Query 034388
Match_columns 96
No_of_seqs 88 out of 90
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 22:20:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034388.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034388hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2mysa1 b.34.3.1 (A:34-79) Myo 76.4 0.34 2.5E-05 27.5 0.6 15 57-71 2-16 (46)
2 d1kk8a1 b.34.3.1 (A:29-76) Myo 69.7 0.46 3.3E-05 27.0 0.1 14 57-70 3-16 (48)
3 d1br2a1 b.34.3.1 (A:34-79) Myo 64.9 0.78 5.6E-05 25.8 0.4 12 60-71 2-13 (46)
4 d1cida2 b.1.1.3 (A:106-177) CD 57.9 1.4 0.0001 27.1 0.7 17 55-71 39-55 (72)
5 d1wioa4 b.1.1.3 (A:292-363) CD 53.6 1.8 0.00013 26.6 0.7 17 55-71 37-53 (72)
6 d1sr8a_ e.54.1.1 (A:) Cobalami 38.5 7 0.00051 28.7 2.0 19 62-80 2-20 (282)
7 d1zaka2 g.41.2.1 (A:128-158) M 30.0 7 0.00051 20.3 0.6 6 64-69 5-10 (31)
8 d1w7ja1 b.34.3.1 (A:5-62) Myos 26.4 6.1 0.00044 22.7 -0.1 11 58-68 7-17 (58)
9 d1z1ba1 d.10.1.4 (A:11-59) lam 25.2 9.8 0.00072 21.5 0.6 18 58-75 12-29 (49)
10 d2bgxa1 a.20.1.1 (A:180-260) P 20.3 19 0.0014 21.5 1.3 16 69-84 54-69 (81)
No 1
>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=76.39 E-value=0.34 Score=27.47 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.0
Q ss_pred CccccccCCCCcccc
Q 034388 57 ASSAWAPDPITGYYR 71 (96)
Q Consensus 57 ~~~~W~~DP~TG~~~ 71 (96)
.+..|+|||+-||=.
T Consensus 2 Kk~vwVpD~ke~yv~ 16 (46)
T d2mysa1 2 KSSVFVVHPKQSFVK 16 (46)
T ss_dssp TTEEEEECSSSSEEE
T ss_pred CceEEcccCcccEEE
Confidence 356799999999853
No 2
>d1kk8a1 b.34.3.1 (A:29-76) Myosin S1 fragment, N-terminal domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=69.67 E-value=0.46 Score=27.03 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=11.6
Q ss_pred CccccccCCCCccc
Q 034388 57 ASSAWAPDPITGYY 70 (96)
Q Consensus 57 ~~~~W~~DP~TG~~ 70 (96)
.+..|+||+.-||=
T Consensus 3 KK~vWVPD~kegfv 16 (48)
T d1kk8a1 3 KKNCWVPDEKEGFA 16 (48)
T ss_dssp TTEEEEEETTTEEE
T ss_pred cceEEecCCcccEE
Confidence 46779999999984
No 3
>d1br2a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=64.86 E-value=0.78 Score=25.76 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=10.1
Q ss_pred ccccCCCCcccc
Q 034388 60 AWAPDPITGYYR 71 (96)
Q Consensus 60 ~W~~DP~TG~~~ 71 (96)
-|+||++-||=.
T Consensus 2 VWVPd~kegfv~ 13 (46)
T d1br2a1 2 VWVPSEKHGFEA 13 (46)
T ss_dssp EEEECSSSSEEE
T ss_pred EEeeCCcccEEE
Confidence 499999999853
No 4
>d1cida2 b.1.1.3 (A:106-177) CD4 C2-set domains {Rat (Rattus rattus) [TaxId: 10117]}
Probab=57.86 E-value=1.4 Score=27.13 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=14.5
Q ss_pred cCCccccccCCCCcccc
Q 034388 55 SGASSAWAPDPITGYYR 71 (96)
Q Consensus 55 ~~~~~~W~~DP~TG~~~ 71 (96)
..++.-||+||..|-|.
