Query 034389
Match_columns 96
No_of_seqs 109 out of 195
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 12:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00179 acyl- [acyl-carrier p 100.0 3.7E-44 8E-49 293.0 10.1 96 1-96 295-390 (390)
2 PF03405 FA_desaturase_2: Fatt 100.0 2.4E-38 5.3E-43 254.2 4.8 93 1-94 238-330 (330)
3 cd01050 Acyl_ACP_Desat Acyl AC 99.9 2.8E-25 6E-30 176.2 6.6 65 8-72 233-297 (297)
4 TIGR01392 homoserO_Ac_trn homo 89.4 0.41 8.9E-06 37.0 3.2 47 22-68 106-155 (351)
5 PRK06765 homoserine O-acetyltr 85.9 0.96 2.1E-05 36.9 3.5 48 21-68 139-189 (389)
6 PRK06489 hypothetical protein; 85.6 0.95 2.1E-05 35.2 3.2 48 22-69 132-183 (360)
7 PRK00175 metX homoserine O-ace 83.8 1.2 2.6E-05 35.3 3.1 46 22-67 126-174 (379)
8 PLN02824 hydrolase, alpha/beta 79.2 1.7 3.7E-05 32.0 2.4 48 21-68 81-130 (294)
9 PF06667 PspB: Phage shock pro 77.6 6.1 0.00013 26.2 4.4 39 31-74 22-60 (75)
10 PRK03592 haloalkane dehalogena 77.6 1.9 4.2E-05 31.8 2.3 47 22-68 73-121 (295)
11 PRK08775 homoserine O-acetyltr 75.9 3.4 7.4E-05 31.8 3.3 47 22-68 117-166 (343)
12 TIGR02427 protocat_pcaD 3-oxoa 75.7 6 0.00013 26.6 4.1 48 22-69 59-108 (251)
13 PF10804 DUF2538: Protein of u 72.1 1.6 3.5E-05 32.8 0.6 31 53-92 64-94 (156)
14 PF09807 DUF2348: Uncharacteri 71.0 2.3 5.1E-05 32.9 1.3 27 8-34 56-89 (249)
15 PRK10673 acyl-CoA esterase; Pr 70.9 4.5 9.7E-05 28.6 2.7 47 23-69 62-110 (255)
16 PRK00870 haloalkane dehalogena 70.5 3.8 8.2E-05 30.5 2.3 47 22-68 95-143 (302)
17 TIGR02240 PHA_depoly_arom poly 68.6 7.9 0.00017 28.3 3.6 47 22-68 71-119 (276)
18 PRK09458 pspB phage shock prot 68.2 11 0.00024 25.2 4.0 37 32-73 23-59 (75)
19 PRK03204 haloalkane dehalogena 67.7 3.9 8.4E-05 30.7 1.9 47 22-68 81-129 (286)
20 PF12697 Abhydrolase_6: Alpha/ 65.3 3.2 6.9E-05 27.3 0.9 47 21-67 45-93 (228)
21 TIGR01249 pro_imino_pep_1 prol 64.9 11 0.00024 28.3 3.9 47 22-68 75-123 (306)
22 PF10503 Esterase_phd: Esteras 64.9 5.7 0.00012 30.4 2.4 44 25-68 78-125 (220)
23 TIGR02976 phageshock_pspB phag 63.2 19 0.00042 23.8 4.3 38 31-73 22-59 (75)
24 PF00561 Abhydrolase_1: alpha/ 61.6 3.3 7.1E-05 28.1 0.5 50 19-68 21-72 (230)
25 TIGR01250 pro_imino_pep_2 prol 60.6 7.3 0.00016 27.0 2.1 46 22-67 76-123 (288)
26 TIGR03611 RutD pyrimidine util 59.1 21 0.00045 24.4 4.1 49 21-69 59-109 (257)
27 PF12882 NUT_C: NUT protein C 58.5 5.7 0.00012 29.5 1.3 15 24-38 24-38 (144)
28 PF08855 DUF1825: Domain of un 58.3 10 0.00022 27.0 2.5 52 8-60 16-74 (108)
29 PLN03084 alpha/beta hydrolase 56.8 11 0.00024 30.7 2.8 47 22-68 177-225 (383)
30 PLN02965 Probable pheophorbida 52.5 12 0.00025 27.2 2.1 48 21-68 50-100 (255)
31 PF08252 Leader_CPA1: arg-2/CP 49.8 8.2 0.00018 20.9 0.7 12 19-30 4-15 (24)
32 PRK07581 hypothetical protein; 48.7 23 0.0005 26.9 3.3 35 35-69 116-153 (339)
33 COG4607 CeuA ABC-type enteroch 47.9 15 0.00033 30.5 2.3 81 4-91 126-221 (320)
34 COG2005 ModE N-terminal domain 46.8 57 0.0012 23.7 4.9 62 13-74 34-98 (130)
35 KOG3046 Transcription factor, 46.1 14 0.0003 27.7 1.7 24 1-24 80-104 (147)
36 PF03801 Ndc80_HEC: HEC/Ndc80p 45.0 17 0.00037 26.4 2.0 18 23-40 67-84 (157)
37 TIGR03056 bchO_mg_che_rel puta 43.4 19 0.00041 25.4 1.9 46 22-67 75-122 (278)
38 COG4667 Predicted esterase of 42.7 34 0.00073 28.2 3.5 45 21-69 23-69 (292)
39 PF01049 Cadherin_C: Cadherin 41.9 12 0.00026 27.0 0.8 26 46-71 120-145 (149)
40 COG0596 MhpC Predicted hydrola 41.9 33 0.00072 22.2 2.8 47 22-68 68-116 (282)
41 TIGR03695 menH_SHCHC 2-succiny 41.7 25 0.00054 23.4 2.2 45 23-67 50-97 (251)
42 PLN03087 BODYGUARD 1 domain co 39.1 27 0.00058 29.7 2.5 47 22-68 253-302 (481)
43 PF11897 DUF3417: Protein of u 38.6 20 0.00043 25.3 1.4 14 60-73 9-22 (118)
44 PF12411 Choline_sulf_C: Choli 37.4 17 0.00037 22.9 0.9 17 13-29 13-29 (54)
45 TIGR03418 chol_sulf_TF putativ 37.1 1.3E+02 0.0028 22.0 5.7 61 11-73 16-83 (291)
46 cd08332 CARD_CASP2 Caspase act 36.7 28 0.00061 23.1 1.9 38 27-64 21-63 (90)
47 PF10410 DnaB_bind: DnaB-helic 35.8 25 0.00055 20.4 1.4 37 31-67 5-41 (59)
48 PLN02679 hydrolase, alpha/beta 33.3 39 0.00085 26.4 2.5 47 22-68 135-184 (360)
49 PRK08351 DNA-directed RNA poly 32.3 14 0.0003 23.8 -0.2 17 13-29 41-57 (61)
50 PF14399 Transpep_BrtH: NlpC/p 31.8 41 0.00089 25.4 2.3 64 8-71 244-308 (317)
51 PF03652 UPF0081: Uncharacteri 31.6 35 0.00075 24.1 1.8 39 27-65 38-85 (135)
52 PRK11062 nhaR transcriptional 31.0 2E+02 0.0042 21.5 5.8 61 11-72 19-85 (296)
53 PF05388 Carbpep_Y_N: Carboxyp 30.9 52 0.0011 23.1 2.5 40 29-69 42-82 (113)
54 PF05527 DUF758: Domain of unk 30.4 23 0.00049 27.2 0.7 33 5-37 142-175 (186)
55 TIGR00250 RNAse_H_YqgF RNAse H 30.3 81 0.0018 22.1 3.5 37 29-65 37-82 (130)
56 COG0816 Predicted endonuclease 30.3 62 0.0014 23.5 2.9 49 17-65 26-87 (141)
57 KOG2715 Uncharacterized conser 29.8 44 0.00095 26.2 2.2 37 45-81 91-127 (210)
58 PF10138 vWA-TerF-like: vWA fo 29.7 28 0.00061 26.8 1.1 40 13-53 48-88 (200)
59 TIGR02224 recomb_XerC tyrosine 29.7 95 0.002 22.1 3.8 52 9-62 2-57 (295)
60 COG3668 ParE Plasmid stabiliza 29.5 90 0.0019 20.0 3.4 36 26-71 12-47 (98)
61 PLN02578 hydrolase 28.4 55 0.0012 25.4 2.5 47 22-68 132-180 (354)
62 PRK10094 DNA-binding transcrip 28.3 2.5E+02 0.0054 21.2 6.1 64 11-75 17-86 (308)
63 PF07120 DUF1376: Protein of u 28.0 54 0.0012 21.3 2.1 40 7-47 37-76 (88)
64 COG3509 LpqC Poly(3-hydroxybut 27.8 31 0.00067 28.6 1.1 57 13-69 113-173 (312)
65 PF08784 RPA_C: Replication pr 27.5 73 0.0016 20.7 2.7 26 12-38 67-92 (102)
66 PRK10515 hypothetical protein; 27.4 1E+02 0.0023 21.4 3.5 13 80-92 72-84 (90)
67 PF00984 UDPG_MGDP_dh: UDP-glu 27.4 1.1E+02 0.0024 20.4 3.6 31 8-42 20-50 (96)
68 PRK00109 Holliday junction res 26.8 53 0.0011 23.2 2.0 49 17-65 28-88 (138)
69 smart00070 GLUCA Glucagon like 26.4 91 0.002 16.9 2.5 14 21-35 4-17 (27)
70 PRK11126 2-succinyl-6-hydroxy- 26.4 60 0.0013 22.7 2.2 45 23-67 47-94 (242)
71 PRK03963 V-type ATP synthase s 26.0 78 0.0017 22.9 2.9 27 12-38 86-112 (198)
72 PF11656 DUF3811: YjbD family 25.9 1E+02 0.0023 21.3 3.2 36 56-91 43-80 (87)
73 PF09824 ArsR: ArsR transcript 25.8 20 0.00044 27.1 -0.2 43 26-69 107-149 (160)
74 COG1474 CDC6 Cdc6-related prot 25.5 77 0.0017 26.0 3.0 32 7-39 298-329 (366)
75 PRK03601 transcriptional regul 25.5 2.8E+02 0.006 20.4 5.8 60 11-73 16-83 (275)
76 PHA02446 hypothetical protein 25.3 39 0.00086 25.2 1.2 36 53-90 124-159 (166)
77 PRK13716 leader peptide RepL; 25.3 31 0.00068 18.9 0.5 13 53-65 4-17 (26)
78 PF06874 FBPase_2: Firmicute f 25.0 56 0.0012 29.6 2.2 41 25-69 132-184 (640)
79 PF04433 SWIRM: SWIRM domain; 24.8 1.1E+02 0.0023 19.5 3.1 45 23-69 30-75 (86)
80 CHL00181 cbbX CbbX; Provisiona 24.8 2.8E+02 0.006 21.7 5.9 58 14-75 181-253 (287)
81 PF00465 Fe-ADH: Iron-containi 24.5 1.4E+02 0.0031 23.5 4.3 54 11-74 289-350 (366)
82 COG1691 NCAIR mutase (PurE)-re 24.5 89 0.0019 25.3 3.1 33 23-55 57-89 (254)
83 PF00522 VPR: VPR/VPX protein; 24.3 57 0.0012 22.7 1.7 16 21-36 61-76 (96)
84 PF09524 Phg_2220_C: Conserved 24.3 62 0.0014 21.3 1.9 22 22-43 31-52 (74)
85 PF02106 Fanconi_C: Fanconi an 24.0 77 0.0017 28.3 2.8 53 11-71 130-187 (559)
86 PF14689 SPOB_a: Sensor_kinase 23.9 1E+02 0.0022 19.0 2.7 23 48-70 36-58 (62)
87 PLN02211 methyl indole-3-aceta 23.7 66 0.0014 24.1 2.2 47 22-68 66-115 (273)
88 PF11434 CHIPS: Chemotaxis-inh 23.2 57 0.0012 22.3 1.6 29 59-87 2-30 (91)
89 COG1686 DacC D-alanyl-D-alanin 23.0 52 0.0011 27.4 1.6 26 22-47 175-201 (389)
90 PRK02292 V-type ATP synthase s 22.8 1.1E+02 0.0023 22.1 3.0 29 11-39 84-112 (188)
91 PF13286 HD_assoc: Phosphohydr 22.6 69 0.0015 20.2 1.8 18 49-66 69-86 (92)
92 PF04336 DUF479: Protein of un 22.6 1.1E+02 0.0025 20.4 3.0 40 34-73 4-47 (106)
93 PF13524 Glyco_trans_1_2: Glyc 22.6 1.9E+02 0.0042 17.6 3.8 57 20-77 21-78 (92)
94 PRK05855 short chain dehydroge 22.5 1.4E+02 0.0031 23.8 3.9 40 21-60 72-114 (582)
95 PF08921 DUF1904: Domain of un 22.4 75 0.0016 22.1 2.1 32 55-91 11-43 (108)
96 KOG2008 BTK-associated SH3-dom 22.4 1.1E+02 0.0025 26.1 3.5 53 26-79 123-178 (426)
97 smart00497 IENR1 Intron encode 22.3 82 0.0018 17.7 1.9 28 9-40 16-43 (53)
98 PF13713 BRX_N: Transcription 22.3 96 0.0021 18.3 2.2 23 51-73 7-29 (39)
99 cd08178 AAD_C C-terminal alcoh 22.1 1.7E+02 0.0036 23.7 4.3 60 8-73 311-376 (398)
100 PF01139 RtcB: tRNA-splicing l 21.7 34 0.00074 28.7 0.3 49 19-67 200-254 (420)
101 COG2021 MET2 Homoserine acetyl 21.6 1.9E+02 0.0041 24.5 4.6 51 21-71 125-178 (368)
102 PF06057 VirJ: Bacterial virul 21.6 1.1E+02 0.0024 23.5 3.0 48 19-66 45-94 (192)
103 COG2081 Predicted flavoprotein 21.2 68 0.0015 27.5 2.0 49 19-67 75-123 (408)
104 PF10244 MRP-L51: Mitochondria 21.2 23 0.0005 24.8 -0.7 12 22-33 16-27 (94)
105 PHA00099 minor capsid protein 21.0 1.7E+02 0.0036 22.0 3.7 37 15-67 46-86 (147)
106 PTZ00458 acyl CoA binding prot 20.9 72 0.0016 21.5 1.7 16 27-42 74-89 (90)
107 cd06563 GH20_chitobiase-like T 20.7 69 0.0015 25.7 1.8 19 20-38 80-98 (357)
108 TIGR01840 esterase_phb esteras 20.5 1.6E+02 0.0034 21.0 3.5 44 25-68 76-123 (212)
109 PF08734 GYD: GYD domain; Int 20.4 1.7E+02 0.0036 19.3 3.4 42 44-92 4-45 (91)
No 1
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=100.00 E-value=3.7e-44 Score=292.97 Aligned_cols=96 Identities=67% Similarity=1.189 Sum_probs=93.4
Q ss_pred CCCCCCchhhhHHHHHHHHhhccchhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHHHHHHhhcC
Q 034389 1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLK 80 (96)
Q Consensus 1 M~DG~~~~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~~r~~~~~ 80 (96)
|+||+|++||+|||+||||+||||+.||+|||+|||++|+|++|+|||+||+|||||||+||+|||||+||+++|+|+.+
T Consensus 295 m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v~~l~gLs~eg~kArd~l~~l~~rirr~~era~~~~~~~~ 374 (390)
T PLN00179 295 MYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELTGLSGEGRRAQDYVCGLPPRIRRLEERAQDRAKKAK 374 (390)
T ss_pred CCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcCcccCCCHHHHHHHHHHHHhHHHHHHHHHHHhhHHhccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCcccceeeeCcccCC
Q 034389 81 PPRVKFSWIFNRKLSL 96 (96)
Q Consensus 81 ~~~~~FsWI~~r~v~~ 96 (96)
+..++|||||+|+|.|
T Consensus 375 ~~~~~fsWi~~r~v~~ 390 (390)
T PLN00179 375 PPSIPFSWIFDREVRL 390 (390)
T ss_pred CCCCceeeecCCccCC
Confidence 6789999999999976
No 2
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=100.00 E-value=2.4e-38 Score=254.16 Aligned_cols=93 Identities=52% Similarity=0.963 Sum_probs=77.8
Q ss_pred CCCCCCchhhhHHHHHHHHhhccchhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHHHHHHhhcC
Q 034389 1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLK 80 (96)
Q Consensus 1 M~DG~~~~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~~r~~~~~ 80 (96)
|.||+|++||+|||+++|++||||+.||+|||++||++|+|++++|||+||++||||||+||+|++|++||++.++++..
