Query 034396
Match_columns 96
No_of_seqs 98 out of 100
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 22:30:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yf0_A Myotubularin-related pr 99.7 1.5E-17 5.1E-22 138.7 4.8 63 11-96 265-328 (512)
2 1zsq_A Myotubularin-related pr 99.6 3.4E-16 1.2E-20 130.8 4.8 63 10-96 277-340 (528)
3 1lw3_A Myotubularin-related pr 99.6 1.3E-15 4.3E-20 130.6 4.8 63 10-96 349-412 (657)
4 1y74_B MLIN-2/CASK, peripheral 20.1 1E+02 0.0034 17.3 2.9 20 77-96 31-50 (50)
5 2xu6_A MDV1 coiled coil; prote 12.7 30 0.001 22.4 -0.8 19 17-35 30-49 (72)
6 2vh1_A FTSQ, cell division pro 11.8 84 0.0029 21.7 1.2 19 2-20 142-160 (220)
7 3n00_B N-COR1, N-COR, nuclear 10.9 1.3E+02 0.0046 15.1 1.5 12 74-85 6-17 (21)
8 4a3a_A Amphiphysin; structural 9.3 1.8E+02 0.0063 21.1 2.4 23 72-94 61-83 (243)
9 3hs2_A PHD protein, prevent HO 9.0 1.2E+02 0.0043 17.2 1.1 11 4-14 26-36 (58)
10 3nft_A Translocator protein BI 8.9 1.3E+02 0.0044 24.1 1.5 24 5-29 214-237 (303)
No 1
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=138.69 Aligned_cols=63 Identities=25% Similarity=0.343 Sum_probs=56.2
Q ss_pred cccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHHH
Q 034396 11 LKMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWI 89 (96)
Q Consensus 11 ~K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~I 89 (96)
+++|+||+|||+||+||+| +|+|... .++++.|++.|++|+||+||+.||++|+.|
T Consensus 265 ~~~f~~i~nIh~~r~S~~kL~~~~~~~-----------------------~~~~~~~ls~Le~s~WL~~i~~iL~~a~~i 321 (512)
T 2yf0_A 265 RFQFVGIENIHVMRSSLQKLLEVNGTK-----------------------GLSVNDFYSGLESSGWLRHIKAVMDAAVFL 321 (512)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHSCC-----------------------SCCHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred eeEecChhhHHHHHHHHHHHHHHhcCC-----------------------CCCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 5689999999999999999 9999521 156789999999999999999999999999
Q ss_pred HHHhhhC
Q 034396 90 AAQIALE 96 (96)
Q Consensus 90 A~~V~~e 96 (96)
|++|+.|
T Consensus 322 a~~v~~~ 328 (512)
T 2yf0_A 322 AKAITVE 328 (512)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9999753
No 2
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=99.60 E-value=3.4e-16 Score=130.82 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=55.4
Q ss_pred ccccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHH
Q 034396 10 GLKMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAW 88 (96)
Q Consensus 10 ~~K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~ 88 (96)
-+++|+||+|||+||+||+| +|+|.. ..++..|++.|++|+||+||+.||++|+.
T Consensus 277 ~~~~f~~i~nIh~~r~S~~kL~~~~~~------------------------~~~~~~wls~Le~s~WL~~i~~iL~~a~~ 332 (528)
T 1zsq_A 277 AELVFLDIHNIHVMRESLRKLKEIVYP------------------------NIEETHWLSNLESTHWLEHIKLILAGALR 332 (528)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHHHSS------------------------CCCGGGHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEEcCCccHHHHHHHHHHHHHHhCC------------------------CCcchhHHHHhHhcccHHHHHHHHHHHHH
Confidence 36789999999999999999 999941 03456789999999999999999999999
Q ss_pred HHHHhhhC
Q 034396 89 IAAQIALE 96 (96)
Q Consensus 89 IA~~V~~e 96 (96)
||++|+.+
T Consensus 333 ia~~l~~~ 340 (528)
T 1zsq_A 333 IADKVESG 340 (528)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99999754
No 3
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=99.57 E-value=1.3e-15 Score=130.64 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=55.3
Q ss_pred ccccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHH
Q 034396 10 GLKMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAW 88 (96)
Q Consensus 10 ~~K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~ 88 (96)
-+++|+||+|||+||+||+| +|+|.. ..++..|++.|++|+||+||+.||++|+.