T Consensus 39 ~qqK~v~v~~PeaG~Wq 55 (72)
T d1cida2 39 RQEKVIQVQAPEAGVWQ 55 (72)
T ss_dssp ESSSEEEEESCCSSEEE
T ss_pred CceeeEEecCCCCceEE
Confidence 35688999999999995
No 5
>d1wioa4 b.1.1.3 (A:292-363) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.63 E-value=1.8 Score=26.59 Aligned_cols=17 Identities=18% Similarity=0.630 Sum_probs=14.6
Q ss_pred cCCccccccCCCCcccc
Q 034388 55 SGASSAWAPDPITGYYR 71 (96)
Q Consensus 55 ~~~~~~W~~DP~TG~~~ 71 (96)
...+.-||+||..|-|.
T Consensus 37 ~qqK~v~v~~PeaG~Wq 53 (72)
T d1wioa4 37 KREKAVWVLNPEAGMWQ 53 (72)
T ss_dssp ESSSEEEESSCCSEEEE
T ss_pred CceeeEEecCCCCceEE
Confidence 35688999999999995
No 6
>d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=38.47 E-value=7 Score=28.75 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=16.3
Q ss_pred ccCCCCcccccCCCCCCCC
Q 034388 62 APDPITGYYRPENRAVEID 80 (96)
Q Consensus 62 ~~DP~TG~~~Pe~~~~e~D 80 (96)
|-||+|||=.|++....-|
T Consensus 2 ~~dpv~~~~~p~~~~~~~~ 20 (282)
T d1sr8a_ 2 LIDPIELYRYPEKWIKDRD 20 (282)
T ss_dssp CBCTTTCCBCCGGGCCCSS
T ss_pred cccCccCCcCCHHhccChH
Confidence 6799999999999987544
No 7
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=29.98 E-value=7 Score=20.26 Aligned_cols=6 Identities=67% Similarity=1.243 Sum_probs=5.3
Q ss_pred CCCCcc
Q 034388 64 DPITGY 69 (96)
Q Consensus 64 DP~TG~ 69 (96)
||+||-
T Consensus 5 DP~TG~ 10 (31)
T d1zaka2 5 DPVTGK 10 (31)
T ss_dssp CTTTCC
T ss_pred CCCCCc
Confidence 999994
No 8
>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=26.41 E-value=6.1 Score=22.68 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=8.5
Q ss_pred ccccccCCCCc
Q 034388 58 SSAWAPDPITG 68 (96)
Q Consensus 58 ~~~W~~DP~TG 68 (96)
..-|+|||..+
T Consensus 7 tRvWiPd~e~v 17 (58)
T d1w7ja1 7 ARVWIPDPEEV 17 (58)
T ss_dssp CEEEEEETTTE
T ss_pred cEEEEECcccc
Confidence 35699999765
No 9
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=25.17 E-value=9.8 Score=21.45 Aligned_cols=18 Identities=28% Similarity=0.074 Sum_probs=15.0
Q ss_pred ccccccCCCCcccccCCC
Q 034388 58 SSAWAPDPITGYYRPENR 75 (96)
Q Consensus 58 ~~~W~~DP~TG~~~Pe~~ 75 (96)
+.+|-+||+||-+.+-..
T Consensus 12 ~y~~yr~P~tGk~~~LG~ 29 (49)
T d1z1ba1 12 GYYCYRDPRTGKEFGLGR 29 (49)
T ss_dssp TEEEEECTTTCCEEEEES
T ss_pred CeEEeecCCCCceecCCc
Confidence 467789999999988665
No 10
>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.31 E-value=19 Score=21.46 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.6
Q ss_pred ccccCCCCCCCCHHHH
Q 034388 69 YYRPENRAVEIDPAEL 84 (96)
Q Consensus 69 ~~~Pe~~~~e~D~ael 84 (96)
.|||++..+.+|..-+
T Consensus 54 hFRp~~i~G~~D~Et~ 69 (81)
T d2bgxa1 54 HFRPTLYNGEADAETQ 69 (81)
T ss_dssp HHCTTCCSSCCBHHHH
T ss_pred HccccccCCcCCHHHH
Confidence 6999999999998643
Done!