Query 034400
Match_columns 95
No_of_seqs 107 out of 262
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 03:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_l 60S ribosomal protein L 100.0 2.7E-60 9.4E-65 327.5 0.7 93 1-93 1-93 (94)
2 4a18_A RPL37, ribosomal protei 100.0 1.5E-59 5.2E-64 323.8 3.5 92 1-92 1-93 (94)
3 2zkr_2 60S ribosomal protein L 100.0 2.5E-57 8.7E-62 313.9 4.4 93 1-93 1-93 (97)
4 3j21_e 50S ribosomal protein L 100.0 5E-38 1.7E-42 203.2 1.1 57 1-57 1-59 (62)
5 1vq8_1 50S ribosomal protein L 100.0 7.4E-38 2.5E-42 199.6 1.7 54 1-54 2-56 (57)
6 3j20_Y 30S ribosomal protein S 89.3 0.13 4.5E-06 30.7 1.2 27 14-40 17-46 (50)
7 3v2d_5 50S ribosomal protein L 87.1 0.21 7.1E-06 31.1 1.1 25 13-39 27-51 (60)
8 2k4x_A 30S ribosomal protein S 85.6 0.35 1.2E-05 29.3 1.6 27 14-40 16-45 (55)
9 3j21_g 50S ribosomal protein L 83.9 0.43 1.5E-05 29.0 1.4 23 17-40 15-37 (51)
10 2zjr_Z 50S ribosomal protein L 81.8 0.66 2.2E-05 28.7 1.7 25 13-39 27-51 (60)
11 2xzm_9 RPS31E; ribosome, trans 76.5 0.76 2.6E-05 33.9 0.9 26 15-40 112-140 (189)
12 2k2d_A Ring finger and CHY zin 71.4 1.7 5.9E-05 27.9 1.5 32 12-50 33-67 (79)
13 2apo_B Ribosome biogenesis pro 66.9 2.4 8.1E-05 26.5 1.4 21 17-40 7-27 (60)
14 3u5c_f 40S ribosomal protein S 62.5 3.5 0.00012 28.8 1.8 26 15-40 117-147 (152)
15 2kv1_A Methionine-R-sulfoxide 56.5 5.1 0.00018 28.2 1.8 27 15-41 19-45 (124)
16 1nui_A DNA primase/helicase; z 55.0 4.2 0.00014 29.3 1.2 26 15-40 13-42 (255)
17 2kao_A Methionine-R-sulfoxide 51.7 6.9 0.00024 27.5 1.8 29 13-41 17-45 (124)
18 2od1_A Protein CBFA2T1; zinc f 51.5 5.8 0.0002 23.4 1.2 32 4-39 1-32 (60)
19 3mao_A Methionine-R-sulfoxide 50.8 5.1 0.00018 27.4 1.0 29 13-41 10-38 (105)
20 1k81_A EIF-2-beta, probable tr 49.2 4.5 0.00015 22.4 0.4 23 17-39 1-29 (36)
21 2aus_D NOP10, ribosome biogene 49.2 7.2 0.00025 24.3 1.4 21 17-40 6-26 (60)
22 1vk6_A NADH pyrophosphatase; 1 49.0 7.3 0.00025 29.0 1.7 26 14-39 105-133 (269)
23 3e0o_A Peptide methionine sulf 48.9 12 0.00041 26.9 2.7 32 10-41 36-67 (144)
24 1pft_A TFIIB, PFTFIIBN; N-term 47.8 7.6 0.00026 21.9 1.3 24 16-39 5-32 (50)
25 2lcq_A Putative toxin VAPC6; P 47.5 7.8 0.00027 26.4 1.5 27 15-41 131-158 (165)
26 2k1p_A Zinc finger RAN-binding 47.1 11 0.00038 20.3 1.8 24 17-41 7-30 (33)
27 2l1u_A MSRB2, methionine-R-sul 47.1 10 0.00035 27.2 2.1 29 13-41 34-62 (143)
28 3hcj_A MSRB, peptide methionin 47.0 12 0.00043 27.1 2.6 30 12-41 46-75 (154)
29 3r8s_0 50S ribosomal protein L 45.4 8 0.00027 23.3 1.2 23 14-39 25-47 (56)
30 1nyp_A Pinch protein; LIM doma 44.8 9.5 0.00032 21.7 1.4 17 25-41 25-41 (66)
31 2d8z_A Four and A half LIM dom 44.7 12 0.00041 21.4 1.8 16 25-40 25-40 (70)
32 3hcg_A Peptide methionine sulf 44.7 7.2 0.00024 28.1 1.0 29 13-41 40-68 (146)
33 3pwf_A Rubrerythrin; non heme 44.0 10 0.00036 26.8 1.8 29 15-43 137-165 (170)
34 2dar_A PDZ and LIM domain prot 44.0 11 0.00039 22.8 1.7 26 16-41 25-61 (90)
35 2k8d_A Peptide methionine sulf 43.8 13 0.00046 26.8 2.3 29 13-41 58-86 (151)
36 1twf_L ABC10-alpha, DNA-direct 43.2 13 0.00043 23.4 1.9 27 13-39 25-53 (70)
37 1zfo_A LAsp-1; LIM domain, zin 42.8 12 0.0004 19.6 1.5 19 17-35 4-22 (31)
38 3cxk_A Methionine-R-sulfoxide 41.8 17 0.00057 26.7 2.6 29 13-41 70-98 (164)
39 1x62_A C-terminal LIM domain p 39.7 29 0.00099 20.4 3.1 28 13-40 12-50 (79)
40 1dl6_A Transcription factor II 39.4 22 0.00074 21.1 2.5 23 17-39 12-38 (58)
41 4ayb_P DNA-directed RNA polyme 38.3 16 0.00054 22.2 1.7 29 18-46 5-39 (48)
42 1x64_A Alpha-actinin-2 associa 38.0 32 0.0011 20.7 3.1 28 13-40 22-60 (89)
43 2dj7_A Actin-binding LIM prote 37.6 38 0.0013 20.3 3.4 38 3-41 3-52 (80)
44 2cur_A Skeletal muscle LIM-pro 37.4 16 0.00054 20.8 1.6 16 25-40 25-40 (69)
45 2ayj_A 50S ribosomal protein L 36.5 14 0.00049 22.9 1.3 25 15-40 18-42 (56)
46 3h0g_L DNA-directed RNA polyme 36.3 21 0.00072 22.2 2.1 29 12-40 17-47 (63)
47 3a43_A HYPD, hydrogenase nicke 34.8 15 0.00053 25.1 1.4 30 13-42 67-118 (139)
48 2cor_A Pinch protein; LIM doma 34.5 31 0.0011 20.5 2.6 28 15-42 14-52 (79)
49 1x6a_A LIMK-2, LIM domain kina 34.0 48 0.0017 19.3 3.4 26 15-40 14-50 (81)
50 3e0m_A Peptide methionine sulf 32.7 27 0.00091 27.7 2.6 31 11-41 204-234 (313)
51 1gh9_A 8.3 kDa protein (gene M 32.7 14 0.00048 23.4 0.8 29 17-47 5-38 (71)
52 2kdx_A HYPA, hydrogenase/ureas 32.5 20 0.00069 23.4 1.7 30 13-42 70-101 (119)
53 3k1f_M Transcription initiatio 32.4 20 0.00069 27.1 1.8 39 13-51 18-70 (197)
54 2lk0_A RNA-binding protein 5; 30.5 23 0.00079 18.8 1.4 23 17-40 6-28 (32)
55 3irb_A Uncharacterized protein 30.5 16 0.00056 25.0 1.0 24 15-39 46-69 (145)
56 1faq_A RAF-1; transferase, ser 30.4 16 0.00055 20.3 0.8 26 14-41 12-37 (52)
57 3h0g_I DNA-directed RNA polyme 30.3 21 0.00072 23.6 1.4 23 17-39 5-34 (113)
58 1mzb_A Ferric uptake regulatio 30.0 14 0.00048 24.2 0.5 12 14-25 89-100 (136)
59 2d8x_A Protein pinch; LIM doma 29.6 29 0.001 19.7 1.9 16 25-40 25-40 (70)