T Consensus 349 ~~~~fl~I~nIh~mr~S~~KL~~~c~p------------------------~~~~~~wls~Le~S~WL~hI~~iL~~A~~ 404 (657)
T 1lw3_A 349 AELVFLDIHNIHVMRESLRKLKEIVYP------------------------NIEETHWLSNLESTHWLEHIKLILAGALR 404 (657)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHHHSS------------------------CCCGGGHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEECCCccHHHHHHHHHHHHHHhCC------------------------CCcchhHHHHHHhcccHHHHHHHHHHHHH
Confidence 35789999999999999999 999941 03456789999999999999999999999
Q ss_pred HHHHhhhC
Q 034396 89 IAAQIALE 96 (96)
Q Consensus 89 IA~~V~~e 96 (96)
||++|+.+
T Consensus 405 ia~~l~~~ 412 (657)
T 1lw3_A 405 IADKVESG 412 (657)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99999754
No 4
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=20.08 E-value=1e+02 Score=17.34 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=17.2
Q ss_pred HHHHHHHhHHHHHHHHhhhC
Q 034396 77 IHVQSILAGSAWIAAQIALE 96 (96)
Q Consensus 77 kHI~~ILdga~~IA~~V~~e 96 (96)
-|+|++|.+--.||+++-.|
T Consensus 31 PHfqaLl~ahD~Va~~~y~~ 50 (50)
T 1y74_B 31 PHFMALLQTHDVVAHEVYSD 50 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999987543
No 5
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=12.71 E-value=30 Score=22.35 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.0
Q ss_pred CcchHHHhhhccc-hhhhcc
Q 034396 17 SLNSRDHRRSLPD-IDYLDT 35 (96)
Q Consensus 17 I~NIHVMRdSL~K-ieal~~ 35 (96)
|+|.|-||+.+-+ +..++.
T Consensus 30 i~nL~~mR~ivldRlA~lEq 49 (72)
T 2xu6_A 30 VENLRQKKEKLLGKIANIEQ 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 6899999999988 877763
No 6
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=11.78 E-value=84 Score=21.66 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=17.0
Q ss_pred eeEEEeccccccccCCcch
Q 034396 2 AWVLITDRGLKMMSNSLNS 20 (96)
Q Consensus 2 ~~~~~~~~~~K~flgI~NI 20 (96)
+|.|.++.|..+++|.+++
T Consensus 142 ~~~l~l~~g~~V~lG~~~~ 160 (220)
T 2vh1_A 142 SWQLTLNNDIKLNLGRGDT 160 (220)
T ss_dssp CEEEECSSSCEEEEESSCH
T ss_pred cEEEEECCCCEEEECCcCH
Confidence 5889999999999999874
No 7
>3n00_B N-COR1, N-COR, nuclear receptor corepressor 1; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=10.88 E-value=1.3e+02 Score=15.12 Aligned_cols=12 Identities=17% Similarity=0.183 Sum_probs=9.3
Q ss_pred chHHHHHHHHhH
Q 034396 74 GWLIHVQSILAG 85 (96)
Q Consensus 74 gWLkHI~~ILdg 85 (96)
-|.-||..||..
T Consensus 6 t~~~~i~eVitq 17 (21)
T 3n00_B 6 TLADHICQIITQ 17 (26)
T ss_pred ecHHHHHHHHHH
Confidence 388899988864
No 8
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=9.30 E-value=1.8e+02 Score=21.11 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=19.8
Q ss_pred ccchHHHHHHHHhHHHHHHHHhh
Q 034396 72 DSGWLIHVQSILAGSAWIAAQIA 94 (96)
Q Consensus 72 sSgWLkHI~~ILdga~~IA~~V~ 94 (96)
...|+.++++++....-++.++.
T Consensus 61 ~k~y~~ai~~~~~~q~~~ae~l~ 83 (243)
T 4a3a_A 61 LRGYLAAIKGMQEASMKLTESLH 83 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999888764
No 9
>3hs2_A PHD protein, prevent HOST death protein; intrinsic disorder, DOC, toxin-anti antitoxin; 2.20A {Enterobacteria phage P1}
Probab=9.02 E-value=1.2e+02 Score=17.16 Aligned_cols=11 Identities=45% Similarity=0.425 Sum_probs=8.1
Q ss_pred EEEeccccccc
Q 034396 4 VLITDRGLKMM 14 (96)
Q Consensus 4 ~~~~~~~~K~f 14 (96)
|+||.+|+..+
T Consensus 26 v~Itr~g~~~a 36 (58)
T 3hs2_A 26 VEITRRGREPA 36 (58)
T ss_dssp EEEECTTSCCE
T ss_pred EEEEECCCceE
Confidence 67898887543
No 10
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=8.91 E-value=1.3e+02 Score=24.08 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.3
Q ss_pred EEeccccccccCCcchHHHhhhccc
Q 034396 5 LITDRGLKMMSNSLNSRDHRRSLPD 29 (96)
Q Consensus 5 ~~~~~~~K~flgI~NIHVMRdSL~K 29 (96)
-+-+.| +|+.+...|.-|++||.+
T Consensus 214 ~V~~sG-~I~~Dl~~i~~m~~sL~g 237 (303)
T 3nft_A 214 SISDSG-VVTINPDKLIKMRDSLPP 237 (303)
T ss_dssp EECTTC-EEEECCHHHHHHHHTCCC
T ss_pred eeCCCc-eEEeCcHHHHHHHhcCCC
Confidence 456788 999999999999999986
Done!