Query 034395
Match_columns 96
No_of_seqs 104 out of 112
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 22:28:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3brv_A Inhibitor of nuclear fa 5.6 1.6E+02 0.0056 17.3 0.4 9 83-91 40-48 (48)
2 1o7b_T Tumor necrosis factor-i 5.4 2.3E+02 0.0077 18.5 1.1 15 78-92 42-56 (98)
3 1b12_A Signal peptidase I; ser 4.9 1.1E+02 0.0037 22.0 -0.8 14 78-91 202-215 (248)
4 3l42_A Peregrin; transcription 3.8 1.5E+02 0.0052 20.5 -0.7 13 82-94 74-86 (130)
5 2pq4_B Periplasmic nitrate red 3.3 6.9E+02 0.023 13.3 1.8 12 7-18 5-16 (35)
6 2lti_A Astexin1; sidechain-TO- 2.7 5.3E+02 0.018 13.4 0.9 8 88-95 2-9 (26)
7 3pfs_A Bromodomain and PHD fin 2.5 2.6E+02 0.0088 20.0 -0.7 13 82-94 105-117 (158)
8 1p65_A Nucleocapsid protein; v 2.5 2.9E+02 0.0099 17.7 -0.4 23 54-76 47-69 (73)
9 2jcq_A CD44 antigen; sugar-bin 2.5 5.6E+02 0.019 18.1 1.1 14 78-92 54-67 (154)
10 1n0q_A 3ANK, 3 ankyrin repeats 2.4 4.5E+02 0.015 14.4 0.4 12 61-72 35-46 (93)
No 1
>3brv_A Inhibitor of nuclear factor kappa-B kinase subuni; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Synthetic} PDB: 3brt_A
Probab=5.57 E-value=1.6e+02 Score=17.26 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=5.2
Q ss_pred ccccccCCC
Q 034395 83 CGYGWLPEG 91 (96)
Q Consensus 83 ~s~~~Lsqg 91 (96)
-.|.||.+|
T Consensus 40 lDwSWL~~~ 48 (48)
T 3brv_A 40 LDWSWLQTE 48 (48)
T ss_dssp SCCGGGC--
T ss_pred hhhhhhccC
Confidence 368888764
No 2
>1o7b_T Tumor necrosis factor-inducible protein TSG-6; hyaluronan-binding domain, carbohydrate-binding domain, LINK module, cell adhesion, glycoprotein; NMR {Homo sapiens} SCOP: d.169.1.4 PDB: 1o7c_T 2pf5_A*
Probab=5.45 E-value=2.3e+02 Score=18.51 Aligned_cols=15 Identities=27% Similarity=1.010 Sum_probs=12.6
Q ss_pred hccccccccccCCCC
Q 034395 78 LSISQCGYGWLPEGQ 92 (96)
Q Consensus 78 Ls~~s~s~~~Lsqg~ 92 (96)
.+.+...+|||++|.
T Consensus 42 ~G~~~C~~GWL~Dgs 56 (98)
T 1o7b_T 42 IGFHVCAAGWMAKGR 56 (98)
T ss_dssp TTCCCSSCEEBTTTB
T ss_pred cCccccccccccCCe
Confidence 567888999999885
No 3
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=4.94 E-value=1.1e+02 Score=22.01 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=9.7
Q ss_pred hccccccccccCCC
Q 034395 78 LSISQCGYGWLPEG 91 (96)
Q Consensus 78 Ls~~s~s~~~Lsqg 91 (96)
-|.|||.||.++++
T Consensus 202 nS~DSR~~G~Vp~~ 215 (248)
T 1b12_A 202 NSADSRYWGFVPEA 215 (248)
T ss_dssp SCCCHHHHCCEEGG
T ss_pred ccCCCCcccccCHH
Confidence 35677778777764
No 4
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=3.78 E-value=1.5e+02 Score=20.53 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=10.2
Q ss_pred cccccccCCCCCC
Q 034395 82 QCGYGWLPEGQNK 94 (96)
Q Consensus 82 s~s~~~Lsqg~~~ 94 (96)
.++|.||.++.-+
T Consensus 74 ~~t~aWv~~~~i~ 86 (130)
T 3l42_A 74 KRTWQWLPRTKLV 86 (130)
T ss_dssp TCCEEEEEGGGEE
T ss_pred CCceEeeccccee
Confidence 5899999987644
No 5
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=3.28 E-value=6.9e+02 Score=13.28 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=8.8
Q ss_pred HHHHHhhhhhhH
Q 034395 7 ARSIFRSNSARN 18 (96)
Q Consensus 7 aRS~~RSaasr~ 18 (96)
+|.|+...+...
