BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034392
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3H4F1|SP1L1_ARATH Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1
Length = 113
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 79/110 (71%), Gaps = 16/110 (14%)
Query: 1 MGRGVSSGGGQSSLGYLFSDGEAQNNAPTQKPAP----------------VAQPVDITKQ 44
MGRGVS GGGQSSLGYLF GEA A PAP AQ V++TKQ
Sbjct: 1 MGRGVSVGGGQSSLGYLFGSGEAPKPAINNAPAPSSETLPISADPSPKHVAAQTVNVTKQ 60
Query: 45 LPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGG 94
+PAGIN +S NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSL YLFGGG
Sbjct: 61 IPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGG 110
>sp|Q9LE54|SP1L2_ARATH Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1
Length = 110
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 78/110 (70%), Gaps = 14/110 (12%)
Query: 1 MGRGVSSGGGQSSLGYLFSDGEAQNNAPTQKP--------------APVAQPVDITKQLP 46
MGRGVS+GGGQSSLGYLF GEA A K A A VD KQ+P
Sbjct: 1 MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60
Query: 47 AGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN 96
AG+NS S NNYMRA+GQNTGNFITDRPSTKVH+APGGGSSL YLFGGGSN
Sbjct: 61 AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGGSN 110
>sp|Q2QQ99|SP1L3_ORYSJ Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica
GN=Os12g0502000 PE=2 SV=1
Length = 101
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 61/83 (73%), Gaps = 7/83 (8%)
Query: 16 YLFSDGEAQNNAPTQKPAPVAQPV-----DITKQLPAGINSTSMNNYMRADGQNTGNFIT 70
YLF GEA +A +KPAPV +P + K++PAGI S+ NNYMRA+GQN GNF+T
Sbjct: 16 YLFGGGEAPKSA--EKPAPVQKPAPSSSAEKLKEIPAGIQSSKANNYMRAEGQNCGNFLT 73
Query: 71 DRPSTKVHAAPGGGSSLGYLFGG 93
DRPSTKV AAPGGGSSL YLF G
Sbjct: 74 DRPSTKVQAAPGGGSSLDYLFSG 96
>sp|Q9SJW3|SPR1_ARATH Protein SPIRAL1 OS=Arabidopsis thaliana GN=SPR1 PE=2 SV=1
Length = 119
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 68/119 (57%), Gaps = 26/119 (21%)
Query: 1 MGRGVSSGGGQSSLGYLF--------------SDGEAQNNAPT-----------QKPAPV 35
MGRG S GGGQSSL YLF NN P
Sbjct: 1 MGRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 60
Query: 36 AQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGG 94
+P ++ KQ+PAGI T +NNY RA+GQNTGNF+TDRPSTKVHAAPGGGSSL YLF GG
Sbjct: 61 VEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTGG 118
>sp|Q7Y1L9|SP1L1_ORYSJ Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica
GN=Os03g0417800 PE=2 SV=1
Length = 116
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/56 (83%), Positives = 49/56 (87%), Gaps = 1/56 (1%)
Query: 39 VDITKQLPAGIN-STSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGG 93
D TKQ+PAGI S S NNY RADGQNTGNF+TDRPSTKVHAAPGGGSSLGYLFGG
Sbjct: 60 ADATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFGG 115
>sp|Q2R0W8|SP1L2_ORYSJ Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica
GN=Os11g0629400 PE=2 SV=1
Length = 115
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/51 (82%), Positives = 45/51 (88%)
Query: 43 KQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGG 93
K++PAGI ST NNY RA GQN GNF+TDRPSTKVHAAPGGGSSLGYLFGG
Sbjct: 64 KEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGG 114
>sp|Q9LF22|SP1L4_ARATH Protein SPIRAL1-like 4 OS=Arabidopsis thaliana GN=SP1L4 PE=2 SV=1
Length = 127
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 70/118 (59%), Gaps = 27/118 (22%)
Query: 3 RGVSSGGGQSSLGYLFSDGEA--QNNAPTQK-------------PAPVAQP--------- 38
RGV+SGGG+SSLGYLF GE+ + N P K +P
Sbjct: 5 RGVNSGGGESSLGYLFGSGESVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTTTTT 64
Query: 39 --VDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGG 94
+ T++ AG+ S NNY R+DGQN GNF+T+RPSTKVHAAPGGGSSLGYLFG G
Sbjct: 65 GDKNKTEENSAGVRG-SPNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFGSG 121
>sp|Q9S7P8|SP1L3_ARATH Protein SPIRAL1-like 3 OS=Arabidopsis thaliana GN=SP1L3 PE=2 SV=1
Length = 122
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 63/110 (57%), Gaps = 20/110 (18%)