60 2dlo_A Thyroid receptor-intera 29.1 26 0.0009 20.6 1.6 26 15-40 14-50 (81)
61 2d74_B Translation initiation 29.0 25 0.00085 24.9 1.7 24 16-39 104-133 (148)
62 1x3h_A Leupaxin; paxillin fami 28.6 27 0.00093 20.3 1.6 24 17-40 16-50 (80)
63 1vq8_Z 50S ribosomal protein L 28.5 18 0.00061 23.3 0.8 24 16-39 27-53 (83)
64 2fnf_X Putative RAS effector N 28.4 30 0.001 21.2 1.8 27 13-40 32-58 (72)
65 3jyw_9 60S ribosomal protein L 27.8 31 0.0011 22.0 1.9 22 18-39 28-52 (72)
66 1kbe_A Kinase suppressor of RA 27.3 20 0.00067 20.9 0.8 23 16-40 14-36 (49)
67 1rfh_A RAS association (ralgds 27.2 28 0.00095 20.4 1.5 27 13-40 19-45 (59)
68 2cuq_A Four and A half LIM dom 27.0 32 0.0011 20.0 1.7 24 17-40 16-50 (80)
69 2h9a_A Carbon monoxide dehydro 26.3 14 0.00048 30.1 0.0 12 29-40 12-23 (445)
70 3eyy_A Putative iron uptake re 26.2 18 0.00061 24.2 0.5 13 13-25 87-99 (145)
71 2gnr_A Conserved hypothetical 25.9 23 0.0008 24.4 1.1 51 15-78 46-97 (145)
72 3mwm_A ZUR, putative metal upt 25.9 18 0.00062 24.0 0.5 12 14-25 85-96 (139)
73 2fe3_A Peroxide operon regulat 25.7 18 0.00063 24.0 0.5 12 14-25 91-102 (145)
74 3cw2_K Translation initiation 25.7 31 0.0011 24.1 1.7 25 15-39 102-132 (139)
75 2row_A RHO-associated protein 25.0 32 0.0011 22.1 1.6 27 14-40 33-63 (84)
76 4djd_C C/Fe-SP, corrinoid/iron 24.5 24 0.00082 29.1 1.1 12 29-40 12-23 (446)
77 2xig_A Ferric uptake regulatio 24.3 20 0.00069 24.0 0.5 12 14-25 97-108 (150)
78 2con_A RUH-035 protein, NIN on 23.7 36 0.0012 21.9 1.6 37 13-51 11-48 (79)
79 2cu8_A Cysteine-rich protein 2 23.1 74 0.0025 18.3 2.8 25 16-40 9-45 (76)
80 4ets_A Ferric uptake regulatio 22.9 22 0.00076 24.3 0.5 12 14-25 105-116 (162)
81 2w57_A Ferric uptake regulatio 22.9 22 0.00077 23.8 0.5 12 14-25 88-99 (150)
82 3k7a_M Transcription initiatio 22.6 39 0.0013 25.7 1.9 41 8-49 14-68 (345)
83 1twf_I B12.6, DNA-directed RNA 22.5 27 0.00091 23.3 0.8 23 17-39 5-34 (122)
84 2dj8_A Protein CBFA2T1; zinc f 22.4 67 0.0023 18.5 2.5 32 4-39 3-34 (60)
85 2e9h_A EIF-5, eukaryotic trans 22.3 30 0.001 24.8 1.1 24 16-39 103-134 (157)
86 1ptq_A Protein kinase C delta 22.2 41 0.0014 18.3 1.5 27 14-40 9-37 (50)
87 3qt1_I DNA-directed RNA polyme 22.2 43 0.0015 23.0 1.9 23 17-39 25-54 (133)
88 2yuu_A NPKC-delta, protein kin 21.5 40 0.0014 20.7 1.5 28 14-41 26-55 (83)
89 2co8_A NEDD9 interacting prote 21.4 1.1E+02 0.0038 18.1 3.5 26 15-40 14-51 (82)
90 2o03_A Probable zinc uptake re 20.9 26 0.0009 22.7 0.5 15 14-29 81-95 (131)
91 3iz5_m 60S ribosomal protein L 20.8 32 0.0011 22.9 0.9 22 18-39 38-62 (92)
92 2g2k_A EIF-5, eukaryotic trans 20.7 31 0.001 25.1 0.9 24 16-39 96-127 (170)
93 3izc_m 60S ribosomal protein R 20.4 32 0.0011 23.0 0.9 22 18-39 38-62 (92)
94 3iz5_i 60S ribosomal protein L 20.3 43 0.0015 23.3 1.5 57 23-79 28-96 (119)
95 1yuz_A Nigerythrin; rubrythrin 20.3 48 0.0016 23.8 1.9 28 15-42 170-197 (202)
No 1
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=100.00 E-value=2.7e-60 Score=327.46 Aligned_cols=93 Identities=87% Similarity=1.450 Sum_probs=90.6
Q ss_pred CCCCCCCCCCCCCCcccccccCCCccccccccccccccCcccccccCCccccccccccccccccccccccchhcccCcCc
Q 034400 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFRE 80 (95)
Q Consensus 1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGyps~k~R~YnWs~Ka~rr~ttGTGRmr~lk~v~rrfkngFre 80 (95)
|+||||||||+|+||||||+|||++|||+||++|++||||++++|+||||.||++|+|||||||||||+|+|||+|||||
T Consensus 1 MtKGT~SfGKr~~KtHtlCrRCG~~syH~qK~~Ca~CGyps~r~R~YnWs~Ka~rR~ttGTGRmr~lk~v~rrfkngfre 80 (94)
T 3iz5_l 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFRE 80 (94)
T ss_dssp CCSTHHHHHHCCCCSEEECTTTCSEEEEGGGTEETTTCSSCSSCCCCSSSCHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
T ss_pred CCCCCCCccccCCCccceecCcCchhhhcccccccccCCchhhcccccHHHhhccccCCCcchhhHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccc
Q 034400 81 GTQAAPRKKGAAA 93 (95)
Q Consensus 81 Gt~~~~~~~~~~~ 93 (95)
||+|+|+++++++
T Consensus 81 gt~~~~~~~~~~~ 93 (94)
T 3iz5_l 81 GTEATPRKRAAAA 93 (94)
T ss_dssp CCCCSSSCCSSSC
T ss_pred CCCCCCcccccCC
Confidence 9999999877643
No 2
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=100.00 E-value=1.5e-59 Score=323.77 Aligned_cols=92 Identities=59% Similarity=1.080 Sum_probs=88.7
Q ss_pred CCCCCCCCCCCCCCcccccccCCCccccccccccccccCcccccccCC-ccccccccccccccccccccccchhcccCcC
Q 034400 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYN-WSVKAIRRKTTGTGRMRYLRHVPRRFKSGFR 79 (95)
Q Consensus 1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGyps~k~R~Yn-Ws~Ka~rr~ttGTGRmr~lk~v~rrfkngFr 79 (95)
|+||||||||+|+||||||+|||++|||+||++|++||||++++|+|| ||.||++|+|||||||||||+|+|||+||||
T Consensus 1 MtKGT~SfGKr~~KtHtlCrRCG~~syH~qK~~Ca~CGyps~r~R~Yn~Ws~Ka~rR~ttGTGRmr~lk~v~rrfkngFr 80 (94)
T 4a18_A 1 MTRGTPAFGKRHQKTHTLCRRCGKATYHKQKLRCAACGYPDAKMRRYDGWGQKVRDRKGQGTGRMRYMKTIARRAKNGFR 80 (94)
T ss_dssp -CTTHHHHTTCCCCCEEECTTTCSEEEETTTTEESSSCGGGSSCCCCTTTCTTGGGTSSTTTSCCTTTHHHHHHHHTTCC
