BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034386
MALRRFFGFSDGELMRSDAKPCSRLMRQTAGIFTVGGALGFWVLCRLHYGPRVTVPRSLR
WAGCGAVSVSSTTALLVRLFSPECEPQNIAAYDRGK

High Scoring Gene Products

Symbol, full name Information P value
AT1G57540 protein from Arabidopsis thaliana 1.4e-41

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034386
        (96 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2027544 - symbol:AT1G57540 "AT1G57540" species...   441  1.4e-41   1


>TAIR|locus:2027544 [details] [associations]
            symbol:AT1G57540 "AT1G57540" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0000394 "RNA splicing, via endonucleolytic
            cleavage and ligation" evidence=RCA] [GO:0006661
            "phosphatidylinositol biosynthetic process" evidence=RCA]
            [GO:0009086 "methionine biosynthetic process" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC079733 EMBL:BT004691
            EMBL:AK117115 IPI:IPI00532817 PIR:C96609 RefSeq:NP_001077732.1
            RefSeq:NP_564723.1 RefSeq:NP_974042.1 UniGene:At.42718
            STRING:Q9FVU7 PRIDE:Q9FVU7 EnsemblPlants:AT1G57540.1
            EnsemblPlants:AT1G57540.2 EnsemblPlants:AT1G57540.3 GeneID:842129
            KEGG:ath:AT1G57540 TAIR:At1g57540 eggNOG:NOG314857
            HOGENOM:HOG000237720 InParanoid:Q9FVU7 OMA:HYGPRIT PhylomeDB:Q9FVU7
            ProtClustDB:CLSN2688886 Genevestigator:Q9FVU7 Uniprot:Q9FVU7
        Length = 103

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 81/96 (84%), Positives = 91/96 (94%)

Query:     1 MALRRFFGFSDGELMRSDAKPCSRLMRQTAGIFTVGGALGFWVLCRLHYGPRVTVPRSLR 60
             MALR+  G+S+G+LMRSDAKPCSRLM+QTA IFTVGGALGFWVLCRLHYGPR+TVPRSLR
Sbjct:     1 MALRQKLGWSEGDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLR 60

Query:    61 WAGCGAVSVSSTTALLVRLFSPECEPQNIAAYDRGK 96
             WAGCGA+SVS++TA+LVRLFSPECEPQNIAAYD  K
Sbjct:    61 WAGCGALSVSTSTAMLVRLFSPECEPQNIAAYDNIK 96


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.140   0.454    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        96   0.00091  102 3  11 22  0.44    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  117 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.32u 0.13s 9.45t   Elapsed:  00:00:01
  Total cpu time:  9.32u 0.13s 9.45t   Elapsed:  00:00:01
  Start:  Fri May 10 23:14:18 2013   End:  Fri May 10 23:14:19 2013

Back to top