Query 034388
Match_columns 96
No_of_seqs 88 out of 90
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 22:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f5h_A Type I polyketide synth 69.6 1.8 6.3E-05 27.5 1.4 21 72-92 9-29 (68)
2 2lq3_A Uncharacterized protein 58.8 2.8 9.6E-05 29.9 0.7 9 64-72 18-26 (130)
3 3ush_A Uncharacterized protein 57.9 2.8 9.7E-05 29.8 0.6 10 63-72 15-24 (129)
4 1sr8_A Cobalamin biosynthesis 55.0 4.8 0.00016 31.9 1.6 23 63-88 3-25 (298)
5 2jwo_A RAG-2, V(D)J recombinat 35.9 11 0.00038 24.9 0.8 10 64-73 5-14 (82)
6 1ik9_C DNA ligase IV; DNA END 20.9 63 0.0021 17.7 2.0 14 76-89 19-32 (37)
7 1ga6_A Serine-carboxyl protein 17.5 49 0.0017 25.7 1.5 24 64-94 348-371 (372)
8 2nac_A NAD-dependent formate d 16.9 38 0.0013 26.8 0.7 9 61-69 7-15 (393)
9 2l4w_A Uncharacterized protein 13.3 68 0.0023 22.4 1.1 12 67-78 12-23 (120)
10 4fc5_A TON_0340, putative unch 12.9 58 0.002 25.0 0.7 23 66-88 47-73 (270)
No 1
>3f5h_A Type I polyketide synthase PIKAIII, type I polyketide synthase pikaiv fusion protein...; docking domain, pikromycin, H2-T2; 1.75A {Streptomyces venezuelae}
Probab=69.62 E-value=1.8 Score=27.49 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=16.5
Q ss_pred cCCCCCCCCHHHHHHHHhccc
Q 034388 72 PENRAVEIDPAELREMLLNHK 92 (96)
Q Consensus 72 Pe~~~~e~D~aelR~~lL~~~ 92 (96)
||..|..+|+.+||.++|..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (68)
T 3f5h_A 9 PEASIDDLDAEALIRMALGPR 29 (68)
T ss_dssp ---CGGGCCHHHHHHHHHCHH
T ss_pred CccccccccHHHHHHHhcCCc
Confidence 888999999999999999754
No 2
>2lq3_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI:biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=58.80 E-value=2.8 Score=29.87 Aligned_cols=9 Identities=56% Similarity=1.280 Sum_probs=8.0
Q ss_pred CCCCccccc
Q 034388 64 DPITGYYRP 72 (96)
Q Consensus 64 DP~TG~~~P 72 (96)
||.|||||=
T Consensus 18 ~P~TGf~Rd 26 (130)
T 2lq3_A 18 APMTGWYRN 26 (130)
T ss_dssp SSSCCCSSS
T ss_pred CCCcccCcC
Confidence 899999994
No 3
>3ush_A Uncharacterized protein; DUF2237, PF09996, PSI-biology, NESG, structural genomics, no structural genomics consortium, unknown function; 1.69A {Salinibacter ruber}
Probab=57.91 E-value=2.8 Score=29.81 Aligned_cols=10 Identities=60% Similarity=1.105 Sum_probs=8.5
Q ss_pred cCCCCccccc
Q 034388 63 PDPITGYYRP 72 (96)
Q Consensus 63 ~DP~TG~~~P 72 (96)
-||.|||||=
T Consensus 15 ~~P~TGf~Rd 24 (129)
T 3ush_A 15 MDPETGFYRD 24 (129)
T ss_dssp BTTBCSTTSS
T ss_pred CCCCCccccC
Confidence 3899999994
No 4
>1sr8_A Cobalamin biosynthesis protein (CBID); structural genomics, PSI, protein structure initiative, center for structural genomics, MCSG; 1.90A {Archaeoglobus fulgidus} SCOP: e.54.1.1
Probab=55.02 E-value=4.8 Score=31.86 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=17.7
Q ss_pred cCCCCcccccCCCCCCCCHHHHHHHH
Q 034388 63 PDPITGYYRPENRAVEIDPAELREML 88 (96)
Q Consensus 63 ~DP~TG~~~Pe~~~~e~D~aelR~~l 88 (96)
.||+|||=.||.....- +++++.