T Consensus 5 RR~FLK~~aaa~ 16 (35)
T 2pq4_B 5 RRSFMKANAVAA 16 (35)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 688999776544
No 6
>2lti_A Astexin1; sidechain-TO-backbone LINK, lasso peptide, antimic protein; NMR {Asticcacaulis excentricus}
Probab=2.74 E-value=5.3e+02 Score=13.39 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=5.0
Q ss_pred cCCCCCCC
Q 034395 88 LPEGQNKT 95 (96)
Q Consensus 88 Lsqg~~~~ 95 (96)
||||...|
T Consensus 2 lsqgvepd 9 (26)
T 2lti_A 2 LSQGVEPD 9 (26)
T ss_dssp CSSSSSCC
T ss_pred cccccCCC
Confidence 67776544
No 7
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=2.52 E-value=2.6e+02 Score=19.97 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=9.7
Q ss_pred cccccccCCCCCC
Q 034395 82 QCGYGWLPEGQNK 94 (96)
Q Consensus 82 s~s~~~Lsqg~~~ 94 (96)
.+.|+|++++.-+
T Consensus 105 ~~t~aWV~~~~L~ 117 (158)
T 3pfs_A 105 KRTWQWLPRDKVL 117 (158)
T ss_dssp TCCEEEEEGGGEE
T ss_pred CCceEeeccccEe
Confidence 4799999887543
No 8
>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductive svirus} SCOP: d.254.1.1
Probab=2.50 E-value=2.9e+02 Score=17.71 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=15.6
Q ss_pred hhhhhhhhccchhhHHHHHHhhh
Q 034395 54 EMSFCVESMLPYHTATASALSTS 76 (96)
Q Consensus 54 el~~cveSllPlHsAvAsArltS 76 (96)
.+++-||-|||-|-.|=.-|.|+
T Consensus 47 ~isf~VeFmLP~~hTVRLIrvta 69 (73)
T 1p65_A 47 RISYTVEFSLPTHHTVRLIRVTA 69 (73)
T ss_dssp CEEEEEEECCCHHHHHHHHHHC-
T ss_pred ceeEEEEEecccceEEEEEEecc
Confidence 34567999999988775555443
No 9
>2jcq_A CD44 antigen; sugar-binding protein, hyauronan, LINK-domain, proteoglycan, polymorphism, blood group antigen, alternative splicing, lectin; HET: NAG GCU 5AX GOL; 1.25A {Mus musculus} PDB: 2jcr_A* 2jcp_A 2i83_A 1poz_A 1uuh_A
Probab=2.49 E-value=5.6e+02 Score=18.12 Aligned_cols=14 Identities=36% Similarity=0.992 Sum_probs=11.2
Q ss_pred hccccccccccCCCC
Q 034395 78 LSISQCGYGWLPEGQ 92 (96)
Q Consensus 78 Ls~~s~s~~~Lsqg~ 92 (96)
.+.+...+||| +|.
T Consensus 54 ~Gld~C~~GWL-Dgs 67 (154)
T 2jcq_A 54 KGFETCRYGFI-EGN 67 (154)
T ss_dssp TTCCCSSCEEC-SSS
T ss_pred cCcccccCCcc-cCe
Confidence 47788899999 774
No 10
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=2.41 E-value=4.5e+02 Score=14.36 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=8.8
Q ss_pred hccchhhHHHHH
Q 034395 61 SMLPYHTATASA 72 (96)
Q Consensus 61 SllPlHsAvAsA 72 (96)
..-|||.|+-..
T Consensus 35 g~t~L~~A~~~~ 46 (93)
T 1n0q_A 35 GRTPLHLAARNG 46 (93)
T ss_dssp SCCHHHHHHHTT
T ss_pred CCCHHHHHHHcC
Confidence 467999987543
Done!