T Consensus 238 m~dg~d~~lF~~~~a~~a~~GvY~~~dy~dI~~~l~~~W~i~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~~~~~ 317 (330)
T PF03405_consen 238 MPDGRDPDLFERFSAVAARAGVYTPRDYADILEPLLRRWKIESRTGLSGEGEKARDYLCALPARLRRFEERADRRAARMA 317 (330)
T ss_dssp ---SS-TTHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTTGGG--S--HHHHHHHHHHHHHHHHHHHHTTTTSTTTSSS-
T ss_pred cccCcchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCcccCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999998877765
Q ss_pred CCcccceeeeCccc
Q 034389 81 PPRVKFSWIFNRKL 94 (96)
Q Consensus 81 ~~~~~FsWI~~r~v 94 (96)
..++|||||||+|
T Consensus 318 -~~~~fswif~r~v 330 (330)
T PF03405_consen 318 -KPVPFSWIFNREV 330 (330)
T ss_dssp --EEE-GGGTT-EE
T ss_pred -CCCceeeecCCCC
Confidence 5789999999997
No 3
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=99.92 E-value=2.8e-25 Score=176.24 Aligned_cols=65 Identities=58% Similarity=0.991 Sum_probs=63.7
Q ss_pred hhhhHHHHHHHHhhccchhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHH
Q 034389 8 RLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLA 72 (96)
Q Consensus 8 ~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa 72 (96)
++|+|||+++||+||||+.||++||++|+++|+|++|+|||+||+|||||||+||+||+|++||+
T Consensus 233 ~~f~~~~~~~a~~gvY~~~~~~~V~~~~~~~w~v~~l~~l~~eg~~ar~~~~~l~~~~~~~~~r~ 297 (297)
T cd01050 233 PLFERFAAVAARAGVYTARDYDDILEPLVRRWRVEELTGLSGEGRKAQEYLCALPARLRRLAERA 297 (297)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999999999999999999999999874
No 4
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=89.40 E-value=0.41 Score=37.02 Aligned_cols=47 Identities=23% Similarity=0.365 Sum_probs=43.1
Q ss_pred ccchhhHHHHHHHHhhcccccc---ccCCChHHHHHHHHHhhccHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEK---LEGLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~---l~gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
.||..|+++.+..|++..++++ |.|.|=-|.=|+.|.+.-|.|+++|
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~l 155 (351)
T TIGR01392 106 LITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDYPERVRAI 155 (351)
T ss_pred CCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheE
Confidence 5899999999999999999997 5699999999999999999999873
No 5
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=85.91 E-value=0.96 Score=36.86 Aligned_cols=48 Identities=27% Similarity=0.364 Sum_probs=43.8
Q ss_pred hccchhhHHHHHHHHhhccccccc---cCCChHHHHHHHHHhhccHHHHHH
Q 034389 21 GVYTAHDYADILEFLIGQWGSEKL---EGLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 21 GVYTa~DY~dIle~Lv~~W~ve~l---~gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
-+||..|+++.+..|++..+|+++ -|-|=-|.-|+++.+.-|+|+++|
T Consensus 139 P~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~l 189 (389)
T PRK06765 139 PVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHYPHMVERM 189 (389)
T ss_pred CcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheE
Confidence 369999999999999999999975 499999999999999999999884
No 6
>PRK06489 hypothetical protein; Provisional
Probab=85.58 E-value=0.95 Score=35.20 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=40.2
Q ss_pred ccchhhHHH-HHHHHhhcccccc---ccCCChHHHHHHHHHhhccHHHHHHH
Q 034389 22 VYTAHDYAD-ILEFLIGQWGSEK---LEGLTGEGRRAQEFVCGLAPRIRRLQ 69 (96)
Q Consensus 22 VYTa~DY~d-Ile~Lv~~W~ve~---l~gLs~eg~kAqdyvc~Lp~Rirrla 69 (96)
.||..|+++ +++.|.+..++++ |-|.|=-|.=|++|...-|+|+++|-
T Consensus 132 ~~~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LV 183 (360)
T PRK06489 132 RYDYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALM 183 (360)
T ss_pred cccHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHHHHHHhCchhhheee
Confidence 589999985 5566668788875 47999999999999999999988854
No 7
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=83.82 E-value=1.2 Score=35.26 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=42.1
Q ss_pred ccchhhHHHHHHHHhhcccccc---ccCCChHHHHHHHHHhhccHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEK---LEGLTGEGRRAQEFVCGLAPRIRR 67 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~---l~gLs~eg~kAqdyvc~Lp~Rirr 67 (96)
.||..||++.+..|++..++++ |.|.|=-|.-|+.|....|.|+++
T Consensus 126 ~~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~ 174 (379)
T PRK00175 126 VITIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDYPDRVRS 174 (379)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhChHhhhE
Confidence 6999999999999999999987 459999999999999999998775
No 8
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=79.23 E-value=1.7 Score=32.04 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=42.0
Q ss_pred hccchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHHHH
Q 034389 21 GVYTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 21 GVYTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
..||..||++-+..|++.++++++. |.|--|.=|..|...-|+|+.+|
T Consensus 81 ~~~~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l 130 (294)
T PLN02824 81 SFYTFETWGEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAPELVRGV 130 (294)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhChhheeEE
Confidence 4699999999999999999888654 99999999999999889887764
No 9
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=77.56 E-value=6.1 Score=26.25 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=29.9
Q ss_pred HHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHHHH
Q 034389 31 ILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQ 74 (96)
Q Consensus 31 Ile~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~~ 74 (96)
|+-|-..+|+... |||++- ++-|-.|-.+-+||+||++.
T Consensus 22 L~lHY~sk~~~~~--gLs~~d---~~~L~~L~~~a~rm~eRI~t 60 (75)
T PF06667_consen 22 LILHYRSKWKSSQ--GLSEED---EQRLQELYEQAERMEERIET 60 (75)
T ss_pred HHHHHHHhcccCC--CCCHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4667788998765 898653 55688888888999998873
No 10
>PRK03592 haloalkane dehalogenase; Provisional
Probab=77.56 E-value=1.9 Score=31.77 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=42.3
Q ss_pred ccchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
-||..+|++-+..|++.+++++.. |.|--|-=|..|....|+|+++|
T Consensus 73 ~~~~~~~a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~l 121 (295)
T PRK03592 73 DYTFADHARYLDAWFDALGLDDVVLVGHDWGSALGFDWAARHPDRVRGI 121 (295)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHhChhheeEE
Confidence 389999999999999999988765 99999999999999999988875
No 11
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=75.91 E-value=3.4 Score=31.83 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=41.0
Q ss_pred ccchhhHHHHHHHHhhcccccc---ccCCChHHHHHHHHHhhccHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEK---LEGLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~---l~gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
-|+..||++.+..|++.-++++ |-|.|=-|.=|+.|...-|+|+++|
T Consensus 117 ~~~~~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~L 166 (343)
T PRK08775 117 PIDTADQADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHPARVRTL 166 (343)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHChHhhheE
Confidence 4788899999999999988864 5699999999999999999988764
No 12
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=75.66 E-value=6 Score=26.60 Aligned_cols=48 Identities=31% Similarity=0.375 Sum_probs=40.2
Q ss_pred ccchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRRLQ 69 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirrla 69 (96)
.|+..|+++-+..+++.++.+++. |.|--|.=|-.+...-|+++.++-
T Consensus 59 ~~~~~~~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li 108 (251)
T TIGR02427 59 PYSIEDLADDVLALLDHLGIERAVFCGLSLGGLIAQGLAARRPDRVRALV 108 (251)
T ss_pred CCCHHHHHHHHHHHHHHhCCCceEEEEeCchHHHHHHHHHHCHHHhHHHh
Confidence 578889999999999998887654 999999999988888888887754
No 13
>PF10804 DUF2538: Protein of unknown function (DUF2538) ; InterPro: IPR024469 This family of proteins has no known function. ; PDB: 3KBY_B.
Probab=72.08 E-value=1.6 Score=32.78 Aligned_cols=31 Identities=16% Similarity=0.543 Sum_probs=23.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHhhcCCCcccceeeeCc
Q 034389 53 RAQEFVCGLAPRIRRLQGLADQRAKKLKPPRVKFSWIFNR 92 (96)
Q Consensus 53 kAqdyvc~Lp~RirrlaERa~~r~~~~~~~~~~FsWI~~r 92 (96)
.|-=|+.+||+=++++. .-....||+|++++
T Consensus 64 ~aACYIlAlPEIf~kv~---------vf~sd~PF~wv~d~ 94 (156)
T PF10804_consen 64 DAACYILALPEIFRKVD---------VFESDLPFDWVYDE 94 (156)
T ss_dssp HHHHHHHTSHHHHTTS----------CCC-SSTTCCCEET
T ss_pred eeeeeEEEcHHHHhhhh---------HhccCCCceEEeEc
Confidence 46679999999887743 33346799999998
No 14
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=70.97 E-value=2.3 Score=32.90 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=20.3
Q ss_pred hhhhHHHHHHHHhhccch-------hhHHHHHHH
Q 034389 8 RLFAHFAAVAQQLGVYTA-------HDYADILEF 34 (96)
Q Consensus 8 ~lF~~FS~vAQR~GVYTa-------~DY~dIle~ 34 (96)
+-|.||++|+||+|+=.+ -.|+|-+..
T Consensus 56 q~~~HY~~v~~KLG~NL~~~~~~gql~fiD~l~~ 89 (249)
T PF09807_consen 56 QSFSHYNNVAQKLGVNLSAAKEKGQLVFIDGLKS 89 (249)
T ss_pred CCHHHHHHHHHhhEecchHhccCCcEEEeehhhh
Confidence 569999999999998664 245565653
No 15
>PRK10673 acyl-CoA esterase; Provisional
Probab=70.95 E-value=4.5 Score=28.56 Aligned_cols=47 Identities=19% Similarity=0.097 Sum_probs=38.6
Q ss_pred cchhhHHHHHHHHhhccccccc--cCCChHHHHHHHHHhhccHHHHHHH
Q 034389 23 YTAHDYADILEFLIGQWGSEKL--EGLTGEGRRAQEFVCGLAPRIRRLQ 69 (96)
Q Consensus 23 YTa~DY~dIle~Lv~~W~ve~l--~gLs~eg~kAqdyvc~Lp~Rirrla 69 (96)
||..|+++-+..+++.=+++++ -|.|--|.=|..+....|+|+++|.
