Query 034396
Match_columns 96
No_of_seqs 98 out of 100
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 13:00:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1089 Myotubularin-related p 99.7 3.1E-18 6.7E-23 146.6 4.4 64 10-96 279-343 (573)
2 KOG4471 Phosphatidylinositol 3 99.7 1.4E-17 3.1E-22 144.5 4.8 61 12-96 312-373 (717)
3 PF06602 Myotub-related: Myotu 99.2 1.7E-11 3.7E-16 98.3 4.1 64 10-95 165-229 (353)
4 KOG1090 Predicted dual-specifi 77.2 2.7 6E-05 40.7 3.6 57 19-94 1216-1273(1732)
5 KOG2971 RNA-binding protein re 53.3 6.9 0.00015 32.4 1.1 24 2-25 118-141 (299)
6 TIGR02836 spore_IV_A stage IV 24.1 84 0.0018 27.9 3.1 27 61-89 243-269 (492)
7 PF03799 FtsQ: Cell division p 24.0 45 0.00098 21.1 1.1 30 2-34 71-101 (117)
8 COG5360 Uncharacterized protei 22.6 86 0.0019 28.1 2.9 33 61-93 87-120 (566)
9 cd01232 PH_TRIO Trio pleckstri 21.6 58 0.0013 22.8 1.4 17 69-85 98-114 (114)
10 PF10158 LOH1CR12: Tumour supp 21.0 1.1E+02 0.0024 22.1 2.8 31 64-94 18-48 (131)
11 PF02559 CarD_CdnL_TRCF: CarD- 20.9 2.2E+02 0.0048 18.3 4.0 28 66-93 66-93 (98)
12 PF07684 NODP: NOTCH protein; 20.1 26 0.00055 22.5 -0.6 11 9-19 3-13 (63)
No 1
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=99.72 E-value=3.1e-18 Score=146.61 Aligned_cols=64 Identities=30% Similarity=0.346 Sum_probs=58.9
Q ss_pred ccccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHH
Q 034396 10 GLKMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAW 88 (96)
Q Consensus 10 ~~K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~ 88 (96)
=++.|+||+||||||+||+| +|+|.. +.++|+.|++.||+||||+||++||++|++
T Consensus 279 ~~~~f~~i~nIh~v~~s~~kl~e~c~~-----------------------~~~~~~~~ls~LE~SgWL~~i~~~L~~a~~ 335 (573)
T KOG1089|consen 279 WKFLFLGIENIHVVRSSLQKLLEVCNN-----------------------FLPTMDKWLSLLESSGWLKHIRAILKAAAE 335 (573)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHhc-----------------------cCccHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence 47899999999999999999 999963 348999999999999999999999999999
Q ss_pred HHHHhhhC
Q 034396 89 IAAQIALE 96 (96)
Q Consensus 89 IA~~V~~e 96 (96)
||++|..|
T Consensus 336 ia~~l~~~ 343 (573)
T KOG1089|consen 336 IAKCLSSE 343 (573)
T ss_pred HHHHHHhC
Confidence 99999754
No 2
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.4e-17 Score=144.55 Aligned_cols=61 Identities=28% Similarity=0.319 Sum_probs=55.6
Q ss_pred ccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHHHH
Q 034396 12 KMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90 (96)
Q Consensus 12 K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~IA 90 (96)
-+|+||+||||||+||+| .+.|- +.+.++.|++.|++++||.||+.||.||++||
T Consensus 312 i~Fl~i~NIH~mR~s~~~~k~~~~------------------------~~~d~s~wlS~Le~T~WL~Hi~~lLaga~~Ia 367 (717)
T KOG4471|consen 312 IVFLGIHNIHVMRESLRKLKEICY------------------------PSPDESNWLSALESTHWLEHISSLLAGAVRIA 367 (717)
T ss_pred EEEeecchhHHHHHHHHhHHHhhc------------------------CCCCchhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 479999999999999999 77773 34788999999999999999999999999999
Q ss_pred HHhhhC
Q 034396 91 AQIALE 96 (96)
Q Consensus 91 ~~V~~e 96 (96)
..|+.|
T Consensus 368 ~kVe~~ 373 (717)
T KOG4471|consen 368 DKVESE 373 (717)
T ss_pred HHHhcC
Confidence 999865
No 3
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=99.18 E-value=1.7e-11 Score=98.26 Aligned_cols=64 Identities=28% Similarity=0.314 Sum_probs=48.7
Q ss_pred ccccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHH
Q 034396 10 GLKMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAW 88 (96)
Q Consensus 10 ~~K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~ 88 (96)
-+.+|++|+|||+||+|+.| +++|.. .+..+...|++.|++|+||.||+.+|++|..
