Query 034393
Match_columns 96
No_of_seqs 101 out of 103
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 22:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034393.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034393hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j2oa1 g.39.1.3 (A:1-30) Rhom 78.6 0.36 2.6E-05 25.5 1.1 12 77-88 5-16 (30)
2 d1rutx1 g.39.1.3 (X:19-48) LIM 76.3 0.41 3E-05 25.2 0.9 12 77-88 4-15 (30)
3 d1ibia2 g.39.1.3 (A:145-175) C 69.6 0.71 5.2E-05 24.4 0.8 13 77-89 2-14 (31)
4 d1jm7b_ g.44.1.1 (B:) bard1 RI 58.1 3.2 0.00024 24.6 2.5 34 53-86 24-66 (97)
5 d1tjla2 g.39.1.13 (A:111-151) 53.7 2.1 0.00015 23.0 0.9 11 76-86 2-12 (41)
6 d2dloa1 g.39.1.3 (A:8-42) Thyr 53.3 2.2 0.00016 22.9 1.0 13 76-88 9-21 (35)
7 d1ubdc2 g.37.1.1 (C:323-350) Y 52.8 1.2 8.7E-05 23.0 -0.2 17 76-92 3-19 (28)
8 d1bora_ g.44.1.1 (A:) Acute pr 50.3 6.3 0.00046 21.7 2.7 36 53-88 8-50 (56)
9 d1jm7a_ g.44.1.1 (A:) brca1 RI 44.7 3.7 0.00027 24.5 1.1 34 53-86 23-69 (103)
10 d1fbva4 g.44.1.1 (A:356-434) C 44.2 3.9 0.00028 23.8 1.1 38 52-89 24-72 (79)
11 d2c6aa1 g.41.11.1 (A:290-335) 42.3 4.3 0.00031 22.9 1.1 19 53-71 15-33 (46)
12 d1rutx3 g.39.1.3 (X:83-113) LI 38.9 3.7 0.00027 21.4 0.4 14 75-88 2-15 (31)
13 d2epra1 g.37.1.1 (A:350-384) P 38.2 3.4 0.00025 22.1 0.1 13 76-88 6-18 (35)
14 d1k3xa3 g.39.1.8 (A:223-262) E 37.9 4.3 0.00031 21.6 0.5 27 45-71 4-38 (40)
15 d1x3ha1 g.39.1.3 (A:8-42) Leup 36.1 6.1 0.00044 20.5 1.0 11 77-87 10-20 (35)
16 d1e7la2 d.4.1.5 (A:1-103) Reco 33.3 7.1 0.00052 24.7 1.2 14 73-86 18-31 (103)
17 d1uw0a_ g.39.1.12 (A:) DNA lig 33.0 5.5 0.0004 25.1 0.5 19 46-64 10-28 (117)
18 d1wt8a1 g.3.7.2 (A:1-31) Bmkx 31.7 11 0.00078 19.4 1.5 19 53-71 12-30 (31)
19 d2jnea1 g.41.18.1 (A:1-71) Hyp 29.7 4.6 0.00034 24.5 -0.3 36 53-88 4-44 (71)
20 d1g47a2 g.39.1.3 (A:36-70) Pin 28.5 11 0.00077 19.6 1.1 16 77-92 2-17 (35)
21 d2cr8a1 g.41.11.1 (A:8-48) MDM 26.6 10 0.00076 20.8 0.9 19 53-71 6-24 (41)
22 d2dara2 g.39.1.3 (A:8-52) PDZ 25.8 12 0.00087 20.8 1.1 12 76-87 19-30 (45)
23 d1ee8a3 g.39.1.8 (A:211-266) D 24.9 13 0.00097 20.6 1.2 29 43-71 15-51 (56)
24 d1u5sb1 g.39.1.3 (B:72-102) Pi 23.8 9.8 0.00071 19.7 0.4 12 76-87 6-17 (31)
