Query 034393
Match_columns 96
No_of_seqs 101 out of 103
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 22:26:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m3v_A FLIN4, fusion of the LI 83.5 0.19 6.5E-06 33.1 -0.3 35 53-87 34-81 (122)
2 2ecv_A Tripartite motif-contai 75.8 1.1 3.9E-05 26.3 1.4 35 52-86 20-70 (85)
3 2ecy_A TNF receptor-associated 74.8 1.3 4.3E-05 25.6 1.4 37 52-88 16-63 (66)
4 2egp_A Tripartite motif-contai 74.7 1.1 3.6E-05 26.4 1.1 35 52-86 13-64 (79)
5 2ecg_A Baculoviral IAP repeat- 74.5 1.2 4.1E-05 26.8 1.3 37 52-88 26-69 (75)
6 2a20_A Regulating synaptic mem 72.4 0.92 3.1E-05 28.8 0.4 34 52-87 10-45 (62)
7 1x3h_A Leupaxin; paxillin fami 70.3 2.7 9.2E-05 25.0 2.2 37 53-89 17-55 (80)
8 2ecw_A Tripartite motif-contai 69.8 1.4 4.9E-05 25.8 0.8 35 52-86 20-70 (85)
9 2csz_A Synaptotagmin-like prot 68.2 3.2 0.00011 27.0 2.3 51 35-87 4-62 (76)
10 2cuq_A Four and A half LIM dom 67.3 3.3 0.00011 24.5 2.2 37 53-89 17-55 (80)
11 2egq_A FHL1 protein; LIM domai 66.8 2.9 9.8E-05 24.7 1.8 23 65-87 3-27 (77)
12 2ea5_A Cell growth regulator w 66.7 2.1 7.1E-05 25.7 1.1 37 52-88 16-59 (68)
13 4ic3_A E3 ubiquitin-protein li 66.3 1.4 4.8E-05 26.5 0.3 38 52-89 25-69 (74)
14 1g25_A CDK-activating kinase a 62.4 2 6.8E-05 24.7 0.4 34 53-86 5-54 (65)
15 2ysl_A Tripartite motif-contai 62.0 1.8 6E-05 25.1 0.1 35 52-86 21-68 (73)
16 2cup_A Skeletal muscle LIM-pro 61.1 3.2 0.00011 25.6 1.3 34 53-86 35-77 (101)
17 3gox_A Restriction endonucleas 60.6 3.7 0.00013 31.1 1.7 67 12-87 60-149 (200)
18 1bor_A Transcription factor PM 60.0 6.3 0.00022 22.3 2.3 34 53-86 8-48 (56)
19 2ct2_A Tripartite motif protei 59.4 1.8 6.2E-05 25.8 -0.1 35 52-86 16-67 (88)
20 2jne_A Hypothetical protein YF 58.6 1.9 6.5E-05 29.6 -0.1 37 52-88 33-74 (101)
21 2xqn_T Testin, TESS; metal-bin 57.8 2.1 7E-05 27.6 -0.1 22 65-86 51-74 (126)
22 1t1h_A Gspef-atpub14, armadill 57.3 2 6.8E-05 25.4 -0.2 35 53-87 10-55 (78)
23 1x6a_A LIMK-2, LIM domain kina 57.1 5.4 0.00019 23.7 1.8 10 77-86 17-26 (81)
24 1x63_A Skeletal muscle LIM-pro 56.6 7.8 0.00027 23.0 2.4 38 53-90 17-58 (82)
25 1v6g_A Actin binding LIM prote 56.1 6.8 0.00023 23.3 2.1 11 77-87 43-53 (81)
26 1chc_A Equine herpes virus-1 r 54.6 3.9 0.00013 23.3 0.8 36 53-88 7-53 (68)
27 2xjy_A Rhombotin-2; oncoprotei 54.5 1.6 5.3E-05 28.3 -1.1 35 53-87 31-78 (131)
28 1jm7_A BRCA1, breast cancer ty 54.2 3 0.0001 26.0 0.2 35 53-87 23-70 (112)
29 2dar_A PDZ and LIM domain prot 54.0 11 0.00039 22.9 2.9 36 52-91 26-67 (90)
30 2vje_B MDM4 protein; proto-onc 52.6 2 6.9E-05 25.2 -0.7 37 52-88 8-57 (63)
31 2csy_A Zinc finger protein 183 52.2 2 6.7E-05 25.7 -0.9 34 53-86 17-60 (81)
32 1zbd_B Rabphilin-3A; G protein 51.3 3.1 0.00011 28.8 -0.0 38 48-87 52-92 (134)
33 3l11_A E3 ubiquitin-protein li 51.1 5.2 0.00018 25.4 1.0 35 52-86 16-61 (115)
34 4ayc_A E3 ubiquitin-protein li 49.9 3.3 0.00011 27.5 -0.1 34 53-86 55-98 (138)
35 3ztg_A E3 ubiquitin-protein li 49.0 4.1 0.00014 24.7 0.3 35 52-86 14-61 (92)
36 2dlo_A Thyroid receptor-intera 48.5 12 0.0004 22.2 2.3 43 48-91 13-57 (81)
37 1kbe_A Kinase suppressor of RA 48.2 2.8 9.7E-05 24.6 -0.6 22 52-74 15-36 (49)
38 2ehe_A Four and A half LIM dom 47.4 11 0.00039 22.3 2.1 21 66-86 4-26 (82)
39 2ecm_A Ring finger and CHY zin 46.6 5.7 0.00019 21.6 0.6 35 52-86 6-54 (55)
40 2rgt_A Fusion of LIM/homeobox 46.5 8.3 0.00028 26.2 1.5 22 65-86 53-76 (169)
41 1a7i_A QCRP2 (LIM1); LIM domai 46.1 7 0.00024 23.3 1.0 9 53-61 36-44 (81)
42 1iym_A EL5; ring-H2 finger, ub 45.6 7.1 0.00024 21.3 0.9 21 65-85 29-53 (55)
43 2cu8_A Cysteine-rich protein 2 45.4 12 0.00041 21.9 2.0 39 47-90 6-51 (76)
44 2ep4_A Ring finger protein 24; 45.3 5.3 0.00018 23.2 0.3 42 52-93 16-70 (74)
45 2ckl_B Ubiquitin ligase protei 44.4 6.6 0.00023 26.5 0.8 36 53-88 56-103 (165)
46 3fl2_A E3 ubiquitin-protein li 43.8 5.1 0.00017 25.8 0.1 36 52-87 53-99 (124)
47 3vk6_A E3 ubiquitin-protein li 42.7 5.8 0.0002 27.0 0.2 30 65-94 22-56 (101)
48 2d8t_A Dactylidin, ring finger 42.2 4.9 0.00017 23.4 -0.2 36 52-87 16-61 (71)
49 3f6q_B LIM and senescent cell 41.3 20 0.00068 20.2 2.5 39 52-90 12-54 (72)
50 2ecj_A Tripartite motif-contai 40.9 6.8 0.00023 21.4 0.3 22 52-73 16-43 (58)
51 2jtn_A LIM domain-binding prot 40.0 7.7 0.00026 26.7 0.5 36 53-88 89-132 (182)
52 1e4u_A Transcriptional repress 39.8 9.5 0.00032 23.5 0.9 36 52-87 12-62 (78)
53 2djb_A Polycomb group ring fin 38.4 9.1 0.00031 22.2 0.6 36 52-87 16-62 (72)
54 2k0a_A PRE-mRNA-splicing facto 38.3 9.9 0.00034 26.3 0.9 31 52-82 30-64 (109)
55 3t6p_A Baculoviral IAP repeat- 37.5 13 0.00044 29.1 1.5 37 52-88 296-339 (345)
56 1jm7_B BARD1, BRCA1-associated 37.4 18 0.00063 23.0 2.1 34 53-86 24-66 (117)
57 2yho_A E3 ubiquitin-protein li 37.1 9.4 0.00032 23.3 0.6 37 52-88 19-62 (79)
58 2jrp_A Putative cytoplasmic pr 36.7 5.9 0.0002 25.9 -0.5 29 53-82 20-48 (81)
59 1g47_A Pinch protein; LIM doma 36.3 36 0.0012 19.6 3.1 38 53-90 13-54 (77)
60 1nyp_A Pinch protein; LIM doma 36.1 21 0.00072 20.2 2.0 13 77-89 33-45 (66)
61 2ecn_A Ring finger protein 141 35.1 3.3 0.00011 23.9 -1.7 37 52-88 16-61 (70)
62 2kiz_A E3 ubiquitin-protein li 35.1 9.6 0.00033 21.7 0.3 36 52-87 15-63 (69)
63 2zet_C Melanophilin; complex, 34.9 12 0.00042 26.4 1.0 35 48-84 65-102 (153)
64 2c6a_A Ubiquitin-protein ligas 34.6 14 0.00049 22.0 1.1 20 53-72 15-34 (46)
65 2d8y_A Eplin protein; LIM doma 33.6 40 0.0014 20.4 3.1 13 77-89 44-56 (91)
66 2l0b_A E3 ubiquitin-protein li 33.6 7.1 0.00024 24.0 -0.4 35 52-86 41-88 (91)
67 2ot8_C HnRNP M, heterogeneous 33.5 13 0.00043 20.5 0.6 9 43-51 18-26 (30)
68 1x61_A Thyroid receptor intera 32.1 38 0.0013 19.3 2.7 14 77-90 35-48 (72)
69 1x4l_A Skeletal muscle LIM-pro 32.0 31 0.0011 19.8 2.3 15 77-91 37-51 (72)
70 2d8z_A Four and A half LIM dom 32.0 29 0.001 19.7 2.1 12 77-88 33-44 (70)
71 2cr8_A MDM4 protein; ZF-ranbp 31.7 16 0.00054 22.5 0.9 21 52-72 12-32 (53)
72 1x68_A FHL5 protein; four-and- 31.0 23 0.00078 20.7 1.6 9 78-86 38-46 (76)
73 2ect_A Ring finger protein 126 30.6 19 0.00065 20.9 1.1 37 52-88 16-65 (78)
74 2z5k_B Nuclear RNA export fact 30.3 14 0.00048 19.9 0.5 10 42-51 16-25 (30)
75 1wyh_A SLIM 2, skeletal muscle 29.9 33 0.0011 19.5 2.1 13 77-89 35-47 (72)
76 1x64_A Alpha-actinin-2 associa 29.5 36 0.0012 20.5 2.4 40 52-91 26-67 (89)
77 2vje_A E3 ubiquitin-protein li 29.1 6.5 0.00022 23.0 -1.1 37 52-88 9-58 (64)
78 2cur_A Skeletal muscle LIM-pro 28.7 37 0.0013 19.3 2.2 14 77-90 33-46 (69)
79 1rmd_A RAG1; V(D)J recombinati 28.4 16 0.00055 23.0 0.6 36 52-87 24-70 (116)
80 2yur_A Retinoblastoma-binding 28.2 19 0.00066 21.0 0.9 36 52-87 16-64 (74)
81 3ng2_A RNF4, snurf, ring finge 27.5 14 0.00048 20.9 0.2 36 52-87 11-63 (71)
82 2ysj_A Tripartite motif-contai 27.2 15 0.00052 20.5 0.3 22 52-73 21-48 (63)
83 2kq9_A DNAK suppressor protein 27.0 16 0.00054 24.2 0.4 12 75-86 81-92 (112)
84 2ckl_A Polycomb group ring fin 26.5 11 0.00039 23.5 -0.4 37 52-88 16-63 (108)
85 1e7l_A GP49, recombination end 26.4 19 0.00065 26.0 0.7 14 73-86 18-31 (157)
86 1v9x_A Poly (ADP-ribose) polym 26.2 22 0.00075 24.0 1.0 19 46-64 15-33 (114)
87 1uw0_A DNA ligase III; DNA rep 26.2 18 0.00061 24.3 0.5 19 46-64 10-28 (117)
88 1rut_X Flinc4, fusion protein 26.1 9.8 0.00034 26.4 -0.8 34 53-86 34-80 (188)
89 2lvu_A Zinc finger and BTB dom 32.0 14 0.00049 16.1 0.0 14 77-90 4-17 (26)
90 3odc_A Poly [ADP-ribose] polym 25.7 24 0.00082 23.7 1.1 20 45-64 13-32 (111)
91 2dmj_A Poly (ADP-ribose) polym 25.7 35 0.0012 22.4 1.9 20 45-64 19-38 (106)
92 1zfo_A LAsp-1; LIM domain, zin 25.2 26 0.00089 18.1 1.0 13 76-88 4-16 (31)
93 1klr_A Zinc finger Y-chromosom 25.1 18 0.00063 15.8 0.3 14 77-90 4-17 (30)
94 2lvr_A Zinc finger and BTB dom 30.2 16 0.00054 16.2 0.0 14 77-90 5-18 (30)
95 2m0e_A Zinc finger and BTB dom 24.3 23 0.00079 15.3 0.6 13 77-89 4-16 (29)
96 1x4j_A Ring finger protein 38; 24.1 18 0.00062 21.0 0.2 36 52-87 24-72 (75)
97 2lvt_A Zinc finger and BTB dom 29.8 16 0.00056 16.2 0.0 14 77-90 4-17 (29)
98 3hct_A TNF receptor-associated 23.6 17 0.00057 23.2 -0.0 37 52-88 19-66 (118)
99 2y43_A E3 ubiquitin-protein li 23.6 15 0.00053 22.4 -0.2 36 52-87 23-69 (99)
100 3od8_A Poly [ADP-ribose] polym 22.8 29 0.001 23.6 1.1 20 45-64 32-51 (116)
101 1tjl_A DNAK suppressor protein 22.7 27 0.00093 24.5 0.9 11 76-86 112-122 (151)
102 2kgo_A Uncharacterized protein 22.4 28 0.00097 23.6 0.9 11 76-86 57-67 (108)
103 3j21_g 50S ribosomal protein L 22.3 36 0.0012 20.2 1.3 23 52-74 15-37 (51)
104 2ecl_A Ring-box protein 2; RNF 22.2 39 0.0013 20.2 1.5 22 65-86 50-75 (81)
105 1znf_A 31ST zinc finger from X 22.1 20 0.00067 15.5 0.1 12 77-88 3-14 (27)
106 1paa_A Yeast transcription fac 22.1 24 0.00081 15.6 0.4 14 77-90 4-17 (30)
107 1z6u_A NP95-like ring finger p 21.7 20 0.00069 24.3 0.1 37 52-88 79-126 (150)
108 2lo3_A SAGA-associated factor 21.7 24 0.00081 20.9 0.4 10 77-86 19-28 (44)
109 2m0f_A Zinc finger and BTB dom 21.1 16 0.00053 16.0 -0.4 12 77-88 4-15 (29)
