Query 034392
Match_columns 96
No_of_seqs 97 out of 99
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 22:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k0l_A Outer membrane protein 25.8 38 0.0013 22.9 2.2 9 14-22 188-196 (216)
2 2wno_A Tumor necrosis factor-i 13.9 38 0.0013 22.4 0.0 14 60-73 133-146 (149)
3 3nb3_A Outer membrane protein 11.4 52 0.0018 23.7 0.1 10 13-22 186-195 (346)
4 1no5_A Hypothetical protein HI 9.8 62 0.0021 20.4 -0.0 9 15-23 30-38 (114)
5 1wot_A Putative minimal nucleo 9.6 57 0.0019 20.2 -0.2 8 15-22 28-35 (98)
6 1smz_A Transportan in bicellar 8.7 66 0.0023 17.5 -0.2 8 13-20 6-13 (27)
7 1ylq_A Putative nucleotidyltra 7.7 74 0.0025 19.6 -0.3 8 15-22 20-27 (96)
8 1r5s_A GAP junction alpha-1 pr 7.3 4.5E+02 0.015 18.6 3.6 15 58-72 53-67 (132)
9 4dxr_B Nesprin-1; beta-sandwic 7.1 1.6E+02 0.0055 16.8 0.9 10 52-61 13-22 (35)
10 1uvq_C Orexin; immunology, MHC 7.0 2E+02 0.007 16.1 1.3 14 72-85 8-23 (33)
No 1
>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae}
Probab=25.79 E-value=38 Score=22.87 Aligned_cols=9 Identities=22% Similarity=0.667 Sum_probs=6.8
Q ss_pred cccccCCCC
Q 034392 14 LGYLFSDGE 22 (96)
Q Consensus 14 LGYLFGsge 22 (96)
|+|-||..+
T Consensus 188 l~Y~Fg~~~ 196 (216)
T 2k0l_A 188 VSYRFGQED 196 (216)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 789998653
No 2
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=13.90 E-value=38 Score=22.37 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=0.0
Q ss_pred cCCCcccceeccCC
Q 034392 60 ADGQNTGNFITDRP 73 (96)
Q Consensus 60 ~~gQN~GNfiTdRp 73 (96)
.-.|||+|||+.|-
T Consensus 133 ~~~~~c~n~~~g~~ 146 (149)
T 2wno_A 133 TTSTGNKNFLAGRF 146 (149)
T ss_dssp --------------
T ss_pred ccccCCCceecccc
Confidence 44689999998763
No 3
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=11.42 E-value=52 Score=23.67 Aligned_cols=10 Identities=40% Similarity=0.890 Sum_probs=5.7
Q ss_pred ccccccCCCC
Q 034392 13 SLGYLFSDGE 22 (96)
Q Consensus 13 SLGYLFGsge 22 (96)
.|+|-||..+
T Consensus 186 Gl~Y~Fg~~~ 195 (346)
T 3nb3_A 186 GVSYRFGQGE 195 (346)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 4789998775
No 4
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=9.77 E-value=62 Score=20.43 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=6.6
Q ss_pred ccccCCCCC
Q 034392 15 GYLFSDGEA 23 (96)
Q Consensus 15 GYLFGsge~ 23 (96)
=|||||-..
T Consensus 30 v~LFGS~Ar 38 (114)
T 1no5_A 30 VWAFGSRVK 38 (114)
T ss_dssp EEEEGGGTT
T ss_pred EEEEeccCC
Confidence 489998544
No 5
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=9.63 E-value=57 Score=20.19 Aligned_cols=8 Identities=13% Similarity=0.057 Sum_probs=5.6
Q ss_pred ccccCCCC
Q 034392 15 GYLFSDGE 22 (96)
Q Consensus 15 GYLFGsge 22 (96)
=|||||-.
T Consensus 28 v~LFGS~a 35 (98)
T 1wot_A 28 VRVFGSVA 35 (98)
T ss_dssp CEECSHHH
T ss_pred EEEEcccc
Confidence 48999843
No 6
>1smz_A Transportan in bicellar solution with [DMPC]/[DHPC]=0.33; transport protein; NMR {Synthetic} SCOP: j.6.1.1
Probab=8.72 E-value=66 Score=17.52 Aligned_cols=8 Identities=50% Similarity=0.928 Sum_probs=6.0
Q ss_pred ccccccCC
Q 034392 13 SLGYLFSD 20 (96)
Q Consensus 13 SLGYLFGs 20 (96)
|-|||.|.
T Consensus 6 SAGYLLGp 13 (27)
T 1smz_A 6 SAGYLLGK 13 (27)
T ss_dssp HHTTTTTT
T ss_pred ccceeecc
Confidence 56888874
No 7
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=7.72 E-value=74 Score=19.56 Aligned_cols=8 Identities=25% Similarity=0.339 Sum_probs=5.2
Q ss_pred ccccCCCC
Q 034392 15 GYLFSDGE 22 (96)
Q Consensus 15 GYLFGsge 22 (96)
=|||||-.
T Consensus 20 v~LFGS~A 27 (96)
T 1ylq_A 20 IYLYGSVV 27 (96)
T ss_dssp EEEESHHH
T ss_pred EEEEEEEE
Confidence 37888743
No 8
>1r5s_A GAP junction alpha-1 protein; CX43CT, membrane protein; NMR {Rattus norvegicus} SCOP: f.50.1.1
Probab=7.27 E-value=4.5e+02 Score=18.59 Aligned_cols=15 Identities=27% Similarity=0.393 Sum_probs=11.6
Q ss_pred cccCCCcccceeccC
Q 034392 58 MRADGQNTGNFITDR 72 (96)
Q Consensus 58 ~r~~gQN~GNfiTdR 72 (96)
..+.-||.-||.|++
T Consensus 53 ~laSEQNWAN~atEq 67 (132)
T 1r5s_A 53 KQASEQNWANYSAEQ 67 (132)
T ss_dssp CCSCSCSSCCTTCCH
T ss_pred cchhhhhhhhhhhhh
Confidence 345579999999954
No 9
>4dxr_B Nesprin-1; beta-sandwich, LINC complex, structural protein; HET: DMU; 2.32A {Homo sapiens} PDB: 4dxs_B*
Probab=7.06 E-value=1.6e+02 Score=16.81 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=7.7
Q ss_pred CCCCcccccC
Q 034392 52 TSMNNYMRAD 61 (96)
Q Consensus 52 ~~~Nny~r~~ 61 (96)
..+|||+|+-
T Consensus 13 ~~aNNFARSF 22 (35)
T 4dxr_B 13 ALSNNFARSF 22 (35)
T ss_dssp TTCCTGGGSS
T ss_pred HhhhhHHHHh
Confidence 5689999863
No 10
>1uvq_C Orexin; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens}
Probab=6.95 E-value=2e+02 Score=16.05 Aligned_cols=14 Identities=71% Similarity=0.937 Sum_probs=8.6
Q ss_pred CCcccee--eCCCCCc
Q 034392 72 RPSTKVH--AAPGGGS 85 (96)
Q Consensus 72 RpstrV~--a~PGG~S 85 (96)
-|||||- +.-||+|
T Consensus 8 ~pSTKVsWAaVtgggs 23 (33)
T 1uvq_C 8 LPSTKVSWAAVGGGGS 23 (33)
T ss_pred CCccccceEEecCCce
Confidence 4899985 3344544
Done!