Query 034386
Match_columns 96
No_of_seqs 14 out of 16
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 12:54:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12597 DUF3767: Protein of u 92.6 0.061 1.3E-06 37.8 1.3 54 15-75 32-85 (118)
2 cd03381 PAP2_glucose_6_phospha 47.8 15 0.00031 28.4 2.0 38 2-39 192-230 (235)
3 PF08560 DUF1757: Protein of u 47.3 18 0.00039 26.6 2.4 75 4-79 4-88 (155)
4 TIGR03643 conserved hypothetic 41.9 7.5 0.00016 26.4 -0.3 22 2-23 18-42 (72)
5 PRK13453 F0F1 ATP synthase sub 39.3 9.1 0.0002 27.3 -0.2 16 26-41 1-16 (173)
6 PF06522 B12D: NADH-ubiquinone 39.1 19 0.00041 23.1 1.3 30 31-60 11-41 (73)
7 PF03302 VSP: Giardia variant- 37.6 9.6 0.00021 30.9 -0.3 17 30-46 375-394 (397)
8 TIGR00765 yihY_not_rbn YihY fa 34.4 25 0.00055 25.9 1.5 33 47-81 181-213 (259)
9 PF04046 PSP: PSP; InterPro: 32.9 23 0.0005 22.2 0.9 12 2-13 8-19 (48)
10 PF10985 DUF2805: Protein of u 31.7 14 0.00029 25.2 -0.3 23 2-24 17-42 (73)
11 PRK02237 hypothetical protein; 29.5 38 0.00083 24.4 1.7 45 29-83 11-55 (109)
12 PF02694 UPF0060: Uncharacteri 27.7 38 0.00082 24.3 1.4 42 28-77 9-50 (107)
13 smart00581 PSP proline-rich do 26.9 33 0.00072 22.0 0.9 12 2-13 12-23 (54)
14 PF00770 Peptidase_C5: Adenovi 26.4 14 0.00031 28.8 -1.0 24 7-30 54-77 (183)
15 PF12732 YtxH: YtxH-like prote 25.9 36 0.00077 21.2 0.9 26 63-88 2-27 (74)
16 PF14813 NADH_B2: NADH dehydro 25.8 90 0.0019 20.8 2.8 39 11-51 5-43 (71)
17 PHA01082 putative transcriptio 24.9 44 0.00094 25.1 1.3 43 3-51 44-87 (133)
18 PF12292 DUF3624: Protein of u 24.7 55 0.0012 22.4 1.7 26 20-46 16-41 (77)
19 PF04081 DNA_pol_delta_4: DNA 22.5 34 0.00075 25.0 0.4 16 47-62 75-90 (124)
20 smart00157 PRP Major prion pro 20.9 38 0.00082 27.2 0.4 33 23-55 86-118 (217)
No 1
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=92.64 E-value=0.061 Score=37.83 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=40.9
Q ss_pred cccCCchhHHHHHhhhhhhhccchhhHHHHHHhhcCCCCCcccchhhhhcccchhhhhhhh
Q 034386 15 MRSDAKPCSRLMRQTAGIFTVGGALGFWVLCRLHYGPRVTVPRSLRWAGCGAVSVSSTTAL 75 (96)
Q Consensus 15 MR~~akPCsrlMr~tA~ifsvGGal~fwvlcRlhyGpriT~prslRwa~cGAv~~ss~~al 75 (96)
-+-...||.| .+.|.+|++|+++-.+.=|..+ .+.++..|++.+.+.+|+++-.