Query: 3 RGVSSGGGQSSLGYLFSDGEAQNNAPTQKPAPVA------------QPVDI-------TK 43
RGV++G +SSLGYLF G+ + A +P+ K
Sbjct: 5 RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNK 64
Query: 44 QLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGG 93
+ AG+ S NNY R++GQN GNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 65 KTSAGVRG-SPNNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFGG 113
>sp|Q8LGD1|SP1L5_ARATH Protein SPIRAL1-like 5 OS=Arabidopsis thaliana GN=SP1L5 PE=2 SV=1
Length = 99
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 34/40 (85%)
Query: 53 SMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFG 92
S NNY R GQN+GNF+TDRP+TKV + PGGGSSLGYLFG
Sbjct: 58 SNNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYLFG 97
>sp|Q7XQ83|SP1L4_ORYSJ Protein SPIRAL1-like 4 OS=Oryza sativa subsp. japonica
GN=Os04g0578300 PE=3 SV=1
Length = 127
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 34/110 (30%)
Query: 14 LGYLFS-----------------------------DGEAQNNAPTQKPAPVAQPVDITKQ 44
LGYLF D A + A + A A P+
Sbjct: 17 LGYLFEPEPEDIIPDHSTKSVQGTNKAPKGNIVLGDKMASDEADQEHQA--AAPLKKEDS 74
Query: 45 LPAGINSTSMNNYMRAD--GQNTGNFITDRPSTKVHAAPGGGSSLGYLFG 92
P ++S S +N + G N+G ITDRPST+V APGG SSLG+LFG
Sbjct: 75 NPI-VSSRSASNIYHTNQVGNNSGLLITDRPSTRVRCAPGGPSSLGFLFG 123
>sp|Q74ZB0|MEC3_ASHGO DNA damage checkpoint control protein MEC3 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MEC3 PE=3 SV=2
Length = 386
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 24 QNNAPTQKPAPVAQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKV 77
Q++ P+ PA V + L AG + ++ M + + GN T RPST V
Sbjct: 260 QDDQPSAVPASEPGLVGNVRHLNAGTSMQIEDSEMDIEATDIGNVSTSRPSTSV 313
>sp|B1H228|CC114_RAT Coiled-coil domain-containing protein 114 OS=Rattus norvegicus
GN=Ccdc114 PE=2 SV=1
Length = 694
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 2 GRGVSSGGGQS-SLGYLFSDGEAQNNAPTQKPAPVAQPVDITKQLPAGIN 50
GR +GGG S S+G S G + + T AP ++P T + G N
Sbjct: 645 GRESGTGGGHSQSMGSEMSRGFSSGSGQTSSAAPASRPSSATSKDSRGYN 694
>sp|Q8NHV4|NEDD1_HUMAN Protein NEDD1 OS=Homo sapiens GN=NEDD1 PE=1 SV=1
Length = 660
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 31 KPAPVAQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVH 78
KP P+ + + KQ +NSTSM Y+ + G N I D S +VH
Sbjct: 67 KPVPLLELAEGQKQTCVNLNSTSM--YLVSGGLNNTVNIWDLKSKRVH 112
>sp|A8ZYC8|METK_DESOH S-adenosylmethionine synthase OS=Desulfococcus oleovorans (strain
DSM 6200 / Hxd3) GN=metK PE=3 SV=1
Length = 388
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 2 GRGVSSGGGQSSLGYLFSDGEAQNNAPTQKPAPVAQPVDITKQLPAGINSTSMNNYMRAD 61
G G+ G G +F G A + P PAP++ +TKQL A + + +++R D
Sbjct: 111 GDGLFKEQGAGDQGLMF--GFACDETPELMPAPISYAHKLTKQL-ADVRKNGVLDFLRPD 167
Query: 62 GQN 64
G++
Sbjct: 168 GKS 170
>sp|Q7M8H7|SYV_WOLSU Valine--tRNA ligase OS=Wolinella succinogenes (strain ATCC 29543 /
DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=valS
PE=3 SV=1
Length = 894
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 15 GYLFSDGEAQNNAPTQKPAPVAQPVDITKQLPAG--INST---SMNNYMRADGQNT 65
GY +G AQ P Q A + P ++T L G +N T M Y R DG T
Sbjct: 45 GYFEVEGNAQIQKPNQNFAVMLPPPNVTGSLHIGHALNHTLIDIMTRYKRMDGYKT 100
>sp|B8J8T3|METK_ANAD2 S-adenosylmethionine synthase OS=Anaeromyxobacter dehalogenans
(strain 2CP-1 / ATCC BAA-258) GN=metK PE=3 SV=1
Length = 390
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 1 MGRGVSSGGGQSSLGYLFSDGEAQNNAPTQKPAPVAQPVDITKQLPAGINSTSMNNYMRA 60
+G+GV +GG G +F G A + P PAP+ +TKQL + +++R
Sbjct: 105 IGQGVDTGGAGDQ-GMMF--GYACDETPELMPAPIQYAHAVTKQLAKARRAGL--DFLRP 159
Query: 61 DGQN 64
DG++
Sbjct: 160 DGKS 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,951,718
Number of Sequences: 539616
Number of extensions: 1802035
Number of successful extensions: 3757
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3703
Number of HSP's gapped (non-prelim): 43
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)