25 d1sr3a_ b.40.9.1 (A:) Heme cha 22.3 19 0.0014 22.6 1.8 36 13-48 68-107 (114)
26 d1r2za3 g.39.1.8 (A:229-274) D 21.8 12 0.00087 20.1 0.5 29 43-71 8-44 (46)
27 d1tdza3 g.39.1.8 (A:225-271) D 21.8 8.9 0.00065 20.8 -0.0 29 43-71 8-44 (47)
28 d1g25a_ g.44.1.1 (A:) TFIIH Ma 21.7 19 0.0014 19.8 1.4 35 53-87 5-55 (65)
29 d1s24a_ g.41.5.1 (A:) Two-iron 21.6 10 0.00075 21.6 0.2 11 72-82 1-11 (56)
30 d1wd2a_ g.44.1.1 (A:) Ariadne- 21.0 35 0.0025 18.9 2.6 34 52-87 7-46 (60)
31 d2cu8a1 g.39.1.3 (A:8-37) Cyst 20.8 15 0.0011 18.8 0.8 11 76-86 3-13 (30)
32 d2ctda2 g.37.1.1 (A:61-90) Zin 20.7 10 0.00076 19.4 0.1 13 77-89 4-16 (30)
No 1
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=78.57 E-value=0.36 Score=25.48 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=10.6
Q ss_pred ccccCCcccccc
Q 034393 77 VCAMCGKQVLDT 88 (96)
Q Consensus 77 iCamCGKki~dt 88 (96)
.||.||++|+|-
T Consensus 5 ~CaGC~~~I~DR 16 (30)
T d1j2oa1 5 TCGGCQQNIGDR 16 (30)
T ss_dssp CBSSSCSCBCSS
T ss_pred ccCCCCCcchHH
Confidence 599999999983
No 2
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=76.34 E-value=0.41 Score=25.16 Aligned_cols=12 Identities=42% Similarity=0.924 Sum_probs=10.6
Q ss_pred ccccCCcccccc
Q 034393 77 VCAMCGKQVLDT 88 (96)
Q Consensus 77 iCamCGKki~dt 88 (96)
.||.||.+|.|=
T Consensus 4 ~CaGC~~~I~DR 15 (30)
T d1rutx1 4 RCAGCGGKIADR 15 (30)
T ss_dssp BBTTTCCBCCCS
T ss_pred ccCCCCCccchh
Confidence 699999999983
No 3
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=69.63 E-value=0.71 Score=24.35 Aligned_cols=13 Identities=46% Similarity=0.874 Sum_probs=10.8
Q ss_pred ccccCCccccccc
Q 034393 77 VCAMCGKQVLDTK 89 (96)
Q Consensus 77 iCamCGKki~dt~ 89 (96)
.||+|||.+-.|.
T Consensus 2 rca~cgk~lestt 14 (31)
T d1ibia2 2 RCAKCGKSLESTT 14 (31)
T ss_dssp ECSSSCCEECSSC
T ss_pred ccccccCccccce
Confidence 4999999987765
No 4
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.15 E-value=3.2 Score=24.58 Aligned_cols=34 Identities=18% Similarity=0.595 Sum_probs=24.2
Q ss_pred cccchhhhc----C--C-CCCcccccc--cccCccccCCcccc
Q 034393 53 KCIICKQQV----H--Q-DAKYCHTCA--YSKGVCAMCGKQVL 86 (96)
Q Consensus 53 ~C~~CK~~v----~--q-~~~YCq~CA--YkkgiCamCGKki~ 86 (96)
.|.||..-+ . . +|.||..|. +-...|+.|...+.
