Query 034385
Match_columns 96
No_of_seqs 104 out of 113
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 22:16:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034385.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034385hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pf5a1 d.169.1.4 (A:1-95) TSG 6.1 69 0.005 19.3 0.5 15 78-92 42-56 (95)
2 d1ixva_ d.211.1.1 (A:) 26S pro 5.9 82 0.006 18.7 0.8 11 63-73 2-12 (229)
3 d1b12a_ b.87.1.2 (A:) Type 1 s 5.5 46 0.0034 21.6 -0.7 13 79-91 202-214 (247)
4 d1n11a_ d.211.1.1 (A:) Ankyrin 4.4 1E+02 0.0076 19.8 0.5 10 62-71 1-10 (408)
5 d2gycn1 b.34.5.6 (N:1-114) Rib 4.2 57 0.0041 20.7 -1.0 20 48-68 59-78 (114)
6 d2cp8a1 a.5.2.1 (A:8-48) Migra 3.9 98 0.0071 16.6 0.0 8 51-58 8-15 (41)
7 d1k1aa_ d.211.1.1 (A:) bcl-3 { 3.5 1.4E+02 0.01 16.5 0.5 12 62-73 4-15 (228)
8 d2j9ga2 c.30.1.1 (A:1-114) Bio 3.4 3E+02 0.022 16.7 2.2 32 59-91 57-88 (114)
9 d2zjrm1 b.34.5.6 (M:2-109) Rib 3.3 68 0.005 20.1 -1.2 20 48-68 66-85 (108)
10 d2ovrb1 a.158.1.1 (B:2263-2364 2.6 3.8E+02 0.027 14.3 1.8 26 48-73 19-44 (102)
No 1
>d2pf5a1 d.169.1.4 (A:1-95) TSG-6, Link module {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.08 E-value=69 Score=19.25 Aligned_cols=15 Identities=20% Similarity=0.793 Sum_probs=12.3
Q ss_pred hcccccccccccCcc
Q 034385 78 LSISQCGYGWLPEAC 92 (96)
Q Consensus 78 Ls~~s~s~~~Lsqg~ 92 (96)
.+.+-.++|||.+|.
T Consensus 42 ~G~~~C~~GWl~d~~ 56 (95)
T d2pf5a1 42 IGFHVCAAGWMAKGR 56 (95)
T ss_dssp TTCCCCSCEECGGGE
T ss_pred cCcccccccccCCCe
Confidence 467888999999875
No 2
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.89 E-value=82 Score=18.68 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=7.2
Q ss_pred cchhhHHHHHH
Q 034385 63 LPYHTATASAL 73 (96)
Q Consensus 63 lPlHsAvAsAr 73 (96)
.|||.|+....
T Consensus 2 ~pLh~A~~~g~ 12 (229)
T d1ixva_ 2 YPLHQACMENE 12 (229)
T ss_dssp CHHHHHHHHTC
T ss_pred HhHHHHHHcCC
Confidence 47777777643
No 3
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=5.52 E-value=46 Score=21.58 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=9.1
Q ss_pred cccccccccccCc
Q 034385 79 SISQCGYGWLPEA 91 (96)
Q Consensus 79 s~~s~s~~~Lsqg 91 (96)
|.|||-||-+|+.
T Consensus 202 S~DSR~wG~Vp~~ 214 (247)
T d1b12a_ 202 SADSRYWGFVPEA 214 (247)
T ss_dssp CCCHHHHCCEEGG
T ss_pred CccccccCcCCHH
Confidence 6677777777764
No 4
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.36 E-value=1e+02 Score=19.78 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=6.2
Q ss_pred ccchhhHHHH
Q 034385 62 MLPYHTATAS 71 (96)
Q Consensus 62 llPlHsAvAs 71 (96)
|-|||.|+..