110 2y1n_A E3 ubiquitin-protein li 21.0 29 0.00098 28.0 0.9 37 52-88 333-380 (389)
111 2kvh_A Zinc finger and BTB dom 20.9 17 0.00058 16.0 -0.3 12 77-88 5-16 (27)
112 2cs2_A Poly [ADP-ribose] polym 20.8 33 0.0011 23.7 1.0 22 43-64 19-40 (134)
113 1rji_A BMKX, potassium channel 20.7 46 0.0016 18.2 1.4 17 77-93 12-28 (31)
114 2co8_A NEDD9 interacting prote 20.3 37 0.0013 20.3 1.1 12 76-87 16-27 (82)
115 2ea6_A Ring finger protein 4; 20.2 19 0.00065 20.0 -0.2 35 52-86 16-67 (69)
116 2d9k_A FLN29 gene product; zin 20.2 5.7 0.0002 23.5 -2.7 34 52-86 18-54 (75)
117 2lcq_A Putative toxin VAPC6; P 20.1 55 0.0019 22.1 2.0 25 53-85 134-158 (165)
No 1
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=83.50 E-value=0.19 Score=33.07 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=27.6
Q ss_pred cccchhhhcC---------CCCCcccccccc----cCccccCCccccc
Q 034393 53 KCIICKQQVH---------QDAKYCHTCAYS----KGVCAMCGKQVLD 87 (96)
Q Consensus 53 ~C~~CK~~v~---------q~~~YCq~CAYk----kgiCamCGKki~d 87 (96)
+|..|+..|. .+.-||..|-.+ +|.|+.|++.|.+
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 7888888874 235689999765 4699999999985
No 2
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.80 E-value=1.1 Score=26.28 Aligned_cols=35 Identities=23% Similarity=0.704 Sum_probs=27.6
Q ss_pred ccccchhhhcCC------CCCcccccccc----------cCccccCCcccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAYS----------KGVCAMCGKQVL 86 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAYk----------kgiCamCGKki~ 86 (96)
..|.||...+.. +|.||..|... ...|.+|...+.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 388999876543 38899999865 678999998876
No 3
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.83 E-value=1.3 Score=25.62 Aligned_cols=37 Identities=22% Similarity=0.671 Sum_probs=27.2
Q ss_pred ccccchhhhcCC------CCCccccccc-----ccCccccCCcccccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAY-----SKGVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAY-----kkgiCamCGKki~dt 88 (96)
..|.||...+.. +|.||..|.. ....|.+|...+..-
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 378888775433 4889999975 345799999988643
No 4
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=74.74 E-value=1.1 Score=26.42 Aligned_cols=35 Identities=26% Similarity=0.711 Sum_probs=26.6
Q ss_pred ccccchhhhcCC------CCCcccccccc-----------cCccccCCcccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAYS-----------KGVCAMCGKQVL 86 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAYk-----------kgiCamCGKki~ 86 (96)
..|.||...+.. +|.||..|... ...|.+|...+.
T Consensus 13 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 378888765433 38899999864 668999999875
No 5
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.50 E-value=1.2 Score=26.75 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=29.1
Q ss_pred ccccchhhhcCC----C--CC-cccccccccCccccCCcccccc
Q 034393 52 TKCIICKQQVHQ----D--AK-YCHTCAYSKGVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~q----~--~~-YCq~CAYkkgiCamCGKki~dt 88 (96)
..|.||...... + |. +|..|+-+...|.+|...|.++
T Consensus 26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFK 69 (75)
T ss_dssp HSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCc
Confidence 379999664433 3 45 8999999999999999998774
No 6
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=72.36 E-value=0.92 Score=28.84 Aligned_cols=34 Identities=29% Similarity=0.712 Sum_probs=27.2
Q ss_pred ccccchh-hhcCCC-CCcccccccccCccccCCccccc
Q 034393 52 TKCIICK-QQVHQD-AKYCHTCAYSKGVCAMCGKQVLD 87 (96)
Q Consensus 52 ~~C~~CK-~~v~q~-~~YCq~CAYkkgiCamCGKki~d 87 (96)
..|.||. ++...+ +|-|..|- .-.||.||-.+.-
T Consensus 10 ~~C~iC~KTKFADG~Gh~C~yCk--~r~CaRCGg~v~l 45 (62)
T 2a20_A 10 PTCGICHKTKFADGCGHNCSYCQ--TKFCARCGGRVSL 45 (62)
T ss_dssp CCCSSSSCSCCCSSCCEEBTTTC--CEECTTSEEEEES
T ss_pred chhhhhccceeccCCCccccccC--CeeecccCCEeee
Confidence 5899995 577777 99999984 4599999988764
No 7
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.30 E-value=2.7 Score=24.97 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=16.8
Q ss_pred cccchhhhcCCCCCccccccccc--CccccCCccccccc
Q 034393 53 KCIICKQQVHQDAKYCHTCAYSK--GVCAMCGKQVLDTK 89 (96)
Q Consensus 53 ~C~~CK~~v~q~~~YCq~CAYkk--giCamCGKki~dt~ 89 (96)
.|..|...|.....--..-.|.. -.|+.|++.|.+..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~ 55 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGS 55 (80)
T ss_dssp BCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSC
T ss_pred ccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCc
Confidence 66666666654311111111111 24666666665543
No 8
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=69.77 E-value=1.4 Score=25.83 Aligned_cols=35 Identities=26% Similarity=0.750 Sum_probs=27.3
Q ss_pred ccccchhhhcCC------CCCcccccccc----------cCccccCCcccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAYS----------KGVCAMCGKQVL 86 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAYk----------kgiCamCGKki~ 86 (96)
..|.||...+.. +|.||..|... ...|++|...+.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 389999876543 38899999864 668999998875
No 9
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.15 E-value=3.2 Score=26.99 Aligned_cols=51 Identities=24% Similarity=0.540 Sum_probs=36.1
Q ss_pred ccccccccc-----cCCCCCCCccccchhhhcCC---CCCcccccccccCccccCCccccc
Q 034393 35 NENKLLSKK-----KRWTPYGNTKCIICKQQVHQ---DAKYCHTCAYSKGVCAMCGKQVLD 87 (96)
Q Consensus 35 ~eNKlLs~k-----~r~~py~~~~C~~CK~~v~q---~~~YCq~CAYkkgiCamCGKki~d 87 (96)
+.|-||.-+ +.-..|+...|..|.+.+-- -+..|+.| ++.+|.-|+.-..+
T Consensus 4 ~~~eL~elrrkgak~~s~~~~~r~CarC~~~LG~l~~~g~~C~~C--k~rVC~~Crv~~~~ 62 (76)
T 2csz_A 4 GSSGLLEIKRKGAKRGSQHYSDRTCARCQESLGRLSPKTNTCRGC--NHLVCRDCRIQESN 62 (76)
T ss_dssp CCCCCCCCCCCCSCSCCTTCCCCBCSSSCCBCSSSCTTTSEETTT--TEECCTTSEEECST
T ss_pred hHHHHHHHHHccccCcCcCCCccchhhhCccccccccCCCcCccc--ChhhcccccccCCC
Confidence 346666552 22236887899999998854 28899999 45699999876654
No 10
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.33 E-value=3.3 Score=24.54 Aligned_cols=37 Identities=16% Similarity=0.452 Sum_probs=18.3
Q ss_pred cccchhhhcCCCCCccccccccc--CccccCCccccccc
Q 034393 53 KCIICKQQVHQDAKYCHTCAYSK--GVCAMCGKQVLDTK 89 (96)
Q Consensus 53 ~C~~CK~~v~q~~~YCq~CAYkk--giCamCGKki~dt~ 89 (96)
.|..|...|.....--..-.|.. -.|+.|++.|.+..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~ 55 (80)
T 2cuq_A 17 RCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQ 55 (80)
T ss_dssp CCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCC
T ss_pred cCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCe
Confidence 77777777754411111111111 25677777775443
No 11
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=66.80 E-value=2.9 Score=24.67 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=16.5
Q ss_pred CCccccccccc--CccccCCccccc
Q 034393 65 AKYCHTCAYSK--GVCAMCGKQVLD 87 (96)
Q Consensus 65 ~~YCq~CAYkk--giCamCGKki~d 87 (96)
.-||..|-++. .+|+.|++.|.+
T Consensus 3 ~~yC~~cy~~~~~~~C~~C~~~I~~ 27 (77)
T 2egq_A 3 SGSSGDCYKNFVAKKCAGCKNPITG 27 (77)
T ss_dssp SSCCTTCCCSCCCCCCSSSCCCCCC
T ss_pred CeEchhHhchhhCccCcccCCcccC
Confidence 45788876553 578888888875
No 12
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.70 E-value=2.1 Score=25.74 Aligned_cols=37 Identities=22% Similarity=0.653 Sum_probs=29.4
Q ss_pred ccccchhhhcCC----C--CC-cccccccccCccccCCcccccc
Q 034393 52 TKCIICKQQVHQ----D--AK-YCHTCAYSKGVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~q----~--~~-YCq~CAYkkgiCamCGKki~dt 88 (96)
..|.||...... + |. +|..|+-....|.+|-..|.++
T Consensus 16 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 16 KDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQES 59 (68)
T ss_dssp SCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCE
T ss_pred CCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhce
Confidence 489999765433 3 44 7999999999999999998764
No 13
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=66.34 E-value=1.4 Score=26.52 Aligned_cols=38 Identities=24% Similarity=0.492 Sum_probs=30.4
Q ss_pred ccccchhhhcCC----C--CC-cccccccccCccccCCccccccc
Q 034393 52 TKCIICKQQVHQ----D--AK-YCHTCAYSKGVCAMCGKQVLDTK 89 (96)
Q Consensus 52 ~~C~~CK~~v~q----~--~~-YCq~CAYkkgiCamCGKki~dt~ 89 (96)
..|.||...... + |. +|..|+..-..|.+|-..|.++-
T Consensus 25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQ 69 (74)
T ss_dssp TBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEE
T ss_pred CCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcE
Confidence 489999876543 3 55 99999999999999999987653
No 14
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.40 E-value=2 Score=24.67 Aligned_cols=34 Identities=26% Similarity=0.642 Sum_probs=24.3
Q ss_pred cccchhhh-c----------CCCCCcccccccc-----cCccccCCcccc
Q 034393 53 KCIICKQQ-V----------HQDAKYCHTCAYS-----KGVCAMCGKQVL 86 (96)
Q Consensus 53 ~C~~CK~~-v----------~q~~~YCq~CAYk-----kgiCamCGKki~ 86 (96)
.|.||... . .=+|.||..|.-+ ...|.+|++.+.