T Consensus 62 ~~~~~~~~d~~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lv 110 (255)
T PRK10673 62 MNYPAMAQDLLDTLDALQIEKATFIGHSMGGKAVMALTALAPDRIDKLV 110 (255)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEECHHHHHHHHHHHhCHhhcceEE
Confidence 7778888878778777677654 4999999999999999999987743
No 16
>PRK00870 haloalkane dehalogenase; Provisional
Probab=70.48 E-value=3.8 Score=30.51 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=40.6
Q ss_pred ccchhhHHHHHHHHhhccccccc--cCCChHHHHHHHHHhhccHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEKL--EGLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~l--~gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
-||..+|++.+..+++..+++++ -|-|=-|.=|+.|...-|.++.+|
T Consensus 95 ~~~~~~~a~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~l 143 (302)
T PRK00870 95 DYTYARHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPDRFARL 143 (302)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHhChhheeEE
Confidence 48889999999999999999875 499999999999998888887664
No 17
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=68.62 E-value=7.9 Score=28.33 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=41.3
Q ss_pred ccchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
-||..+|++-++.+++..++++.. |-|=-|-=|..+...-|+++++|
T Consensus 71 ~~~~~~~~~~~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~l 119 (276)
T TIGR02240 71 PYRFPGLAKLAARMLDYLDYGQVNAIGVSWGGALAQQFAHDYPERCKKL 119 (276)
T ss_pred cCcHHHHHHHHHHHHHHhCcCceEEEEECHHHHHHHHHHHHCHHHhhhe
Confidence 478888999999999998887664 99999999999999999998886
No 18
>PRK09458 pspB phage shock protein B; Provisional
Probab=68.17 E-value=11 Score=25.23 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q 034389 32 LEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLAD 73 (96)
Q Consensus 32 le~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~ 73 (96)
+=|-..+|+... |||++ -+.-|..|-.+-+||+||++
T Consensus 23 ~LHY~sk~~~~~--~Ls~~---d~~~L~~L~~~A~rm~~RI~ 59 (75)
T PRK09458 23 WLHYRSKRQGSQ--GLSQE---EQQRLAQLTEKAERMRERIQ 59 (75)
T ss_pred HHhhcccccCCC--CCCHH---HHHHHHHHHHHHHHHHHHHH
Confidence 446677899886 99965 44567788888888888886
No 19
>PRK03204 haloalkane dehalogenase; Provisional
Probab=67.65 E-value=3.9 Score=30.72 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=40.7
Q ss_pred ccchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
.|+..|+++.+..+++.++++++. |-|=-|.=|+.|.-.-|.|+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~l 129 (286)
T PRK03204 81 GYQIDEHARVIGEFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRGV 129 (286)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCEEEEEECccHHHHHHHHHhChhheeEE
Confidence 488899999999999999988654 88888889999988888888875
No 20
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=65.31 E-value=3.2 Score=27.30 Aligned_cols=47 Identities=26% Similarity=0.370 Sum_probs=39.1
Q ss_pred hccchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHHH
Q 034389 21 GVYTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRR 67 (96)
Q Consensus 21 GVYTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirr 67 (96)
..||..|+++.+..+++.=..+++. |-|--|.-|..|+...|++++.
T Consensus 45 ~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 93 (228)
T PF12697_consen 45 SPYSIEDYAEDLAELLDALGIKKVILVGHSMGGMIALRLAARYPDRVKG 93 (228)
T ss_dssp SGGSHHHHHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHHHHSGGGEEE
T ss_pred CCcchhhhhhhhhhccccccccccccccccccccccccccccccccccc
Confidence 4788889999888888887777654 9999999999999988876554
No 21
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=64.95 E-value=11 Score=28.34 Aligned_cols=47 Identities=17% Similarity=0.066 Sum_probs=39.8
Q ss_pred ccchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
.|+..|+++-++.|++..+++++. |-|--|-=|..|...-|+|+.+|
T Consensus 75 ~~~~~~~~~dl~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~l 123 (306)
T TIGR01249 75 ENTTWDLVADIEKLREKLGIKNWLVFGGSWGSTLALAYAQTHPEVVTGL 123 (306)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHHChHhhhhh
Confidence 367788898889999988887654 99999999999999999998764
No 22
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=64.94 E-value=5.7 Score=30.39 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHhhcccccc----ccCCChHHHHHHHHHhhccHHHHHH
Q 034389 25 AHDYADILEFLIGQWGSEK----LEGLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 25 a~DY~dIle~Lv~~W~ve~----l~gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
+..=+.|+++++.+++|+. ++|||.-|.=|.-..|..|++|.-+
T Consensus 78 ~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~ 125 (220)
T PF10503_consen 78 VAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAV 125 (220)
T ss_pred hhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEE
Confidence 3344578999999999995 4699999999999999999988643
No 23
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=63.18 E-value=19 Score=23.76 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=28.1
Q ss_pred HHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q 034389 31 ILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLAD 73 (96)
Q Consensus 31 Ile~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~ 73 (96)
++-|-..+|+... |||++ -++-|-.|-.+-+||+||++
T Consensus 22 l~lHY~~k~~~~~--~ls~~---d~~~L~~L~~~a~rm~eRI~ 59 (75)
T TIGR02976 22 LILHYRSKRKTAA--SLSTD---DQALLQELYAKADRLEERID 59 (75)
T ss_pred HHHHHHhhhccCC--CCCHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4567788999885 78865 33446677888888888886
No 24
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=61.62 E-value=3.3 Score=28.11 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=44.3
Q ss_pred HhhccchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHHHH
Q 034389 19 QLGVYTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 19 R~GVYTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
..-.||..|.+..++.+++.=.++++. |=|=-|.-|-.|...-|+|+.+|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~l 72 (230)
T PF00561_consen 21 DFPDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYPERVKKL 72 (230)
T ss_dssp GSCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSGGGEEEE
T ss_pred CcccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCchhhcCc
Confidence 345789999999999999999999876 99999999999999999977664
No 25
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=60.58 E-value=7.3 Score=26.98 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=38.3
Q ss_pred ccchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRR 67 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirr 67 (96)
.||..++++-+..+++..+++++. |.|--|-=|..+....|.|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~ 123 (288)
T TIGR01250 76 LWTIDYFVDELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKG 123 (288)
T ss_pred cccHHHHHHHHHHHHHHcCCCcEEEEEeehHHHHHHHHHHhCccccce
Confidence 478889999999999988887654 9999999999988887877655
No 26
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=59.14 E-value=21 Score=24.40 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=39.8
Q ss_pred hccchhhHHHHHHHHhhccccccc--cCCChHHHHHHHHHhhccHHHHHHH
Q 034389 21 GVYTAHDYADILEFLIGQWGSEKL--EGLTGEGRRAQEFVCGLAPRIRRLQ 69 (96)
Q Consensus 21 GVYTa~DY~dIle~Lv~~W~ve~l--~gLs~eg~kAqdyvc~Lp~Rirrla 69 (96)
..||..|+++.+..+++.-++.++ .|.|--|-=|..+....|+++.++.
T Consensus 59 ~~~~~~~~~~~~~~~i~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i 109 (257)
T TIGR03611 59 PGYSIAHMADDVLQLLDALNIERFHFVGHALGGLIGLQLALRYPERLLSLV 109 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHHChHHhHHhe
Confidence 358889999999999988887764 4999999999888888888777743
No 27
>PF12882 NUT_C: NUT protein C terminal; InterPro: IPR024313 This domain is found in the C-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=58.48 E-value=5.7 Score=29.54 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHhhc
Q 034389 24 TAHDYADILEFLIGQ 38 (96)
Q Consensus 24 Ta~DY~dIle~Lv~~ 38 (96)
.+++|+|||+.|+.-
T Consensus 24 avkEy~dIm~~l~g~ 38 (144)
T PF12882_consen 24 AVKEYMDIMDGLLGP 38 (144)
T ss_pred HHHHHHHHHHHhccC
Confidence 468999999999874
No 28
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=58.27 E-value=10 Score=26.98 Aligned_cols=52 Identities=17% Similarity=0.124 Sum_probs=42.8
Q ss_pred hhhhHHHHHHHHhhccchh------hHHHHHHHHhhccccccc-cCCChHHHHHHHHHhh
Q 034389 8 RLFAHFAAVAQQLGVYTAH------DYADILEFLIGQWGSEKL-EGLTGEGRRAQEFVCG 60 (96)
Q Consensus 8 ~lF~~FS~vAQR~GVYTa~------DY~dIle~Lv~~W~ve~l-~gLs~eg~kAqdyvc~ 60 (96)
.+|+.|-.+++-.+-|... .|++=++.|+.+|+|==- -.|| +.-.|++++-.
T Consensus 16 ~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl~LS-dD~~Ak~m~~q 74 (108)
T PF08855_consen 16 DIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRLELS-DDPEAKDMKEQ 74 (108)
T ss_pred HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHH
Confidence 6899999999999988765 599999999999998633 2788 77788888643
No 29
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=56.85 E-value=11 Score=30.71 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=38.3
Q ss_pred ccchhhHHHHHHHHhhccccccc--cCCChHHHHHHHHHhhccHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEKL--EGLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~l--~gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
.||..+|++.+..+++.-+++++ -|-|=-|.=|+.|...-|.|+.+|
T Consensus 177 ~ys~~~~a~~l~~~i~~l~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~l 225 (383)
T PLN03084 177 NYTLDEYVSSLESLIDELKSDKVSLVVQGYFSPPVVKYASAHPDKIKKL 225 (383)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEECHHHHHHHHHHHhChHhhcEE
Confidence 69999999999999999998876 355555777888888888777764
No 30
>PLN02965 Probable pheophorbidase
Probab=52.53 E-value=12 Score=27.16 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=38.7
Q ss_pred hccchhhHHHHHHHHhhccccc---cccCCChHHHHHHHHHhhccHHHHHH
Q 034389 21 GVYTAHDYADILEFLIGQWGSE---KLEGLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 21 GVYTa~DY~dIle~Lv~~W~ve---~l~gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
+.||..+|++-+..+++.=.+. .|-|-|=-|-=|..|..+.|+|+.++
T Consensus 50 ~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~~l 100 (255)
T PLN02965 50 TVSSSDQYNRPLFALLSDLPPDHKVILVGHSIGGGSVTEALCKFTDKISMA 100 (255)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCEEEEecCcchHHHHHHHHhCchheeEE
Confidence 4789999999888888875442 34599999999999999999998764
No 31
>PF08252 Leader_CPA1: arg-2/CPA1 leader peptide ; InterPro: IPR013203 In this family there are leaders peptides involved in the regulation of the glutaminase subunit (small subunit) of arginine-specific carbamoyl phosphate synthetase. In Neurospora crassa it is a small upstream ORF of 24 codons above the arg-2 locus []. In yeast it is the leader peptide of the CPA1 gene. The 5' region of CPA1 mRNA contains a 25 codon upstream open reading frame. The leader peptide, the product of the upstream open reading frame, plays an essential, negative role in the specific repression of CPA1 by arginine [].; PDB: 2XL1_A.
Probab=49.77 E-value=8.2 Score=20.92 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=4.0
Q ss_pred HhhccchhhHHH
Q 034389 19 QLGVYTAHDYAD 30 (96)
Q Consensus 19 R~GVYTa~DY~d 30 (96)
+..+||..||+.
