BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034396
         (96 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6TEL0|MTMR8_DANRE Myotubularin-related protein 8 OS=Danio rerio GN=mtmr8 PE=2 SV=1
          Length = 632

 Score = 30.0 bits (66), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 62  SMSASVSTLGDSGWLIHVQSILAGSAWIAAQIALE 96
           SMS  ++ L +SGWL H++S++    ++A  +  E
Sbjct: 296 SMSDYLTGLENSGWLRHIKSVMDAGVFLAKAVCEE 330


>sp|Q4L320|UXAC_STAHJ Uronate isomerase OS=Staphylococcus haemolyticus (strain JCSC1435)
           GN=uxaC PE=3 SV=1
          Length = 467

 Score = 28.9 bits (63), Expect = 9.8,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 32  YLDTHGTTSSD-----GMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGS 86
           Y D  G+T ++     G+ S ++HG   W       M   +S+L D G L+H   +L  S
Sbjct: 353 YNDIVGSTIANFQTEPGIKSKVQHGAGWWFNDTKRGMLRQMSSLADQGLLMHFVGMLTDS 412


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.129    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,408,936
Number of Sequences: 539616
Number of extensions: 1124785
Number of successful extensions: 3487
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3467
Number of HSP's gapped (non-prelim): 23
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)