T ss_pred CCCCCCCccccCCCccceecCcCchhhhhccccccccCCcHHHhcCccHHHHHhccccCCCcchhHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cCCCCCccccccc
Q 034400 80 EGTQAAPRKKGAA 92 (95)
Q Consensus 80 eGt~~~~~~~~~~ 92 (95)
|||+|+|++++++
T Consensus 81 egt~~~~~~~~a~ 93 (94)
T 4a18_A 81 SGTQAAPKVKAAT 93 (94)
T ss_dssp CSCCCCCSSCCC-
T ss_pred cCCCCCCcccccc
Confidence 9999999988654
No 3
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=100.00 E-value=2.5e-57 Score=313.94 Aligned_cols=93 Identities=68% Similarity=1.165 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCCCcccccccCCCccccccccccccccCcccccccCCccccccccccccccccccccccchhcccCcCc
Q 034400 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFRE 80 (95)
Q Consensus 1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGyps~k~R~YnWs~Ka~rr~ttGTGRmr~lk~v~rrfkngFre 80 (95)
|+|||+||||+|+++|++|+|||+.+||+||++|++||||++++|+||||.||+||+|||||||||||+|+|||+|||||
T Consensus 1 M~KGT~SfGkr~~KtH~lCrRCG~~sfH~qK~~CgkCGYpa~k~R~ynWs~Ka~rr~ttgtGrmr~lk~v~rrfkngfre 80 (97)
T 2zkr_2 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFRE 80 (97)
T ss_dssp --CCSSSCSCSCCCCEECCTTTCSSCEETTSCCBTTTCTTTSSCCCCSSSSCC---------------------------
T ss_pred CCCCCCCcccccCCCCCcCCCCCCccCcCccccCcccCCchHhccCcchhhhhhhccCCCcceehHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccc
Q 034400 81 GTQAAPRKKGAAA 93 (95)
Q Consensus 81 Gt~~~~~~~~~~~ 93 (95)
|++|+|+++++++
T Consensus 81 g~~~~~~~~~~~~ 93 (97)
T 2zkr_2 81 GTTPKPKRAAVAA 93 (97)
T ss_dssp -------------
T ss_pred CCCCccccccccc
Confidence 9999988876654
No 4
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5e-38 Score=203.22 Aligned_cols=57 Identities=49% Similarity=0.985 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCCC-cccccccCCCccccccccccccccC-cccccccCCccccccccc
Q 034400 1 MGKGTGSFGKRRNK-THTLCVRCGRRSFHLQKSRCAACAY-PAARKRTYNWSVKAIRRK 57 (95)
Q Consensus 1 MtKGT~SfGKr~~k-tH~lCrRCG~~syH~qKk~Ca~CGy-ps~k~R~YnWs~Ka~rr~ 57 (95)
|+||||||||+|++ |||||||||++|||+||++|++||| |++++|+|||+.||++|.
T Consensus 1 MtKGT~SfGKr~~k~tH~lCrRCG~~syH~qK~~Ca~CGygps~r~R~YnWs~Ka~rr~ 59 (62)
T 3j21_e 1 MGSGTATFGKRNSTPTHIRCRRCGRVSYNVKKGYCAACGFGRSRRLRKYRWSKKWKKKK 59 (62)
T ss_dssp CCSCHHHHCCCSSSCCCCBCSSSCSBCEETTTTEETTTCTTTCSSCCCCTTCSHHHHHH
T ss_pred CCCCCccccccCCCCceeeecccCcchhccccccccccCCchhhhhccccHHHHhhccc
Confidence 99999999999998 9999999999999999999999999 999999999999998875
No 5
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=100.00 E-value=7.4e-38 Score=199.63 Aligned_cols=54 Identities=44% Similarity=0.939 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCCCCcccccccCCCccccccccccccccC-cccccccCCcccccc
Q 034400 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAY-PAARKRTYNWSVKAI 54 (95)
Q Consensus 1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGy-ps~k~R~YnWs~Ka~ 54 (95)
|+|||+||||||+||||||||||++|||+||++||+||| |++++|+||||.||+
T Consensus 2 MtKGT~SfGKr~~ktH~~CrRCG~~syH~qK~~Ca~CGygpa~r~R~ynWs~Kak 56 (57)
T 1vq8_1 2 TGAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKAG 56 (57)
T ss_dssp CCSSHHHHTTCCCCCEEECTTTCSEEEETTTTEETTTCTTTCSSCCCCGGGSCTT
T ss_pred CCCCCCcccccCCCccccccccCChhhhccccccccccCCchhhhcCcchhhhhc
Confidence 899999999999999999999999999999999999999 999999999999996
No 6
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=89.32 E-value=0.13 Score=30.70 Aligned_cols=27 Identities=33% Similarity=0.931 Sum_probs=20.8
Q ss_pred CcccccccCCCccc---cccccccccccCc
Q 034400 14 KTHTLCVRCGRRSF---HLQKSRCAACAYP 40 (95)
Q Consensus 14 ktH~lCrRCG~~sy---H~qKk~Ca~CGyp 40 (95)
...-.|++||...| |.....|++|||-
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred EecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 35667999998554 5567799999984
No 7
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=87.14 E-value=0.21 Score=31.05 Aligned_cols=25 Identities=24% Similarity=0.642 Sum_probs=21.9
Q ss_pred CCcccccccCCCccccccccccccccC
Q 034400 13 NKTHTLCVRCGRRSFHLQKSRCAACAY 39 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qKk~Ca~CGy 39 (95)
..+-+.|.-||. +|+.+..|..|||
T Consensus 27 ~p~l~~c~~cGe--~~~~H~vc~~CG~ 51 (60)
T 3v2d_5 27 PPTLVPCPECKA--MKPPHTVCPECGY 51 (60)
T ss_dssp CCCCEECTTTCC--EECTTSCCTTTCE
T ss_pred CCceeECCCCCC--eecceEEcCCCCc
Confidence 345688999998 8999999999998
No 8
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=85.62 E-value=0.35 Score=29.34 Aligned_cols=27 Identities=37% Similarity=1.046 Sum_probs=22.0
Q ss_pred CcccccccCCCccc---cccccccccccCc
Q 034400 14 KTHTLCVRCGRRSF---HLQKSRCAACAYP 40 (95)
Q Consensus 14 ktH~lCrRCG~~sy---H~qKk~Ca~CGyp 40 (95)
+..-.|+.||.-.| |.....|+.|||-
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCE
Confidence 45788999999554 6677899999995
No 9
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.90 E-value=0.43 Score=29.01 Aligned_cols=23 Identities=30% Similarity=0.889 Sum_probs=20.5
Q ss_pred cccccCCCccccccccccccccCc
Q 034400 17 TLCVRCGRRSFHLQKSRCAACAYP 40 (95)
Q Consensus 17 ~lCrRCG~~syH~qKk~Ca~CGyp 40 (95)
-+|++||.+ -+..-..|-.|||.
