BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034396
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RI8|A Chain A, Xylanase C From Aspergillus Kawachii D37n Mutant
Length = 185
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 21 RDHRRSLPDIDYLDTHGTTS---SDGMSS-FLRHGGWTWGGGNLSSMSASVSTLGDSGWL 76
+++ +L D Y ++ GT S DG+SS F+ GWT G N + SA S G S +L
Sbjct: 9 QNYNGNLGDFTYDESAGTFSMYWEDGVSSNFVVGLGWTTGSSNAITYSAEYSASGSSSYL 68
>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6)
Length = 512
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 68 STLGDSGWLIHVQSILAGSAWIAAQIALE 96
S L SGWL H+++++ + ++A I +E
Sbjct: 300 SGLESSGWLRHIKAVMDAAVFLAKAITVE 328
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 2 AWVLITDRGLKMMSNSLNSRDHRRSLPDIDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLS 61
AW ++ RG +++ N+ H +P D+L + S S+ ++G W+ G +
Sbjct: 179 AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSY-QNGAWSAAAGK-A 236
Query: 62 SMSASVSTLGDS 73
M + LG S
Sbjct: 237 GMEENCMLLGHS 248
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 2 AWVLITDRGLKMMSNSLNSRDHRRSLPDIDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLS 61
AW ++ RG +++ N+ H +P D+L + S S+ ++G W+ G +
Sbjct: 179 AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSY-QNGAWSAAAGKV- 236
Query: 62 SMSASVSTLGDS 73
M + LG S
Sbjct: 237 GMEENCMLLGHS 248
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 29 DIDYLDTHGTTSSDGMS 45
DIDY DTH +SSD S
Sbjct: 171 DIDYFDTHRASSSDEAS 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,827,365
Number of Sequences: 62578
Number of extensions: 94714
Number of successful extensions: 296
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 18
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)