T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred cCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 68888871 1 1248899999643 357999999875
No 15
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.98 E-value=1.8 Score=25.12 Aligned_cols=35 Identities=23% Similarity=0.620 Sum_probs=26.0
Q ss_pred ccccchhhhcCC------CCCccccccccc-------CccccCCcccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAYSK-------GVCAMCGKQVL 86 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAYkk-------giCamCGKki~ 86 (96)
..|.||...+.. +|.||..|...- ..|.+|...+.
T Consensus 21 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 489999875443 378999997532 37999998875
No 16
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=61.14 E-value=3.2 Score=25.63 Aligned_cols=34 Identities=21% Similarity=0.643 Sum_probs=26.1
Q ss_pred cccchhhhcCC-------CCCccccccccc--CccccCCcccc
Q 034393 53 KCIICKQQVHQ-------DAKYCHTCAYSK--GVCAMCGKQVL 86 (96)
Q Consensus 53 ~C~~CK~~v~q-------~~~YCq~CAYkk--giCamCGKki~ 86 (96)
.|..|...+.. +.-||..|..+. ..|+.|++.|.
T Consensus 35 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 35 RCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred cccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 77888777632 356899987654 59999999998
No 17
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=60.56 E-value=3.7 Score=31.08 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=39.2
Q ss_pred CcccCCccCCCCCccccCCCcee----cccccccc--ccCCCC-----CCCccccchhhhcCCCCCccccc-------cc
Q 034393 12 KVIVPDKWKEGASNTTEAGGRKV----NENKLLSK--KKRWTP-----YGNTKCIICKQQVHQDAKYCHTC-------AY 73 (96)
Q Consensus 12 klatPd~~k~g~~~~~~~g~r~i----~eNKlLs~--k~r~~p-----y~~~~C~~CK~~v~q~~~YCq~C-------AY 73 (96)
.|-+-|.||.|.+ .+.++ ++=|-++. +++-+| |.+ .|+.|...+ ..|=-+- +-
T Consensus 60 ~~~~~~~~~~~~~-----~G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s-~CkeC~~~l---r~YGIT~eey~~L~e~ 130 (200)
T 3gox_A 60 ELEAIDIYRTGKG-----YDKKICNICHILKNTDGFEINQTDAKGRKTTRP-SCRECRKNI---DGVKLSSTEKKKMDEI 130 (200)
T ss_dssp GEEECCGGGSSTT-----SSEEECTTTCBEEEGGGSCEEEECTTSCEEECS-SCHHHHHHH---HCSCCCHHHHHHHHTT
T ss_pred hcceeeeeecccc-----CCCeECCCCCCCcchhhhcccccCCCCCcccCc-cChhhhhcc---CCcCCCHHHHHHHHHH
Confidence 4778899998643 23443 55566665 444332 334 888887754 1111111 12
Q ss_pred cc-----CccccCCccccc
Q 034393 74 SK-----GVCAMCGKQVLD 87 (96)
Q Consensus 74 kk-----giCamCGKki~d 87 (96)
+. |.|++||+....
T Consensus 131 Qg~~~~~G~C~ICg~~~~~ 149 (200)
T 3gox_A 131 APPKGSVFTCPICEKRSIV 149 (200)
T ss_dssp CCCTTCEEECTTTCCEEEB
T ss_pred cccCCCCCcCcCCCCCCCc
Confidence 34 799999998773
No 18
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.98 E-value=6.3 Score=22.27 Aligned_cols=34 Identities=18% Similarity=0.497 Sum_probs=24.7
Q ss_pred cccchhhhcCC------CCCcccccccc-cCccccCCcccc
Q 034393 53 KCIICKQQVHQ------DAKYCHTCAYS-KGVCAMCGKQVL 86 (96)
Q Consensus 53 ~C~~CK~~v~q------~~~YCq~CAYk-kgiCamCGKki~ 86 (96)
.|.||...... +|.||..|... ...|.+|...+.
T Consensus 8 ~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 8 RCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp SCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred CceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEee
Confidence 67777764433 37899999865 347999998764
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.37 E-value=1.8 Score=25.81 Aligned_cols=35 Identities=23% Similarity=0.599 Sum_probs=26.1
Q ss_pred ccccchhhhcCC----------CCCcccccccc-------cCccccCCcccc
Q 034393 52 TKCIICKQQVHQ----------DAKYCHTCAYS-------KGVCAMCGKQVL 86 (96)
Q Consensus 52 ~~C~~CK~~v~q----------~~~YCq~CAYk-------kgiCamCGKki~ 86 (96)
..|.||...+.. +|.||..|..+ ...|.+|...+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 378888876544 47899999753 268999998764
No 20
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=58.60 E-value=1.9 Score=29.63 Aligned_cols=37 Identities=24% Similarity=0.637 Sum_probs=28.4
Q ss_pred ccccchhhhcCCC-CCc-ccccc---cccCccccCCcccccc
Q 034393 52 TKCIICKQQVHQD-AKY-CHTCA---YSKGVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~q~-~~Y-Cq~CA---YkkgiCamCGKki~dt 88 (96)
..|.+|.+.+.+. ..| |..|. -+.+.|+-||.++--.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEE
T ss_pred ccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHH
Confidence 3999999998654 555 88886 3567999999987543
No 21
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=57.83 E-value=2.1 Score=27.65 Aligned_cols=22 Identities=23% Similarity=0.541 Sum_probs=10.8
Q ss_pred CCcccccccc--cCccccCCcccc
Q 034393 65 AKYCHTCAYS--KGVCAMCGKQVL 86 (96)
Q Consensus 65 ~~YCq~CAYk--kgiCamCGKki~ 86 (96)
.-||..|-.+ ...|+.||+.|.
T Consensus 51 ~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 51 KPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp EEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred EEechHHhCcCcCccCcccCCcCC
Confidence 3455555433 235555555555
No 22
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=57.34 E-value=2 Score=25.38 Aligned_cols=35 Identities=14% Similarity=0.361 Sum_probs=25.4
Q ss_pred cccchhhhcCC------CCCcccccccc-----cCccccCCccccc
Q 034393 53 KCIICKQQVHQ------DAKYCHTCAYS-----KGVCAMCGKQVLD 87 (96)
Q Consensus 53 ~C~~CK~~v~q------~~~YCq~CAYk-----kgiCamCGKki~d 87 (96)
.|.||..-+.. +|.||..|-.. ...|.+|+..+..
T Consensus 10 ~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 10 RCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 78888765433 47899999632 5689999998753
No 23
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.12 E-value=5.4 Score=23.71 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=4.9
Q ss_pred ccccCCcccc
Q 034393 77 VCAMCGKQVL 86 (96)
Q Consensus 77 iCamCGKki~ 86 (96)
+|+.|++.|.
T Consensus 17 ~C~~C~~~I~ 26 (81)
T 1x6a_A 17 FCHGCSLLMT 26 (81)
T ss_dssp BCTTTCCBCC
T ss_pred cCccCCCCcC
Confidence 4555555444
No 24
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.59 E-value=7.8 Score=22.97 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=20.3
Q ss_pred cccchhhhcCCCCCcc--ccccccc--CccccCCcccccccc
Q 034393 53 KCIICKQQVHQDAKYC--HTCAYSK--GVCAMCGKQVLDTKF 90 (96)
Q Consensus 53 ~C~~CK~~v~q~~~YC--q~CAYkk--giCamCGKki~dt~~ 90 (96)
.|..|.+.|.....+= ..=.|.. -.|+.|++.|.+...
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~ 58 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSF 58 (82)
T ss_dssp BCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCE
T ss_pred cCccCCcccccCceEEEECccccccccCchhhCCCccCCCcc
Confidence 7888888777543211 0111111 257778777766543
No 25
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.09 E-value=6.8 Score=23.33 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=5.6
Q ss_pred ccccCCccccc
Q 034393 77 VCAMCGKQVLD 87 (96)
Q Consensus 77 iCamCGKki~d 87 (96)
.|+.|++.|.+
T Consensus 43 ~C~~C~~~L~~ 53 (81)
T 1v6g_A 43 VCAVCRLPFPP 53 (81)
T ss_dssp SCSSSCCCCCS
T ss_pred ccccCCCCCCC
Confidence 35555555543
No 26
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=54.59 E-value=3.9 Score=23.33 Aligned_cols=36 Identities=22% Similarity=0.625 Sum_probs=26.2
Q ss_pred cccchhhhcCC-------CCCcccccccc----cCccccCCcccccc
Q 034393 53 KCIICKQQVHQ-------DAKYCHTCAYS----KGVCAMCGKQVLDT 88 (96)
Q Consensus 53 ~C~~CK~~v~q-------~~~YCq~CAYk----kgiCamCGKki~dt 88 (96)
.|.||...+.. +|.||..|..+ ...|.+|...+...
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 67777765533 36789999753 57899999888654
No 27
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=54.48 E-value=1.6 Score=28.34 Aligned_cols=35 Identities=26% Similarity=0.637 Sum_probs=20.9
Q ss_pred cccchhhhcCC---------CCCccccccccc----CccccCCccccc
Q 034393 53 KCIICKQQVHQ---------DAKYCHTCAYSK----GVCAMCGKQVLD 87 (96)
Q Consensus 53 ~C~~CK~~v~q---------~~~YCq~CAYkk----giCamCGKki~d 87 (96)
.|..|...|.. +.-||..|-.+. ++|+.|++.|..