T Consensus 165 ~~i~fl~i~nih~vr~s~~kl~~~~~~----------------------~~~~~~~~~~~~le~s~Wl~~v~~~L~~a~~ 222 (353)
T PF06602_consen 165 CEIIFLNIPNIHSVRDSFQKLRELCSN----------------------TNSDNDDSWLSSLESSNWLDHVRSILSGASR 222 (353)
T ss_dssp EEEEE-----HHHHHHHHHHHHHHH-S----------------------SSS--HHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred ceEEeeecCcHHHHHHHHHHHHHHhcc----------------------cccCCchhhhhccccCChHHHHHHHHHHHHH
Confidence 35689999999999999999 999911 0125668899999999999999999999999
Q ss_pred HHHHhhh
Q 034396 89 IAAQIAL 95 (96)
Q Consensus 89 IA~~V~~ 95 (96)
||+.+..
T Consensus 223 i~~~l~~ 229 (353)
T PF06602_consen 223 IADLLHD 229 (353)
T ss_dssp HHHHHHT
T ss_pred HHHHhhc
Confidence 9999864
No 4
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=77.23 E-value=2.7 Score=40.74 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=44.1
Q ss_pred chHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHHHHHHhh
Q 034396 19 NSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIAAQIA 94 (96)
Q Consensus 19 NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~IA~~V~ 94 (96)
.+.-.|.||+| +.+|-- | - .-+.++-..|+..|+.|.||..|.+.|.=+..|+.-+.
T Consensus 1216 e~rq~r~sfkkl~kaC~p-~---------------~---~~~e~~~~SFl~s~e~S~WlqqIskllqlS~~VV~Lld 1273 (1732)
T KOG1090|consen 1216 EERQVRASFKKLLKACVP-G---------------C---PAAEPSPASFLESLEDSEWLQQISKLLQLSVLVVELLD 1273 (1732)
T ss_pred hHHHHHHHHHHHHHHhCC-C---------------C---ccCCCCHHHHHHHHhhcchHHHHHHHHhhhhhhhhhhh
Confidence 46678999999 999841 0 0 11345667899999999999999999998888876543
No 5
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=53.32 E-value=6.9 Score=32.40 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=22.1
Q ss_pred eeEEEeccccccccCCcchHHHhh
Q 034396 2 AWVLITDRGLKMMSNSLNSRDHRR 25 (96)
Q Consensus 2 ~~~~~~~~~~K~flgI~NIHVMRd 25 (96)
.|.-+++.|--+-+=++|+|.|+|
T Consensus 118 lWm~~~p~GpSvkFlv~n~hTM~E 141 (299)
T KOG2971|consen 118 LWMSNSPNGPSVKFLVHNVHTMAE 141 (299)
T ss_pred EEEecCCCCCceEEehhhhhhHHH
Confidence 488899999999999999999998
No 6
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=24.07 E-value=84 Score=27.88 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=19.1
Q ss_pred CCcchhhhhhcccchHHHHHHHHhHHHHH
Q 034396 61 SSMSASVSTLGDSGWLIHVQSILAGSAWI 89 (96)
Q Consensus 61 ~sm~~~~s~L~sSgWLkHI~~ILdga~~I 89 (96)
-.+|.|+..|+.++|||. ++++...-+
T Consensus 243 ~~~P~Wve~L~~~Hwlk~--~~~~~i~~~ 269 (492)
T TIGR02836 243 IDLPSWVEVLDENHWLKE--NFQSSVKET 269 (492)
T ss_pred eeCchHHHhcCCCchHHH--HHHHHHHHH
Confidence 367899999999999983 344443333
No 7
>PF03799 FtsQ: Cell division protein FtsQ; InterPro: IPR005548 FtsQ is one of several cell division proteins. FtsQ interacts with other Fts proteins, reviewed in []. The precise function of FtsQ is unknown.; PDB: 2VH1_B 2VH2_B 2ALJ_A 1YR1_A.
Probab=24.02 E-value=45 Score=21.09 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=22.1
Q ss_pred eeEEEeccccccccCCcchHHHhhhccc-hhhhc
Q 034396 2 AWVLITDRGLKMMSNSLNSRDHRRSLPD-IDYLD 34 (96)
Q Consensus 2 ~~~~~~~~~~K~flgI~NIHVMRdSL~K-ieal~ 34 (96)
.|.+.++.|..+.+|.++ +-+-|++ ..++.