T Consensus 32 ~~~~~iPCfR----~slL~Gi~~G~~vG~~~fl~~~---~~~~A~nwavgsF~l~s~~~we 85 (118)
T PF12597_consen 32 RNVHKIPCFR----DSLLYGIAGGFGVGGLRFLFTS---NPRKAANWAVGSFFLGSLGSWE 85 (118)
T ss_pred hHHhcCCcHH----HHHHHHHHHHHHHHhhhhcccC---CCccchhhhhHHHHHHHHHHHH
Confidence 3445679997 4778888888887776555544 6889999999999998887643
No 2
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=47.76 E-value=15 Score=28.40 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=32.5
Q ss_pred hhhhhhcC-CCCcccccCCchhHHHHHhhhhhhhccchh
Q 034386 2 ALRRFFGF-SDGELMRSDAKPCSRLMRQTAGIFTVGGAL 39 (96)
Q Consensus 2 ~lr~~~g~-sdgevMR~~akPCsrlMr~tA~ifsvGGal 39 (96)
++++++.| .|-|-||.|.+|=.-|+|.+..+|++|=|+
T Consensus 192 s~~~a~kwc~~p~~~~~~ttp~~~l~r~~g~l~gl~la~ 230 (235)
T cd03381 192 SLEKAFKWCERPEWVHIDTTPFASLLRNLGTLLGLGLAL 230 (235)
T ss_pred hHHHHHhccCCCceECCCCchHHHHHHHhhhHHHHHHhc
Confidence 46777777 466899999999999999999999888664
No 3
>PF08560 DUF1757: Protein of unknown function (DUF1757); InterPro: IPR013869 This entry shows proteins that are about 150 amino acids in length and have no known function.
Probab=47.34 E-value=18 Score=26.60 Aligned_cols=75 Identities=21% Similarity=0.204 Sum_probs=51.7
Q ss_pred hhhhcCC-CCcccccCCchhHHHHHhh----hhhhhccchhh-HHHHHHhhcCCC----CCcccchhhhhcccchhhhhh
Q 034386 4 RRFFGFS-DGELMRSDAKPCSRLMRQT----AGIFTVGGALG-FWVLCRLHYGPR----VTVPRSLRWAGCGAVSVSSTT 73 (96)
Q Consensus 4 r~~~g~s-dgevMR~~akPCsrlMr~t----A~ifsvGGal~-fwvlcRlhyGpr----iT~prslRwa~cGAv~~ss~~ 73 (96)
+.|+|++ .+|.|..-..|...++-|. +-+.++=|++. .++ .+++..|+ ...+|..|-+.-|++.+....
T Consensus 4 ~N~~~~~~~~~~l~~iP~P~~el~iHvt~k~~q~gs~lGsl~~~Pi-~~~~~~~~~~~~~~~~~~~~~~~~G~l~G~~~g 82 (155)
T PF08560_consen 4 KNFSGFHLSDEELQDIPNPKTELTIHVTFKGAQAGSFLGSLIVGPI-YRLLKQPRLNPKELTNRFVKGGRNGALAGAVLG 82 (155)
T ss_pred HHhhCCccCHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHhCccccHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4555553 2345667778888887664 44444445555 444 67777777 567899999999999999988
Q ss_pred hhhHHh
Q 034386 74 ALLVRL 79 (96)
Q Consensus 74 allvrl 79 (96)
|.+...
T Consensus 83 p~m~~~ 88 (155)
T PF08560_consen 83 PVMTYA 88 (155)
T ss_pred HHHHHH
Confidence 887654
No 4
>TIGR03643 conserved hypothetical protein TIGR03643. This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies.