T Consensus 31 ~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 31 SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp BCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred ccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 66666666531 245777775542 267777777753
No 28
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.20 E-value=3 Score=25.99 Aligned_cols=35 Identities=23% Similarity=0.820 Sum_probs=25.4
Q ss_pred cccchhhhcCC------CCCcccccccc---c----CccccCCccccc
Q 034393 53 KCIICKQQVHQ------DAKYCHTCAYS---K----GVCAMCGKQVLD 87 (96)
Q Consensus 53 ~C~~CK~~v~q------~~~YCq~CAYk---k----giCamCGKki~d 87 (96)
.|.||...+.. +|.||..|... . ..|++|...+..
T Consensus 23 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp SCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 78888765543 47899999742 1 279999998763
No 29
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.95 E-value=11 Score=22.90 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=22.5
Q ss_pred ccccchhhhcCCC------CCcccccccccCccccCCccccccccc
Q 034393 52 TKCIICKQQVHQD------AKYCHTCAYSKGVCAMCGKQVLDTKFY 91 (96)
Q Consensus 52 ~~C~~CK~~v~q~------~~YCq~CAYkkgiCamCGKki~dt~~y 91 (96)
..|..|...|... ..|=..| -.|+.|++.|.+...+
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~C----F~C~~C~~~L~~~~f~ 67 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEE----FNCAHCKNTMAYIGFV 67 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTT----CBCSSSCCBCSSSCBE
T ss_pred CCCccCCCEecceEEEECCccccccC----CccCCCCCCCCCCEeE
Confidence 4899999877422 1122222 2678899998876544
No 30
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=52.61 E-value=2 Score=25.21 Aligned_cols=37 Identities=24% Similarity=0.682 Sum_probs=27.0
Q ss_pred ccccchhhhc------CCC-CC--cccccccccC----ccccCCcccccc
Q 034393 52 TKCIICKQQV------HQD-AK--YCHTCAYSKG----VCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v------~q~-~~--YCq~CAYkkg----iCamCGKki~dt 88 (96)
..|.||-... +.+ +| +|..|+-+-- .|++|-.+|.++
T Consensus 8 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 8 KPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp SBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred CCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 4899997632 235 55 6999986544 899999998764
No 31
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.17 E-value=2 Score=25.75 Aligned_cols=34 Identities=26% Similarity=0.824 Sum_probs=25.9
Q ss_pred cccchhhhcCC------CCCcccccccc----cCccccCCcccc
Q 034393 53 KCIICKQQVHQ------DAKYCHTCAYS----KGVCAMCGKQVL 86 (96)
Q Consensus 53 ~C~~CK~~v~q------~~~YCq~CAYk----kgiCamCGKki~ 86 (96)
.|.||...+.. +|.||..|... ...|.+|...+.
T Consensus 17 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 17 RCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp BCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 78888775543 47899999743 457999999875
No 32
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=51.27 E-value=3.1 Score=28.82 Aligned_cols=38 Identities=32% Similarity=0.822 Sum_probs=29.1
Q ss_pred CCCCccccchhhhcC---CCCCcccccccccCccccCCccccc
Q 034393 48 PYGNTKCIICKQQVH---QDAKYCHTCAYSKGVCAMCGKQVLD 87 (96)
Q Consensus 48 py~~~~C~~CK~~v~---q~~~YCq~CAYkkgiCamCGKki~d 87 (96)
.++...|.+|-+..- ..++-|..|- .-+|+-||..+.+
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g~~C~~C~--~~VC~~C~~~~~~ 92 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSASVVCEDCK--KNVCTKCGVETSN 92 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCEEECTTTC--CEEETTSEEECCC
T ss_pred cCCCccccccCCCcccccCCCCCCCCCC--cccccccCCccCC
Confidence 355569999999773 2388999995 4599999998754
No 33
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=51.09 E-value=5.2 Score=25.36 Aligned_cols=35 Identities=26% Similarity=0.685 Sum_probs=25.6
Q ss_pred ccccchhhhcCC------CCCcccccccc-----cCccccCCcccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAYS-----KGVCAMCGKQVL 86 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAYk-----kgiCamCGKki~ 86 (96)
-.|.||...+.. +|.||..|..+ ...|.+|...+.
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 378888765433 37799999743 448999999875
No 34
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=49.87 E-value=3.3 Score=27.47 Aligned_cols=34 Identities=29% Similarity=0.799 Sum_probs=25.8
Q ss_pred cccchhhhcCC------CCCccccccc----ccCccccCCcccc
Q 034393 53 KCIICKQQVHQ------DAKYCHTCAY----SKGVCAMCGKQVL 86 (96)
Q Consensus 53 ~C~~CK~~v~q------~~~YCq~CAY----kkgiCamCGKki~ 86 (96)
.|.||...+.. +|.||..|.. ....|++|.+.|.
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 68888765433 3889999975 3578999998875
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=49.03 E-value=4.1 Score=24.67 Aligned_cols=35 Identities=26% Similarity=0.774 Sum_probs=25.3
Q ss_pred ccccchhhhcCC-------CCCccccccccc------CccccCCcccc
Q 034393 52 TKCIICKQQVHQ-------DAKYCHTCAYSK------GVCAMCGKQVL 86 (96)
Q Consensus 52 ~~C~~CK~~v~q-------~~~YCq~CAYkk------giCamCGKki~ 86 (96)
-.|.||...+.. +|.||..|...- ..|++|...+.
T Consensus 14 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 378888765432 577999997422 48999999874
No 36
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.47 E-value=12 Score=22.23 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=22.9
Q ss_pred CCCCccccchhhhcCCCCCccccccccc--CccccCCccccccccc
Q 034393 48 PYGNTKCIICKQQVHQDAKYCHTCAYSK--GVCAMCGKQVLDTKFY 91 (96)
Q Consensus 48 py~~~~C~~CK~~v~q~~~YCq~CAYkk--giCamCGKki~dt~~y 91 (96)
.+.. .|..|.+.|.....-=..-.|.. -.|+.|++.|.+...+
T Consensus 13 ~~~~-~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~ 57 (81)
T 2dlo_A 13 ATLE-KCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFT 57 (81)
T ss_dssp SSCC-BCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEE
T ss_pred cCCC-ccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeE
Confidence 3444 88888888874211000111111 2678888887765443
No 37
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=48.22 E-value=2.8 Score=24.61 Aligned_cols=22 Identities=18% Similarity=0.617 Sum_probs=17.9
Q ss_pred ccccchhhhcCCCCCcccccccc
Q 034393 52 TKCIICKQQVHQDAKYCHTCAYS 74 (96)
Q Consensus 52 ~~C~~CK~~v~q~~~YCq~CAYk 74 (96)
..|..|...|.|+ -.|..|.|.
T Consensus 15 t~C~~C~k~i~~G-~kC~~Ck~~ 36 (49)
T 1kbe_A 15 QVCNVCQKSMIFG-VKCKHCRLK 36 (49)
T ss_dssp CCCSSSCCSSCCE-EEETTTTEE
T ss_pred cCccccCceeECc-CCCCCCCCc
Confidence 5899999999876 678888774
No 38
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.36 E-value=11 Score=22.30 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=9.4
Q ss_pred Cccccccccc--CccccCCcccc
Q 034393 66 KYCHTCAYSK--GVCAMCGKQVL 86 (96)
Q Consensus 66 ~YCq~CAYkk--giCamCGKki~ 86 (96)
-||..|-++. .+|+-|++.|.
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~ 26 (82)
T 2ehe_A 4 GSSGPCYDNTFANTCAECQQLIG 26 (82)
T ss_dssp CCCCCCCCCCCSCBCTTTCCBCC
T ss_pred eechhHhCcccCCcCccCCCccc
Confidence 3444443321 24555555554
No 39
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=46.57 E-value=5.7 Score=21.59 Aligned_cols=35 Identities=23% Similarity=0.527 Sum_probs=23.4
Q ss_pred ccccchhhhcCC----------CCCcccccccc----cCccccCCcccc
Q 034393 52 TKCIICKQQVHQ----------DAKYCHTCAYS----KGVCAMCGKQVL 86 (96)
Q Consensus 52 ~~C~~CK~~v~q----------~~~YCq~CAYk----kgiCamCGKki~ 86 (96)
..|.||...+.. +|.||..|..+ ...|.+|...|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 367777765432 36788888643 367999987663
No 40
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=46.49 E-value=8.3 Score=26.23 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=10.8
Q ss_pred CCccccccccc--CccccCCcccc
Q 034393 65 AKYCHTCAYSK--GVCAMCGKQVL 86 (96)
Q Consensus 65 ~~YCq~CAYkk--giCamCGKki~ 86 (96)
.-||..|-++. ..|+.|++.|.
T Consensus 53 ~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 53 SVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp CEECHHHHHHHHSCBCTTTCCBCC
T ss_pred eeeecccccccccccccccccccC
Confidence 44555554332 35555555554
No 41
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=46.09 E-value=7 Score=23.26 Aligned_cols=9 Identities=22% Similarity=1.228 Sum_probs=4.7
Q ss_pred cccchhhhc
Q 034393 53 KCIICKQQV 61 (96)
Q Consensus 53 ~C~~CK~~v 61 (96)
+|..|...+
T Consensus 36 ~C~~C~~~L 44 (81)
T 1a7i_A 36 LCMVCRKNL 44 (81)
T ss_dssp ECSSSCCEE
T ss_pred ccCCCCCCC
Confidence 455555544
No 42
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=45.56 E-value=7.1 Score=21.25 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=15.0
Q ss_pred CCccccccc----ccCccccCCccc
Q 034393 65 AKYCHTCAY----SKGVCAMCGKQV 85 (96)
Q Consensus 65 ~~YCq~CAY----kkgiCamCGKki 85 (96)
|.||..|.. ....|.+|...+
T Consensus 29 H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 29 HGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CcccHHHHHHHHHcCCcCcCCCCEe
Confidence 567777764 366799997765
No 43
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.41 E-value=12 Score=21.94 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=20.1
Q ss_pred CCCCCccccchhhhcCCC-------CCcccccccccCccccCCcccccccc
Q 034393 47 TPYGNTKCIICKQQVHQD-------AKYCHTCAYSKGVCAMCGKQVLDTKF 90 (96)
Q Consensus 47 ~py~~~~C~~CK~~v~q~-------~~YCq~CAYkkgiCamCGKki~dt~~ 90 (96)
..+.. .|..|...|... ..|=..| -.|+.|++.|.+...
T Consensus 6 ~~~~~-~C~~C~~~I~~~~~v~a~~~~~H~~C----F~C~~C~~~L~~~~~ 51 (76)
T 2cu8_A 6 SGMAS-KCPKCDKTVYFAEKVSSLGKDWHKFC----LKCERCSKTLTPGGH 51 (76)
T ss_dssp CCCCC-BCTTTCCBCCTTTEEEETTEEEETTT----CBCSSSCCBCCTTSC
T ss_pred CCCCC-CCcCCCCEeECCeEEEECCeEeeCCC----CCCCCCCCccCCCce
Confidence 33444 777777776532 1111222 246777777765443
No 44
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.30 E-value=5.3 Score=23.21 Aligned_cols=42 Identities=19% Similarity=0.561 Sum_probs=30.0
Q ss_pred ccccchhhhcCC---------CCCcccccccc----cCccccCCccccccccccc
Q 034393 52 TKCIICKQQVHQ---------DAKYCHTCAYS----KGVCAMCGKQVLDTKFYKQ 93 (96)
Q Consensus 52 ~~C~~CK~~v~q---------~~~YCq~CAYk----kgiCamCGKki~dt~~y~q 93 (96)
..|.||...+.. +|.||..|..+ ...|.+|...|.++.....