T Consensus 15 ~iCpkC~a~-~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGAT-NPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCE-ECTTCSSCSSSSSC
T ss_pred ccCCCCCCc-CCCCceecCCCCCc
Confidence 469999999 78888999999996
No 10
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=81.80 E-value=0.66 Score=28.69 Aligned_cols=25 Identities=28% Similarity=0.727 Sum_probs=21.9
Q ss_pred CCcccccccCCCccccccccccccccC
Q 034400 13 NKTHTLCVRCGRRSFHLQKSRCAACAY 39 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qKk~Ca~CGy 39 (95)
..+-+.|.-||.. ++....|..|||
T Consensus 27 ~p~l~~c~~cG~~--~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 27 APNLTECPQCHGK--KLSHHICPNCGY 51 (60)
T ss_dssp CCCCEECTTTCCE--ECTTBCCTTTCB
T ss_pred CCCceECCCCCCE--eCCceEcCCCCc
Confidence 4567789999987 999999999997
No 11
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=76.50 E-value=0.76 Score=33.88 Aligned_cols=26 Identities=23% Similarity=0.683 Sum_probs=21.1
Q ss_pred cccccccCCCc---cccccccccccccCc
Q 034400 15 THTLCVRCGRR---SFHLQKSRCAACAYP 40 (95)
Q Consensus 15 tH~lCrRCG~~---syH~qKk~Ca~CGyp 40 (95)
.+-.|++||-. +.|.....|+.|||-
T Consensus 112 ~~~~Cp~Cg~g~fma~h~dR~~CGkC~~t 140 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMAKHYDRHYCGKCHLT 140 (189)
T ss_dssp CSEECSTTCSSCEEEECSSCEEETTTCCC
T ss_pred ccccCCccCCCccccCccCCCccCCceeE
Confidence 45789999954 568888899999984
No 12
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=71.38 E-value=1.7 Score=27.88 Aligned_cols=32 Identities=34% Similarity=0.788 Sum_probs=25.8
Q ss_pred CCCcccccccCCCcc---ccccccccccccCcccccccCCcc
Q 034400 12 RNKTHTLCVRCGRRS---FHLQKSRCAACAYPAARKRTYNWS 50 (95)
Q Consensus 12 ~~ktH~lCrRCG~~s---yH~qKk~Ca~CGyps~k~R~YnWs 50 (95)
..+..|+|.-|+..+ ||+--..|..|| +||.-
T Consensus 33 ~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~-------SyNTr 67 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQFHILGMKCKICE-------SYNTA 67 (79)
T ss_dssp CCEEEEEESSSCCEEEEECCTTCCCCTTTS-------CCCEE
T ss_pred CCEeEEECCCCCCCccCCceeecccCcCCC-------CcCeE
Confidence 346789999999875 788877899999 77753
No 13
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=66.93 E-value=2.4 Score=26.48 Aligned_cols=21 Identities=29% Similarity=0.779 Sum_probs=17.3
Q ss_pred cccccCCCccccccccccccccCc
Q 034400 17 TLCVRCGRRSFHLQKSRCAACAYP 40 (95)
Q Consensus 17 ~lCrRCG~~syH~qKk~Ca~CGyp 40 (95)
..|..||.-+. +++|..||-+
T Consensus 7 r~C~~CgvYTL---k~~CP~CG~~ 27 (60)
T 2apo_B 7 KKCPKCGLYTL---KEICPKCGEK 27 (60)
T ss_dssp EECTTTCCEES---SSBCSSSCSB
T ss_pred eeCCCCCCEec---cccCcCCCCc
Confidence 46999977666 8999999985
No 14
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=62.48 E-value=3.5 Score=28.78 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=21.3
Q ss_pred ccccccc--CCCcc---ccccccccccccCc
Q 034400 15 THTLCVR--CGRRS---FHLQKSRCAACAYP 40 (95)
Q Consensus 15 tH~lCrR--CG~~s---yH~qKk~Ca~CGyp 40 (95)
.+-.|++ ||.-. .|..-..|+.|||-
T Consensus 117 ~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t 147 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANHKDRLYCGKCHSV 147 (152)
T ss_dssp CSCBCCSTTSCSSSBEEECSSCEEESSSSSC
T ss_pred CcCcCCCccCCCceEecccCCCcccCCCceE
Confidence 4677999 99865 57788899999984
No 15
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=56.50 E-value=5.1 Score=28.19 Aligned_cols=27 Identities=19% Similarity=0.484 Sum_probs=24.8
Q ss_pred cccccccCCCccccccccccccccCcc
Q 034400 15 THTLCVRCGRRSFHLQKSRCAACAYPA 41 (95)
Q Consensus 15 tH~lCrRCG~~syH~qKk~Ca~CGyps 41 (95)
---.|..||...|.-..|.-+.||.||
T Consensus 19 G~Y~C~~Cg~pLF~S~~KfdSg~GWPS 45 (124)
T 2kv1_A 19 GVYVCAKCSYELFSSHSKYAHSSPWPA 45 (124)
T ss_dssp EEEEETTTCCBCCCTTSCCCCCSSSCC
T ss_pred EEEEecCCCCcccccCCcccCCCCCce
Confidence 456899999999999999999999995
No 16
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=54.95 E-value=4.2 Score=29.28 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=19.2
Q ss_pred cccccccCCC-cccccc---ccccccccCc
Q 034400 15 THTLCVRCGR-RSFHLQ---KSRCAACAYP 40 (95)
Q Consensus 15 tH~lCrRCG~-~syH~q---Kk~Ca~CGyp 40 (95)
-|..|+-||. .+|.+- .-.|..||+-
T Consensus 13 ~~~~CP~Cg~~d~~~~~~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 13 YHIPCDNCGSSDGNSLFSDGHTFCYVCEKW 42 (255)
T ss_dssp EEECCSSSCCSSCEEEETTSCEEETTTCCE
T ss_pred cCCcCCCCCCCCCceEeCCCCeecccCCCc
Confidence 4999999998 344432 3689999973
No 17
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=51.68 E-value=6.9 Score=27.52 Aligned_cols=29 Identities=17% Similarity=0.454 Sum_probs=25.8
Q ss_pred CCcccccccCCCccccccccccccccCcc
Q 034400 13 NKTHTLCVRCGRRSFHLQKSRCAACAYPA 41 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qKk~Ca~CGyps 41 (95)
.+---.|..||..-|--..|.-+.||.||
T Consensus 17 ~~GiY~C~~Cg~pLF~S~~KFdSG~GWPS 45 (124)
T 2kao_A 17 EPGVYVCAKCSYELFSSHSKYAHSSPWPA 45 (124)
T ss_dssp CCCEEEESSSCCCCCCTTTSCCCCCSSCC
T ss_pred CCEEEEeCCCCCccccCcccccCCCCChh
Confidence 34566899999999999999999999994
No 18
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=51.52 E-value=5.8 Score=23.36 Aligned_cols=32 Identities=25% Similarity=0.724 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCcccccccCCCccccccccccccccC
Q 034400 4 GTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAY 39 (95)
Q Consensus 4 GT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGy 39 (95)
|.|+++--+...-..|..||..+ .+.|+.|..