T Consensus 24 ~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (97)
T d1jm7b_ 24 RCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (97)
T ss_dssp SCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCccCCchhhcCceeCCCCCchhHHHHHHHHhccccccCCcCc
Confidence 688887633 2 1 488999994 45567999998764
No 5
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=53.67 E-value=2.1 Score=22.98 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=9.8
Q ss_pred CccccCCcccc
Q 034393 76 GVCAMCGKQVL 86 (96)
Q Consensus 76 giCamCGKki~ 86 (96)
|+|-.||+.|-
T Consensus 2 G~C~~Cg~~I~ 12 (41)
T d1tjla2 2 GYCESCGVEIG 12 (41)
T ss_dssp SBCSSSSCBCC
T ss_pred cchhhCcCccC
Confidence 89999999985
No 6
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.26 E-value=2.2 Score=22.90 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=11.0
Q ss_pred CccccCCcccccc
Q 034393 76 GVCAMCGKQVLDT 88 (96)
Q Consensus 76 giCamCGKki~dt 88 (96)
-.|+.||..|+|-
T Consensus 9 EkC~~C~~~I~dr 21 (35)
T d2dloa1 9 EKCATCSQPILDR 21 (35)
T ss_dssp CBCTTTCCBCCSC
T ss_pred HHHHHhchHHHHH
Confidence 4799999999983
No 7
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.79 E-value=1.2 Score=22.96 Aligned_cols=17 Identities=41% Similarity=0.806 Sum_probs=12.8
Q ss_pred CccccCCcccccccccc
Q 034393 76 GVCAMCGKQVLDTKFYK 92 (96)
Q Consensus 76 giCamCGKki~dt~~y~ 92 (96)
-+|+-|||....-+..+
T Consensus 3 hvc~ecgkaf~essklk 19 (28)
T d1ubdc2 3 HVCAECGKAFVESSKLK 19 (28)
T ss_dssp EECTTTCCEESSHHHHH
T ss_pred chHHHHhHHHHHHHHHH
Confidence 37999999987765543
No 8
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.34 E-value=6.3 Score=21.71 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=25.8
Q ss_pred cccchhhhcCC------CCCccccccccc-CccccCCcccccc
Q 034393 53 KCIICKQQVHQ------DAKYCHTCAYSK-GVCAMCGKQVLDT 88 (96)
Q Consensus 53 ~C~~CK~~v~q------~~~YCq~CAYkk-giCamCGKki~dt 88 (96)
.|.||...+.+ +|.||..|.-+. ..|.+|...|.-.
T Consensus 8 ~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~~~ 50 (56)
T d1bora_ 8 RCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLG 50 (56)
T ss_dssp SCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSCC
T ss_pred CCcccCcccCCCEEecCCCHHhHHHHHcCCCcCcCCCCcccCC
Confidence 67777765433 388999996543 4899999888644
No 9
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.66 E-value=3.7 Score=24.55 Aligned_cols=34 Identities=26% Similarity=0.855 Sum_probs=24.5
Q ss_pred cccchhhhcCC------CCCcccccccc-----c--CccccCCcccc
Q 034393 53 KCIICKQQVHQ------DAKYCHTCAYS-----K--GVCAMCGKQVL 86 (96)
Q Consensus 53 ~C~~CK~~v~q------~~~YCq~CAYk-----k--giCamCGKki~ 86 (96)
.|.||...+.. +|.||..|-+. + ..|++|...+.
T Consensus 23 ~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (103)
T d1jm7a_ 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (103)
T ss_dssp SCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence 68888765543 38999999642 2 27999988774
No 10
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.24 E-value=3.9 Score=23.76 Aligned_cols=38 Identities=21% Similarity=0.561 Sum_probs=28.4
Q ss_pred ccccchhhhcCC------CCCccccccc-----ccCccccCCccccccc
Q 034393 52 TKCIICKQQVHQ------DAKYCHTCAY-----SKGVCAMCGKQVLDTK 89 (96)
Q Consensus 52 ~~C~~CK~~v~q------~~~YCq~CAY-----kkgiCamCGKki~dt~ 89 (96)
..|.||...... +|.||..|.. +...|++|-+.|.++.