T Consensus 4 ~~S~~t~qDYiS 15 (24)
T PF08252_consen 4 SPSVFTSQDYIS 15 (24)
T ss_dssp -------HHHHH
T ss_pred CcchhhHHHHHH
Confidence 457899999964
No 32
>PRK07581 hypothetical protein; Validated
Probab=48.73 E-value=23 Score=26.93 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=28.7
Q ss_pred Hhhcccccc---ccCCChHHHHHHHHHhhccHHHHHHH
Q 034389 35 LIGQWGSEK---LEGLTGEGRRAQEFVCGLAPRIRRLQ 69 (96)
Q Consensus 35 Lv~~W~ve~---l~gLs~eg~kAqdyvc~Lp~Rirrla 69 (96)
|++.=.|++ |-|.|=-|.-|+.+...-|+|+++|-
T Consensus 116 l~~~lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lv 153 (339)
T PRK07581 116 LTEKFGIERLALVVGWSMGAQQTYHWAVRYPDMVERAA 153 (339)
T ss_pred HHHHhCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhhe
Confidence 444456766 45999999999999999999999954
No 33
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=47.86 E-value=15 Score=30.48 Aligned_cols=81 Identities=19% Similarity=0.323 Sum_probs=60.7
Q ss_pred CCCchhhhHHHHHHHHhhccchhhHHHHHHHHhhccc-cccccCCChHHHHHHHHHhhccHHHHHHHHHHHHHHhh----
Q 034389 4 GHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWG-SEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKK---- 78 (96)
Q Consensus 4 G~~~~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~-ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~~r~~~---- 78 (96)
||-..-|+.||..|= =||-.-|=.+.++.+.++|+ +.++-|.. ++|-+-+-.+-.-|.++.+.++..-|+
T Consensus 126 gR~ak~yd~l~kiAP--ti~l~~d~~n~~~S~~~n~e~Lg~IFgkE---~eAk~~~~~id~~i~~~k~~a~~~~~t~m~i 200 (320)
T COG4607 126 GRAAKAYDKLSKIAP--TIDLGADTANLIESTKQNIETLGKIFGKE---EEAKELLADIDASIAAAKEKAAGKGKTALVI 200 (320)
T ss_pred cHHHHHHHHHHhhCC--eEEeccchHHHHHHHHHHHHHHHHHhCch---HHHHHHHHHHHHHHHHHHHHhhccCCeeEEE
Confidence 555678999999988 67878888999999999884 56666776 456666777788888887777654322
Q ss_pred ----------cCCCcccceeeeC
Q 034389 79 ----------LKPPRVKFSWIFN 91 (96)
Q Consensus 79 ----------~~~~~~~FsWI~~ 91 (96)
.| ..+|+|||+
T Consensus 201 l~ngGkisafGp--~SRfg~ihd 221 (320)
T COG4607 201 LVNGGKISAFGP--SSRFGWIHD 221 (320)
T ss_pred EecCCeeeeecC--CCcceeeec
Confidence 13 568999997
No 34
>COG2005 ModE N-terminal domain of molybdenum-binding protein [General function prediction only]
Probab=46.83 E-value=57 Score=23.70 Aligned_cols=62 Identities=29% Similarity=0.395 Sum_probs=49.5
Q ss_pred HHHHHHHhhc-c-chhhHHHHHHHHhhccccccccCCC-hHHHHHHHHHhhccHHHHHHHHHHHH
Q 034389 13 FAAVAQQLGV-Y-TAHDYADILEFLIGQWGSEKLEGLT-GEGRRAQEFVCGLAPRIRRLQGLADQ 74 (96)
Q Consensus 13 FS~vAQR~GV-Y-Ta~DY~dIle~Lv~~W~ve~l~gLs-~eg~kAqdyvc~Lp~RirrlaERa~~ 74 (96)
-|++|+.+|+ | .|+||++=|+++..+==|+.-+|=. +-|.+=-+|...|=+++++++..+++
T Consensus 34 Is~AAk~~GiSYk~AW~~i~~~n~~~~~plVe~~rGGk~gGga~LT~~g~~ll~~y~~l~~~~~~ 98 (130)
T COG2005 34 ISAAAKAAGISYKSAWDYIKALNRLLGEPLVERRRGGKGGGGAVLTDFGERLLEEYRLLEKEIEE 98 (130)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCeeeeccCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 5889999998 5 4899999999999998888777444 44466678888888888888876664
No 35
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=46.07 E-value=14 Score=27.71 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=20.7
Q ss_pred CCCCCCchhhh-HHHHHHHHhhccc
Q 034389 1 MYDGHDPRLFA-HFAAVAQQLGVYT 24 (96)
Q Consensus 1 M~DG~~~~lF~-~FS~vAQR~GVYT 24 (96)
+.||++|++|. ||+..+++-+-|+
T Consensus 80 IddGrNPd~ytke~le~~~~kNq~v 104 (147)
T KOG3046|consen 80 IDDGRNPDLYTKEFLEKCLAKNQYV 104 (147)
T ss_pred HhcCCCccHHHHHHHHHHHHhhhHH
Confidence 36999999995 8999999888776
No 36
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=45.05 E-value=17 Score=26.44 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=14.6
Q ss_pred cchhhHHHHHHHHhhccc
Q 034389 23 YTAHDYADILEFLIGQWG 40 (96)
Q Consensus 23 YTa~DY~dIle~Lv~~W~ 40 (96)
=|.+||.+|++||++..+
T Consensus 67 Pt~kdf~~I~~fL~~~id 84 (157)
T PF03801_consen 67 PTQKDFVEIFNFLFRQID 84 (157)
T ss_dssp --HHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 478999999999999955
No 37
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=43.43 E-value=19 Score=25.39 Aligned_cols=46 Identities=17% Similarity=0.064 Sum_probs=36.9
Q ss_pred ccchhhHHHHHHHHhhcccccc--ccCCChHHHHHHHHHhhccHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEK--LEGLTGEGRRAQEFVCGLAPRIRR 67 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~--l~gLs~eg~kAqdyvc~Lp~Rirr 67 (96)
-||-.++++-+..+++...+.. |-|.|--|.-|..+....|.|+++
T Consensus 75 ~~~~~~~~~~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 122 (278)
T TIGR03056 75 RFTLPSMAEDLSALCAAEGLSPDGVIGHSAGAAIALRLALDGPVTPRM 122 (278)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEEECccHHHHHHHHHhCCcccce
Confidence 5787888888888888777654 459999999999999888887653
No 38
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=42.69 E-value=34 Score=28.20 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=36.0
Q ss_pred hccchhhHHHHHHHHh--hccccccccCCChHHHHHHHHHhhccHHHHHHH
Q 034389 21 GVYTAHDYADILEFLI--GQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQ 69 (96)
Q Consensus 21 GVYTa~DY~dIle~Lv--~~W~ve~l~gLs~eg~kAqdyvc~Lp~Rirrla 69 (96)
|+||| ..|+.|+ +.=.+..+-|.|.-|.-.=.|||+.|-|=+|.-
T Consensus 23 gifTA----GVLD~fl~a~~~~f~~~~GvSAGA~n~~aYls~Q~gra~~~~ 69 (292)
T COG4667 23 GIFTA----GVLDEFLRANFNPFDLVVGVSAGALNLVAYLSKQRGRARRVI 69 (292)
T ss_pred ceehH----HHHHHHHHhccCCcCeeeeecHhHHhHHHHhhcCCchHHHHH
Confidence 78886 4676666 445566778999999999999999999988754
No 39
>PF01049 Cadherin_C: Cadherin cytoplasmic region; InterPro: IPR000233 Cadherins are transmembrane glycoproteins vital in calcium-dependent cell-cell adhesion during tissue differentiation []. Cadherins cluster to form foci of homophilic binding units. A key determinant to the strength of the binding that it is mediated by cadherins is the juxtamembrane region of the cadherin. This region induces clustering and also binds to the protein p120ctn []. The cytoplasmic region is highly conserved in sequence and has been shown experimentally to regulate the cell-cell binding function of the extracellular domain of E-cadherin, possibly through interaction with the cytoskeleton []. This domain is found upstream of the cadherin domain IPR002126 from INTERPRO.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2KOH_B 3IFQ_D 1I7X_D 1I7W_D 3L6Y_F 3L6X_B.
Probab=41.93 E-value=12 Score=26.97 Aligned_cols=26 Identities=15% Similarity=0.454 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHHhhccHHHHHHHHH
Q 034389 46 GLTGEGRRAQEFVCGLAPRIRRLQGL 71 (96)
Q Consensus 46 gLs~eg~kAqdyvc~Lp~RirrlaER 71 (96)
..|.++..-=+||..+.+|+++|||-
T Consensus 120 S~s~~~~~~~~~L~~wGPkF~~LAei 145 (149)
T PF01049_consen 120 SCSSDEEQDYDFLDDWGPKFRKLAEI 145 (149)
T ss_dssp ----------GGGGGS-GGGHHHHHC
T ss_pred CCCcccccCchhhhhcChhHHHHHHH
Confidence 34456666779999999999999974
No 40
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=41.89 E-value=33 Score=22.16 Aligned_cols=47 Identities=34% Similarity=0.398 Sum_probs=35.7
Q ss_pred ccchhhHHHHHHHHhhcccccc--ccCCChHHHHHHHHHhhccHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEK--LEGLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~--l~gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
.|+...|++-++.++....+++ |.|.|--|.-|..|....|.+++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~ 116 (282)
T COG0596 68 GYSLSAYADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRGL 116 (282)
T ss_pred cccHHHHHHHHHHHHHHhCCCceEEEEecccHHHHHHHHHhcchhhhee
Confidence 3455555666777777777765 5688888999999999999987775
No 41
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=41.73 E-value=25 Score=23.40 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=33.2
Q ss_pred cchhhHHHH-HHHHhhccccccc--cCCChHHHHHHHHHhhccHHHHH
Q 034389 23 YTAHDYADI-LEFLIGQWGSEKL--EGLTGEGRRAQEFVCGLAPRIRR 67 (96)
Q Consensus 23 YTa~DY~dI-le~Lv~~W~ve~l--~gLs~eg~kAqdyvc~Lp~Rirr 67 (96)
++..|+++- +..++++++.+.+ -|-|--|.=|..+....|.+++.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~ 97 (251)
T TIGR03695 50 YDFEEAAQDILATLLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQG 97 (251)
T ss_pred hhHHHHHHHHHHHHHHHcCCCeEEEEEeccHHHHHHHHHHhCchheee
Confidence 455556644 6667777777654 49999999999999988877655
No 42
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=39.06 E-value=27 Score=29.73 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=40.5
Q ss_pred ccchhhHHHHHH-HHhhcccccccc--CCChHHHHHHHHHhhccHHHHHH
Q 034389 22 VYTAHDYADILE-FLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle-~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
.||..+|++.++ .+++..++++.. |.|=-|-=|..+...-|+|+++|
T Consensus 253 ~ytl~~~a~~l~~~ll~~lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~L 302 (481)
T PLN03087 253 LYTLREHLEMIERSVLERYKVKSFHIVAHSLGCILALALAVKHPGAVKSL 302 (481)
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHhChHhccEE
Confidence 488899998884 788888888754 99999999999999999998774
No 43
>PF11897 DUF3417: Protein of unknown function (DUF3417); InterPro: IPR024517 This domain of unknown function is found at the N terminus of members of the glycogen phosphorylase family.
Probab=38.60 E-value=20 Score=25.25 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=13.1
Q ss_pred hccHHHHHHHHHHH
Q 034389 60 GLAPRIRRLQGLAD 73 (96)
Q Consensus 60 ~Lp~RirrlaERa~ 73 (96)
+||++|.+|+|.|.
T Consensus 9 ~LPe~L~~L~eLA~ 22 (118)
T PF11897_consen 9 KLPERLKPLRELAY 22 (118)
T ss_pred CCChhhhhHHHHHh
Confidence 69999999999998
No 44
>PF12411 Choline_sulf_C: Choline sulfatase enzyme C terminal
Probab=37.41 E-value=17 Score=22.86 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=13.4
Q ss_pred HHHHHHHhhccchhhHH
Q 034389 13 FAAVAQQLGVYTAHDYA 29 (96)
Q Consensus 13 FS~vAQR~GVYTa~DY~ 29 (96)
|--.|-+.|.||++||.
T Consensus 13 ~V~~AL~~G~~~~WDyq 29 (54)
T PF12411_consen 13 FVYSALKQGRFTSWDYQ 29 (54)
T ss_pred HHHHHHHcCCCCCCCCC
Confidence 44557788999999995
No 45
>TIGR03418 chol_sulf_TF putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.
Probab=37.06 E-value=1.3e+02 Score=21.99 Aligned_cols=61 Identities=26% Similarity=0.218 Sum_probs=41.0
Q ss_pred hHHHHHHHHhhccc--hhhHHHHHHH-----HhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q 034389 11 AHFAAVAQQLGVYT--AHDYADILEF-----LIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLAD 73 (96)
Q Consensus 11 ~~FS~vAQR~GVYT--a~DY~dIle~-----Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~ 73 (96)
.+||.||++++|=- ..=.+.=||. |..| -..--.||++|+.=.+|+..+=.-+.++.+.++
T Consensus 16 gs~s~AA~~L~itqpavS~~Ik~LE~~lg~~LF~R--~~r~~~lT~~G~~l~~~a~~il~~~~~~~~~~~ 83 (291)
T TIGR03418 16 ASFTAAARELGSTQPAVSQQVKRLEEELGTPLFER--GHRGIELTEDGQRLFEAVRAGLDTIDLATAQLR 83 (291)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCcHHhhc--CCCceeEcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999842 2333333443 2222 122347999999999999888777777777765
No 46
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=36.74 E-value=28 Score=23.06 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=22.0
Q ss_pred hHHHHHHHHhhc-----cccccccCCChHHHHHHHHHhhccHH
Q 034389 27 DYADILEFLIGQ-----WGSEKLEGLTGEGRRAQEFVCGLAPR 64 (96)
Q Consensus 27 DY~dIle~Lv~~-----W~ve~l~gLs~eg~kAqdyvc~Lp~R 64 (96)
++-+|+.+|+.+ =..++|.+.+..-++++.+|..||.|
T Consensus 21 ~~~~v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~R 63 (90)
T cd08332 21 VLDELLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKR 63 (90)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 455566777654 11233445555566777777777765
No 47
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=35.80 E-value=25 Score=20.42 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=28.7
Q ss_pred HHHHHhhccccccccCCChHHHHHHHHHhhccHHHHH
Q 034389 31 ILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRR 67 (96)
Q Consensus 31 Ile~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~Rirr 67 (96)
.++++.+..++.+..|-+.-.+++..+|-++|+-+.|
T Consensus 5 ~~~~l~~~~dl~~~egk~~~~~~~~~~i~~i~~~i~r 41 (59)
T PF10410_consen 5 LIERLSKGYDLDTPEGKAEAVREAAPLIAQIPDPIER 41 (59)
T ss_dssp HHHHHGGGS-TTSHHHHHHHHHHHHHHHTT--SHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3678888888888888888888999999999988766
No 48
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=33.27 E-value=39 Score=26.45 Aligned_cols=47 Identities=13% Similarity=0.081 Sum_probs=36.1
Q ss_pred ccchhhHHHHHHHHhhccccccc--cCCChHHHHHHHHHhh-ccHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEKL--EGLTGEGRRAQEFVCG-LAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~l--~gLs~eg~kAqdyvc~-Lp~Rirrl 68 (96)
-||..++++.+..+++.-.+++. -|.|=-|.=|..+... -|+|+++|
T Consensus 135 ~~~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~L 184 (360)
T PLN02679 135 SYTMETWAELILDFLEEVVQKPTVLIGNSVGSLACVIAASESTRDLVRGL 184 (360)
T ss_pred cccHHHHHHHHHHHHHHhcCCCeEEEEECHHHHHHHHHHHhcChhhcCEE
Confidence 47888999999888888887775 4888888777777663 47777664
No 49
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=32.27 E-value=14 Score=23.79 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=13.7
Q ss_pred HHHHHHHhhccchhhHH
Q 034389 13 FAAVAQQLGVYTAHDYA 29 (96)
Q Consensus 13 FS~vAQR~GVYTa~DY~ 29 (96)
-|.+||++|+..+-=||
T Consensus 41 ~S~IAk~l~i~~pG~YA 57 (61)
T PRK08351 41 NSRIAKKLGAKVPGKYA 57 (61)
T ss_pred HhHHHHHhCCCCCCeEE
Confidence 58999999998776554
No 50
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=31.80 E-value=41 Score=25.43 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=37.8
Q ss_pred hhhhHH-HHHHHHhhccchhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHH
Q 034389 8 RLFAHF-AAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGL 71 (96)
Q Consensus 8 ~lF~~F-S~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaER 71 (96)
.+|.+| ..+|+.++.=...+.++.++.+.+.|+.-....+..--.+....+-++.+++++|++.