T Consensus 1 ~~~~~~~~~~~~~~~C~~C~~~~----~~~Cs~C~~ 32 (60)
T 2od1_A 1 GSPNSGSPNSDSSESCWNCGRKA----SETCSGCNT 32 (60)
T ss_dssp ----------CCSSCCTTTSSCC----CEECTTTSC
T ss_pred CCCcccCcCCCCCCccccCCCcc----cccCCCCCC
Confidence 56788887777888999999954 578888874
No 19
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=50.83 E-value=5.1 Score=27.40 Aligned_cols=29 Identities=21% Similarity=0.528 Sum_probs=25.4
Q ss_pred CCcccccccCCCccccccccccccccCcc
Q 034400 13 NKTHTLCVRCGRRSFHLQKSRCAACAYPA 41 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qKk~Ca~CGyps 41 (95)
.+-.-.|..||...|--..|.-+.||.||
T Consensus 10 ~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPS 38 (105)
T 3mao_A 10 EPGVYVCAKCGYELFSSRSKYAHSSPWPA 38 (105)
T ss_dssp CSEEEEETTTCCEEEEGGGEECCSSSSCE
T ss_pred CCEEEEcCCCCCccccCCcccCCCCCChh
Confidence 34456899999999999999999999994
No 20
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=49.21 E-value=4.5 Score=22.40 Aligned_cols=23 Identities=30% Similarity=0.891 Sum_probs=17.0
Q ss_pred cccccCCCcccccccc------ccccccC
Q 034400 17 TLCVRCGRRSFHLQKS------RCAACAY 39 (95)
Q Consensus 17 ~lCrRCG~~syH~qKk------~Ca~CGy 39 (95)
.+|.-|++.--.+.++ .|.+||+
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~ 29 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGA 29 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCC
Confidence 3688888877777664 5888886
No 21
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=49.18 E-value=7.2 Score=24.31 Aligned_cols=21 Identities=33% Similarity=0.926 Sum_probs=16.8
Q ss_pred cccccCCCccccccccccccccCc
Q 034400 17 TLCVRCGRRSFHLQKSRCAACAYP 40 (95)
Q Consensus 17 ~lCrRCG~~syH~qKk~Ca~CGyp 40 (95)
-.|..||.-.. +.+|..||-+
T Consensus 6 r~C~~Cg~YTL---k~~CP~CG~~ 26 (60)
T 2aus_D 6 RKCPKCGRYTL---KETCPVCGEK 26 (60)
T ss_dssp EECTTTCCEES---SSBCTTTCSB
T ss_pred eECCCCCCEEc---cccCcCCCCc
Confidence 36899987665 8899999975
No 22
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=49.01 E-value=7.3 Score=29.00 Aligned_cols=26 Identities=23% Similarity=0.636 Sum_probs=20.3
Q ss_pred CcccccccCCCccccc---cccccccccC
Q 034400 14 KTHTLCVRCGRRSFHL---QKSRCAACAY 39 (95)
Q Consensus 14 ktH~lCrRCG~~syH~---qKk~Ca~CGy 39 (95)
.+|..|.+||...... ....|.+||+
T Consensus 105 ~~~~fC~~CG~~~~~~~~~~~~~C~~C~~ 133 (269)
T 1vk6_A 105 RSHKYCGYCGHEMYPSKTEWAMLCSHCRE 133 (269)
T ss_dssp HTTSBCTTTCCBEEECSSSSCEEESSSSC
T ss_pred hcCCccccCCCcCccCCCceeeeCCCCCC
Confidence 3577899999988654 3568999997
No 23
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=48.94 E-value=12 Score=26.86 Aligned_cols=32 Identities=13% Similarity=0.346 Sum_probs=27.7
Q ss_pred CCCCCcccccccCCCccccccccccccccCcc
Q 034400 10 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPA 41 (95)
Q Consensus 10 Kr~~ktH~lCrRCG~~syH~qKk~Ca~CGyps 41 (95)
.....-.-.|..||..-|--..|.-+.||.||
T Consensus 36 ~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPS 67 (144)
T 3e0o_A 36 DHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPS 67 (144)
T ss_dssp SCCCSEEEEETTTCCEEEETTTBCCCTTSSCE
T ss_pred CcCCCEEEEeCCCCcccccCcccccCCCCCcc
Confidence 34456677899999999999999999999995
No 24
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=47.83 E-value=7.6 Score=21.91 Aligned_cols=24 Identities=25% Similarity=0.768 Sum_probs=17.9
Q ss_pred ccccccCCCcc--c--cccccccccccC
Q 034400 16 HTLCVRCGRRS--F--HLQKSRCAACAY 39 (95)
Q Consensus 16 H~lCrRCG~~s--y--H~qKk~Ca~CGy 39 (95)
...|..||... | -.+...|..||.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCC
Confidence 34699999832 3 346789999998
No 25
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=47.51 E-value=7.8 Score=26.39 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=18.7
Q ss_pred cccccccCCCcccc-ccccccccccCcc
Q 034400 15 THTLCVRCGRRSFH-LQKSRCAACAYPA 41 (95)
Q Consensus 15 tH~lCrRCG~~syH-~qKk~Ca~CGyps 41 (95)
---.|..||+.-=. .....|..||.+-
T Consensus 131 ~~y~C~~Cg~~~~~~~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTLPPGGVCPDCGSKV 158 (165)
T ss_dssp CCEEESSSCCEESSCCGGGBCTTTCCBE
T ss_pred EEEECCCCCCcccCCCCCCcCCCCCCcc
Confidence 45689999965322 2345999999863
No 26
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=47.14 E-value=11 Score=20.25 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=19.2
Q ss_pred cccccCCCccccccccccccccCcc
Q 034400 17 TLCVRCGRRSFHLQKSRCAACAYPA 41 (95)
Q Consensus 17 ~lCrRCG~~syH~qKk~Ca~CGyps 41 (95)
-+|..||..-|..+ ..|..|+-|.