T Consensus 24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~ 72 (79)
T d1fbva4 24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72 (79)
T ss_dssp TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence 369999876543 4889999963 3346999999997654
No 11
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.28 E-value=4.3 Score=22.92 Aligned_cols=19 Identities=26% Similarity=0.702 Sum_probs=15.0
Q ss_pred cccchhhhcCCCCCccccc
Q 034393 53 KCIICKQQVHQDAKYCHTC 71 (96)
Q Consensus 53 ~C~~CK~~v~q~~~YCq~C 71 (96)
+|..|++.=....-||+.|
T Consensus 15 kC~~C~~~N~Pl~ryC~rC 33 (46)
T d2c6aa1 15 KCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp ECTTTCCEECSSCSSCTTT
T ss_pred cCccccccCCcchhHhHHH
Confidence 8999975445559999999
No 12
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.90 E-value=3.7 Score=21.40 Aligned_cols=14 Identities=29% Similarity=0.964 Sum_probs=11.4
Q ss_pred cCccccCCcccccc
Q 034393 75 KGVCAMCGKQVLDT 88 (96)
Q Consensus 75 kgiCamCGKki~dt 88 (96)
-|.|+.||..|..+
T Consensus 2 ~g~Ca~C~~~I~~~ 15 (31)
T d1rutx3 2 SGACSACGQSIPAS 15 (31)
T ss_dssp CEECTTTCCEECTT
T ss_pred CcccccccCcCChh
Confidence 47899999998754
No 13
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.17 E-value=3.4 Score=22.09 Aligned_cols=13 Identities=38% Similarity=0.841 Sum_probs=11.1
Q ss_pred CccccCCcccccc
Q 034393 76 GVCAMCGKQVLDT 88 (96)
Q Consensus 76 giCamCGKki~dt 88 (96)
-.|-||||..-|+
T Consensus 6 ~~ce~cgk~frdv 18 (35)
T d2epra1 6 VACEICGKIFRDV 18 (35)
T ss_dssp EEETTTTEEESSH
T ss_pred hhHHHHHHHHHHH
Confidence 4799999998886
No 14
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=37.90 E-value=4.3 Score=21.65 Aligned_cols=27 Identities=19% Similarity=0.630 Sum_probs=18.5
Q ss_pred CCCCCCC--ccccchhhhcCC---C---CCccccc
Q 034393 45 RWTPYGN--TKCIICKQQVHQ---D---AKYCHTC 71 (96)
Q Consensus 45 r~~py~~--~~C~~CK~~v~q---~---~~YCq~C 71 (96)
||.-|+. ..|..|.+.|.. + ..||+.|
T Consensus 4 ~~~VYgR~g~pC~~C~~~I~~~~~~gR~t~~Cp~C 38 (40)
T d1k3xa3 4 RFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGC 38 (40)
T ss_dssp CCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred EEEEeCCCCCccCcCCCEEEEEEECCCCCEEChhh
Confidence 5667775 579999887632 1 5677776
No 15
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.05 E-value=6.1 Score=20.51 Aligned_cols=11 Identities=36% Similarity=0.948 Sum_probs=8.2
Q ss_pred ccccCCccccc
Q 034393 77 VCAMCGKQVLD 87 (96)
Q Consensus 77 iCamCGKki~d 87 (96)
+|+-|++.|++
T Consensus 10 kC~~C~~~I~g 20 (35)
T d1x3ha1 10 KCGGCNRPVLE 20 (35)
T ss_dssp BCTTTCCBCCS
T ss_pred hhhhcCCcccc
Confidence 67778888765
No 16
>d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Probab=33.30 E-value=7.1 Score=24.67 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=9.6
Q ss_pred cccCccccCCcccc
Q 034393 73 YSKGVCAMCGKQVL 86 (96)
Q Consensus 73 YkkgiCamCGKki~ 86 (96)
.+.|.|++||..+.
