Q 034384 49 SATGKLFEYSS---SSMKEILEKHRVHSKN 75 (96)
Q Consensus 49 ~~~g~~~~~~s---~~~~~vl~ry~~~s~~ 75 (96)
.++|..+.... +++.++|+.|...+..
T Consensus 71 ~~~g~~~~~~~~~F~sl~~LV~~y~~~~~~ 100 (118)
T 3s9k_A 71 DSPKRYYVAEKYVFDSIPLLIQYHQYNGGG 100 (118)
T ss_dssp CSSCCEEEECSCCCSCHHHHHHHHHHCCTT
T ss_pred CCCCCEEECCCcccCCHHHHHHHheeCCCC
Confidence 56677665443 7999999999988753
No 40
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=20.05 E-value=1.5e+02 Score=17.75 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=26.0
Q ss_pred chhhhhhHhhhhccccceEEEEecCCCceee
Q 034384 26 RGIFKKAEELSVLCDADVALIIFSATGKLFE 56 (96)
Q Consensus 26 ~gL~kKa~Els~LC~~~v~liv~~~~g~~~~ 56 (96)
..+.++-.++-+.-|++|.++-..|-|.+..
T Consensus 21 ~~l~rrL~~lGl~pG~~V~Vv~~~P~ggpi~ 51 (105)
T 2k5f_A 21 PAVRRRLMDLGLVRGAKLKVLRFAPLGDPIE 51 (105)
T ss_dssp HHHHHHHHHHTCSTTCEEEEEEECSSSCSEE
T ss_pred HHHHHHHHHcCCCCCCEEEEEEECCCCCCEE
Confidence 5788899999999999999998888665544
Done!