T Consensus 3 ~dpv~~~~~p~~w~~~~---~~~~~v 25 (298)
T 1sr8_A 3 IDPIELYRYPEKWIKDR---DAEKKV 25 (298)
T ss_dssp BCTTTCCBCCGGGCCCS---SHHHHH
T ss_pred CCCccCCcCcHHHHHHH---HHHHHH
Confidence 39999999999997766 444443
No 5
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=35.92 E-value=11 Score=24.93 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=8.2
Q ss_pred CCCCcccccC
Q 034388 64 DPITGYYRPE 73 (96)
Q Consensus 64 DP~TG~~~Pe 73 (96)
.|.|||||-=
T Consensus 5 ~~etGYWI~C 14 (82)
T 2jwo_A 5 SPEFGYWITC 14 (82)
T ss_dssp SSSCSSCSCS
T ss_pred CCcCceEEEe
Confidence 6899999865
No 6
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=20.88 E-value=63 Score=17.73 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=11.1
Q ss_pred CCCCCHHHHHHHHh
Q 034388 76 AVEIDPAELREMLL 89 (96)
Q Consensus 76 ~~e~D~aelR~~lL 89 (96)
+.+||+.|||.-|-
T Consensus 19 ~rd~t~~eLk~il~ 32 (37)
T 1ik9_C 19 FIDTDLNQLKEVFS 32 (37)
T ss_dssp SSCCCHHHHHHHHH
T ss_pred cCcCCHHHHHHHHH
Confidence 46789999998663
No 7
>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*
Probab=17.52 E-value=49 Score=25.69 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=17.9
Q ss_pred CCCCcccccCCCCCCCCHHHHHHHHhccccc
Q 034388 64 DPITGYYRPENRAVEIDPAELREMLLNHKVR 94 (96)
Q Consensus 64 DP~TG~~~Pe~~~~e~D~aelR~~lL~~~~~ 94 (96)
||+||+ +-+|...|.+.+++.+++
T Consensus 348 D~~TGl-------Gtpn~~~l~~~~~~~~~~ 371 (372)
T 1ga6_A 348 DYPTGW-------GSLDIAKLSAYIRSNGFG 371 (372)
T ss_dssp BTTTBT-------CEECHHHHHHHHHHHCC-
T ss_pred CCCccC-------chhhHHHHHHHHhhcccc
Confidence 666665 778899999988877664
No 8
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=16.94 E-value=38 Score=26.77 Aligned_cols=9 Identities=44% Similarity=0.970 Sum_probs=7.1
Q ss_pred cccCCCCcc
Q 034388 61 WAPDPITGY 69 (96)
Q Consensus 61 W~~DP~TG~ 69 (96)
--|||+|||
T Consensus 7 ~~~~~~~~~ 15 (393)
T 2nac_A 7 LYDDPVDGY 15 (393)
T ss_dssp CBCCCTTCS
T ss_pred ecCCCCCCC
Confidence 358999998
No 9
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=13.26 E-value=68 Score=22.38 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=10.4
Q ss_pred CcccccCCCCCC
Q 034388 67 TGYYRPENRAVE 78 (96)
Q Consensus 67 TG~~~Pe~~~~e 78 (96)
.|.|.|-|+|.+
T Consensus 12 ~~~WkpvN~f~~ 23 (120)
T 2l4w_A 12 GGRWKHVNHFDE 23 (120)
T ss_dssp SSTTTCCCCCSS
T ss_pred CCCccccccccc
Confidence 588999999976
No 10
>4fc5_A TON_0340, putative uncharacterized protein; unknown function; 2.30A {Thermococcus onnurineus}
Probab=12.86 E-value=58 Score=25.01 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=16.5
Q ss_pred CCcccccCCCCCCCC----HHHHHHHH
Q 034388 66 ITGYYRPENRAVEID----PAELREML 88 (96)
Q Consensus 66 ~TG~~~Pe~~~~e~D----~aelR~~l 88 (96)
+||+|.|.....|+| ++.|-..|
T Consensus 47 ~TGFpv~~~~~~ETDGP~GA~ala~aL 73 (270)
T 4fc5_A 47 VTGFPIPPMMVAETDGPPGALAIYRAV 73 (270)
T ss_dssp EECCCBTTTTBCBSSSHHHHHHHHHHH
T ss_pred EeCcccCCCCCcccCCcHHHHHHHHHH
Confidence 689998877778888 45555554
Done!