T Consensus 7 W~C~~C~~~Nfa~R-~~C~~C~~pk 30 (33)
T 2k1p_A 7 WQCKTCSNVNWARR-SECNMCNTPK 30 (33)
T ss_dssp CBCSSSCCBCCTTC-SBCSSSCCBT
T ss_pred cccCCCCCcccccc-ccccccCCcC
Confidence 46888998888877 7889998863
No 27
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=47.11 E-value=10 Score=27.18 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=25.3
Q ss_pred CCcccccccCCCccccccccccccccCcc
Q 034400 13 NKTHTLCVRCGRRSFHLQKSRCAACAYPA 41 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qKk~Ca~CGyps 41 (95)
.+-.-.|..||...|--..|.-+.||.||
T Consensus 34 ~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPS 62 (143)
T 2l1u_A 34 ETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62 (143)
T ss_dssp CCEEEEESSSSCEEEEGGGBCTTTTCCSB
T ss_pred CCeEEEeCCCCCeeecCcccccCCCCChh
Confidence 34455799999999999999999999995
No 28
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=47.03 E-value=12 Score=27.07 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=26.4
Q ss_pred CCCcccccccCCCccccccccccccccCcc
Q 034400 12 RNKTHTLCVRCGRRSFHLQKSRCAACAYPA 41 (95)
Q Consensus 12 ~~ktH~lCrRCG~~syH~qKk~Ca~CGyps 41 (95)
..+-.-.|..||..-|--..|.-+.||.||
T Consensus 46 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPS 75 (154)
T 3hcj_A 46 KLDGVYTCRLCGLPLFRSNAKFDSGTGWPS 75 (154)
T ss_dssp CSSEEEEETTTCCEEEEECTTCCCCTTSST
T ss_pred CCCEEEEccCCCCccccCcccccCCCCCcc
Confidence 345567899999999999999999999994
No 29
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=45.42 E-value=8 Score=23.33 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=19.9
Q ss_pred CcccccccCCCccccccccccccccC
Q 034400 14 KTHTLCVRCGRRSFHLQKSRCAACAY 39 (95)
Q Consensus 14 ktH~lCrRCG~~syH~qKk~Ca~CGy 39 (95)
.+-..|.-||. +++....|.+ ||
T Consensus 25 p~l~~c~~cGe--~~l~H~vc~~-G~ 47 (56)
T 3r8s_0 25 TSLSVDKTSGE--KHLRHHITAD-GY 47 (56)
T ss_dssp CCEEECTTTCC--EEETTBCCTT-SE
T ss_pred CceeECCCCCC--eecccEECCC-Ce
Confidence 45688999998 8999999998 76
No 30
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=44.84 E-value=9.5 Score=21.66 Aligned_cols=17 Identities=29% Similarity=0.784 Sum_probs=14.2
Q ss_pred ccccccccccccccCcc
Q 034400 25 RSFHLQKSRCAACAYPA 41 (95)
Q Consensus 25 ~syH~qKk~Ca~CGyps 41 (95)
+.||.+=-+|+.|+-|-
T Consensus 25 ~~~H~~CF~C~~C~~~L 41 (66)
T 1nyp_A 25 KQWHVEHFVCAKCEKPF 41 (66)
T ss_dssp SBEETTTCBCTTTCCBC
T ss_pred cccccCcCEECCCCCCC
Confidence 68999999999998763
No 31
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.74 E-value=12 Score=21.40 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=14.0
Q ss_pred ccccccccccccccCc
Q 034400 25 RSFHLQKSRCAACAYP 40 (95)
Q Consensus 25 ~syH~qKk~Ca~CGyp 40 (95)
+.||.+--+|..|+-|
T Consensus 25 ~~~H~~CF~C~~C~~~ 40 (70)
T 2d8z_A 25 QPWHKECFVCTACRKQ 40 (70)
T ss_dssp SEEETTTSBCSSSCCB
T ss_pred cccCCCCCccCCCCCc
Confidence 6899999999999875
No 32
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=44.67 E-value=7.2 Score=28.06 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=25.9
Q ss_pred CCcccccccCCCccccccccccccccCcc
Q 034400 13 NKTHTLCVRCGRRSFHLQKSRCAACAYPA 41 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qKk~Ca~CGyps 41 (95)
..-.-.|..||..-|--..|.-+.||.||
T Consensus 40 ~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPS 68 (146)
T 3hcg_A 40 KPGIYVDVVSGEPLFSSADKYDSGCGWPS 68 (146)
T ss_dssp CSEEEEETTTCCEEEEGGGEECCSSSSCE
T ss_pred CCEEEEecCCCcccccCcccccCCCCChh
Confidence 45566899999999999999999999994
No 33
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=44.02 E-value=10 Score=26.78 Aligned_cols=29 Identities=21% Similarity=0.580 Sum_probs=19.9
Q ss_pred cccccccCCCccccccccccccccCcccc
Q 034400 15 THTLCVRCGRRSFHLQKSRCAACAYPAAR 43 (95)
Q Consensus 15 tH~lCrRCG~~syH~qKk~Ca~CGyps~k 43 (95)
.--+|+.||-.------..|..||.|...
T Consensus 137 ~~~~C~~CG~i~~~~~p~~CP~Cg~~~~~ 165 (170)
T 3pwf_A 137 KVYICPICGYTAVDEAPEYCPVCGAPKEK 165 (170)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCCBGGG
T ss_pred CeeEeCCCCCeeCCCCCCCCCCCCCCHHH
Confidence 44569999986542223499999987543
No 34
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.01 E-value=11 Score=22.85 Aligned_cols=26 Identities=27% Similarity=0.807 Sum_probs=21.0
Q ss_pred ccccccCCC-----------ccccccccccccccCcc
Q 034400 16 HTLCVRCGR-----------RSFHLQKSRCAACAYPA 41 (95)
Q Consensus 16 H~lCrRCG~-----------~syH~qKk~Ca~CGyps 41 (95)
-..|..|+. +.||.+--+|..|+-+-
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L 61 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTM 61 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBC
T ss_pred CCCCccCCCEecceEEEECCccccccCCccCCCCCCC
Confidence 356888887 67999999999999763
No 35
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=43.83 E-value=13 Score=26.80 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=25.5
Q ss_pred CCcccccccCCCccccccccccccccCcc
Q 034400 13 NKTHTLCVRCGRRSFHLQKSRCAACAYPA 41 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qKk~Ca~CGyps 41 (95)
.+-.-.|..||...|--..|.-+.||.||
T Consensus 58 ~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPS 86 (151)
T 2k8d_A 58 DDGIYRCICCGTDLFDSETKFDSGTGWPS 86 (151)
T ss_dssp SCSEEEETTTTEEEEEGGGSCCSTTCCSE
T ss_pred CCEEEEecCCCCcccCCcccccCCCCCcc
Confidence 34556799999999999999999999995
No 36
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=43.23 E-value=13 Score=23.42 Aligned_cols=27 Identities=22% Similarity=0.666 Sum_probs=20.5
Q ss_pred CCcccccccCCCc-ccc-ccccccccccC
Q 034400 13 NKTHTLCVRCGRR-SFH-LQKSRCAACAY 39 (95)
Q Consensus 13 ~ktH~lCrRCG~~-syH-~qKk~Ca~CGy 39 (95)
++.--+|..||.. ..| ...-.|-.||+
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCc
Confidence 5777899999998 223 34567999998
No 37
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=42.80 E-value=12 Score=19.57 Aligned_cols=19 Identities=32% Similarity=0.842 Sum_probs=14.6
Q ss_pred cccccCCCccccccccccc
Q 034400 17 TLCVRCGRRSFHLQKSRCA 35 (95)
Q Consensus 17 ~lCrRCG~~syH~qKk~Ca 35 (95)
..|.+||+..|-.++....
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~ 22 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCL 22 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSS
T ss_pred CcCCccCCEEecceeEEEC
Confidence 4788999999888776643
No 38
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=41.78 E-value=17 Score=26.65 Aligned_cols=29 Identities=24% Similarity=0.576 Sum_probs=25.4
Q ss_pred CCcccccccCCCccccccccccccccCcc
Q 034400 13 NKTHTLCVRCGRRSFHLQKSRCAACAYPA 41 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qKk~Ca~CGyps 41 (95)
.+-.-.|..||...|--..|.-+.||.||
T Consensus 70 ~~GiY~C~~Cg~pLF~S~~KFdSGcGWPS 98 (164)
T 3cxk_A 70 DAGIYHCVVCGTALFESGAKYHSGCGWPS 98 (164)
T ss_dssp CSEEEEETTTCCEEEEGGGBCCCCSSSCE
T ss_pred CCeEEEccCCCccccCCchhccCCCCCcc
Confidence 34455899999999999999999999995
No 39
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.73 E-value=29 Score=20.42 Aligned_cols=28 Identities=25% Similarity=0.625 Sum_probs=22.1
Q ss_pred CCcccccccCCC-----------ccccccccccccccCc
Q 034400 13 NKTHTLCVRCGR-----------RSFHLQKSRCAACAYP 40 (95)
Q Consensus 13 ~ktH~lCrRCG~-----------~syH~qKk~Ca~CGyp 40 (95)
...-.+|..|+. +.||.+=-+|..|+-+
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~ 50 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTN 50 (79)
T ss_dssp CCCCCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCC
T ss_pred CCCCCccccCCCCccCcEEEECcceeCcCcCeeCCCCCC
Confidence 345578999987 4689988899999875
No 40
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=39.36 E-value=22 Score=21.15 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=17.3
Q ss_pred cccccCCCcc----ccccccccccccC
Q 034400 17 TLCVRCGRRS----FHLQKSRCAACAY 39 (95)
Q Consensus 17 ~lCrRCG~~s----yH~qKk~Ca~CGy 39 (95)
..|..||... +--.--.|..||.