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSG 70 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCCC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccccCC
Confidence 378888776532 35678888743 5689999999988765543
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=44.39 E-value=6.6 Score=26.47 Aligned_cols=36 Identities=22% Similarity=0.718 Sum_probs=26.9
Q ss_pred cccchhhhcCC-------CCCcccccccc-----cCccccCCcccccc
Q 034393 53 KCIICKQQVHQ-------DAKYCHTCAYS-----KGVCAMCGKQVLDT 88 (96)
Q Consensus 53 ~C~~CK~~v~q-------~~~YCq~CAYk-----kgiCamCGKki~dt 88 (96)
.|.||...+.. +|.||..|..+ ...|.+|...+...
T Consensus 56 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 56 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 89999764432 48899999743 56799999998543
No 46
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=43.81 E-value=5.1 Score=25.80 Aligned_cols=36 Identities=22% Similarity=0.563 Sum_probs=26.7
Q ss_pred ccccchhhhcCC------CCCccccccc-----ccCccccCCccccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAY-----SKGVCAMCGKQVLD 87 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAY-----kkgiCamCGKki~d 87 (96)
-.|.||...+.. +|.||..|.. ....|++|...+..
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 379999775432 3779999974 33489999998864
No 47
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=42.71 E-value=5.8 Score=27.04 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=24.3
Q ss_pred CCcccccccc-----cCccccCCcccccccccccc
Q 034393 65 AKYCHTCAYS-----KGVCAMCGKQVLDTKFYKQS 94 (96)
Q Consensus 65 ~~YCq~CAYk-----kgiCamCGKki~dt~~y~qS 94 (96)
+-+|..||+. ...|.||..+|.++......
T Consensus 22 HvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~ 56 (101)
T 3vk6_A 22 HVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRG 56 (101)
T ss_dssp CEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGG
T ss_pred ccHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccC
Confidence 7899999954 46999999999998766543
No 48
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.20 E-value=4.9 Score=23.40 Aligned_cols=36 Identities=25% Similarity=0.722 Sum_probs=26.5
Q ss_pred ccccchhhhcCC------CCCcccccccc----cCccccCCccccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAYS----KGVCAMCGKQVLD 87 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAYk----kgiCamCGKki~d 87 (96)
..|.||...+.. +|.||..|..+ ...|.+|...|..
T Consensus 16 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 16 PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 478888775543 37799999753 3689999988764
No 49
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=41.27 E-value=20 Score=20.21 Aligned_cols=39 Identities=28% Similarity=0.444 Sum_probs=22.2
Q ss_pred ccccchhhhcCCCCCc--cccccccc--CccccCCcccccccc
Q 034393 52 TKCIICKQQVHQDAKY--CHTCAYSK--GVCAMCGKQVLDTKF 90 (96)
Q Consensus 52 ~~C~~CK~~v~q~~~Y--Cq~CAYkk--giCamCGKki~dt~~ 90 (96)
..|..|...|...... -..-.|.. -.|+.|++.+.+...
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~ 54 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLF 54 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCC
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCe
Confidence 3888888877643211 11111221 158889988877643
No 50
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.91 E-value=6.8 Score=21.40 Aligned_cols=22 Identities=18% Similarity=0.813 Sum_probs=15.3
Q ss_pred ccccchhhhcCC------CCCccccccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAY 73 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAY 73 (96)
..|.||...+.. +|.||..|..
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~ 43 (58)
T 2ecj_A 16 ASCSVCLEYLKEPVIIECGHNFCKACIT 43 (58)
T ss_dssp CBCSSSCCBCSSCCCCSSCCCCCHHHHH
T ss_pred CCCccCCcccCccEeCCCCCccCHHHHH
Confidence 378888776544 3778888853
No 51
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=39.98 E-value=7.7 Score=26.72 Aligned_cols=36 Identities=25% Similarity=0.596 Sum_probs=26.8
Q ss_pred cccchhhhcC------CCCCccccccccc--CccccCCcccccc
Q 034393 53 KCIICKQQVH------QDAKYCHTCAYSK--GVCAMCGKQVLDT 88 (96)
Q Consensus 53 ~C~~CK~~v~------q~~~YCq~CAYkk--giCamCGKki~dt 88 (96)
.|..|+..+. .+.-||..|.++. -.|+.|++.|...
T Consensus 89 ~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 89 KCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPT 132 (182)
T ss_dssp SCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCSS
T ss_pred ccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCCC
Confidence 7888887764 3467898887664 5899999988753
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=39.85 E-value=9.5 Score=23.49 Aligned_cols=36 Identities=22% Similarity=0.662 Sum_probs=27.1
Q ss_pred ccccchhhhcC----------CCCCcccccccc-----cCccccCCccccc
Q 034393 52 TKCIICKQQVH----------QDAKYCHTCAYS-----KGVCAMCGKQVLD 87 (96)
Q Consensus 52 ~~C~~CK~~v~----------q~~~YCq~CAYk-----kgiCamCGKki~d 87 (96)
..|.||-..+. =+|.+|+.|..+ .+.|.+|-+.+.+
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 37888888773 357899999643 4689999988764
No 53
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.40 E-value=9.1 Score=22.24 Aligned_cols=36 Identities=25% Similarity=0.616 Sum_probs=26.4
Q ss_pred ccccchhhhcCC-------CCCcccccccc----cCccccCCccccc
Q 034393 52 TKCIICKQQVHQ-------DAKYCHTCAYS----KGVCAMCGKQVLD 87 (96)
Q Consensus 52 ~~C~~CK~~v~q-------~~~YCq~CAYk----kgiCamCGKki~d 87 (96)
..|.||...+.. +|.||..|... ...|.+|...+..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 478898775432 26799999743 5689999998764
No 54
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=38.33 E-value=9.9 Score=26.35 Aligned_cols=31 Identities=29% Similarity=0.896 Sum_probs=25.2
Q ss_pred ccccchhhhcCCC--CCcccccccc--cCccccCC
Q 034393 52 TKCIICKQQVHQD--AKYCHTCAYS--KGVCAMCG 82 (96)
Q Consensus 52 ~~C~~CK~~v~q~--~~YCq~CAYk--kgiCamCG 82 (96)
.+|.||-+-|.+. -+-|..|.|- .+.|-+||
T Consensus 30 GkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg 64 (109)
T 2k0a_A 30 GKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICN 64 (109)
T ss_dssp TCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTS
T ss_pred CcccccCCccCCcceEEECCcCCCCCcCCceEEcC
Confidence 5888888888776 7788888875 47888988
No 55
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=37.50 E-value=13 Score=29.08 Aligned_cols=37 Identities=24% Similarity=0.573 Sum_probs=30.0
Q ss_pred ccccchhhhcCC------CCC-cccccccccCccccCCcccccc
Q 034393 52 TKCIICKQQVHQ------DAK-YCHTCAYSKGVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~-YCq~CAYkkgiCamCGKki~dt 88 (96)
..|.||-..... +|. +|..|+..-..|.+|-..|..+
T Consensus 296 ~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGT 339 (345)
T ss_dssp CBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEE
T ss_pred CCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCe
Confidence 489999875432 366 9999999999999999988765
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.41 E-value=18 Score=22.96 Aligned_cols=34 Identities=18% Similarity=0.632 Sum_probs=25.2
Q ss_pred cccchhhhcCC-------CCCccccccccc--CccccCCcccc
Q 034393 53 KCIICKQQVHQ-------DAKYCHTCAYSK--GVCAMCGKQVL 86 (96)
Q Consensus 53 ~C~~CK~~v~q-------~~~YCq~CAYkk--giCamCGKki~ 86 (96)
.|.||...+.. +|.||..|...- ..|.+|...+.
T Consensus 24 ~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 24 RCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp SCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 78888764322 378999998554 67999999874
No 57
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=37.11 E-value=9.4 Score=23.31 Aligned_cols=37 Identities=22% Similarity=0.637 Sum_probs=28.9
Q ss_pred ccccchhhhcCC----C-CC--cccccccccCccccCCcccccc
Q 034393 52 TKCIICKQQVHQ----D-AK--YCHTCAYSKGVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~q----~-~~--YCq~CAYkkgiCamCGKki~dt 88 (96)
..|.||...... + +| +|..|+..-..|.+|-..|..+
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEE
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCe
Confidence 379999765433 3 44 6999998888999999998765
No 58
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=36.67 E-value=5.9 Score=25.90 Aligned_cols=29 Identities=28% Similarity=0.686 Sum_probs=15.9
Q ss_pred cccchhhhcCCCCCcccccccccCccccCC
Q 034393 53 KCIICKQQVHQDAKYCHTCAYSKGVCAMCG 82 (96)
Q Consensus 53 ~C~~CK~~v~q~~~YCq~CAYkkgiCamCG 82 (96)
.|..|...+.+.+ ||+.|--.-..|.-||
T Consensus 20 ~C~~C~~~~~~~a-fCPeCgq~Le~lkACG 48 (81)
T 2jrp_A 20 HCETCAKDFSLQA-LCPDCRQPLQVLKACG 48 (81)
T ss_dssp ECTTTCCEEEEEE-ECSSSCSCCCEEEETT
T ss_pred ECccccccCCCcc-cCcchhhHHHHHHhcC
Confidence 3555555555555 5555555555555555
No 59
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.30 E-value=36 Score=19.59 Aligned_cols=38 Identities=29% Similarity=0.450 Sum_probs=20.0
Q ss_pred cccchhhhcCCCCCc--cccccccc--CccccCCcccccccc
Q 034393 53 KCIICKQQVHQDAKY--CHTCAYSK--GVCAMCGKQVLDTKF 90 (96)
Q Consensus 53 ~C~~CK~~v~q~~~Y--Cq~CAYkk--giCamCGKki~dt~~ 90 (96)
.|..|...|.....+ =.+-.|.. -.|+.|++.+.+...
T Consensus 13 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~ 54 (77)
T 1g47_A 13 TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLF 54 (77)
T ss_dssp BCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCS
T ss_pred CchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCe
Confidence 777887777532111 11111222 257788888776543
No 60
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=36.14 E-value=21 Score=20.18 Aligned_cols=13 Identities=46% Similarity=0.927 Sum_probs=8.7
Q ss_pred ccccCCccccccc
Q 034393 77 VCAMCGKQVLDTK 89 (96)
Q Consensus 77 iCamCGKki~dt~ 89 (96)
.|+.|++.|.+..
T Consensus 33 ~C~~C~~~L~~~~ 45 (66)
T 1nyp_A 33 VCAKCEKPFLGHR 45 (66)
T ss_dssp BCTTTCCBCSSSC
T ss_pred EECCCCCCCCCCc
Confidence 5777777776543
No 61
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.12 E-value=3.3 Score=23.88 Aligned_cols=37 Identities=22% Similarity=0.649 Sum_probs=27.3
Q ss_pred ccccchhhhcCC-----CCCccccccc----ccCccccCCcccccc
Q 034393 52 TKCIICKQQVHQ-----DAKYCHTCAY----SKGVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~q-----~~~YCq~CAY----kkgiCamCGKki~dt 88 (96)
..|.||...... +|.||..|.. ....|.+|...|...
