BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034394
         (96 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|E1C3P4|CBPC1_CHICK Cytosolic carboxypeptidase 1 OS=Gallus gallus GN=AGTPBP1 PE=3 SV=1
          Length = 1224

 Score = 30.8 bits (68), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 15/74 (20%)

Query: 23  VRGGANLASWVVAGTLAYYLWVKPSQDLKREQEERAALAALDPNRYVEKRKPIPDPQETG 82
           V  G   ASWV+ GTL Y +   PS    RE              Y+ K  P+ +P   G
Sbjct: 917 VHPGETNASWVMKGTLEYLMSSNPSAQSLRES-------------YIFKIIPMLNPD--G 961

Query: 83  LIYGNKNRSRKSEE 96
           +I GN   S   E+
Sbjct: 962 VINGNHRCSLSGED 975


>sp|Q8ND30|LIPB2_HUMAN Liprin-beta-2 OS=Homo sapiens GN=PPFIBP2 PE=1 SV=3
          Length = 876

 Score = 30.8 bits (68), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 5   WRRTIGNLRSFVGNSMG-GVRGGANLASWVVAG-TLAYYLWVKPSQDLKREQEERAALAA 62
           W R++ +L  +  N  G GV GG  +      G TLA  L + P + L R        A 
Sbjct: 726 WLRSV-DLAEYAPNLRGSGVHGGLIILEPRFTGDTLAMLLNIPPQKTLLRRHLTTKFNAL 784

Query: 63  LDPNRYVEKRKPIPDPQETGLIYGNKNRSRK 93
           + P    EKR+ +  P  T L    K R RK
Sbjct: 785 IGPEAEQEKREKMASPAYTPLTTTAKVRPRK 815


>sp|O14255|GCS1_SCHPO Probable mannosyl-oligosaccharide glucosidase
          OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
          GN=SPAC6G10.09 PE=3 SV=1
          Length = 808

 Score = 30.4 bits (67), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 32 WVVAGTLAYYL---WVKPS-QDLKREQEERAALAALDPNRYVEKRKPIPDPQETGLIYGN 87
          W++ G L++ L    V  S +D+++   +        PN YV  R  IPD   TGL++ N
Sbjct: 12 WILFGLLSFLLNCVLVSCSVEDIEKAANDSFLWGPYRPNLYVGIRPKIPDSLMTGLMWSN 71


>sp|O35711|LIPB2_MOUSE Liprin-beta-2 OS=Mus musculus GN=Ppfibp2 PE=1 SV=3
          Length = 882

 Score = 30.0 bits (66), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 5   WRRTIGNLRSFVGNSMG-GVRGGANLASWVVAG-TLAYYLWVKPSQDLKREQEERAALAA 62
           W R++ +L  +  N  G GV GG  +      G TLA  L + P + L R        A 
Sbjct: 732 WLRSV-DLAEYAPNLRGSGVHGGLIILEPRFTGDTLAMLLNIPPQKTLLRRHLTTKFNAL 790

Query: 63  LDPNRYVEKRKPIPDPQETGLIYGNKNRSRK 93
           + P    EKR  +  P  T L    K R RK
Sbjct: 791 IGPEAEQEKRDKMASPAYTPLTTTAKVRPRK 821


>sp|Q9UPW5|CBPC1_HUMAN Cytosolic carboxypeptidase 1 OS=Homo sapiens GN=AGTPBP1 PE=1 SV=3
          Length = 1226

 Score = 29.3 bits (64), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 15/74 (20%)

Query: 23  VRGGANLASWVVAGTLAYYLWVKPSQDLKREQEERAALAALDPNRYVEKRKPIPDPQETG 82
           V  G   ASWV+ GTL Y +   P+    RE              Y+ K  P+ +P   G
Sbjct: 919 VHPGETNASWVMKGTLEYLMSNNPTAQSLRES-------------YIFKIVPMLNPD--G 963

Query: 83  LIYGNKNRSRKSEE 96
           +I GN   S   E+
Sbjct: 964 VINGNHRCSLSGED 977


>sp|Q641K1|CBPC1_MOUSE Cytosolic carboxypeptidase 1 OS=Mus musculus GN=Agtpbp1 PE=1 SV=2
          Length = 1218

 Score = 29.3 bits (64), Expect = 7.5,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 15/74 (20%)

Query: 23  VRGGANLASWVVAGTLAYYLWVKPSQDLKREQEERAALAALDPNRYVEKRKPIPDPQETG 82
           V  G   ASWV+ GTL Y +   P+    RE              Y+ K  P+ +P   G
Sbjct: 911 VHPGETNASWVMKGTLEYLMSNSPTAQSLRES-------------YIFKIVPMLNPD--G 955

Query: 83  LIYGNKNRSRKSEE 96
           +I GN   S   E+
Sbjct: 956 VINGNHRCSLSGED 969


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.131    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,288,584
Number of Sequences: 539616
Number of extensions: 1380763
Number of successful extensions: 2886
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2884
Number of HSP's gapped (non-prelim): 8
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)