Probab=41.94 E-value=7.5 Score=26.41 Aligned_cols=22 Identities=45% Similarity=0.797 Sum_probs=17.0
Q ss_pred hhhhhhcCCCCcc---cccCCchhH
Q 034386 2 ALRRFFGFSDGEL---MRSDAKPCS 23 (96)
Q Consensus 2 ~lr~~~g~sdgev---MR~~akPCs 23 (96)
++.+.||+||.|| ||.+-||-|
T Consensus 18 aI~~~fGL~E~eVi~lMR~~lk~~S 42 (72)
T TIGR03643 18 AIEQQFGLSEKEVIKLMRQNLKPSS 42 (72)
T ss_pred HHHHHHCCCHHHHHHHHHhhcChhH
Confidence 4678899999986 677777665
No 5
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=39.28 E-value=9.1 Score=27.28 Aligned_cols=16 Identities=44% Similarity=0.719 Sum_probs=10.7
Q ss_pred HHhhhhhhhccchhhH
Q 034386 26 MRQTAGIFTVGGALGF 41 (96)
Q Consensus 26 Mr~tA~ifsvGGal~f 41 (96)
|..||.+|-.|.++++
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (173)
T PRK13453 1 MTETANLFVLGAAGGV 16 (173)
T ss_pred CchHHHHHHHHhhcCC
Confidence 5567777877766543
No 6
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=39.09 E-value=19 Score=23.10 Aligned_cols=30 Identities=27% Similarity=0.196 Sum_probs=24.0
Q ss_pred hhhhccchhhHHHHHH-hhcCCCCCcccchh
Q 034386 31 GIFTVGGALGFWVLCR-LHYGPRVTVPRSLR 60 (96)
Q Consensus 31 ~ifsvGGal~fwvlcR-lhyGpriT~prslR 60 (96)
++.++|.+++.+.+.| +...|.+.+-|.-|
T Consensus 11 ~~vg~a~~~a~~~~~r~l~~~PdV~~~k~~~ 41 (73)
T PF06522_consen 11 VIVGVAVGGATFYLYRLLLTNPDVRWNKKNR 41 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 4566777778888888 66999999888877
No 7
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=37.56 E-value=9.6 Score=30.93 Aligned_cols=17 Identities=53% Similarity=1.300 Sum_probs=11.4
Q ss_pred hhhhhccchhhH---HHHHH
Q 034386 30 AGIFTVGGALGF---WVLCR 46 (96)
Q Consensus 30 A~ifsvGGal~f---wvlcR 46 (96)
|.|.-|||-.+| |+|||
T Consensus 375 avvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 375 AVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred hhHHHHHHHHHHHhhheeec
Confidence 445667776665 77877
No 8
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=34.45 E-value=25 Score=25.93 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=24.1
Q ss_pred hhcCCCCCcccchhhhhcccchhhhhhhhhHHhcC
Q 034386 47 LHYGPRVTVPRSLRWAGCGAVSVSSTTALLVRLFS 81 (96)
Q Consensus 47 lhyGpriT~prslRwa~cGAv~~ss~~allvrlfS 81 (96)
.+++|+..+| .||+..||+.++..--+....||
T Consensus 181 Y~~~P~~~~~--~r~~~~Ga~~a~v~w~~~~~~f~ 213 (259)
T TIGR00765 181 YTIVPNKKVK--HRHAFVGAFFAAVLFELAKWLFT 213 (259)
T ss_pred HHhcCCceee--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588987764 69999999988776655555554
No 9
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=32.89 E-value=23 Score=22.18 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=10.9
Q ss_pred hhhhhhcCCCCc
Q 034386 2 ALRRFFGFSDGE 13 (96)
Q Consensus 2 ~lr~~~g~sdge 13 (96)
.||++||+++++
T Consensus 8 ~LR~ALg~~~~~ 19 (48)
T PF04046_consen 8 ELREALGMQEND 19 (48)
T ss_pred HHHHHcCCCCCC
Confidence 489999999998
No 10
>PF10985 DUF2805: Protein of unknown function (DUF2805); InterPro: IPR019882 This entry represents an uncharacterised bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae O1 biovar eltor str. N16961 has three identical copies.