T Consensus 16 ~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 478888776433 4778999975 457899999887754
No 62
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=35.08 E-value=9.6 Score=21.74 Aligned_cols=36 Identities=19% Similarity=0.535 Sum_probs=25.4
Q ss_pred ccccchhhhcC-------C--CCCccccccc----ccCccccCCccccc
Q 034393 52 TKCIICKQQVH-------Q--DAKYCHTCAY----SKGVCAMCGKQVLD 87 (96)
Q Consensus 52 ~~C~~CK~~v~-------q--~~~YCq~CAY----kkgiCamCGKki~d 87 (96)
..|.||...+. . +|.||..|.. ....|.+|-..|..
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 37888865442 1 3778888875 35789999888754
No 63
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=34.92 E-value=12 Score=26.35 Aligned_cols=35 Identities=26% Similarity=0.614 Sum_probs=26.6
Q ss_pred CCCCccccchhhhc---CCCCCcccccccccCccccCCcc
Q 034393 48 PYGNTKCIICKQQV---HQDAKYCHTCAYSKGVCAMCGKQ 84 (96)
Q Consensus 48 py~~~~C~~CK~~v---~q~~~YCq~CAYkkgiCamCGKk 84 (96)
+|+...|.+|-+.+ -..++.|..|-+ -+|+-||.-
T Consensus 65 ~~~~~~C~~C~~~fg~l~~~g~~C~~C~~--~VC~~C~~~ 102 (153)
T 2zet_C 65 HLNETHCARCLQPYRLLLNSRRQCLECSL--FVCKSCSHA 102 (153)
T ss_dssp TGGGTBCTTTCCBGGGCSSCCEECTTTCC--EECGGGEEC
T ss_pred cCCCccchhhcCccccccCCCCcCCCCCc--hhhcccccc
Confidence 45556999999964 333999999954 599999953
No 64
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=34.62 E-value=14 Score=22.00 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=15.3
Q ss_pred cccchhhhcCCCCCcccccc
Q 034393 53 KCIICKQQVHQDAKYCHTCA 72 (96)
Q Consensus 53 ~C~~CK~~v~q~~~YCq~CA 72 (96)
+|..|++.=....-||+.|-
T Consensus 15 kC~~C~~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 15 KCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp ECTTTCCEECSSCSSCTTTC
T ss_pred ecccccccCCCccchhhHHH
Confidence 89999954444489999993
No 65
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.63 E-value=40 Score=20.38 Aligned_cols=13 Identities=15% Similarity=0.496 Sum_probs=7.7
Q ss_pred ccccCCccccccc
Q 034393 77 VCAMCGKQVLDTK 89 (96)
Q Consensus 77 iCamCGKki~dt~ 89 (96)
.|+.|++.|.+..
T Consensus 44 ~C~~C~~~L~~~~ 56 (91)
T 2d8y_A 44 RCSYCNNKLSLGT 56 (91)
T ss_dssp BCTTTCCBCCTTT
T ss_pred eeCCCCCCCCCCC
Confidence 4566666665543
No 66
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=33.60 E-value=7.1 Score=24.02 Aligned_cols=35 Identities=20% Similarity=0.524 Sum_probs=25.9
Q ss_pred ccccchhhhcCC---------CCCccccccc----ccCccccCCcccc
Q 034393 52 TKCIICKQQVHQ---------DAKYCHTCAY----SKGVCAMCGKQVL 86 (96)
Q Consensus 52 ~~C~~CK~~v~q---------~~~YCq~CAY----kkgiCamCGKki~ 86 (96)
..|.||-..+.. +|.||..|.. ....|.+|-..+.
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 479999765543 3678888864 4678999988764
No 67
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=33.53 E-value=13 Score=20.51 Aligned_cols=9 Identities=44% Similarity=1.021 Sum_probs=7.5
Q ss_pred ccCCCCCCC
Q 034393 43 KKRWTPYGN 51 (96)
Q Consensus 43 k~r~~py~~ 51 (96)
-+||.||++
T Consensus 18 gnrfepY~N 26 (30)
T 2ot8_C 18 GNRFEPYAN 26 (30)
T ss_pred CcccccccC
Confidence 479999986
No 68
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.14 E-value=38 Score=19.28 Aligned_cols=14 Identities=36% Similarity=0.845 Sum_probs=8.3
Q ss_pred ccccCCcccccccc
Q 034393 77 VCAMCGKQVLDTKF 90 (96)
Q Consensus 77 iCamCGKki~dt~~ 90 (96)
.|+.|++.|.+...
T Consensus 35 ~C~~C~~~L~~~~~ 48 (72)
T 1x61_A 35 VCSTCRAQLRGQHF 48 (72)
T ss_dssp BCSSSCCBCTTSCE
T ss_pred cccccCCcCCcCcC
Confidence 46677777654433
No 69
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.02 E-value=31 Score=19.78 Aligned_cols=15 Identities=20% Similarity=0.598 Sum_probs=8.8
Q ss_pred ccccCCccccccccc
Q 034393 77 VCAMCGKQVLDTKFY 91 (96)
Q Consensus 77 iCamCGKki~dt~~y 91 (96)
.|+.|++.|.+...+
T Consensus 37 ~C~~C~~~L~~~~f~ 51 (72)
T 1x4l_A 37 NCKKCSLSLVGRGFL 51 (72)
T ss_dssp BCSSSCCBCTTSCCE
T ss_pred EeccCCCcCCCCccE
Confidence 566677666654443
No 70
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.95 E-value=29 Score=19.70 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=6.5
Q ss_pred ccccCCcccccc
Q 034393 77 VCAMCGKQVLDT 88 (96)
Q Consensus 77 iCamCGKki~dt 88 (96)
.|+.|++.|.+.
T Consensus 33 ~C~~C~~~L~~~ 44 (70)
T 2d8z_A 33 VCTACRKQLSGQ 44 (70)
T ss_dssp BCSSSCCBCTTS
T ss_pred ccCCCCCcCCcC
Confidence 455566655443
No 71
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=31.66 E-value=16 Score=22.46 Aligned_cols=21 Identities=29% Similarity=0.744 Sum_probs=15.9
Q ss_pred ccccchhhhcCCCCCcccccc
Q 034393 52 TKCIICKQQVHQDAKYCHTCA 72 (96)
Q Consensus 52 ~~C~~CK~~v~q~~~YCq~CA 72 (96)
-+|..|++.=....-||+.|-
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTC
T ss_pred eecccccccCCCccchhHHHH
Confidence 389999954444499999993
No 72
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.01 E-value=23 Score=20.71 Aligned_cols=9 Identities=22% Similarity=0.910 Sum_probs=4.0
Q ss_pred cccCCcccc
Q 034393 78 CAMCGKQVL 86 (96)
Q Consensus 78 CamCGKki~ 86 (96)
|+.|++.|.
T Consensus 38 C~~C~~~L~ 46 (76)
T 1x68_A 38 CGKCSVSLV 46 (76)
T ss_dssp CTTTCCBCS
T ss_pred hhhCCCcCC
Confidence 444444443
No 73
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.55 E-value=19 Score=20.92 Aligned_cols=37 Identities=19% Similarity=0.607 Sum_probs=27.0
Q ss_pred ccccchhhhcC---------CCCCccccccc----ccCccccCCcccccc
Q 034393 52 TKCIICKQQVH---------QDAKYCHTCAY----SKGVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~---------q~~~YCq~CAY----kkgiCamCGKki~dt 88 (96)
..|.||...+. =+|.||..|.. ....|.+|...+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 48888865442 13779999985 457899999988654
No 74
>2z5k_B Nuclear RNA export factor 1; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, TAP, NLS; 2.60A {Homo sapiens} PDB: 2z5m_B
Probab=30.29 E-value=14 Score=19.94 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=8.4
Q ss_pred cccCCCCCCC
Q 034393 42 KKKRWTPYGN 51 (96)
Q Consensus 42 ~k~r~~py~~ 51 (96)
.+.||+||+.
T Consensus 16 ~~~RytPY~~ 25 (30)
T 2z5k_B 16 PRVRYNPYTT 25 (30)
T ss_pred ccccccCccc
Confidence 4779999986
No 75
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.89 E-value=33 Score=19.52 Aligned_cols=13 Identities=15% Similarity=0.531 Sum_probs=8.3
Q ss_pred ccccCCccccccc
Q 034393 77 VCAMCGKQVLDTK 89 (96)
Q Consensus 77 iCamCGKki~dt~ 89 (96)
.|+.|++.|.+..
T Consensus 35 ~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 35 LCSGCEQPLGSRS 47 (72)
T ss_dssp BCTTTCCBTTTSC
T ss_pred eECCCCCcCCCCc
Confidence 5667777766544
No 76
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.52 E-value=36 Score=20.47 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=20.4
Q ss_pred ccccchhhhcCCCCCccccccccc--CccccCCccccccccc
Q 034393 52 TKCIICKQQVHQDAKYCHTCAYSK--GVCAMCGKQVLDTKFY 91 (96)
Q Consensus 52 ~~C~~CK~~v~q~~~YCq~CAYkk--giCamCGKki~dt~~y 91 (96)
..|..|...|......-..-.|.. -.|+.|++.|.+...|
T Consensus 26 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~ 67 (89)
T 1x64_A 26 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYF 67 (89)
T ss_dssp CBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCE
T ss_pred CCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeE
Confidence 378888777653110001111111 2577888888765443
No 77
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=29.10 E-value=6.5 Score=23.01 Aligned_cols=37 Identities=24% Similarity=0.653 Sum_probs=25.0
Q ss_pred ccccchhhhcC------CC-CC--ccccccccc----CccccCCcccccc
Q 034393 52 TKCIICKQQVH------QD-AK--YCHTCAYSK----GVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~------q~-~~--YCq~CAYkk----giCamCGKki~dt 88 (96)
..|.||-.... -+ +| +|..|+-+- ..|.+|-..|.++
T Consensus 9 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp SCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 37888865332 25 44 489998543 3599999998764
No 78
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.67 E-value=37 Score=19.26 Aligned_cols=14 Identities=36% Similarity=0.985 Sum_probs=8.0
Q ss_pred ccccCCcccccccc
Q 034393 77 VCAMCGKQVLDTKF 90 (96)
Q Consensus 77 iCamCGKki~dt~~ 90 (96)
.|+.|++.|.+...
T Consensus 33 ~C~~C~~~L~~~~~ 46 (69)
T 2cur_A 33 VCVTCSKKLAGQRF 46 (69)
T ss_dssp BCTTTCCBCTTSCE
T ss_pred EECCCCCCCCCCcc
Confidence 46666666654443
No 79
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=28.43 E-value=16 Score=23.00 Aligned_cols=36 Identities=19% Similarity=0.647 Sum_probs=26.8
Q ss_pred ccccchhhhcCC------CCCcccccccc-----cCccccCCccccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAYS-----KGVCAMCGKQVLD 87 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAYk-----kgiCamCGKki~d 87 (96)
..|.||...+.. +|.||..|... ...|++|...+..