T Consensus 18 ~Q~g~C~IC~~~~~ 31 (103)
T d1e7la2 18 AQNGKCLICQRELN 31 (103)
T ss_dssp HTTTBCTTTCCBCC
T ss_pred HhCCcCCCCCCCcc
Confidence 35677888887653
No 17
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.95 E-value=5.5 Score=25.11 Aligned_cols=19 Identities=21% Similarity=0.646 Sum_probs=14.5
Q ss_pred CCCCCCccccchhhhcCCC
Q 034393 46 WTPYGNTKCIICKQQVHQD 64 (96)
Q Consensus 46 ~~py~~~~C~~CK~~v~q~ 64 (96)
|++-+..+|+.|+++|.++
T Consensus 10 yAkS~Ra~Ck~C~~~I~Kg 28 (117)
T d1uw0a_ 10 YAKRGTAGCKKCKEKIVKG 28 (117)
T ss_dssp ECCSSCEECTTSSCEECTT
T ss_pred EccCCCcccCCCCccccCC
Confidence 4555547999999998876
No 18
>d1wt8a1 g.3.7.2 (A:1-31) Bmkx {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]}
Probab=31.74 E-value=11 Score=19.38 Aligned_cols=19 Identities=26% Similarity=0.980 Sum_probs=9.8
Q ss_pred cccchhhhcCCCCCccccc
Q 034393 53 KCIICKQQVHQDAKYCHTC 71 (96)
Q Consensus 53 ~C~~CK~~v~q~~~YCq~C 71 (96)
-|..|---++-..-|||+|
T Consensus 12 dcvmcglgisckngycqgc 30 (31)
T d1wt8a1 12 DCVMCGLGISCKNGYCQGC 30 (31)
T ss_dssp GGGGGSSCCCCCSEECTTC
T ss_pred ceEEeccceeecCcccccC
Confidence 4444444444445566655
No 19
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=29.70 E-value=4.6 Score=24.53 Aligned_cols=36 Identities=22% Similarity=0.645 Sum_probs=28.3
Q ss_pred cccchhhhcCC-C-CCcccccc--c-ccCccccCCcccccc
Q 034393 53 KCIICKQQVHQ-D-AKYCHTCA--Y-SKGVCAMCGKQVLDT 88 (96)
Q Consensus 53 ~C~~CK~~v~q-~-~~YCq~CA--Y-kkgiCamCGKki~dt 88 (96)
.|..|.+.+.+ + +-+|..|. | +.+.|.-|+..+--.
T Consensus 4 ~CP~C~~eL~~~~~~~~C~~C~~~~~~~a~CPdC~~~Le~L 44 (71)
T d2jnea1 4 HCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVL 44 (71)
T ss_dssp BCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEE
T ss_pred cCCCccCcccccCCCEehhhhhhhheeEEeCCccccHHHHH
Confidence 79999999977 3 77798886 3 457899999887543
No 20
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.47 E-value=11 Score=19.58 Aligned_cols=16 Identities=44% Similarity=0.835 Sum_probs=12.9
Q ss_pred ccccCCcccccccccc
Q 034393 77 VCAMCGKQVLDTKFYK 92 (96)
Q Consensus 77 iCamCGKki~dt~~y~ 92 (96)
.|+.|++.+.+...|-
T Consensus 2 ~C~~C~~~f~~~~F~e 17 (35)
T d1g47a2 2 VCAQCFQQFPEGLFYE 17 (35)
T ss_dssp CCTTTCCCCGGGCSEE
T ss_pred CCCCCcCCCCCCCeEE
Confidence 5899999998877663
No 21
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.57 E-value=10 Score=20.75 Aligned_cols=19 Identities=32% Similarity=0.947 Sum_probs=14.1
Q ss_pred cccchhhhcCCCCCccccc
Q 034393 53 KCIICKQQVHQDAKYCHTC 71 (96)
Q Consensus 53 ~C~~CK~~v~q~~~YCq~C 71 (96)
+|..|.+.-....-||+.|
T Consensus 6 kC~~C~~~N~Pl~ryC~rC 24 (41)
T d2cr8a1 6 QCTECKKFNSPSKRYCFRC 24 (41)
T ss_dssp ECSSSCCEECSSCCBCTTT
T ss_pred ecCcccccCCcchhHHHHH
Confidence 6888855444459999998
No 22
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.75 E-value=12 Score=20.80 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=9.1