Probab=31.74 E-value=14 Score=25.20 Aligned_cols=23 Identities=48% Similarity=0.768 Sum_probs=17.7
Q ss_pred hhhhhhcCCCCcc---cccCCchhHH
Q 034386 2 ALRRFFGFSDGEL---MRSDAKPCSR 24 (96)
Q Consensus 2 ~lr~~~g~sdgev---MR~~akPCsr 24 (96)
++...||+||.|| ||..-||-|=
T Consensus 17 aI~~qfGl~E~eVi~lMR~~Lk~~sf 42 (73)
T PF10985_consen 17 AIERQFGLSEKEVIKLMRKELKPSSF 42 (73)
T ss_pred HHHHHHCCCHHHHHHHHHhhcChhHH
Confidence 4567899999986 7777777663
No 11
>PRK02237 hypothetical protein; Provisional
Probab=29.53 E-value=38 Score=24.42 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=35.2
Q ss_pred hhhhhhccchhhHHHHHHhhcCCCCCcccchhhhhcccchhhhhhhhhHHhcCCC
Q 034386 29 TAGIFTVGGALGFWVLCRLHYGPRVTVPRSLRWAGCGAVSVSSTTALLVRLFSPE 83 (96)
Q Consensus 29 tA~ifsvGGal~fwvlcRlhyGpriT~prslRwa~cGAv~~ss~~allvrlfSpe 83 (96)
.|+++=|||+..+|.--|.+- |.=|...|+++-..-.-+++ +.|+
T Consensus 11 laalaEI~Gcyl~w~wlR~~k--------s~~~~~pg~~~L~lfg~llT--l~p~ 55 (109)
T PRK02237 11 LAALAEIGGCYLPWLWLREGK--------SAWWLLPGALSLALFGWLLT--LQPD 55 (109)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--------chhHHHHHHHHHHHHHHHHh--cCCc
Confidence 478889999999999999763 56688889888777766666 4553
No 12
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=27.70 E-value=38 Score=24.33 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=31.3
Q ss_pred hhhhhhhccchhhHHHHHHhhcCCCCCcccchhhhhcccchhhhhhhhhH
Q 034386 28 QTAGIFTVGGALGFWVLCRLHYGPRVTVPRSLRWAGCGAVSVSSTTALLV 77 (96)
Q Consensus 28 ~tA~ifsvGGal~fwvlcRlhyGpriT~prslRwa~cGAv~~ss~~allv 77 (96)
..||+.=|||+..+|.--|.+ +|.=|...|+++-..-.-+++
T Consensus 9 ~lAalaEIgG~yl~W~wlR~~--------k~~~~~~~G~~~L~lfg~l~T 50 (107)
T PF02694_consen 9 VLAALAEIGGCYLVWLWLREG--------KSPWWLLPGALSLALFGWLLT 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHCC--------CCeeeHhhHHHHHHHHHHHhh
Confidence 357888999999999999987 455677777776655444444
No 13
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=26.89 E-value=33 Score=22.00 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=10.4
Q ss_pred hhhhhhcCCCCc
Q 034386 2 ALRRFFGFSDGE 13 (96)
Q Consensus 2 ~lr~~~g~sdge 13 (96)
.||++||.++++
T Consensus 12 ~LR~ALG~~~~~ 23 (54)
T smart00581 12 ELREALGLPPGQ 23 (54)
T ss_pred HHHHHcCCCCCC
Confidence 489999999985
No 14
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=26.43 E-value=14 Score=28.80 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=10.7
Q ss_pred hcCCCCcccccCCchhHHHHHhhh
Q 034386 7 FGFSDGELMRSDAKPCSRLMRQTA 30 (96)
Q Consensus 7 ~g~sdgevMR~~akPCsrlMr~tA 30 (96)
|||||.+++.--.--=.+|+|.||
T Consensus 54 fGfsd~~L~qiY~FeYe~llrRSA 77 (183)
T PF00770_consen 54 FGFSDQKLKQIYQFEYEGLLRRSA 77 (183)
T ss_dssp T---HHHHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHh
Confidence 788888887644444445555554
No 15
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=25.86 E-value=36 Score=21.17 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=20.0
Q ss_pred hcccchhhhhhhhhHHhcCCCCccch
Q 034386 63 GCGAVSVSSTTALLVRLFSPECEPQN 88 (96)
Q Consensus 63 ~cGAv~~ss~~allvrlfSpeCepqN 88 (96)
..|++.++.+-+.+.-||.|+--.+.
