Query 034392
Match_columns 96
No_of_seqs 97 out of 99
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 22:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034392.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034392hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1skza1 g.3.15.1 (A:7-58) Fact 50.9 2.2 0.00016 24.9 0.7 17 66-82 13-34 (52)
2 d1wiga1 g.39.1.3 (A:1-32) Acti 15.3 22 0.0016 18.8 0.6 10 63-72 9-18 (32)
3 d1no5a_ d.218.1.5 (A:) Hypothe 12.7 20 0.0015 21.0 -0.0 10 15-24 25-34 (100)
4 d2gqba1 a.282.1.1 (A:1-130) Hy 11.9 1.1E+02 0.0082 20.1 3.7 13 14-26 8-20 (130)
5 d1wota_ d.218.1.5 (A:) Unnamed 9.3 28 0.002 20.5 -0.2 7 15-21 28-34 (98)
6 d2h9fa1 d.21.1.4 (A:1-182) Hyp 9.0 26 0.0019 24.2 -0.5 10 61-70 100-109 (182)
7 d2j01p1 c.12.1.1 (P:5-150) Rib 8.7 65 0.0047 20.1 1.4 24 1-24 15-53 (146)
8 d2dloa1 g.39.1.3 (A:8-42) Thyr 8.5 48 0.0035 17.6 0.6 9 64-72 13-21 (35)
9 d1u0la2 c.37.1.8 (A:69-293) Pr 7.5 36 0.0026 23.4 -0.4 18 5-22 102-120 (225)
10 d2gycj1 c.12.1.1 (J:4-143) Rib 7.4 79 0.0058 19.4 1.4 13 1-13 16-28 (140)
No 1
>d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
Probab=50.87 E-value=2.2 Score=24.92 Aligned_cols=17 Identities=47% Similarity=0.687 Sum_probs=13.6
Q ss_pred cceeccCCc-----cceeeCCC
Q 034392 66 GNFITDRPS-----TKVHAAPG 82 (96)
Q Consensus 66 GNfiTdRps-----trV~a~PG 82 (96)
=|+||||-+ .|||+|-|
T Consensus 13 cniitdrctcsgvrcrvhcphg 34 (52)
T d1skza1 13 CNIITDRCTCSGVRCRVHCPHG 34 (52)
T ss_dssp CCTTTCSSCBCCCSSCCCCTTC
T ss_pred ceeeccceeeccceEEEECCCc
Confidence 489999986 58888765
No 2
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.32 E-value=22 Score=18.77 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=8.6
Q ss_pred CcccceeccC
Q 034392 63 QNTGNFITDR 72 (96)
Q Consensus 63 QN~GNfiTdR 72 (96)
..|.+|||.|
T Consensus 9 ~~C~~~ItGk 18 (32)
T d1wiga1 9 DSCEKYITGR 18 (32)
T ss_dssp SSSCCCCSSC
T ss_pred hhhhhhhhhh
Confidence 6899999986
No 3
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}
Probab=12.73 E-value=20 Score=21.05 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=7.3
Q ss_pred ccccCCCCCC
Q 034392 15 GYLFSDGEAQ 24 (96)
Q Consensus 15 GYLFGsge~~ 24 (96)
=|||||-..-
T Consensus 25 v~LFGS~arg 34 (100)
T d1no5a_ 25 VWAFGSRVKG 34 (100)
T ss_dssp EEEEGGGTTT
T ss_pred EEEECCCCCC
Confidence 4999986543
No 4
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=11.92 E-value=1.1e+02 Score=20.06 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=8.7
Q ss_pred cccccCCCCCCCC
Q 034392 14 LGYLFSDGEAQNN 26 (96)
Q Consensus 14 LGYLFGsge~~~~ 26 (96)
++=+||..++.++
T Consensus 8 ~~kIFG~~~~~~~ 20 (130)
T d2gqba1 8 MSAIFGDSAAASP 20 (130)
T ss_dssp HHHHTCCCSSCTT
T ss_pred HHHHcCCccccCC
Confidence 3457998877654
No 5
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=9.29 E-value=28 Score=20.52 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=5.4
Q ss_pred ccccCCC
Q 034392 15 GYLFSDG 21 (96)
Q Consensus 15 GYLFGsg 21 (96)
=|||||-
T Consensus 28 v~lFGS~ 34 (98)
T d1wota_ 28 VRVFGSV 34 (98)
T ss_dssp CEECSHH
T ss_pred EEEECCc
Confidence 4899984
No 6
>d2h9fa1 d.21.1.4 (A:1-182) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.99 E-value=26 Score=24.22 Aligned_cols=10 Identities=40% Similarity=0.355 Sum_probs=8.1
Q ss_pred CCCcccceec
Q 034392 61 DGQNTGNFIT 70 (96)
Q Consensus 61 ~gQN~GNfiT 70 (96)
..+||||++.