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 3699999833 3345779999998
No 41
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=38.29 E-value=16 Score=22.16 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=20.1
Q ss_pred ccccCCCccccccc-----cccccccCc-cccccc
Q 034400 18 LCVRCGRRSFHLQK-----SRCAACAYP-AARKRT 46 (95)
Q Consensus 18 lCrRCG~~syH~qK-----k~Ca~CGyp-s~k~R~ 46 (95)
.|-|||+.--..+- -.|.-|||. -.+.|+
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR~ 39 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRK 39 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEEEecC
Confidence 68999987555443 479999995 345554
No 42
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.03 E-value=32 Score=20.71 Aligned_cols=28 Identities=29% Similarity=0.623 Sum_probs=22.3
Q ss_pred CCcccccccCCC-----------ccccccccccccccCc
Q 034400 13 NKTHTLCVRCGR-----------RSFHLQKSRCAACAYP 40 (95)
Q Consensus 13 ~ktH~lCrRCG~-----------~syH~qKk~Ca~CGyp 40 (95)
...-..|..|+. +.||.+--+|..|+-+
T Consensus 22 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~ 60 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLN 60 (89)
T ss_dssp CCSCCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCC
T ss_pred CCcCCCcccCCCEecccEEEECCceECccCCEecCCCCC
Confidence 345567999987 4789999999999975
No 43
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.57 E-value=38 Score=20.28 Aligned_cols=38 Identities=16% Similarity=0.463 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCcccccccCCCc------------cccccccccccccCcc
Q 034400 3 KGTGSFGKRRNKTHTLCVRCGRR------------SFHLQKSRCAACAYPA 41 (95)
Q Consensus 3 KGT~SfGKr~~ktH~lCrRCG~~------------syH~qKk~Ca~CGyps 41 (95)
.||+.+=.+- ..-..|..|++. .||.+--+|..|+-+-
T Consensus 3 ~g~~~~~~~~-~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L 52 (80)
T 2dj7_A 3 SGSSGKPIKI-RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVIL 52 (80)
T ss_dssp CCCCCCCCCC-SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBC
T ss_pred CCcCCCCcCC-CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCc
Confidence 4555543332 235679999874 4788888999998763
No 44
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.35 E-value=16 Score=20.84 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=13.6
Q ss_pred ccccccccccccccCc
Q 034400 25 RSFHLQKSRCAACAYP 40 (95)
Q Consensus 25 ~syH~qKk~Ca~CGyp 40 (95)
+.||..--+|+.|+-|
T Consensus 25 ~~~H~~CF~C~~C~~~ 40 (69)
T 2cur_A 25 QPWHADCFVCVTCSKK 40 (69)
T ss_dssp EEECTTTTBCTTTCCB
T ss_pred cccccCcCEECCCCCC
Confidence 5789998999999876
No 45
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=36.51 E-value=14 Score=22.85 Aligned_cols=25 Identities=20% Similarity=0.691 Sum_probs=19.6
Q ss_pred cccccccCCCccccccccccccccCc
Q 034400 15 THTLCVRCGRRSFHLQKSRCAACAYP 40 (95)
Q Consensus 15 tH~lCrRCG~~syH~qKk~Ca~CGyp 40 (95)
.--+|++|+-+ -|+.-..|-.|||.
T Consensus 18 ~k~ICrkC~AR-np~~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGAL-NPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCE-ECTTCSSCTTTCCC
T ss_pred chhhhccccCc-CCcccccccCCCCC
Confidence 44689999976 47778889899974
No 46
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=36.34 E-value=21 Score=22.24 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=21.0
Q ss_pred CCCcccccccCCCccccc--cccccccccCc
Q 034400 12 RNKTHTLCVRCGRRSFHL--QKSRCAACAYP 40 (95)
Q Consensus 12 ~~ktH~lCrRCG~~syH~--qKk~Ca~CGyp 40 (95)
....--+|-+||...--. ..-+|-.|||.
T Consensus 17 ~~~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~R 47 (63)
T 3h0g_L 17 PATMIYLCADCGARNTIQAKEVIRCRECGHR 47 (63)
T ss_dssp --CCCCBCSSSCCBCCCCSSSCCCCSSSCCC
T ss_pred CCCeEEECCCCCCeeecCCCCceECCCCCcE
Confidence 356788999999876433 35789999995
No 47
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=34.84 E-value=15 Score=25.06 Aligned_cols=30 Identities=13% Similarity=0.219 Sum_probs=20.5
Q ss_pred CCcccccccCCCcccccc----------------------ccccccccCccc
Q 034400 13 NKTHTLCVRCGRRSFHLQ----------------------KSRCAACAYPAA 42 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~q----------------------Kk~Ca~CGyps~ 42 (95)
.+.-..|+.||...--.+ -..|..||-|..
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 356788999998732222 467999997643
No 48
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.50 E-value=31 Score=20.47 Aligned_cols=28 Identities=21% Similarity=0.630 Sum_probs=21.3
Q ss_pred cccccccCCC-----------ccccccccccccccCccc
Q 034400 15 THTLCVRCGR-----------RSFHLQKSRCAACAYPAA 42 (95)
Q Consensus 15 tH~lCrRCG~-----------~syH~qKk~Ca~CGyps~ 42 (95)
.-..|..|+. +.||..--+|..|+-|-.
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCC
T ss_pred CCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccC
Confidence 3456888876 578999999999997643
No 49
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.95 E-value=48 Score=19.29 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=18.9
Q ss_pred cccccccCCC-----------ccccccccccccccCc
Q 034400 15 THTLCVRCGR-----------RSFHLQKSRCAACAYP 40 (95)
Q Consensus 15 tH~lCrRCG~-----------~syH~qKk~Ca~CGyp 40 (95)
....|..|+. +.||..--+|..|+-+
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~ 50 (81)
T 1x6a_A 14 FGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVI 50 (81)
T ss_dssp SSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCB
T ss_pred cCCcCccCCCCcCceEEEECCceeccccCCccCCCCc
Confidence 3346777776 5788888888888865
No 50
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=32.69 E-value=27 Score=27.75 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=27.3
Q ss_pred CCCCcccccccCCCccccccccccccccCcc
Q 034400 11 RRNKTHTLCVRCGRRSFHLQKSRCAACAYPA 41 (95)
Q Consensus 11 r~~ktH~lCrRCG~~syH~qKk~Ca~CGyps 41 (95)
....-.-.|..||...|--..|.-+.||.||
T Consensus 204 ~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPS 234 (313)
T 3e0m_A 204 TFEEGIYVDITTGEPLFFAKDKFASGCGWPS 234 (313)
T ss_dssp CCCSEEEEETTTCCEEEEGGGBCCCCSSSCE
T ss_pred CCCCeEEEecCCCccccCCCccccCCCCCcc
Confidence 3456677899999999999999999999995
No 51
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=32.68 E-value=14 Score=23.36 Aligned_cols=29 Identities=24% Similarity=0.739 Sum_probs=20.5
Q ss_pred cccccCCCcccc---ccccccccccC--cccccccC
Q 034400 17 TLCVRCGRRSFH---LQKSRCAACAY--PAARKRTY 47 (95)
Q Consensus 17 ~lCrRCG~~syH---~qKk~Ca~CGy--ps~k~R~Y 47 (95)
+.|. ||+-+|= ...+.|. ||. ...+.|.|
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~rif 38 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRIF 38 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEET-TTEEEECCSSSCB
T ss_pred EECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEEE
Confidence 5788 9998874 3567898 997 34555555
No 52
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=32.55 E-value=20 Score=23.43 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=20.5
Q ss_pred CCcccccccCCCcccccc-cc-ccccccCccc
Q 034400 13 NKTHTLCVRCGRRSFHLQ-KS-RCAACAYPAA 42 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~q-Kk-~Ca~CGyps~ 42 (95)
.+.-..|+.||...--.. -. .|..||-|..
