Query 034386
Match_columns 96
No_of_seqs 14 out of 16
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 22:17:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tpx_A Prion protein, major pr 23.3 7.9 0.00027 27.3 -1.7 27 29-55 5-31 (121)
2 1dp3_A TRAM protein; helix-loo 23.1 30 0.001 21.6 1.1 13 67-79 32-44 (55)
3 2l66_A SSO7C4, transcriptional 23.0 28 0.00095 19.7 0.9 14 2-15 19-32 (53)
4 4ekf_A Adenain; alpha and beta 20.8 13 0.00045 28.3 -1.1 10 7-16 73-82 (204)
5 1yfb_A Transition state regula 16.8 47 0.0016 19.8 0.9 14 2-15 29-42 (59)
6 2d9d_A BAG family molecular ch 16.8 63 0.0021 21.9 1.7 17 16-32 54-70 (89)
7 2glw_A PHS018, 92AA long hypot 15.4 51 0.0017 21.1 0.9 16 2-17 22-37 (92)
8 3d24_B Peroxisome proliferator 14.3 86 0.0029 17.1 1.5 16 16-31 4-19 (26)
9 3axb_A Putative oxidoreductase 13.0 48 0.0016 23.8 0.3 14 47-60 7-20 (448)
10 1ll8_A PAS kinase; PAS domain, 12.6 74 0.0025 17.3 1.0 15 2-16 27-41 (114)
No 1
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=23.31 E-value=7.9 Score=27.33 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=14.6
Q ss_pred hhhhhhccchhhHHHHHHhhcCCCCCc
Q 034386 29 TAGIFTVGGALGFWVLCRLHYGPRVTV 55 (96)
Q Consensus 29 tA~ifsvGGal~fwvlcRlhyGpriT~ 55 (96)
.||.++|-|||++..|-|.+=||.|.+
T Consensus 5 aaaaGAvvGgl~Gy~lg~a~~r~~~~F 31 (121)
T 1tpx_A 5 AAAAGAVVGGLGGYMLGSAMSRPLIHF 31 (121)
T ss_dssp ---------CCTTCEECCCCCCCCCCC
T ss_pred hHHHhHHhhcchhHHHHhcccCCCCCC
Confidence 478889999999999888877777765
No 2
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=23.05 E-value=30 Score=21.62 Aligned_cols=13 Identities=46% Similarity=0.631 Sum_probs=11.8
Q ss_pred chhhhhhhhhHHh
Q 034386 67 VSVSSTTALLVRL 79 (96)
Q Consensus 67 v~~ss~~allvrl 79 (96)
|+.||++.+|+.|
T Consensus 32 vs~Ssv~smLleL 44 (55)
T 1dp3_A 32 VSFSSISTMLLEL 44 (55)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 9999999999876
No 3
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=23.00 E-value=28 Score=19.69 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.6
Q ss_pred hhhhhhcCCCCccc
Q 034386 2 ALRRFFGFSDGELM 15 (96)
Q Consensus 2 ~lr~~~g~sdgevM 15 (96)
++|+.||+.+|+.+
T Consensus 19 ~ir~~lgi~~Gd~v 32 (53)
T 2l66_A 19 KVRQKFQIKEGDLV 32 (53)
T ss_dssp HHHHHSCCCTTCEE
T ss_pred HHHHHcCcCCCCEE
Confidence 57999999998754
No 4
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=20.82 E-value=13 Score=28.33 Aligned_cols=10 Identities=60% Similarity=1.032 Sum_probs=8.2
Q ss_pred hcCCCCcccc
Q 034386 7 FGFSDGELMR 16 (96)
Q Consensus 7 ~g~sdgevMR 16 (96)
|||||.+++.