T Consensus 1 ~TpL~~Aa~~ 10 (408)
T d1n11a_ 1 LTPLHVASFM 10 (408)
T ss_dssp CCHHHHHHHH
T ss_pred CChHHHHHHC
Confidence 4577777653
No 5
>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}
Probab=4.21 E-value=57 Score=20.69 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=14.1
Q ss_pred hhcchhhhhhhhhhccchhhH
Q 034385 48 ALRSPVEMSFCVESMLPYHTA 68 (96)
Q Consensus 48 ~~R~p~el~~cveSllPlHsA 68 (96)
+.|..+ -|.+||-..||||-
T Consensus 59 tvRki~-~GvGVEr~fpl~SP 78 (114)
T d2gycn1 59 TVRKIS-NGEGVERVFQTHSP 78 (114)
T ss_dssp CCBCCC-CCSSSCCCCCCCSS
T ss_pred EEEEec-CCccEEEEEEeCCC
Confidence 345543 35579999999984
No 6
>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.88 E-value=98 Score=16.63 Aligned_cols=8 Identities=50% Similarity=1.016 Sum_probs=6.1
Q ss_pred chhhhhhh
Q 034385 51 SPVEMSFC 58 (96)
Q Consensus 51 ~p~el~~c 58 (96)
..+|||||
T Consensus 8 ~L~EMGF~ 15 (41)
T d2cp8a1 8 HLFEMGFC 15 (41)
T ss_dssp HHHHHTCC
T ss_pred HHHHhCcc
Confidence 35788888
No 7
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.49 E-value=1.4e+02 Score=16.51 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=8.6
Q ss_pred ccchhhHHHHHH
Q 034385 62 MLPYHTATASAL 73 (96)
Q Consensus 62 llPlHsAvAsAr 73 (96)
.-|||.|+....
T Consensus 4 ~TpLh~A~~~g~ 15 (228)
T d1k1aa_ 4 DTPLHIAVVQGN 15 (228)
T ss_dssp CCHHHHHHHTTC
T ss_pred ccHHHHHHHcCC
Confidence 568998886543
No 8
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.38 E-value=3e+02 Score=16.67 Aligned_cols=32 Identities=34% Similarity=0.497 Sum_probs=28.0
Q ss_pred hhhccchhhHHHHHHhhhhhcccccccccccCc
Q 034385 59 VESMLPYHTATASALSTSLLSISQCGYGWLPEA 91 (96)
Q Consensus 59 veSllPlHsAvAsArltS~Ls~~s~s~~~Lsqg 91 (96)
.++.|-...-+..|+-+-+-.+.. .||.|||.
T Consensus 57 ~~sYl~~~~Ii~~A~~~~~dAiHP-GyGFLSEn 88 (114)
T d2j9ga2 57 VKSYLNIPAIISAAEITGAVAIHP-GYGFLSEN 88 (114)
T ss_dssp GGTTTCHHHHHHHHHHHTCSEEEC-CSSTTTTC
T ss_pred hhhhcCHHHHHHHHHHhCCceeec-chhhhhhh
Confidence 577888888899999999999998 89999985
No 9
>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}
Probab=3.27 E-value=68 Score=20.11 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=14.2
Q ss_pred hhcchhhhhhhhhhccchhhH
Q 034385 48 ALRSPVEMSFCVESMLPYHTA 68 (96)
Q Consensus 48 ~~R~p~el~~cveSllPlHsA 68 (96)
+.|.-++ |.+||=..||||-
T Consensus 66 tvRki~~-g~GVEr~fpl~SP 85 (108)
T d2zjrm1 66 TVRKISF-GEGVERVFPFASP 85 (108)
T ss_dssp EEEEEET-TEEEEEEEETTCT
T ss_pred EEEEEec-CccEEEEEEcCCC
Confidence 4465443 5579999999984
No 10
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.56 E-value=3.8e+02 Score=14.29 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=20.7
Q ss_pred hhcchhhhhhhhhhccchhhHHHHHH
Q 034385 48 ALRSPVEMSFCVESMLPYHTATASAL 73 (96)
Q Consensus 48 ~~R~p~el~~cveSllPlHsAvAsAr 73 (96)
+...|-|+...+-+.||..+....++
T Consensus 19 i~~LP~Eil~~Ils~Ld~~dL~~~~~ 44 (102)
T d2ovrb1 19 ISLLPKELALYVLSFLEPKDLLQAAQ 44 (102)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTT
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHHHH
Confidence 56789999878999999988765554
Done!