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 378888765432 48899999742 5689999998764
No 80
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=28.16 E-value=19 Score=21.01 Aligned_cols=36 Identities=25% Similarity=0.757 Sum_probs=24.9
Q ss_pred ccccchhhhcCC-------CCCccccccccc------CccccCCccccc
Q 034393 52 TKCIICKQQVHQ-------DAKYCHTCAYSK------GVCAMCGKQVLD 87 (96)
Q Consensus 52 ~~C~~CK~~v~q-------~~~YCq~CAYkk------giCamCGKki~d 87 (96)
..|.||...+.. +|.||..|...- ..|.+|...+..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 378888764432 578999996321 489999997653
No 81
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=27.55 E-value=14 Score=20.91 Aligned_cols=36 Identities=22% Similarity=0.667 Sum_probs=26.3
Q ss_pred ccccchhhhc-----------CC--CCCccccccc----ccCccccCCccccc
Q 034393 52 TKCIICKQQV-----------HQ--DAKYCHTCAY----SKGVCAMCGKQVLD 87 (96)
Q Consensus 52 ~~C~~CK~~v-----------~q--~~~YCq~CAY----kkgiCamCGKki~d 87 (96)
..|.||...+ .. +|.||..|.. ....|.+|...+..
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4788997643 22 3779999974 45689999988764
No 82
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.17 E-value=15 Score=20.53 Aligned_cols=22 Identities=23% Similarity=0.718 Sum_probs=15.8
Q ss_pred ccccchhhhcCC------CCCccccccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAY 73 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAY 73 (96)
..|.||...+.. +|.||..|..
T Consensus 21 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~ 48 (63)
T 2ysj_A 21 VICPICLDILQKPVTIDCGHNFCLKCIT 48 (63)
T ss_dssp CBCTTTCSBCSSCEECTTSSEECHHHHH
T ss_pred CCCCcCCchhCCeEEeCCCCcchHHHHH
Confidence 489999876544 3778888863
No 83
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=27.03 E-value=16 Score=24.15 Aligned_cols=12 Identities=42% Similarity=1.035 Sum_probs=9.5
Q ss_pred cCccccCCcccc
Q 034393 75 KGVCAMCGKQVL 86 (96)
Q Consensus 75 kgiCamCGKki~ 86 (96)
-|+|..||..|-
T Consensus 81 yg~C~~Cg~~I~ 92 (112)
T 2kq9_A 81 FGTCVKCGKRIS 92 (112)
T ss_dssp CSEETTTTEECC
T ss_pred cCeeCCCCCccc
Confidence 378999998874
No 84
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=26.51 E-value=11 Score=23.50 Aligned_cols=37 Identities=27% Similarity=0.645 Sum_probs=26.5
Q ss_pred ccccchhhhcC-------CCCCcccccccc----cCccccCCcccccc
Q 034393 52 TKCIICKQQVH-------QDAKYCHTCAYS----KGVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~-------q~~~YCq~CAYk----kgiCamCGKki~dt 88 (96)
-.|.||...+. =+|.||..|... ...|.+|+..+...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 37888876432 247899999643 37899999988743
No 85
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=26.41 E-value=19 Score=26.03 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=11.4
Q ss_pred cccCccccCCcccc
Q 034393 73 YSKGVCAMCGKQVL 86 (96)
Q Consensus 73 YkkgiCamCGKki~ 86 (96)
.+.|.|++||..+.
T Consensus 18 ~Q~g~C~IC~~~l~ 31 (157)
T 1e7l_A 18 AQNGKCLICQRELN 31 (157)
T ss_dssp HTTTBCTTTCCBCC
T ss_pred HhCCcCcccCCccc
Confidence 46789999999864
No 86
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=26.25 E-value=22 Score=23.97 Aligned_cols=19 Identities=16% Similarity=0.618 Sum_probs=13.9
Q ss_pred CCCCCCccccchhhhcCCC
Q 034393 46 WTPYGNTKCIICKQQVHQD 64 (96)
Q Consensus 46 ~~py~~~~C~~CK~~v~q~ 64 (96)
|++-+...|+.|+++|..+
T Consensus 15 YAKS~RA~Ck~Ck~kI~Kg 33 (114)
T 1v9x_A 15 YAKSSRSSCKTCKSVINKE 33 (114)
T ss_dssp ECSCSCCBCSSSCCBCCSS
T ss_pred EeCCCCCCchhhCCccCCC
Confidence 4555547999999987654
No 87
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=26.23 E-value=18 Score=24.28 Aligned_cols=19 Identities=21% Similarity=0.646 Sum_probs=13.9
Q ss_pred CCCCCCccccchhhhcCCC
Q 034393 46 WTPYGNTKCIICKQQVHQD 64 (96)
Q Consensus 46 ~~py~~~~C~~CK~~v~q~ 64 (96)
|++-+..+|+.|+++|..+
T Consensus 10 YAkSgRA~Ck~C~~kI~Kg 28 (117)
T 1uw0_A 10 YAKRGTAGCKKCKEKIVKG 28 (117)
T ss_dssp ECCSSCEECTTSSCEECTT
T ss_pred EeCCCCccchhhCcccCCC
Confidence 4555546999999987665
No 88
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=26.10 E-value=9.8 Score=26.36 Aligned_cols=34 Identities=26% Similarity=0.666 Sum_probs=18.6
Q ss_pred cccchhhhcC---------CCCCccccccccc----CccccCCcccc
Q 034393 53 KCIICKQQVH---------QDAKYCHTCAYSK----GVCAMCGKQVL 86 (96)
Q Consensus 53 ~C~~CK~~v~---------q~~~YCq~CAYkk----giCamCGKki~ 86 (96)
+|..|+..+. .+.-||..|..+. ++|+.|++.|.
T Consensus 34 ~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp BCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred ccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 5566655442 2245666665432 24777776665
No 89
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.97 E-value=14 Score=16.12 Aligned_cols=14 Identities=36% Similarity=0.900 Sum_probs=8.6
Q ss_pred ccccCCcccccccc
Q 034393 77 VCAMCGKQVLDTKF 90 (96)
Q Consensus 77 iCamCGKki~dt~~ 90 (96)
.|..||+....-+.
T Consensus 4 ~C~~C~k~f~~~~~ 17 (26)
T 2lvu_A 4 VCERCGKRFVQSSQ 17 (26)
Confidence 57777776654443
No 90
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=25.73 E-value=24 Score=23.67 Aligned_cols=20 Identities=10% Similarity=0.471 Sum_probs=14.8
Q ss_pred CCCCCCCccccchhhhcCCC
Q 034393 45 RWTPYGNTKCIICKQQVHQD 64 (96)
Q Consensus 45 r~~py~~~~C~~CK~~v~q~ 64 (96)
-|++-+..+|+.|++++..+
T Consensus 13 EyAkS~Ra~Ck~C~~kI~Kg 32 (111)
T 3odc_A 13 EYAKSNRSTCKGCMEKIEKG 32 (111)
T ss_dssp EECSSSCCBCTTTCCBCCTT
T ss_pred EEeecCCccccccCCCccCC
Confidence 34555557999999988765
No 91
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=25.67 E-value=35 Score=22.40 Aligned_cols=20 Identities=20% Similarity=0.654 Sum_probs=14.6
Q ss_pred CCCCCCCccccchhhhcCCC
Q 034393 45 RWTPYGNTKCIICKQQVHQD 64 (96)
Q Consensus 45 r~~py~~~~C~~CK~~v~q~ 64 (96)
-|++-+..+|+.|++++..+
T Consensus 19 EyAkS~Ra~Ck~C~~kI~Kg 38 (106)
T 2dmj_A 19 EYAKSGRASCKKCSESIPKD 38 (106)
T ss_dssp EECCSSCCBCSSSCCBCCTT
T ss_pred EEeCCCCCcchhhCCccCCC
Confidence 45555547999999987665
No 92
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=25.19 E-value=26 Score=18.13 Aligned_cols=13 Identities=54% Similarity=0.846 Sum_probs=10.0
Q ss_pred CccccCCcccccc
Q 034393 76 GVCAMCGKQVLDT 88 (96)
Q Consensus 76 giCamCGKki~dt 88 (96)
..|+.|||.|-..
T Consensus 4 ~~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 4 PNCARCGKIVYPT 16 (31)
T ss_dssp CBCSSSCSBCCGG
T ss_pred CcCCccCCEEecc
Confidence 4799999988543
No 93
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.10 E-value=18 Score=15.77 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=9.0
Q ss_pred ccccCCcccccccc
Q 034393 77 VCAMCGKQVLDTKF 90 (96)
Q Consensus 77 iCamCGKki~dt~~ 90 (96)
.|..||+....-+.
T Consensus 4 ~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 4 QCQYCEFRSADSSN 17 (30)
T ss_dssp CCSSSSCCCSCSHH
T ss_pred cCCCCCCccCCHHH
Confidence 57778877655443
No 94
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=30.22 E-value=16 Score=16.16 Aligned_cols=14 Identities=36% Similarity=0.690 Sum_probs=8.6
Q ss_pred ccccCCcccccccc
Q 034393 77 VCAMCGKQVLDTKF 90 (96)
Q Consensus 77 iCamCGKki~dt~~ 90 (96)
.|..||+...+-..
T Consensus 5 ~C~~C~k~f~~~~~ 18 (30)
T 2lvr_A 5 VCIHCQRQFADPGA 18 (30)
Confidence 57777776655443
No 95
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.31 E-value=23 Score=15.26 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=8.3
Q ss_pred ccccCCccccccc
Q 034393 77 VCAMCGKQVLDTK 89 (96)
Q Consensus 77 iCamCGKki~dt~ 89 (96)
.|..||+.....+
T Consensus 4 ~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 4 KCPHCDKKFNQVG 16 (29)
T ss_dssp CCSSCCCCCCTTT
T ss_pred cCCCCCcccCCHH
Confidence 5777887665443
No 96
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.05 E-value=18 Score=20.98 Aligned_cols=36 Identities=17% Similarity=0.575 Sum_probs=25.8
Q ss_pred ccccchhhhcCC---------CCCccccccc----ccCccccCCccccc
Q 034393 52 TKCIICKQQVHQ---------DAKYCHTCAY----SKGVCAMCGKQVLD 87 (96)
Q Consensus 52 ~~C~~CK~~v~q---------~~~YCq~CAY----kkgiCamCGKki~d 87 (96)
..|.||-..+.. +|.||..|.. ....|.+|-..+..
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 489999865433 3678888864 35689999887754
No 97
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.84 E-value=16 Score=16.21 Aligned_cols=14 Identities=36% Similarity=0.788 Sum_probs=8.7
Q ss_pred ccccCCcccccccc
Q 034393 77 VCAMCGKQVLDTKF 90 (96)
Q Consensus 77 iCamCGKki~dt~~ 90 (96)
.|..||+....-..
T Consensus 4 ~C~~C~k~f~~~~~ 17 (29)
T 2lvt_A 4 QCVMCGKAFTQASS 17 (29)
Confidence 57778876654443
No 98
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=23.64 E-value=17 Score=23.20 Aligned_cols=37 Identities=19% Similarity=0.629 Sum_probs=27.1
Q ss_pred ccccchhhhcCC------CCCcccccccc----c-CccccCCcccccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAYS----K-GVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAYk----k-giCamCGKki~dt 88 (96)
-.|.||...+.. ++.||..|..+ . ..|.+|...+...