Q ss_pred CccccCCccccc
Q 034393 76 GVCAMCGKQVLD 87 (96)
Q Consensus 76 giCamCGKki~d 87 (96)
-+|+.|++.|.+
T Consensus 19 P~C~~C~~pI~g 30 (45)
T d2dara2 19 PMCAHCNQVIRG 30 (45)
T ss_dssp CBBSSSCCBCCS
T ss_pred eeccccCCcccC
Confidence 478888888864
No 23
>d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=24.93 E-value=13 Score=20.61 Aligned_cols=29 Identities=31% Similarity=0.834 Sum_probs=19.9
Q ss_pred ccCCCCCCC--ccccchhhhcCC-----C-CCccccc
Q 034393 43 KKRWTPYGN--TKCIICKQQVHQ-----D-AKYCHTC 71 (96)
Q Consensus 43 k~r~~py~~--~~C~~CK~~v~q-----~-~~YCq~C 71 (96)
.++|.-|+. ..|..|...|.. - ..||..|
T Consensus 15 q~~~~VY~r~g~~C~~C~~~I~~~~~~~R~t~~Cp~C 51 (56)
T d1ee8a3 15 QTRHAVYGREGLPCPACGRPVERRVVAGRGTHFCPTC 51 (56)
T ss_dssp GGGCSSTTCTTSBCTTTCCBCEEEESSSCEEEECTTT
T ss_pred cceEEEecCCCcccccCCceEEEEEECCCcCEECcCc
Confidence 557777875 578888876632 1 5778777
No 24
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.82 E-value=9.8 Score=19.75 Aligned_cols=12 Identities=17% Similarity=0.728 Sum_probs=10.1
Q ss_pred CccccCCccccc
Q 034393 76 GVCAMCGKQVLD 87 (96)
Q Consensus 76 giCamCGKki~d 87 (96)
.+|+-|.++|+|
T Consensus 6 p~C~~C~~PI~~ 17 (31)
T d1u5sb1 6 PICGACRRPIEG 17 (31)
T ss_dssp CEETTTTEECCS
T ss_pred cchhhcCCchhh
Confidence 479999999987
No 25
>d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli [TaxId: 562]}
Probab=22.27 E-value=19 Score=22.58 Aligned_cols=36 Identities=28% Similarity=0.598 Sum_probs=22.6
Q ss_pred cccCCccCCCCCccccC--C-Cceecccccccc-ccCCCC
Q 034393 13 VIVPDKWKEGASNTTEA--G-GRKVNENKLLSK-KKRWTP 48 (96)
Q Consensus 13 latPd~~k~g~~~~~~~--g-~r~i~eNKlLs~-k~r~~p 48 (96)
-+.||-||+|..-..+| . +.-+--+.+|.+ -.+|.|
T Consensus 68 GilPdlF~eg~~VVveG~~~~~~~f~A~~vlaKh~e~Y~p 107 (114)
T d1sr3a_ 68 GILPDLFREGQGVVVQGELEKGNHILAKEVLAKHDENYTP 107 (114)
T ss_dssp SCCCTTCCTTSEEEEEEEECSSSEEEESSCBCCSCCCCCC
T ss_pred CCCChhhcCCCeEEEEEEECCCCEEEEEEEEecCCCCCCC
Confidence 36799999987655444 1 223456677766 556765
No 26
>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.79 E-value=12 Score=20.07 Aligned_cols=29 Identities=24% Similarity=0.753 Sum_probs=19.0
Q ss_pred ccCCCCCCC--ccccchhhhcCC---C---CCccccc
Q 034393 43 KKRWTPYGN--TKCIICKQQVHQ---D---AKYCHTC 71 (96)
Q Consensus 43 k~r~~py~~--~~C~~CK~~v~q---~---~~YCq~C 71 (96)
.++|.-|+. ..|..|.+.|.. . ..||..|
T Consensus 8 q~~~~VYgR~g~~C~~C~~~I~~~~~~gR~t~~Cp~C 44 (46)
T d1r2za3 8 QHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRC 44 (46)
T ss_dssp GGGCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred cceeEEeCCCCCccCCCCCeEEEEEECCCcCEEChhh
Confidence 456777875 578888876632 1 5677666
No 27
>d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=21.77 E-value=8.9 Score=20.77 Aligned_cols=29 Identities=24% Similarity=0.820 Sum_probs=19.2
Q ss_pred ccCCCCCCC--ccccchhhhcCC-----C-CCccccc