T Consensus 244 ~l~a~fL~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~k~~~~~~~~~~~~i~~~l~~i~~~ 308 (317)
T PF14399_consen 244 NLYADFLQEAAELLGNPELAEAAELFEEIAQLWRQLANLLVKASLSKSPDDLEEIADILEKIAEL 308 (317)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 344444 3444555554567889999999999987654322211112226667777777776654
No 51
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=31.62 E-value=35 Score=24.09 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=24.6
Q ss_pred hHHHHHHHHhhcccccccc-CC--------ChHHHHHHHHHhhccHHH
Q 034389 27 DYADILEFLIGQWGSEKLE-GL--------TGEGRRAQEFVCGLAPRI 65 (96)
Q Consensus 27 DY~dIle~Lv~~W~ve~l~-gL--------s~eg~kAqdyvc~Lp~Ri 65 (96)
.-++-+..|+++|+++.+- || ++.+++++.|.-.|-.++
T Consensus 38 ~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~ 85 (135)
T PF03652_consen 38 KDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRF 85 (135)
T ss_dssp CCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhc
Confidence 4466788899999999874 55 334555555544444443
No 52
>PRK11062 nhaR transcriptional activator NhaR; Provisional
Probab=30.96 E-value=2e+02 Score=21.46 Aligned_cols=61 Identities=8% Similarity=0.025 Sum_probs=44.2
Q ss_pred hHHHHHHHHhhccchhhHHHHHHHHhhccccccc------cCCChHHHHHHHHHhhccHHHHHHHHHH
Q 034389 11 AHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKL------EGLTGEGRRAQEFVCGLAPRIRRLQGLA 72 (96)
Q Consensus 11 ~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l------~gLs~eg~kAqdyvc~Lp~RirrlaERa 72 (96)
.+||.||+++||=.+. =..-|..|=++.++.=+ --||++|+.-..++.++=..+..+.+.+
T Consensus 19 gs~s~AA~~L~isqpa-vS~~I~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~~il~~~~~~~~~~ 85 (296)
T PRK11062 19 GSVVGAAEALFLTPQT-ITGQIKALEERLQGKLFKRKGRGLEPTELGELVFRYADKMFTLSQEMLDIV 85 (296)
T ss_pred CCHHHHHHHhCCChHH-HHHHHHHHHHHcCccceeecCCceeECHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999985543 34445566666666533 2699999999999988888877777654
No 53
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=30.86 E-value=52 Score=23.12 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=31.1
Q ss_pred HHHHHHHhhccccccccCCChHHHHHHHHHhhc-cHHHHHHH
Q 034389 29 ADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGL-APRIRRLQ 69 (96)
Q Consensus 29 ~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~L-p~Rirrla 69 (96)
.++++...+.++ |.+.+||+|+++..+=++.+ |+=+..+.
T Consensus 42 ~~~~~~~~~~l~-e~l~~Lt~e~k~~W~E~~~~fP~~~~~l~ 82 (113)
T PF05388_consen 42 NSLLEKISKYLN-EPLKSLTSEAKALWDEMMLLFPDAVSQLK 82 (113)
T ss_pred hhHHHHHHHHHH-HHHhhccHHHHHHHHHHHHHCcHHHHhCc
Confidence 345555555555 88889999999999999886 98877665
No 54
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=30.44 E-value=23 Score=27.21 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=25.5
Q ss_pred CCchhhhHHHHHHHHhhccch-hhHHHHHHHHhh
Q 034389 5 HDPRLFAHFAAVAQQLGVYTA-HDYADILEFLIG 37 (96)
Q Consensus 5 ~~~~lF~~FS~vAQR~GVYTa-~DY~dIle~Lv~ 37 (96)
+-.+.|+||++..==.-||.+ .+|-+.|..++.
T Consensus 142 Ri~~vF~~f~~~efL~~lf~~~~~~~~~L~~i~~ 175 (186)
T PF05527_consen 142 RIDHVFNFFSDPEFLDALFSPDEEYRDHLGKICD 175 (186)
T ss_dssp HHHHHHHHHT-HHHHHHHTSG--GGHHHHHHHHH
T ss_pred HHHHHHHhhCChHHHHHHhCcccchHHHHHHHHH
Confidence 445899999999988899998 478887777764
No 55
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=30.34 E-value=81 Score=22.07 Aligned_cols=37 Identities=32% Similarity=0.474 Sum_probs=26.1
Q ss_pred HHHHHHHhhcccccccc-CC--------ChHHHHHHHHHhhccHHH
Q 034389 29 ADILEFLIGQWGSEKLE-GL--------TGEGRRAQEFVCGLAPRI 65 (96)
Q Consensus 29 ~dIle~Lv~~W~ve~l~-gL--------s~eg~kAqdyvc~Lp~Ri 65 (96)
.+-+..+++.|+++.+- || |+.++++++|.-.|-.++
T Consensus 37 ~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~ 82 (130)
T TIGR00250 37 WSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRF 82 (130)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHh
Confidence 46788899999999875 63 445666777766665443
No 56
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=30.27 E-value=62 Score=23.54 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=28.1
Q ss_pred HHHhhccchhhH----HHHHHHHhhcccccccc-CCC--------hHHHHHHHHHhhccHHH
Q 034389 17 AQQLGVYTAHDY----ADILEFLIGQWGSEKLE-GLT--------GEGRRAQEFVCGLAPRI 65 (96)
Q Consensus 17 AQR~GVYTa~DY----~dIle~Lv~~W~ve~l~-gLs--------~eg~kAqdyvc~Lp~Ri 65 (96)
|+=+++-...+. .+-+..|++.|++..+- ||. .-+++++.|...|-.|+
T Consensus 26 A~pl~~i~~~~~~~~~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~ 87 (141)
T COG0816 26 ASPLETIKRKNGKPQDFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRF 87 (141)
T ss_pred ccchhhheeccccHhhHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 333444444443 34578899999999875 553 12344555555555444
No 57
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=29.81 E-value=44 Score=26.24 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=31.5
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHHHHHhhcCC
Q 034389 45 EGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLKP 81 (96)
Q Consensus 45 ~gLs~eg~kAqdyvc~Lp~RirrlaERa~~r~~~~~~ 81 (96)
.+|++||.-+..=+-++|+=|+=|-+|+++|-.+.++
T Consensus 91 ~~l~eeGvL~EAefyn~~~li~likd~i~dRd~~~tq 127 (210)
T KOG2715|consen 91 NKLSEEGVLEEAEFYNDPSLIQLIKDRIQDRDAMVTQ 127 (210)
T ss_pred hhhhhhccchhhhccCChHHHHHHHHHHHHHhhhccc
Confidence 4799999988888889999999999999999655543
No 58
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=29.70 E-value=28 Score=26.85 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHHHhhccchhhHHHHHHHHhhcc-ccccccCCChHHHH
Q 034389 13 FAAVAQQLGVYTAHDYADILEFLIGQW-GSEKLEGLTGEGRR 53 (96)
Q Consensus 13 FS~vAQR~GVYTa~DY~dIle~Lv~~W-~ve~l~gLs~eg~k 53 (96)
||.=..|++-.|..+|.+.++++...| +++.+.| |.++.-
T Consensus 48 Fs~~~~~~~~vt~~~~~~~v~~~~~~~~~~~~~G~-t~y~~v 88 (200)
T PF10138_consen 48 FSTEFDRLPDVTLDNYEGYVDELHAGLPDWGRMGG-TNYAPV 88 (200)
T ss_pred eCCCCCcCCCcCHHHHHHHHHHHhccccccCCCCC-cchHHH
Confidence 556677899999999999999999988 6666656 766543
No 59
>TIGR02224 recomb_XerC tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK.
Probab=29.68 E-value=95 Score=22.08 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHhhccchhhHHHHHHHHhhcccc----ccccCCChHHHHHHHHHhhcc
Q 034389 9 LFAHFAAVAQQLGVYTAHDYADILEFLIGQWGS----EKLEGLTGEGRRAQEFVCGLA 62 (96)
Q Consensus 9 lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~v----e~l~gLs~eg~kAqdyvc~Lp 62 (96)
.|.+|-...+++.-.|..+|...++++++...- ..+..|+. ...++|+..+.
T Consensus 2 ~f~~~~~~~~~~s~~T~~~y~~~~~~~~~~~~~~~~~~~~~~l~~--~~i~~~~~~~~ 57 (295)
T TIGR02224 2 AFLEYLRVERNYSPHTVRAYRRDLKAFLEFLEEEGGLASLAEVTA--ADLRSFLAELH 57 (295)
T ss_pred cHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhcCCCCccccCcH--HHHHHHHHHhc
Confidence 467777767788999999999999998864432 24556664 57788887765
No 60
>COG3668 ParE Plasmid stabilization system protein [General function prediction only]
Probab=29.47 E-value=90 Score=20.02 Aligned_cols=36 Identities=22% Similarity=0.489 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHH
Q 034389 26 HDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGL 71 (96)
Q Consensus 26 ~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaER 71 (96)
.|.-+|.+++...|+.+ .|+.|+-.|..-+..|++-
T Consensus 12 ~dl~~I~~~~~~~~g~~----------~A~~~~~~l~~~~~~L~~~ 47 (98)
T COG3668 12 ADLEDIADYIARRFGPS----------AARRYVRALETAFESLAEF 47 (98)
T ss_pred HHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHHHhhC
Confidence 58889999998777654 6899999999988888753
No 61
>PLN02578 hydrolase
Probab=28.44 E-value=55 Score=25.44 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=37.4
Q ss_pred ccchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
-||..+|++-+..+++....+... |-|--|.=|..+....|.++++|
T Consensus 132 ~~~~~~~a~~l~~~i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~l 180 (354)
T PLN02578 132 EYDAMVWRDQVADFVKEVVKEPAVLVGNSLGGFTALSTAVGYPELVAGV 180 (354)
T ss_pred ccCHHHHHHHHHHHHHHhccCCeEEEEECHHHHHHHHHHHhChHhcceE
Confidence 488888877777777766555544 99999999999999999988776
No 62
>PRK10094 DNA-binding transcriptional activator AllS; Provisional
Probab=28.31 E-value=2.5e+02 Score=21.19 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=46.6
Q ss_pred hHHHHHHHHhhccchhhHHHHHHHHhhccccccc------cCCChHHHHHHHHHhhccHHHHHHHHHHHHH
Q 034389 11 AHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKL------EGLTGEGRRAQEFVCGLAPRIRRLQGLADQR 75 (96)
Q Consensus 11 ~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l------~gLs~eg~kAqdyvc~Lp~RirrlaERa~~r 75 (96)
.+||.||+++|+=.+ =-..-|..|=...++.=+ .-||++|+.-.++.-.+=..+..+.+.++..
T Consensus 17 gs~s~AA~~L~iSQp-avS~~I~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~~il~~~~~~~~~~~~~ 86 (308)
T PRK10094 17 GSFSKAAERLCKTTA-TISYRIKLLEENTGVALFFRTTRSVTLTAAGEHLLSQARDWLSWLESMPSELQQV 86 (308)
T ss_pred CCHHHHHHHhcCCHH-HHHHHHHHHHHHhCCEEEeeCCCceeECHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999998433 344455556556665433 2689999999999999888888888777643
No 63
>PF07120 DUF1376: Protein of unknown function (DUF1376); InterPro: IPR010781 This entry is represented by Bacteriophage PBC5 (Sinorhizobium phage PBC5), Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.
Probab=27.96 E-value=54 Score=21.34 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=29.8
Q ss_pred chhhhHHHHHHHHhhccchhhHHHHHHHHhhccccccccCC
Q 034389 7 PRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGL 47 (96)
Q Consensus 7 ~~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l~gL 47 (96)
+.|.++.+..|..+|. ++.....+++.|+..|.+..=.++
T Consensus 37 ~plp~d~~~Lar~~~~-s~~~~~~a~~~ll~~f~~~~dg~~ 76 (88)
T PF07120_consen 37 GPLPDDDKRLARICGC-STKEWRKALDFLLREFFRLEDGRW 76 (88)
T ss_pred CCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCCCCCE
Confidence 4566778888888887 778889999999999874433344
No 64
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.85 E-value=31 Score=28.63 Aligned_cols=57 Identities=19% Similarity=0.398 Sum_probs=46.2
Q ss_pred HHHHHHHhhccchhhHHHHHHHHhhccccc----cccCCChHHHHHHHHHhhccHHHHHHH
Q 034389 13 FAAVAQQLGVYTAHDYADILEFLIGQWGSE----KLEGLTGEGRRAQEFVCGLAPRIRRLQ 69 (96)
Q Consensus 13 FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve----~l~gLs~eg~kAqdyvc~Lp~Rirrla 69 (96)
|--...+.|+=-+-+-...+++|+..-.|+ =+||||.-|+=|--.+|.-|+.+--++
T Consensus 113 ~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A 173 (312)
T COG3509 113 FGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIA 173 (312)
T ss_pred CCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCccccccee
Confidence 333444566666777889999999999999 368999999999999999998887654
No 65
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=27.46 E-value=73 Score=20.72 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=21.2
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHhhc
Q 034389 12 HFAAVAQQLGVYTAHDYADILEFLIGQ 38 (96)
Q Consensus 12 ~FS~vAQR~GVYTa~DY~dIle~Lv~~ 38 (96)
|...+|+++ -++..|--.+|++|+..
