BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034389
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OQ4|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|B Chain B, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|C Chain C, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|D Chain D, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|E Chain E, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|F Chain F, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ7|A Chain A, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|B Chain B, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|C Chain C, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|D Chain D, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|E Chain E, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|F Chain F, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ9|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Acetate.
pdb|1OQB|A Chain A, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|B Chain B, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|C Chain C, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|D Chain D, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|E Chain E, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|F Chain F, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|2XZ0|A Chain A, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ0|B Chain B, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ0|C Chain C, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|A Chain A, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|B Chain B, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 363
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 2/96 (2%)
Query: 1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
MYDG D LF HF+AVAQ+LGVYTA DYADILEFL+G+W +KL GL+ EG++AQ++VC
Sbjct: 270 MYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCR 329
Query: 61 LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
L PRIRRL+ A RAK+ P + FSWIF+R++ L
Sbjct: 330 LPPRIRRLEERAQGRAKEA--PTMPFSWIFDRQVKL 363
>pdb|2J2F|A Chain A, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|B Chain B, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|C Chain C, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|D Chain D, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|E Chain E, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|F Chain F, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
Length = 363
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 2/96 (2%)
Query: 1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
MYDG D LF HF+AVAQ+LGVYTA DYADILEFL+G+W +KL GL+ EG++AQ++VC
Sbjct: 270 MYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCR 329
Query: 61 LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
L PRIRRL+ A RAK+ P + FSWIF+R++ L
Sbjct: 330 LPPRIRRLEERAQGRAKEA--PTMPFSWIFDRQVKL 363
>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|B Chain B, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|C Chain C, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|D Chain D, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|E Chain E, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|F Chain F, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
Length = 345
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 2/96 (2%)
Query: 1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
MYDG D LF HF+AVAQ+LGVYTA DYADILEFL+G+W +KL GL+ EG++AQ++VC
Sbjct: 252 MYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCR 311
Query: 61 LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
L PRIRRL+ A RAK+ P + FSWIF+R++ L
Sbjct: 312 LPPRIRRLEERAQGRAKEA--PTMPFSWIFDRQVKL 345
>pdb|2UW1|A Chain A, Ivy Desaturase Structure
Length = 338
Score = 121 bits (304), Expect = 9e-29, Method: Composition-based stats.
Identities = 57/96 (59%), Positives = 72/96 (75%), Gaps = 2/96 (2%)
Query: 1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
MYDG D LF HF AVAQ+LGVY+A DY DILEFL+ +W E+L GL+ EGR+AQE+VC
Sbjct: 245 MYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCE 304
Query: 61 LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
L P+IRRL+ A RAK + P + FSWIF+R++ L
Sbjct: 305 LGPKIRRLEERAQGRAK--EAPTMPFSWIFDRQVKL 338
>pdb|2UW1|B Chain B, Ivy Desaturase Structure
Length = 338
Score = 120 bits (301), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/96 (58%), Positives = 72/96 (75%), Gaps = 2/96 (2%)
Query: 1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
MYDG D LF HF AVAQ++GVY+A DY DILEFL+ +W E+L GL+ EGR+AQE+VC
Sbjct: 245 MYDGSDELLFKHFTAVAQRVGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCE 304
Query: 61 LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
L P+IRRL+ A RAK + P + FSWIF+R++ L
Sbjct: 305 LGPKIRRLEERAQGRAK--EAPTMPFSWIFDRQVKL 338
>pdb|1FFK|I Chain I, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 194
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 49 GEGRRAQEFVCGLAPRIRRLQGLADQRAKKLKP 81
+GR++++ + PR + LQ +A++RA + P
Sbjct: 78 NKGRKSKKMMVNRRPRKKNLQWIAEERANRKYP 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,931,958
Number of Sequences: 62578
Number of extensions: 99721
Number of successful extensions: 227
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 6
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)