T Consensus 73 fG~sd~~L~q 82 (204)
T 4ekf_A 73 FGFSDQRLKQ 82 (204)
T ss_dssp BTTCSHHHHH
T ss_pred CCCCHHHHHH
Confidence 7999988875
No 5
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=16.85 E-value=47 Score=19.80 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=11.7
Q ss_pred hhhhhhcCCCCccc
Q 034386 2 ALRRFFGFSDGELM 15 (96)
Q Consensus 2 ~lr~~~g~sdgevM 15 (96)
.+|+.||+.+|+..
T Consensus 29 eiR~~Lgi~~Gd~l 42 (59)
T 1yfb_A 29 ELRRTLGIAEKDAL 42 (59)
T ss_dssp HHHHHTTCCTTCEE
T ss_pred HHHHHcCCCCCCEE
Confidence 57999999999764
No 6
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=16.77 E-value=63 Score=21.93 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=14.1
Q ss_pred ccCCchhHHHHHhhhhh
Q 034386 16 RSDAKPCSRLMRQTAGI 32 (96)
Q Consensus 16 R~~akPCsrlMr~tA~i 32 (96)
-++-+||-|.||.-|-+
T Consensus 54 ~~~~NpcIReaRRrAV~ 70 (89)
T 2d9d_A 54 SLEKNPCIREARRRAVI 70 (89)
T ss_dssp CSCSSHHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHH
Confidence 57889999999987753
No 7
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=15.36 E-value=51 Score=21.06 Aligned_cols=16 Identities=25% Similarity=0.810 Sum_probs=13.6
Q ss_pred hhhhhhcCCCCccccc
Q 034386 2 ALRRFFGFSDGELMRS 17 (96)
Q Consensus 2 ~lr~~~g~sdgevMR~ 17 (96)
.+|+.||+++|+.+.-
T Consensus 22 ~iR~~LgI~~GD~V~v 37 (92)
T 2glw_A 22 GTRKFYGIEQGDFVEI 37 (92)
T ss_dssp HHHHHHTCCTTCEEEE
T ss_pred HHHHHcCCCCCCEEEE
Confidence 4799999999998764
No 8
>3d24_B Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; nuclear receptor, ligand binding domain, DNA- binding, metal-binding, nucleus; 2.11A {Homo sapiens}
Probab=14.29 E-value=86 Score=17.11 Aligned_cols=16 Identities=25% Similarity=0.704 Sum_probs=12.9
Q ss_pred ccCCchhHHHHHhhhh
Q 034386 16 RSDAKPCSRLMRQTAG 31 (96)
Q Consensus 16 R~~akPCsrlMr~tA~ 31 (96)
++...||+.|-|+.-+
T Consensus 4 ~~qrRpCtELlKyLTs 19 (26)
T 3d24_B 4 KPQRRPCSELLKYLTT 19 (26)
T ss_pred CccCCcHHHHHHHHhc
Confidence 6778999999998543
No 9
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=13.04 E-value=48 Score=23.75 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=0.0
Q ss_pred hhcCCCCCcccchh
Q 034386 47 LHYGPRVTVPRSLR 60 (96)
Q Consensus 47 lhyGpriT~prslR 60 (96)
.||+|+++.+|.-.
T Consensus 7 ~~~~~~~~~~~~~~ 20 (448)
T 3axb_A 7 HHHHSSGLVPRGSH 20 (448)
T ss_dssp --------------
T ss_pred ccccccccccCccc
Confidence 45666666666544
No 10
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=12.65 E-value=74 Score=17.28 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=11.7
Q ss_pred hhhhhhcCCCCcccc
Q 034386 2 ALRRFFGFSDGELMR 16 (96)
Q Consensus 2 ~lr~~~g~sdgevMR 16 (96)
+..+.||+|..|+.-
T Consensus 27 aa~~l~G~~~~el~g 41 (114)
T 1ll8_A 27 KACGLLGYSSQDLIG 41 (114)
T ss_dssp THHHHHTCCTTTTTT
T ss_pred HHHHHhCCCHHHHcC
Confidence 456889999988764
Done!