T Consensus 67 ~v~~I~~~l-~~~~~~v~~al~~L~~e 92 (102)
T PF08784_consen 67 HVDEIAQQL-GMSENEVRKALDFLSNE 92 (102)
T ss_dssp EHHHHHHHS-TS-HHHHHHHHHHHHHT
T ss_pred cHHHHHHHh-CcCHHHHHHHHHHHHhC
Confidence 577899999 77999999999999864
No 66
>PRK10515 hypothetical protein; Provisional
Probab=27.38 E-value=1e+02 Score=21.38 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=8.9
Q ss_pred CCCcccceeeeCc
Q 034389 80 KPPRVKFSWIFNR 92 (96)
Q Consensus 80 ~~~~~~FsWI~~r 92 (96)
|.....|||..+-
T Consensus 72 p~~~~TfsWSa~~ 84 (90)
T PRK10515 72 PDTEATFSWSANT 84 (90)
T ss_pred CCcccceeeccCC
Confidence 4334899998763
No 67
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=27.36 E-value=1.1e+02 Score=20.39 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHhhccchhhHHHHHHHHhhccccc
Q 034389 8 RLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSE 42 (96)
Q Consensus 8 ~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve 42 (96)
.++..++.+++++|+ |+.++++-+...|++.
T Consensus 20 af~Nel~~lce~~gi----D~~~V~~~~~~d~ri~ 50 (96)
T PF00984_consen 20 AFANELARLCEKLGI----DVYEVIEAANTDPRIG 50 (96)
T ss_dssp HHHHHHHHHHHHHTS----BHHHHHHHHHTSTTTT
T ss_pred HHHHHHHHHHHHcCC----CHHHHHHHHccCcccc
Confidence 356788999999996 9999999999999998
No 68
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=26.81 E-value=53 Score=23.25 Aligned_cols=49 Identities=35% Similarity=0.451 Sum_probs=30.7
Q ss_pred HHHhhccchhh---HHHHHHHHhhcccccccc-CC--------ChHHHHHHHHHhhccHHH
Q 034389 17 AQQLGVYTAHD---YADILEFLIGQWGSEKLE-GL--------TGEGRRAQEFVCGLAPRI 65 (96)
Q Consensus 17 AQR~GVYTa~D---Y~dIle~Lv~~W~ve~l~-gL--------s~eg~kAqdyvc~Lp~Ri 65 (96)
|+-++|....+ -.+=+..++++|+++.+- || |+.++++++|.-+|-.++
T Consensus 28 a~pl~~i~~~~~~~~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~ 88 (138)
T PRK00109 28 AQPLETIKRNNGTPDWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRF 88 (138)
T ss_pred EcCEEEEEcCCCchHHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHh
Confidence 33444554444 246677799999999874 63 445566677766665543
No 69
>smart00070 GLUCA Glucagon like hormones.
Probab=26.36 E-value=91 Score=16.91 Aligned_cols=14 Identities=43% Similarity=0.845 Sum_probs=8.4
Q ss_pred hccchhhHHHHHHHH
Q 034389 21 GVYTAHDYADILEFL 35 (96)
Q Consensus 21 GVYTa~DY~dIle~L 35 (96)
|+|| .||-.+++.+
T Consensus 4 g~ft-sdysk~L~~~ 17 (27)
T smart00070 4 GTFT-SDYSKYLDQL 17 (27)
T ss_pred cccc-HHHHHHHHHH
Confidence 3444 5777777654
No 70
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=26.35 E-value=60 Score=22.66 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=36.1
Q ss_pred cchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHH-HHH
Q 034389 23 YTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPR-IRR 67 (96)
Q Consensus 23 YTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~R-irr 67 (96)
++..+|++-+..+++...++... |-|=-|-=|..+....|++ +.+
T Consensus 47 ~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~ 94 (242)
T PRK11126 47 DGFADVSRLLSQTLQSYNILPYWLVGYSLGGRIAMYYACQGLAGGLCG 94 (242)
T ss_pred cCHHHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCCcccccE
Confidence 46678888888899888887664 9999999999998888654 554
No 71
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=26.02 E-value=78 Score=22.87 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.9
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHhhc
Q 034389 12 HFAAVAQQLGVYTAHDYADILEFLIGQ 38 (96)
Q Consensus 12 ~FS~vAQR~GVYTa~DY~dIle~Lv~~ 38 (96)
=|+.|-+++.-++..+|-++|..||..
T Consensus 86 v~~~a~~~l~~~~~~~Y~~~l~~li~~ 112 (198)
T PRK03963 86 VLEAVRERLAELPEDEYFETLKALTKE 112 (198)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 478899999999999999999999763
No 72
>PF11656 DUF3811: YjbD family (DUF3811); InterPro: IPR020317 This entry contains proteins with no known function.
Probab=25.89 E-value=1e+02 Score=21.27 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=18.2
Q ss_pred HHHhhccHHHHHHHHH--HHHHHhhcCCCcccceeeeC
Q 034389 56 EFVCGLAPRIRRLQGL--ADQRAKKLKPPRVKFSWIFN 91 (96)
Q Consensus 56 dyvc~Lp~RirrlaER--a~~r~~~~~~~~~~FsWI~~ 91 (96)
+|+-+|..--.+.+-. ++.+..+..|....|||-.+
T Consensus 43 e~i~ki~~ere~~aKkar~ekkk~k~~ps~~TfsWSa~ 80 (87)
T PF11656_consen 43 EIIDKIMAEREKAAKKARAEKKKNKVKPSSATFSWSAS 80 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecccC
Confidence 4555554444443322 22233334446789999543
No 73
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=25.84 E-value=20 Score=27.11 Aligned_cols=43 Identities=28% Similarity=0.426 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHH
Q 034389 26 HDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQ 69 (96)
Q Consensus 26 ~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~Rirrla 69 (96)
+||++=|+..|+. .=-+|..||..=..-|=|+++|..|..+|+
T Consensus 107 ~~~~e~i~~~v~~-Gn~Sl~~lsr~l~~sp~firglAKRs~~L~ 149 (160)
T PF09824_consen 107 RDYVEKIEKEVEA-GNTSLSDLSRKLGISPVFIRGLAKRSPKLD 149 (160)
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHhCCCHHHHHHHHHhccCcc
Confidence 5788888888887 444556666666677889999999888776
No 74
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=25.52 E-value=77 Score=25.96 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=28.0
Q ss_pred chhhhHHHHHHHHhhccchhhHHHHHHHHhhcc
Q 034389 7 PRLFAHFAAVAQQLGVYTAHDYADILEFLIGQW 39 (96)
Q Consensus 7 ~~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W 39 (96)
+.+|++|..+..++++ |-.-|.+|+..|-..=
T Consensus 298 ~~~y~~y~~~~~~~~~-~~~~~~~ii~~L~~lg 329 (366)
T COG1474 298 GELYDVYESLCERLRT-SQRRFSDIISELEGLG 329 (366)
T ss_pred HHHHHHHHHHHhhhCc-hHHHHHHHHHHHHhcC
Confidence 5899999999999999 9999999999886443
No 75
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=25.52 E-value=2.8e+02 Score=20.44 Aligned_cols=60 Identities=22% Similarity=0.171 Sum_probs=41.3
Q ss_pred hHHHHHHHHhhccc--hhhHHHHHHHHhhccccccc------cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q 034389 11 AHFAAVAQQLGVYT--AHDYADILEFLIGQWGSEKL------EGLTGEGRRAQEFVCGLAPRIRRLQGLAD 73 (96)
Q Consensus 11 ~~FS~vAQR~GVYT--a~DY~dIle~Lv~~W~ve~l------~gLs~eg~kAqdyvc~Lp~RirrlaERa~ 73 (96)
.+||.||+++|+=- ..-.+.-||. ..+++=+ --||++|+.-.+|.-.+=..+.++.+.+.
T Consensus 16 gs~s~AA~~L~isqpavS~~I~~LE~---~lG~~LF~R~~r~~~lT~~G~~l~~~a~~~l~~~~~~~~~~~ 83 (275)
T PRK03601 16 RHFGRAAESLYLTQSAVSFRIRQLEN---QLGVNLFTRHRNNIRLTAAGERLLPYAETLMNTWQAAKKEVA 83 (275)
T ss_pred CCHHHHHHHhCCChHHHHHHHHHHHH---HhCCceEEECCCceEECHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999842 3344444544 3344322 25899999999998888777777766554
No 76
>PHA02446 hypothetical protein
Probab=25.32 E-value=39 Score=25.23 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=23.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHhhcCCCcccceeee
Q 034389 53 RAQEFVCGLAPRIRRLQGLADQRAKKLKPPRVKFSWIF 90 (96)
Q Consensus 53 kAqdyvc~Lp~RirrlaERa~~r~~~~~~~~~~FsWI~ 90 (96)
---+||-+||+--|- +....-....|...-||.||.
T Consensus 124 ~vw~ylt~lpe~~rt--qllmaalagipdvedpfawit 159 (166)
T PHA02446 124 GVWDYLTKLPEDQRT--QLLMAALAGIPDVEDPFAWIT 159 (166)
T ss_pred cHHHHHhhCCchHHH--HHHHHHHcCCCCccCchHHHH
Confidence 468999999985432 112222334788888999996
No 77
>PRK13716 leader peptide RepL; Provisional
Probab=25.30 E-value=31 Score=18.88 Aligned_cols=13 Identities=46% Similarity=0.976 Sum_probs=9.8
Q ss_pred HHHHH-HhhccHHH
Q 034389 53 RAQEF-VCGLAPRI 65 (96)
Q Consensus 53 kAqdy-vc~Lp~Ri 65 (96)
|-||| ||.|-.++
T Consensus 4 kvqd~flcsll~~~ 17 (26)
T PRK13716 4 KVQDFFLCSLLLRI 17 (26)
T ss_pred chhhhhhhhhhhhh
Confidence 67887 99987654
No 78
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=25.03 E-value=56 Score=29.59 Aligned_cols=41 Identities=34% Similarity=0.502 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHhhccccc------------cccCCChHHHHHHHHHhhccHHHHHHH
Q 034389 25 AHDYADILEFLIGQWGSE------------KLEGLTGEGRRAQEFVCGLAPRIRRLQ 69 (96)
Q Consensus 25 a~DY~dIle~Lv~~W~ve------------~l~gLs~eg~kAqdyvc~Lp~Rirrla 69 (96)
+.||+-|||.|+-.=.-+ ++-.+ .+|.+|++.|..=|+||+
T Consensus 132 P~~faYIieELL~~~~~~~nk~~Yy~~Ii~tII~~----~~a~~fI~al~~lIqrL~ 184 (640)
T PF06874_consen 132 PKDFAYIIEELLHEDDEDDNKKAYYNQIIDTIIEL----GRADEFIIALSELIQRLA 184 (640)
T ss_pred CHhHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHh
Confidence 689999999998543311 11122 259999999999999987
No 79
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=24.80 E-value=1.1e+02 Score=19.51 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=28.9
Q ss_pred cchhhHHHHHHHHhhccccccccCCChHHHHHHHHHhh-ccHHHHHHH
Q 034389 23 YTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG-LAPRIRRLQ 69 (96)
Q Consensus 23 YTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~-Lp~Rirrla 69 (96)
=|+..|..|-++++..|....-.-||- ..|+.-+-+ =+.-+.|+=
T Consensus 30 ~~p~~Yl~iRn~il~~w~~n~~~~lt~--~~~~~~i~~~d~~~~~ri~ 75 (86)
T PF04433_consen 30 KTPEQYLKIRNTILAEWRKNPNKYLTK--TDARKLIKGIDVNKIRRIY 75 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTS---H--HHHHHHTTSSSHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCCcccH--HHHHHHccccCHHHHHHHH
Confidence 367899999999999998876667773 355555552 444444443
No 80
>CHL00181 cbbX CbbX; Provisional
Probab=24.78 E-value=2.8e+02 Score=21.69 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=37.7
Q ss_pred HHHHHHhh------ccchhhHHHHHHHHhhccccccccCCChHHHHH-HHHHhhc--------cHHHHHHHHHHHHH
Q 034389 14 AAVAQQLG------VYTAHDYADILEFLIGQWGSEKLEGLTGEGRRA-QEFVCGL--------APRIRRLQGLADQR 75 (96)
Q Consensus 14 S~vAQR~G------VYTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kA-qdyvc~L--------p~RirrlaERa~~r 75 (96)
.+...|+. -||..+...|++.++++.+.. |++++..+ .+|+... ...+|++-|++..+
T Consensus 181 p~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~----l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 181 PGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQ----LTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 45566754 599999999999999987543 67776543 4454432 14456666665443
No 81
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=24.55 E-value=1.4e+02 Score=23.52 Aligned_cols=54 Identities=26% Similarity=0.287 Sum_probs=37.9
Q ss_pred hHHHHHHHHhhcc--------chhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHHHH
Q 034389 11 AHFAAVAQQLGVY--------TAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQ 74 (96)
Q Consensus 11 ~~FS~vAQR~GVY--------Ta~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~~ 74 (96)
+.|...|+-+|+- .+.|-++-|+.|++.+++.. .|++-|=. ++.+.+|+|.+.+
T Consensus 289 ~~~~~l~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~lglp~--~l~~~gi~--------~~~l~~ia~~a~~ 350 (366)
T PF00465_consen 289 EKLARLAKALGVDTEGGSAEEAADDAIDELRALLRSLGLPT--RLSDLGID--------EEDLDEIAEAALA 350 (366)
T ss_dssp HHHHHHHHHTTHCTTS-HHHHHHHHHHHHHHHHHHHTT--S--SGGGGT-T--------GGGHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCccCCCHHHHHHHHHHHHHHHHHHhCCCC--CHHHcCCC--------HHHHHHHHHHHHh
Confidence 5688899999998 47899999999999999887 33332221 2557777777763
No 82
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=24.53 E-value=89 Score=25.33 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=29.4
Q ss_pred cchhhHHHHHHHHhhccccccccCCChHHHHHH
Q 034389 23 YTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQ 55 (96)
Q Consensus 23 YTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kAq 55 (96)
+|..|+.+|++.++.+=++.=.|.+|+|=.++-
T Consensus 57 Kt~eqi~~i~~~~~~~~~~~l~tR~~~e~~~~l 89 (254)
T COG1691 57 KTPEQIVEIVEVLLEKNGIALATRVSPELLEAL 89 (254)
T ss_pred CCHHHHHHHHHHHHHcCCeeeeecCCHHHHHHh
Confidence 799999999999999999999999998766653
No 83
>PF00522 VPR: VPR/VPX protein; InterPro: IPR000012 Human immunodeficiency virus (HIV) is the human retrovirus associated with AIDS (acquired immune deficiency syndrome), and SIV its simian counterpart. Three main groups of primate lentivirus are known, designated Human immunodeficiency virus 1 (HIV-1), Human immunodeficiency virus 2 (HIV-2)/Simian immunodeficiency virus - mac (SIVMAC)/Simian immunodeficiency virus - sm (SIVSM) and Simian immunodeficiency virus - agm (SIVAGM). Simian immunodeficiency virus - mnd (SIVMND) has been suggested to represent a fourth distinct group []. These groups are believed to have diverged from a common ancestor long before the spread of AIDS in humans. Genetic variation in HIV-1 and HIV-2 has been studied extensively, and the nucleotide sequences reported for several strains []. ORF analysis has revealed two open reading frames, yielding the so-called R- and X-ORF proteins, which show a high degree of sequence similarity. Vpx plays a role in nuclear translocation of the viral pre-integration complex (PIC) and is thus required for the virus to infect non-dividing cells. Vpr also plays a role in nuclear translocation of the (PIC) and may target specific host proteins for degradation by the 26S proteasome. It acts by associating with the cellular CUL4A-DDB1 E3 ligase complex through direct interaction with host VPRPB/DCAF-1. This would result in cell cycle arrest or apoptosis in infected cells, creating a favourable environment for maximizing viral expression and production by rendering the HIV-1 LTR transcription more active.; GO: 0019058 viral infectious cycle, 0042025 host cell nucleus; PDB: 1VPC_A 1X9V_B 1ESX_A 1CEU_A 1M8L_A 1DSJ_A 1BDE_A 1DSK_A 1FI0_A.