T Consensus 71 ~~~l~l~dg~~V~lg~~~---~~~kl~~~~~i~~ 101 (117)
T PF03799_consen 71 SWTLYLDDGVEVKLGRSD---LAEKLQRLVKILP 101 (117)
T ss_dssp CEEEE-SSS-EEEEESST---HHHHHHHHHHHHH
T ss_pred eEEEEECCCcEEEEcCcC---HHHHHHHHHHHHH
Confidence 488999999999999997 6677777 55553
No 8
>COG5360 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.58 E-value=86 Score=28.14 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=24.4
Q ss_pred CCcchhhhhhcccchHHHHHHHH-hHHHHHHHHh
Q 034396 61 SSMSASVSTLGDSGWLIHVQSIL-AGSAWIAAQI 93 (96)
Q Consensus 61 ~sm~~~~s~L~sSgWLkHI~~IL-dga~~IA~~V 93 (96)
+....|...|..-|||+|++++= +-++-=|+++
T Consensus 87 ~Ps~~f~~~Lh~F~WLrhlra~~~e~aa~rar~l 120 (566)
T COG5360 87 SPSHEFAARLHGFGWLRHLRAAGSELAAARARRL 120 (566)
T ss_pred CCCHHHHHHHhhccchHhhhhcCChHHHHHHHHH
Confidence 34467889999999999999987 4444445544
No 9
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.63 E-value=58 Score=22.78 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=13.0
Q ss_pred hhcccchHHHHHHHHhH
Q 034396 69 TLGDSGWLIHVQSILAG 85 (96)
Q Consensus 69 ~L~sSgWLkHI~~ILdg 85 (96)
.=...-|++||+.||+.
T Consensus 98 ~e~K~~W~~~I~~il~~ 114 (114)
T cd01232 98 QETKQEWVKKIREILQE 114 (114)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 34456699999999973
No 10
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=20.96 E-value=1.1e+02 Score=22.07 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=19.8
Q ss_pred chhhhhhcccchHHHHHHHHhHHHHHHHHhh
Q 034396 64 SASVSTLGDSGWLIHVQSILAGSAWIAAQIA 94 (96)
Q Consensus 64 ~~~~s~L~sSgWLkHI~~ILdga~~IA~~V~ 94 (96)
+..+..|++-++++-....=+=-...|..|+
T Consensus 18 ~~~leklds~~~l~Lc~R~Q~HL~~cA~~Va 48 (131)
T PF10158_consen 18 PEVLEKLDSRPVLRLCSRYQEHLNQCAEAVA 48 (131)
T ss_pred hHHHHccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999866655544444444443
No 11
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=20.90 E-value=2.2e+02 Score=18.33 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=16.3
Q ss_pred hhhhhcccchHHHHHHHHhHHHHHHHHh
Q 034396 66 SVSTLGDSGWLIHVQSILAGSAWIAAQI 93 (96)
Q Consensus 66 ~~s~L~sSgWLkHI~~ILdga~~IA~~V 93 (96)
.++.|.+..|-+.-+.+=.+.+..|..|
T Consensus 66 ~l~~L~~~~W~~r~~~lk~~~~~~~~~l 93 (98)
T PF02559_consen 66 LLDKLGSIEWKKRKRKLKSGDIEEAAEL 93 (98)
T ss_dssp ----TT-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHHHHhccHHHHHHH
Confidence 3566777779777776667777766654
No 12
>PF07684 NODP: NOTCH protein; InterPro: IPR011656 NOTCH signalling plays a fundamental role during a great number of developmental processes in multicellular animals []. NOD and NODP represent a region present in many NOTCH proteins and NOTCH homologs in multiple species such as NOTCH2 and NOTCH3, LIN12, SC1 and TAN1. The role of the NOD and NODP domains remains to be elucidated.; GO: 0007219 Notch signaling pathway, 0007275 multicellular organismal development, 0030154 cell differentiation, 0016021 integral to membrane; PDB: 3ETO_A 3I08_D 3L95_X 2OO4_A.
Probab=20.09 E-value=26 Score=22.46 Aligned_cols=11 Identities=18% Similarity=-0.040 Sum_probs=8.6
Q ss_pred cccccccCCcc
Q 034396 9 RGLKMMSNSLN 19 (96)
Q Consensus 9 ~~~K~flgI~N 19 (96)
.|-.+||.|||
T Consensus 3 ~Gs~V~LeiDn 13 (63)
T PF07684_consen 3 IGSVVYLEIDN 13 (63)
T ss_dssp CEEEEEEEEE-
T ss_pred eeEEEEEEEEh
Confidence 58889999998
Done!