T Consensus 2 ~~g~l~Ga~~Ga~~glL~aP~sG~e~ 27 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFAPKSGKET 27 (74)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 35777788888888899999866554
No 16
>PF14813 NADH_B2: NADH dehydrogenase 1 beta subcomplex subunit 2
Probab=25.79 E-value=90 Score=20.83 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=26.1
Q ss_pred CCcccccCCchhHHHHHhhhhhhhccchhhHHHHHHhhcCC
Q 034386 11 DGELMRSDAKPCSRLMRQTAGIFTVGGALGFWVLCRLHYGP 51 (96)
Q Consensus 11 dgevMR~~akPCsrlMr~tA~ifsvGGal~fwvlcRlhyGp 51 (96)
..+..+.+.-|=++.-+..|-+ +||.|=||+|-|+-|=|
T Consensus 5 h~~~~yr~~p~~~k~~~~~a~~--l~g~mW~WIlwh~whd~ 43 (71)
T PF14813_consen 5 HIEPYYRQFPELTKKQVIMAEL--LSGFMWFWILWHFWHDP 43 (71)
T ss_pred CcceeecCCCCcCHHHHHHHHH--HHHHHHHHHHHHHhcCh
Confidence 3445555555555555555544 48999999999997755
No 17
>PHA01082 putative transcription regulator
Probab=24.89 E-value=44 Score=25.14 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=29.6
Q ss_pred hhhhhcCCCCcccccCCchhHHHHHhhhhh-hhccchhhHHHHHHhhcCC
Q 034386 3 LRRFFGFSDGELMRSDAKPCSRLMRQTAGI-FTVGGALGFWVLCRLHYGP 51 (96)
Q Consensus 3 lr~~~g~sdgevMR~~akPCsrlMr~tA~i-fsvGGal~fwvlcRlhyGp 51 (96)
.|..-.|.+|+-.-|+ |-||||-+-|= .+++- -|-=.|+|+|-
T Consensus 44 VrtVk~WD~G~~IPPe---CkRLMr~~~gRELs~~e---~W~~FrM~~~r 87 (133)
T PHA01082 44 VSEVKQWDAGEKIPPI---CKRLMRWHSRRELYYGD---EWWGFRMEGGR 87 (133)
T ss_pred HHHHhhccCCCcCChH---HHHHHHHhcccccccch---hhhhhhhccCc
Confidence 4566789999887765 78999988763 23333 36666777763
No 18
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=24.66 E-value=55 Score=22.37 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=19.3
Q ss_pred chhHHHHHhhhhhhhccchhhHHHHHH
Q 034386 20 KPCSRLMRQTAGIFTVGGALGFWVLCR 46 (96)
Q Consensus 20 kPCsrlMr~tA~ifsvGGal~fwvlcR 46 (96)
.-|-|=|+|. .+.|+++...-|.+.|
T Consensus 16 GRC~rCM~QL-tvLs~~~w~iWw~~f~ 41 (77)
T PF12292_consen 16 GRCQRCMWQL-TVLSVLSWPIWWFFFR 41 (77)
T ss_pred ccHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 3588999995 5567777777777765
No 19
>PF04081 DNA_pol_delta_4: DNA polymerase delta, subunit 4 ; InterPro: IPR007218 DNA polymerase is responsible for effective DNA replication. The function of the delta subunit 4 of DNA polymerase is not yet known.; GO: 0006260 DNA replication, 0005634 nucleus
Probab=22.50 E-value=34 Score=25.03 Aligned_cols=16 Identities=38% Similarity=0.891 Sum_probs=14.3
Q ss_pred hhcCCCCCcccchhhh
Q 034386 47 LHYGPRVTVPRSLRWA 62 (96)
Q Consensus 47 lhyGpriT~prslRwa 62 (96)
..|||-|-+.|.-||-
T Consensus 75 ~~yGPC~GitRl~RW~ 90 (124)
T PF04081_consen 75 SQYGPCIGITRLERWE 90 (124)
T ss_pred cccCCccCchHHHHHH
Confidence 4699999999999994
No 20
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=20.87 E-value=38 Score=27.19 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=26.1
Q ss_pred HHHHHhhhhhhhccchhhHHHHHHhhcCCCCCc
Q 034386 23 SRLMRQTAGIFTVGGALGFWVLCRLHYGPRVTV 55 (96)
Q Consensus 23 srlMr~tA~ifsvGGal~fwvlcRlhyGpriT~ 55 (96)
-+-|.+.|+..+|+|+++...|-|.+=.|.+.+
T Consensus 86 ~k~~~~aAgagAv~g~~~GY~lG~~m~rp~~~F 118 (217)
T smart00157 86 MKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHF 118 (217)
T ss_pred hHHHHHhhhcchhhhhccccccccccCCCcccc
Confidence 456888899999999988888888766666654
Done!