Probab=24.29 E-value=57 Score=22.70 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=10.9
Q ss_pred hccchhhHHHHHHHHh
Q 034389 21 GVYTAHDYADILEFLI 36 (96)
Q Consensus 21 GVYTa~DY~dIle~Lv 36 (96)
=.||+.+|+.||+.++
T Consensus 61 ~~~~v~~~irilQ~aL 76 (96)
T PF00522_consen 61 WSYTVYAYIRILQQAL 76 (96)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3689999999999875
No 84
>PF09524 Phg_2220_C: Conserved phage C-terminus (Phg_2220_C); InterPro: IPR011741 This entry is represented by the C-terminal domain of Bacteriophage r1t, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=24.28 E-value=62 Score=21.32 Aligned_cols=22 Identities=18% Similarity=0.613 Sum_probs=19.9
Q ss_pred ccchhhHHHHHHHHhhcccccc
Q 034389 22 VYTAHDYADILEFLIGQWGSEK 43 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~ve~ 43 (96)
=||..|...+++..+..|.=..
T Consensus 31 G~t~edf~~VID~k~~~W~~~~ 52 (74)
T PF09524_consen 31 GYTLEDFKKVIDNKVAEWKGDP 52 (74)
T ss_pred CCCHHHHHHHHHHHHHHHCCCH
Confidence 4999999999999999998665
No 85
>PF02106 Fanconi_C: Fanconi anaemia group C protein; InterPro: IPR000686 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy. Four complementation groups have been identified, designated A to D. The gene for group C (FACC) has been cloned. Expression of the FACC cDNA corrects the phenotypic defect of FA(C) cells, resulting in normalized cell growth in the presence of DNA cross-linking agents such as mitomycin C (MMC). Gene transfer of the FACC gene should provide a survival advantage to transduced hematopoietic cells, suggesting that FA might be an ideal candidate for gene therapy []. The function of the FACC gene is not known. Immunofluorescence and sub-cellular fractionation studies of human cell lines, and COS-7 cells transiently expressing human FACC, showed the protein to be located primarily in the cytoplasm. Yet, placement of a nuclear localisation signal at the N terminus of FACC directed the hybrid protein to the nuclei of transfected COS-7 cells. Such findings suggest an indirect role for FACC in regulating DNA repair in this group of Fanconi anaemia [].; GO: 0006281 DNA repair
Probab=23.97 E-value=77 Score=28.33 Aligned_cols=53 Identities=28% Similarity=0.470 Sum_probs=34.1
Q ss_pred hHHHHHHHHhhccchhhHHH-----HHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHH
Q 034389 11 AHFAAVAQQLGVYTAHDYAD-----ILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGL 71 (96)
Q Consensus 11 ~~FS~vAQR~GVYTa~DY~d-----Ile~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaER 71 (96)
.+++-..|.+| ||+.||-- ++-.|+..=+-..+.|.|-..+=+ |+||+.+++.
T Consensus 130 ~e~~l~~~~lG-y~p~DY~~~ll~n~v~slv~elr~n~l~~~n~q~r~~-------~~~i~~lS~~ 187 (559)
T PF02106_consen 130 AEVGLFIQALG-YTPADYHPGLLKNMVLSLVSELRENHLNGFNTQRRMS-------PERIHALSRV 187 (559)
T ss_pred hHHHHHHhccC-cccHHHHHHHHHHHHHHHHHHHhhhcccccchhhcCC-------hHHHHHHHHH
Confidence 34556677777 89999975 445566666666777887554433 4666666543
No 86
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=23.88 E-value=1e+02 Score=18.95 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHhhccHHHHHHHH
Q 034389 48 TGEGRRAQEFVCGLAPRIRRLQG 70 (96)
Q Consensus 48 s~eg~kAqdyvc~Lp~RirrlaE 70 (96)
.++-.+|.+|+..+-.-+..+.+
T Consensus 36 lg~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 36 LGKYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999888887643
No 87
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=23.68 E-value=66 Score=24.14 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=36.5
Q ss_pred ccchhhHHHHHHHHhhccc-ccc--ccCCChHHHHHHHHHhhccHHHHHH
Q 034389 22 VYTAHDYADILEFLIGQWG-SEK--LEGLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~~W~-ve~--l~gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
.||-.|+++-+..+++.-. .++ |-|.|=-|-=|..++.+.|+|+++|
T Consensus 66 ~~~~~~~~~~l~~~i~~l~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~l 115 (273)
T PLN02211 66 VTTFDEYNKPLIDFLSSLPENEKVILVGHSAGGLSVTQAIHRFPKKICLA 115 (273)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHhChhheeEE
Confidence 3777888887777777653 334 4599999999999999999988774
No 88
>PF11434 CHIPS: Chemotaxis-inhibiting protein CHIPS; InterPro: IPR020986 Chemotaxis inhibitory protein (also knows as CHIPS) is a Staphylococcus aureus-secreted virulence factor that impairs the response of neutrophils and monocytes to FPR and C5a []. CHIPS has been shown to reduce neutrophil recruitment toward C5a in mouse models (its activity is more potent on human than on mouse cells). As such, its properties may make it a candidate new anti-inflammatory therapeutic compound []. CHIPS also plays an key role in bacterial invasion, by inhibiting FMLP- and C5a-induced calcium moblisation []. By influencing 2 related receptors with very different ligand specificities (C5aR and FPR), the protein has a unique role; nevertheless, neither the manner in which it binds such structurally different molecules nor how its expression is regulated are currently unknown []. The structure of a CHIPS fragment (residues 31-121) has been solved by NMR spectroscopy []. This fragment has the same activity in blocking the C5aR relative to full-length CHIPS, but lacks FPR antagonism []. The protein has a compact fold comprising 2 short alpha-helices packed onto a 4-stranded anti-parallel beta-sheet: strands-2 and -3 are joined by a loop with a well-defined conformation []. The protein shares a high degree of structural similarity with a number of proteins, including the C-terminal domain of staphylococcal superantigen-like proteins (SSLs) 5 and 7, staphyloccocal and streptococcal superantigens TSST-1 and SPE-C, and various domains of the staphylococcal extracellullar adherence protein (EAP) [].; PDB: 2K3U_A 1XEE_A.
Probab=23.24 E-value=57 Score=22.28 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=20.0
Q ss_pred hhccHHHHHHHHHHHHHHhhcCCCcccce
Q 034389 59 CGLAPRIRRLQGLADQRAKKLKPPRVKFS 87 (96)
Q Consensus 59 c~Lp~RirrlaERa~~r~~~~~~~~~~Fs 87 (96)
.+||.-+-+|.||...-.||....+.+|.
T Consensus 2 sglpttlgklderlrnylkkgtknsaqfe 30 (91)
T PF11434_consen 2 SGLPTTLGKLDERLRNYLKKGTKNSAQFE 30 (91)
T ss_dssp -SS--BHHHHHHHHHHHHHCC-S-GCCEE
T ss_pred CCCcchhHHHHHHHHHHHHhcccchhhhe
Confidence 36899999999999988888776677774
No 89
>COG1686 DacC D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]
Probab=23.02 E-value=52 Score=27.41 Aligned_cols=26 Identities=27% Similarity=0.106 Sum_probs=21.2
Q ss_pred ccchhhHHHHHHHHhh-ccccccccCC
Q 034389 22 VYTAHDYADILEFLIG-QWGSEKLEGL 47 (96)
Q Consensus 22 VYTa~DY~dIle~Lv~-~W~ve~l~gL 47 (96)
++||+|.+-|..||++ ..++-++.+.
T Consensus 175 ~tTArDla~l~~~l~~~~P~~~~~~s~ 201 (389)
T COG1686 175 VTTARDLALLARALIRDYPEIYEISST 201 (389)
T ss_pred cccHHHHHHHHHHHHHhCchhhhhcce
Confidence 4599999999999999 7777666544
No 90
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=22.76 E-value=1.1e+02 Score=22.10 Aligned_cols=29 Identities=7% Similarity=0.090 Sum_probs=25.7
Q ss_pred hHHHHHHHHhhccchhhHHHHHHHHhhcc
Q 034389 11 AHFAAVAQQLGVYTAHDYADILEFLIGQW 39 (96)
Q Consensus 11 ~~FS~vAQR~GVYTa~DY~dIle~Lv~~W 39 (96)
+=|..|-++|..++..+|-++|..|+..=
T Consensus 84 ~v~~~a~~kL~~~~~~~y~~~l~~li~~~ 112 (188)
T PRK02292 84 DVRNQVEDEIASLDGDKREELTKSLLDAA 112 (188)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34888999999999999999999999864
No 91
>PF13286 HD_assoc: Phosphohydrolase-associated domain; PDB: 2DQB_D.
Probab=22.65 E-value=69 Score=20.20 Aligned_cols=18 Identities=17% Similarity=0.479 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhhccHHHH
Q 034389 49 GEGRRAQEFVCGLAPRIR 66 (96)
Q Consensus 49 ~eg~kAqdyvc~Lp~Rir 66 (96)
+..+..-|||.++-+++-
T Consensus 69 ~~~r~v~DyIaGMTD~yA 86 (92)
T PF13286_consen 69 SRARVVCDYIAGMTDRYA 86 (92)
T ss_dssp -HHHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHhhcCcHHHH
Confidence 778889999999988864
No 92
>PF04336 DUF479: Protein of unknown function, DUF479; InterPro: IPR007431 This entry contains the Escherichia coli gene yajB, now renamed acpH, which encodes an ACP hydrolase. AcpH converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP []. A mutant E. coli strain having a total deletion of the acpH grows normally, showing that phosphodiesterase activity is not essential for growth, although it is required for turnover of the ACP prosthetic group in vivo. AcpH is found only in Gram-negative organisms suggesting that it plays a role in some aspect of lipid metabolism that is unique to these organisms. The most obvious of which is biosynthesis of lipid A. Because AcpH is a hydrolase, it could possibly be an editing enzyme that intercepts acyl-ACPs that would give an inappropriate lipid A structure if used as acyl donors []. ; GO: 0008770 [acyl-carrier-protein] phosphodiesterase activity, 0006633 fatty acid biosynthetic process
Probab=22.59 E-value=1.1e+02 Score=20.41 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=26.1
Q ss_pred HHhhccccccccCCChHHHHHHHHHhh----ccHHHHHHHHHHH
Q 034389 34 FLIGQWGSEKLEGLTGEGRRAQEFVCG----LAPRIRRLQGLAD 73 (96)
Q Consensus 34 ~Lv~~W~ve~l~gLs~eg~kAqdyvc~----Lp~RirrlaERa~ 73 (96)
+|.+.|.-=+=..|..=.+++..=|.+ ||+|+.++-.++.