Q 034393 43 KKRWTPYGN--TKCIICKQQVHQ-----D-AKYCHTC 71 (96)
Q Consensus 43 k~r~~py~~--~~C~~CK~~v~q-----~-~~YCq~C 71 (96)
.++|.-|+. ..|..|...|.. - ..||..|
T Consensus 8 q~~l~VYgR~g~~C~~C~~~I~~~~~~gR~t~~Cp~C 44 (47)
T d1tdza3 8 QNELQVYGKTGEKCSRCGAEIQKIKVAGRGTHFCPVC 44 (47)
T ss_dssp GGGCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred cceEEEeCCCCCCcCCCCcEEEEEEECCcccEECccc
Confidence 456677775 578888776532 1 6777776
No 28
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.72 E-value=19 Score=19.75 Aligned_cols=35 Identities=26% Similarity=0.647 Sum_probs=24.2
Q ss_pred cccchhhhc-----------CCCCCccccccc-----ccCccccCCccccc
Q 034393 53 KCIICKQQV-----------HQDAKYCHTCAY-----SKGVCAMCGKQVLD 87 (96)
Q Consensus 53 ~C~~CK~~v-----------~q~~~YCq~CAY-----kkgiCamCGKki~d 87 (96)
.|.||...+ .=+|.||..|.. ....|++|-+.|..
T Consensus 5 ~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~ 55 (65)
T d1g25a_ 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence 688886532 124889999973 23479999988754
No 29
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=21.56 E-value=10 Score=21.65 Aligned_cols=11 Identities=55% Similarity=1.168 Sum_probs=7.5
Q ss_pred ccccCccccCC
Q 034393 72 AYSKGVCAMCG 82 (96)
Q Consensus 72 AYkkgiCamCG 82 (96)
||+|-+|..||
T Consensus 1 a~kky~C~~Cg 11 (56)
T d1s24a_ 1 AYLKWICITCG 11 (56)
T ss_dssp CCCEEEETTTT
T ss_pred CCccEECCCCC
Confidence 56666777776
No 30
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.00 E-value=35 Score=18.93 Aligned_cols=34 Identities=21% Similarity=0.551 Sum_probs=26.1
Q ss_pred ccccchhhhcCCC----CCccc--ccccccCccccCCccccc
Q 034393 52 TKCIICKQQVHQD----AKYCH--TCAYSKGVCAMCGKQVLD 87 (96)
Q Consensus 52 ~~C~~CK~~v~q~----~~YCq--~CAYkkgiCamCGKki~d 87 (96)
..|..|+..|+.. +-.|- .|.+. .|..||+.+.+
T Consensus 7 K~CP~C~~~ieK~~GCnhM~C~~~~C~~~--fCw~C~~~~~~ 46 (60)
T d1wd2a_ 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAE--FCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSC--CSSSSCSCSGG
T ss_pred cCCCCCCCeEEECCCCCCeEeCCCCCCCe--EECCCCCcccc
Confidence 4899999999764 55784 47554 99999998765
No 31
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.78 E-value=15 Score=18.79 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=8.5
Q ss_pred CccccCCcccc
Q 034393 76 GVCAMCGKQVL 86 (96)
Q Consensus 76 giCamCGKki~ 86 (96)
..|+.|||.+-
T Consensus 3 ~~CprC~K~VY 13 (30)
T d2cu8a1 3 SKCPKCDKTVY 13 (30)
T ss_dssp CBCTTTCCBCC
T ss_pred CcCCCCCCcee
Confidence 36889998874
No 32
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.70 E-value=10 Score=19.42 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=9.8
Q ss_pred ccccCCccccccc
Q 034393 77 VCAMCGKQVLDTK 89 (96)
Q Consensus 77 iCamCGKki~dt~ 89 (96)
-|.-|||++....
T Consensus 4 tc~hcgkqlks~~ 16 (30)
T d2ctda2 4 TCHHCGKQLRSLA 16 (30)
T ss_dssp CCSSSCCCCSSHH
T ss_pred echhHHHHHhhcc
Confidence 4889999987543
Done!