T Consensus 100 ~~~NCGNm~s 109 (182)
T d2h9fa1 100 WSGNCGNLST 109 (182)
T ss_dssp CSCCCHHHHH
T ss_pred ccccccchhh
Confidence 3689999875
No 7
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}
Probab=8.73 E-value=65 Score=20.09 Aligned_cols=24 Identities=38% Similarity=0.724 Sum_probs=14.3
Q ss_pred CCCCccCCCCccc----------cc-----cccCCCCCC
Q 034392 1 MGRGVSSGGGQSS----------LG-----YLFSDGEAQ 24 (96)
Q Consensus 1 MgRGvSsGGGQSS----------LG-----YLFGsge~~ 24 (96)
.|||.+||=|.+| =| -.|..++.|
T Consensus 15 ~GRG~gsg~Gkt~GrG~kGqkaRsG~~~~~~gFEGGQ~P 53 (146)
T d2j01p1 15 VGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRST 53 (146)
T ss_dssp CCCCSCSSSSSCTTCSSCCSSSCSSCCCCSSSCCSSSCT
T ss_pred ccCCCCCCCCccCCCCCCCCCcCCCCCcCCchhccCCCC
Confidence 3677777655433 22 258888776
No 8
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.54 E-value=48 Score=17.56 Aligned_cols=9 Identities=33% Similarity=0.350 Sum_probs=7.6
Q ss_pred cccceeccC
Q 034392 64 NTGNFITDR 72 (96)
Q Consensus 64 N~GNfiTdR 72 (96)
-||.+||||
T Consensus 13 ~C~~~I~dr 21 (35)
T d2dloa1 13 TCSQPILDR 21 (35)
T ss_dssp TTCCBCCSC
T ss_pred HhchHHHHH
Confidence 578899997
No 9
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=7.50 E-value=36 Score=23.37 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=13.5
Q ss_pred ccCCCCcccc-ccccCCCC
Q 034392 5 VSSGGGQSSL-GYLFSDGE 22 (96)
Q Consensus 5 vSsGGGQSSL-GYLFGsge 22 (96)
++||-|+||| .+|.+..+
T Consensus 102 G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 102 GLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp CSTTSSHHHHHHHHSTTCC
T ss_pred CCCCCCHHHHHHhhcchhh
Confidence 5789999996 67776543
No 10
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}
Probab=7.38 E-value=79 Score=19.41 Aligned_cols=13 Identities=46% Similarity=0.989 Sum_probs=0.0
Q ss_pred CCCCccCCCCccc
Q 034392 1 MGRGVSSGGGQSS 13 (96)
Q Consensus 1 MgRGvSsGGGQSS 13 (96)
.|||..||-|++|
T Consensus 16 ~gRG~gsg~Gkt~ 28 (140)
T d2gycj1 16 LGRGIGSGLGKTG 28 (140)
T ss_dssp SSSCCCSSSCCSS
T ss_pred ccCCCCCCCCCCC
Done!