T Consensus 4 fLA~~W~~~s~~~L~~f~~~~Y~~L~~~~~~lP~~~~~~~~~m~ 47 (106)
T PF04336_consen 4 FLAKHWSQFSDQPLEDFAQRFYQQLEANQPILPPRFQRMLPYMI 47 (106)
T ss_pred HHHHhHHHHCcCCHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 466666654444566666666554444 8999999887775
No 93
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=22.58 E-value=1.9e+02 Score=17.62 Aligned_cols=57 Identities=16% Similarity=0.040 Sum_probs=33.0
Q ss_pred hhccchhhHHHHHHHHh-hccccccccCCChHHHHHHHHHhhccHHHHHHHHHHHHHHh
Q 034389 20 LGVYTAHDYADILEFLI-GQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAK 77 (96)
Q Consensus 20 ~GVYTa~DY~dIle~Lv-~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~~r~~ 77 (96)
+|+-...++..-+..++ ....+-.... .++-..+=+|+..=|+..++|++++.++.+
T Consensus 21 ~G~~vi~~~~~~~~~~~~~~~~~~~~~~-~~el~~~i~~ll~~~~~~~~ia~~a~~~v~ 78 (92)
T PF13524_consen 21 CGTPVISDDSPGLREIFEDGEHIITYND-PEELAEKIEYLLENPEERRRIAKNARERVL 78 (92)
T ss_pred CCCeEEECChHHHHHHcCCCCeEEEECC-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 46666666554444443 1111222111 234455666777789999999999987654
No 94
>PRK05855 short chain dehydrogenase; Validated
Probab=22.46 E-value=1.4e+02 Score=23.84 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=32.7
Q ss_pred hccchhhHHHHHHHHhhcccccc---ccCCChHHHHHHHHHhh
Q 034389 21 GVYTAHDYADILEFLIGQWGSEK---LEGLTGEGRRAQEFVCG 60 (96)
Q Consensus 21 GVYTa~DY~dIle~Lv~~W~ve~---l~gLs~eg~kAqdyvc~ 60 (96)
+.||..|+++-+..+++...++. |-|.|--|--|..+++.
T Consensus 72 ~~~~~~~~a~dl~~~i~~l~~~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 72 AAYTLARLADDFAAVIDAVSPDRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCcEEEEecChHHHHHHHHHhC
Confidence 36899999999999999988776 56999888777777655
No 95
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=22.40 E-value=75 Score=22.05 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=21.4
Q ss_pred HHHHhhccHH-HHHHHHHHHHHHhhcCCCcccceeeeC
Q 034389 55 QEFVCGLAPR-IRRLQGLADQRAKKLKPPRVKFSWIFN 91 (96)
Q Consensus 55 qdyvc~Lp~R-irrlaERa~~r~~~~~~~~~~FsWI~~ 91 (96)
.+-||.|++. +..|++-++ .|+..+.|-||..
T Consensus 11 ~e~v~~~S~~LideLa~i~~-----~p~e~ftlE~i~s 43 (108)
T PF08921_consen 11 EEQVQELSKELIDELAEICG-----CPRENFTLEWINS 43 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-------GGG-EEEE---
T ss_pred HHHHHHHhHHHHHHHHHHHC-----CCcceEEEEEece
Confidence 4668888888 788888888 7888888888764
No 96
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=22.37 E-value=1.1e+02 Score=26.13 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhhccccccccCCChH---HHHHHHHHhhccHHHHHHHHHHHHHHhhc
Q 034389 26 HDYADILEFLIGQWGSEKLEGLTGE---GRRAQEFVCGLAPRIRRLQGLADQRAKKL 79 (96)
Q Consensus 26 ~DY~dIle~Lv~~W~ve~l~gLs~e---g~kAqdyvc~Lp~RirrlaERa~~r~~~~ 79 (96)
.-|.+.|+|-+.+=+=.+-+-+-.| +.+|.+|+ .|-.|||.|++.-..-.||.
T Consensus 123 ~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l-~l~~~~R~~ek~n~~AIkKS 178 (426)
T KOG2008|consen 123 SAWQEVLNHATQRVMEAEQEKTRAELVHASTAARYL-ALMGRMRQLEKKNKRAIKKS 178 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHhhc
Confidence 4588999998776554443333333 67888886 57889999998765444444
No 97
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=22.35 E-value=82 Score=17.70 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHhhccchhhHHHHHHHHhhccc
Q 034389 9 LFAHFAAVAQQLGVYTAHDYADILEFLIGQWG 40 (96)
Q Consensus 9 lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ 40 (96)
-|.-.+++|+.+|+ +...|-..|.....
T Consensus 16 ~f~S~~eAa~~lg~----~~~~I~~~~~~~~~ 43 (53)
T smart00497 16 EFSSIREAAKYLGI----SHSSISKYLNTGKK 43 (53)
T ss_pred EecCHHHHHHHhCC----CHHHHHHHHhCCCc
Confidence 38999999999999 66677777765443
No 98
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=22.25 E-value=96 Score=18.26 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=20.0
Q ss_pred HHHHHHHHhhccHHHHHHHHHHH
Q 034389 51 GRRAQEFVCGLAPRIRRLQGLAD 73 (96)
Q Consensus 51 g~kAqdyvc~Lp~RirrlaERa~ 73 (96)
=..|.|++-.|-..|+-|+|++-
T Consensus 7 ~kaaKe~IKsLt~QlK~maekl~ 29 (39)
T PF13713_consen 7 CKAAKEVIKSLTAQLKDMAEKLP 29 (39)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCc
Confidence 35688999999999999999874
No 99
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=22.07 E-value=1.7e+02 Score=23.70 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHhhccc------hhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q 034389 8 RLFAHFAAVAQQLGVYT------AHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLAD 73 (96)
Q Consensus 8 ~lF~~FS~vAQR~GVYT------a~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~ 73 (96)
...+.|..+|+.+|+-+ +.+.++-++.|.+.+.+.. .|++-|-...++ ++.+.+|++.+.
T Consensus 311 ~~~~~~~~la~~lg~~~~~~~~~~~~~~~~i~~l~~~lglp~--~L~~~gv~~~~~----~~~~~~~a~~a~ 376 (398)
T cd08178 311 KAKERYAEIARFLGLPGKTDEEKVESLIKAIEELKKKLGIPK--SIKDAGVDEEDF----LAKVDELAELAF 376 (398)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCCC--CHHHcCCCHHHH----HhhHHHHHHHHH
Confidence 34578999999998753 3567888889999988863 444333333322 223445555543
No 100
>PF01139 RtcB: tRNA-splicing ligase RtcB; InterPro: IPR001233 A number of uncharacterised proteins including Escherichia coli rtcB, Mycobacterium tuberculosis MtCY441.01., Caenorhabditis elegans F16A11.2 and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0682 belong to this family.; PDB: 2EPG_B 1UC2_B.
Probab=21.73 E-value=34 Score=28.66 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=34.5
Q ss_pred HhhccchhhHHHHHHHHhhccccc----cccCCChHHHHHHHHHh--hccHHHHH
Q 034389 19 QLGVYTAHDYADILEFLIGQWGSE----KLEGLTGEGRRAQEFVC--GLAPRIRR 67 (96)
Q Consensus 19 R~GVYTa~DY~dIle~Lv~~W~ve----~l~gLs~eg~kAqdyvc--~Lp~Rirr 67 (96)
-+|-..+.+|.+........|.++ .|.+|.-+++.+|+|+. .+..++.+
T Consensus 200 glG~~i~~~~~~~a~~~~~~~~~~~~~~~l~~l~~~s~~~~~Yl~~m~~A~~~A~ 254 (420)
T PF01139_consen 200 GLGHQIAEYYIKKAKEQMKKYGIKLPDKDLAYLPLDSEEGQDYLKAMNAAQNYAF 254 (420)
T ss_dssp CHHHHHHHHHHHHHHCCHHHCT---SSCCG--EETTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccceecCCCHHHHHHHHHHHHHHHHHH
Confidence 367778889999999888888753 35677778889999984 45555554
No 101
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=21.61 E-value=1.9e+02 Score=24.50 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=45.5
Q ss_pred hccchhhHHHHHHHHhhcccccccc---CCChHHHHHHHHHhhccHHHHHHHHH
Q 034389 21 GVYTAHDYADILEFLIGQWGSEKLE---GLTGEGRRAQEFVCGLAPRIRRLQGL 71 (96)
Q Consensus 21 GVYTa~DY~dIle~Lv~~W~ve~l~---gLs~eg~kAqdyvc~Lp~RirrlaER 71 (96)
=++|..|-+..-..|+++-.|.+|. |=|=-|-.|-++...-|+|.+++.=-
T Consensus 125 P~~ti~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~i 178 (368)
T COG2021 125 PVITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPI 178 (368)
T ss_pred CcccHHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhChHHHhhhhee
Confidence 4689999999999999999999987 77888999999999999999997633
No 102
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=21.59 E-value=1.1e+02 Score=23.53 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=33.1
Q ss_pred HhhccchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHH
Q 034389 19 QLGVYTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIR 66 (96)
Q Consensus 19 R~GVYTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rir 66 (96)
|.=--||.|-..||++..++|+..++- |-|=-|-=.--=+-.||+.+|
T Consensus 45 rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~~r 94 (192)
T PF06057_consen 45 RTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRLPAALR 94 (192)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhCCHHHH
Confidence 333457999999999999999999874 777554433333444555544
No 103
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=21.22 E-value=68 Score=27.49 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=42.4
Q ss_pred HhhccchhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHH
Q 034389 19 QLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRR 67 (96)
Q Consensus 19 R~GVYTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~Rirr 67 (96)
-+.-||+.|.++-+|.+=-.|++++.--|=+..-+|++-|-.|=.|+++
T Consensus 75 al~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~ 123 (408)
T COG2081 75 ALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEA 123 (408)
T ss_pred HHHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHH
Confidence 3568999999999999999999999887777778999998888777765
No 104
>PF10244 MRP-L51: Mitochondrial ribosomal subunit; InterPro: IPR019373 MRP-L51 is a family of small proteins from the intact 55 S mitochondrial ribosome []. It has otherwise been referred to as bMRP-64 []. The exact function of this family is not known.
Probab=21.22 E-value=23 Score=24.76 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=9.2
Q ss_pred ccchhhHHHHHH
Q 034389 22 VYTAHDYADILE 33 (96)
Q Consensus 22 VYTa~DY~dIle 33 (96)
.|...||+|||-
T Consensus 16 lFGqnDyIdILG 27 (94)
T PF10244_consen 16 LFGQNDYIDILG 27 (94)
T ss_pred hcCCcccccccC
Confidence 456679999984
No 105
>PHA00099 minor capsid protein
Probab=21.00 E-value=1.7e+02 Score=21.96 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=28.9
Q ss_pred HHHHHhhcc----chhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHH
Q 034389 15 AVAQQLGVY----TAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRR 67 (96)
Q Consensus 15 ~vAQR~GVY----Ta~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~Rirr 67 (96)
-+++|-+-| .+.||.+-|+-.+ +||+-.-.||+.||.
T Consensus 46 h~~rRq~~ygdc~sp~D~qeAl~~V~----------------~~qeaFdsLPA~iR~ 86 (147)
T PHA00099 46 HVERRQPRYGDCMSPMDYQEALNVVI----------------EAQEAFDSLPAKIRE 86 (147)
T ss_pred hhhhhCCccccCCCchhHHHHHHHHH----------------HHHHHHHhhhHHHHH
Confidence 357888888 4679999998877 566677789999885
No 106
>PTZ00458 acyl CoA binding protein; Provisional
Probab=20.85 E-value=72 Score=21.53 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=13.8
Q ss_pred hHHHHHHHHhhccccc
Q 034389 27 DYADILEFLIGQWGSE 42 (96)
Q Consensus 27 DY~dIle~Lv~~W~ve 42 (96)
-|+++++.|+..|+-.
T Consensus 74 ~YI~l~~~l~~~w~~~ 89 (90)
T PTZ00458 74 RYVEIVTELFPNWEKG 89 (90)
T ss_pred HHHHHHHHHhhccccC
Confidence 3999999999999754
No 107
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.75 E-value=69 Score=25.69 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=16.4
Q ss_pred hhccchhhHHHHHHHHhhc
Q 034389 20 LGVYTAHDYADILEFLIGQ 38 (96)
Q Consensus 20 ~GVYTa~DY~dIle~Lv~~ 38 (96)
-|.||..|+.+|+++.-.+
T Consensus 80 ~~~YT~~di~eiv~yA~~r 98 (357)
T cd06563 80 GGFYTQEEIREIVAYAAER 98 (357)
T ss_pred CceECHHHHHHHHHHHHHc
Confidence 3899999999999987655
No 108
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=20.46 E-value=1.6e+02 Score=20.97 Aligned_cols=44 Identities=9% Similarity=0.257 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHhhccccc--c--ccCCChHHHHHHHHHhhccHHHHHH
Q 034389 25 AHDYADILEFLIGQWGSE--K--LEGLTGEGRRAQEFVCGLAPRIRRL 68 (96)
Q Consensus 25 a~DY~dIle~Lv~~W~ve--~--l~gLs~eg~kAqdyvc~Lp~Rirrl 68 (96)
..|..++++++.++-.|+ . |.|.|--|.-|....+.-|+++..+
T Consensus 76 ~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~ 123 (212)
T TIGR01840 76 VESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGG 123 (212)
T ss_pred HHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEE
Confidence 345668888888877665 2 5699999999999999999887764
No 109
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=20.40 E-value=1.7e+02 Score=19.26 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=26.5
Q ss_pred ccCCChHHHHHHHHHhhccHHHHHHHHHHHHHHhhcCCCcccceeeeCc
Q 034389 44 LEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLKPPRVKFSWIFNR 92 (96)
Q Consensus 44 l~gLs~eg~kAqdyvc~Lp~RirrlaERa~~r~~~~~~~~~~FsWI~~r 92 (96)
|..+|++|-+. +.+.|+|...+.+.+++ ....-..|-|.+++
T Consensus 4 l~~~T~~g~~~---~~~~~~R~~a~~~~~e~----~Gg~l~~~y~t~G~ 45 (91)
T PF08734_consen 4 LARYTPEGAKG---IKDSPDRAEAVRALIEA----LGGKLKSFYWTLGE 45 (91)
T ss_pred EEEeCHHHHHH---HhhcHHHHHHHHHHHHH----cCCEEEEEEEecCC
Confidence 34678887665 44459998887766663 22234467777664
Done!