T Consensus 19 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 378899765433 37799999754 2 3899999988754
No 99
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=23.58 E-value=15 Score=22.44 Aligned_cols=36 Identities=28% Similarity=0.659 Sum_probs=25.5
Q ss_pred ccccchhhhcC-------CCCCcccccccc----cCccccCCccccc
Q 034393 52 TKCIICKQQVH-------QDAKYCHTCAYS----KGVCAMCGKQVLD 87 (96)
Q Consensus 52 ~~C~~CK~~v~-------q~~~YCq~CAYk----kgiCamCGKki~d 87 (96)
..|.||...+. =+|.||..|... ...|.+|...+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 37888876532 237799999633 5689999998763
No 100
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=22.76 E-value=29 Score=23.61 Aligned_cols=20 Identities=20% Similarity=0.654 Sum_probs=14.9
Q ss_pred CCCCCCCccccchhhhcCCC
Q 034393 45 RWTPYGNTKCIICKQQVHQD 64 (96)
Q Consensus 45 r~~py~~~~C~~CK~~v~q~ 64 (96)
-|++-+..+|+.|+++|..+
T Consensus 32 EyAkS~RA~Ck~C~~kI~Kg 51 (116)
T 3od8_A 32 EYAKSGRASCKKCSESIPKD 51 (116)
T ss_dssp EECSSSCCBCTTTCCBCCTT
T ss_pred EEeccCCccCcccCCccCCC
Confidence 34555557999999988765
No 101
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=22.74 E-value=27 Score=24.46 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=9.3
Q ss_pred CccccCCcccc
Q 034393 76 GVCAMCGKQVL 86 (96)
Q Consensus 76 giCamCGKki~ 86 (96)
|+|..||..|-
T Consensus 112 g~C~~Cg~~Ip 122 (151)
T 1tjl_A 112 GYCESCGVEIG 122 (151)
T ss_dssp SBCSSSSCBCC
T ss_pred ceeCCCCCcch
Confidence 78999998874
No 102
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=22.44 E-value=28 Score=23.58 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=9.5
Q ss_pred CccccCCcccc
Q 034393 76 GVCAMCGKQVL 86 (96)
Q Consensus 76 giCamCGKki~ 86 (96)
|+|..||..|-
T Consensus 57 G~C~~CGe~Ip 67 (108)
T 2kgo_A 57 DECEECGAPIP 67 (108)
T ss_dssp SBCTTTCCBCC
T ss_pred ceecccCCccc
Confidence 79999999884
No 103
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.33 E-value=36 Score=20.24 Aligned_cols=23 Identities=30% Similarity=0.699 Sum_probs=20.1
Q ss_pred ccccchhhhcCCCCCcccccccc
Q 034393 52 TKCIICKQQVHQDAKYCHTCAYS 74 (96)
Q Consensus 52 ~~C~~CK~~v~q~~~YCq~CAYk 74 (96)
..|..|...++.+..+|..|-|+
T Consensus 15 ~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCEECTTCSSCSSSSSC
T ss_pred ccCCCCCCcCCCCceecCCCCCc
Confidence 48999999999999999988776
No 104
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.16 E-value=39 Score=20.22 Aligned_cols=22 Identities=14% Similarity=0.588 Sum_probs=15.9
Q ss_pred CCccccccc----ccCccccCCcccc
Q 034393 65 AKYCHTCAY----SKGVCAMCGKQVL 86 (96)
Q Consensus 65 ~~YCq~CAY----kkgiCamCGKki~ 86 (96)
|.|+..|-. ....|++|-..+.
T Consensus 50 H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 50 HSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CccChHHHHHHHHhCCCCCCcCCCcc
Confidence 667777753 4568999987764
No 105
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.14 E-value=20 Score=15.54 Aligned_cols=12 Identities=17% Similarity=0.872 Sum_probs=7.8
Q ss_pred ccccCCcccccc
Q 034393 77 VCAMCGKQVLDT 88 (96)
Q Consensus 77 iCamCGKki~dt 88 (96)
.|..||+.....
T Consensus 3 ~C~~C~k~f~~~ 14 (27)
T 1znf_A 3 KCGLCERSFVEK 14 (27)
T ss_dssp BCSSSCCBCSSH
T ss_pred cCCCCCCcCCCH
Confidence 477788776543
No 106
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.09 E-value=24 Score=15.60 Aligned_cols=14 Identities=14% Similarity=0.717 Sum_probs=8.7
Q ss_pred ccccCCcccccccc
Q 034393 77 VCAMCGKQVLDTKF 90 (96)
Q Consensus 77 iCamCGKki~dt~~ 90 (96)
.|..||+.....+.
T Consensus 4 ~C~~C~k~f~~~~~ 17 (30)
T 1paa_A 4 ACGLCNRAFTRRDL 17 (30)
T ss_dssp BCTTTCCBCSSSHH
T ss_pred CCcccCcccCChHH
Confidence 47778877654443
No 107
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=21.74 E-value=20 Score=24.27 Aligned_cols=37 Identities=22% Similarity=0.503 Sum_probs=26.9
Q ss_pred ccccchhhhcCC------CCCcccccccc-----cCccccCCcccccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAYS-----KGVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAYk-----kgiCamCGKki~dt 88 (96)
-.|.||...+.. +|.||..|... ...|.+|...+...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 479999875543 36799999642 23799999988754
No 108
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=21.68 E-value=24 Score=20.92 Aligned_cols=10 Identities=50% Similarity=1.172 Sum_probs=8.1
Q ss_pred ccccCCcccc
Q 034393 77 VCAMCGKQVL 86 (96)
Q Consensus 77 iCamCGKki~ 86 (96)
+|--|||+|+
T Consensus 19 vC~~CgkPi~ 28 (44)
T 2lo3_A 19 VCEKCGKPLA 28 (44)
T ss_dssp ECTTTCCEEE
T ss_pred hhcccCCcch
Confidence 7888888875
No 109
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.14 E-value=16 Score=15.98 Aligned_cols=12 Identities=42% Similarity=0.875 Sum_probs=7.7
Q ss_pred ccccCCcccccc
Q 034393 77 VCAMCGKQVLDT 88 (96)
Q Consensus 77 iCamCGKki~dt 88 (96)
.|..||+.....
T Consensus 4 ~C~~C~k~f~~~ 15 (29)
T 2m0f_A 4 KCRECGKQFTTS 15 (29)
T ss_dssp ECTTTSCEESCH
T ss_pred cCCCCCCccCCh
Confidence 477788765543
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=21.04 E-value=29 Score=28.01 Aligned_cols=37 Identities=22% Similarity=0.565 Sum_probs=28.5
Q ss_pred ccccchhhhcCC------CCCccccccc-----ccCccccCCcccccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAY-----SKGVCAMCGKQVLDT 88 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAY-----kkgiCamCGKki~dt 88 (96)
..|.||-..... +|.+|..|.. ....|++|...+...
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 489999765433 3779999985 468999999988654
No 111
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.94 E-value=17 Score=16.01 Aligned_cols=12 Identities=25% Similarity=0.739 Sum_probs=7.9
Q ss_pred ccccCCcccccc
Q 034393 77 VCAMCGKQVLDT 88 (96)
Q Consensus 77 iCamCGKki~dt 88 (96)
.|..||+....-
T Consensus 5 ~C~~C~k~f~~~ 16 (27)
T 2kvh_A 5 SCSLCPQRSRDF 16 (27)
T ss_dssp ECSSSSCEESSH
T ss_pred cCCCcChhhCCH
Confidence 577788766543
No 112
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.80 E-value=33 Score=23.72 Aligned_cols=22 Identities=9% Similarity=0.416 Sum_probs=16.0
Q ss_pred ccCCCCCCCccccchhhhcCCC
Q 034393 43 KKRWTPYGNTKCIICKQQVHQD 64 (96)
Q Consensus 43 k~r~~py~~~~C~~CK~~v~q~ 64 (96)
.--|++-+...|+.|+++|..+
T Consensus 19 ~vEYAKSgRA~CK~C~~kI~Kg 40 (134)
T 2cs2_A 19 AAEYAKSNRSTCKGCMEKIEKG 40 (134)
T ss_dssp EEEECSSSCCBCSSSCCBCCTT
T ss_pred EEEEeCCCCccchhcCCcccCC
Confidence 4456666657999999987654
No 113
>1rji_A BMKX, potassium channel toxin KX; 3-10 helix, beta sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1wt8_A
Probab=20.66 E-value=46 Score=18.22 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=13.0
Q ss_pred ccccCCccccccccccc
Q 034393 77 VCAMCGKQVLDTKFYKQ 93 (96)
Q Consensus 77 iCamCGKki~dt~~y~q 93 (96)
-|-|||--|+--..|-|
T Consensus 12 ~cvmcglgi~ck~~y~q 28 (31)
T 1rji_A 12 DCVMCGLGISCKNGYCQ 28 (31)
T ss_dssp GGTTTCSSCCBCSSBBS
T ss_pred cEEEeccceEEcceeec
Confidence 68899988877666655
No 114
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.30 E-value=37 Score=20.28 Aligned_cols=12 Identities=33% Similarity=1.054 Sum_probs=7.7
Q ss_pred CccccCCccccc
Q 034393 76 GVCAMCGKQVLD 87 (96)
Q Consensus 76 giCamCGKki~d 87 (96)
.+|+.||+.|.+
T Consensus 16 ~~C~~C~~~I~~ 27 (82)
T 2co8_A 16 DLCALCGEHLYV 27 (82)
T ss_dssp CBCSSSCCBCCT
T ss_pred CCCcccCCCccc
Confidence 466777777654
No 115
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.18 E-value=19 Score=20.04 Aligned_cols=35 Identities=23% Similarity=0.678 Sum_probs=25.2
Q ss_pred ccccchhhhcC-----------C--CCCcccccccc----cCccccCCcccc
Q 034393 52 TKCIICKQQVH-----------Q--DAKYCHTCAYS----KGVCAMCGKQVL 86 (96)
Q Consensus 52 ~~C~~CK~~v~-----------q--~~~YCq~CAYk----kgiCamCGKki~ 86 (96)
..|.||...+. - +|.||..|..+ ...|.+|...|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 47888876432 2 37899999753 568999998764
No 116
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.16 E-value=5.7 Score=23.54 Aligned_cols=34 Identities=24% Similarity=0.588 Sum_probs=26.1
Q ss_pred ccccchhhhcCCC---CCcccccccccCccccCCcccc
Q 034393 52 TKCIICKQQVHQD---AKYCHTCAYSKGVCAMCGKQVL 86 (96)
Q Consensus 52 ~~C~~CK~~v~q~---~~YCq~CAYkkgiCamCGKki~ 86 (96)
..|..|...+... .|. ..|..+.-.|.-||+.+.
T Consensus 18 ~~C~~C~~~~~~~~L~~H~-~~c~~~~~~C~~C~~~~~ 54 (75)
T 2d9k_A 18 AVCQHCDLELSILKLKEHE-DYCGARTELCGNCGRNVL 54 (75)
T ss_dssp EECSSSCCEECHHHHHHHH-HHHHHCEEECSSSCCEEE
T ss_pred cCCcccChHhhHHHHHHHH-hHcCCCceEcccCCCcCc
Confidence 3899998877432 566 778888889999999764
No 117
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.14 E-value=55 Score=22.12 Aligned_cols=25 Identities=36% Similarity=0.756 Sum_probs=16.1
Q ss_pred cccchhhhcCCCCCcccccccccCccccCCccc
Q 034393 53 KCIICKQQVHQDAKYCHTCAYSKGVCAMCGKQV 85 (96)
Q Consensus 53 ~C~~CK~~v~q~~~YCq~CAYkkgiCamCGKki 85 (96)
.|..|....... .....|+.||.++
T Consensus 134 ~C~~Cg~~~~~~--------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 134 VCIGCGRKFSTL--------PPGGVCPDCGSKV 158 (165)
T ss_dssp EESSSCCEESSC--------CGGGBCTTTCCBE
T ss_pred ECCCCCCcccCC--------CCCCcCCCCCCcc
Confidence 777777655433 3345788899775
Done!