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 456778999998643322 24 7999997643
No 53
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=32.38 E-value=20 Score=27.10 Aligned_cols=39 Identities=21% Similarity=0.339 Sum_probs=27.9
Q ss_pred CCcccccccCCCc----c--ccccccccccccCc--------ccccccCCccc
Q 034400 13 NKTHTLCVRCGRR----S--FHLQKSRCAACAYP--------AARKRTYNWSV 51 (95)
Q Consensus 13 ~ktH~lCrRCG~~----s--yH~qKk~Ca~CGyp--------s~k~R~YnWs~ 51 (95)
-.....|..||.. . +-----.|..||.= ..-+|.|+...
T Consensus 18 ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFsnDD 70 (197)
T 3k1f_M 18 LNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNXX 70 (197)
T ss_dssp CCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHHCCC
T ss_pred cccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcCCcc
Confidence 3456689999983 1 34566789999992 45678887653
No 54
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=30.53 E-value=23 Score=18.81 Aligned_cols=23 Identities=26% Similarity=0.671 Sum_probs=16.5
Q ss_pred cccccCCCccccccccccccccCc
Q 034400 17 TLCVRCGRRSFHLQKSRCAACAYP 40 (95)
Q Consensus 17 ~lCrRCG~~syH~qKk~Ca~CGyp 40 (95)
-+|.-||..-|=.+ ..|..||-|
T Consensus 6 W~C~~C~~~Nfa~r-~~C~~C~~p 28 (32)
T 2lk0_A 6 WLCNKCCLNNFRKR-LKCFRCGAD 28 (32)
T ss_dssp EECTTTCCEEETTC-CBCTTTCCB
T ss_pred CCcCcCcCCcChhc-ceecCCCCc
Confidence 35777877777555 778888876
No 55
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=30.52 E-value=16 Score=24.99 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=19.0
Q ss_pred cccccccCCCccccccccccccccC
Q 034400 15 THTLCVRCGRRSFHLQKSRCAACAY 39 (95)
Q Consensus 15 tH~lCrRCG~~syH~qKk~Ca~CGy 39 (95)
.-..|..||...|-.+ ..|..||-
T Consensus 46 ~~~rC~~CG~~~~PPr-~~Cp~C~s 69 (145)
T 3irb_A 46 IGSKCSKCGRIFVPAR-SYCEHCFV 69 (145)
T ss_dssp EEEECTTTCCEEESCC-SEETTTTE
T ss_pred EEEEeCCCCcEEcCch-hhCcCCCC
Confidence 3467999999888776 57999994
No 56
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=30.38 E-value=16 Score=20.27 Aligned_cols=26 Identities=23% Similarity=0.579 Sum_probs=21.8
Q ss_pred CcccccccCCCccccccccccccccCcc
Q 034400 14 KTHTLCVRCGRRSFHLQKSRCAACAYPA 41 (95)
Q Consensus 14 ktH~lCrRCG~~syH~qKk~Ca~CGyps 41 (95)
..-+.|--|++.-| |--.|..|+|..
T Consensus 12 ~~pt~C~~C~~~l~--qG~~C~~C~~~~ 37 (52)
T 1faq_A 12 LKLAFCDICQKFLL--NGFRCQTCGYKF 37 (52)
T ss_dssp SSCEECTTSSSEEC--SEEECTTTTCCB
T ss_pred CCCcCCCCcccccc--cCCEeCCCCCeE
Confidence 34588999999887 999999999854
No 57
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.30 E-value=21 Score=23.57 Aligned_cols=23 Identities=22% Similarity=0.787 Sum_probs=19.1
Q ss_pred cccccCCCccccccc-------cccccccC
Q 034400 17 TLCVRCGRRSFHLQK-------SRCAACAY 39 (95)
Q Consensus 17 ~lCrRCG~~syH~qK-------k~Ca~CGy 39 (95)
..|..||+--|-... -.|..|||
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y 34 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDY 34 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCC
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCC
Confidence 469999998887653 78999999
No 58
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.97 E-value=14 Score=24.25 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=9.9
Q ss_pred CcccccccCCCc
Q 034400 14 KTHTLCVRCGRR 25 (95)
Q Consensus 14 ktH~lCrRCG~~ 25 (95)
--|.+|..||+.
T Consensus 89 H~HliC~~Cg~v 100 (136)
T 1mzb_A 89 HDHMVCVDTGEV 100 (136)
T ss_dssp CEEEEETTTCCE
T ss_pred ceEEEECCCCCE
Confidence 368999999974
No 59
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.57 E-value=29 Score=19.71 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.7
Q ss_pred ccccccccccccccCc
Q 034400 25 RSFHLQKSRCAACAYP 40 (95)
Q Consensus 25 ~syH~qKk~Ca~CGyp 40 (95)
+.||.+--+|..|+-|
T Consensus 25 ~~~H~~CF~C~~C~~~ 40 (70)
T 2d8x_A 25 NSWHPECFRCDLCQEV 40 (70)
T ss_dssp EEECTTTSBCSSSCCB
T ss_pred ccccccCCEeCCCCCc
Confidence 4789999999999875
No 60
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.06 E-value=26 Score=20.57 Aligned_cols=26 Identities=23% Similarity=0.616 Sum_probs=18.4
Q ss_pred cccccccCCC-----------ccccccccccccccCc
Q 034400 15 THTLCVRCGR-----------RSFHLQKSRCAACAYP 40 (95)
Q Consensus 15 tH~lCrRCG~-----------~syH~qKk~Ca~CGyp 40 (95)
....|..|+. +.||.+=-+|+.|+-|
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~ 50 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRG 50 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCB
T ss_pred CCCccccCCCeecceeEEECCccccHHhcCcccCCCc
Confidence 3456777776 5688888888888765
No 61
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=29.01 E-value=25 Score=24.94 Aligned_cols=24 Identities=29% Similarity=0.757 Sum_probs=19.3
Q ss_pred ccccccCCCcccccccc------ccccccC
Q 034400 16 HTLCVRCGRRSFHLQKS------RCAACAY 39 (95)
Q Consensus 16 H~lCrRCG~~syH~qKk------~Ca~CGy 39 (95)
-.+|.-|++.-=.+.++ .|.+||.
T Consensus 104 yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa 133 (148)
T 2d74_B 104 YVICPVCGSPDTKIIKRDRFHFLKCEACGA 133 (148)
T ss_dssp HSSCSSSCCTTCCCCBSSSSBCCCCSSSCC
T ss_pred EEECCCCCCcCcEEEEeCCEEEEEecCCCC
Confidence 36899999988777765 5999997
No 62
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.65 E-value=27 Score=20.32 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=17.8
Q ss_pred cccccCCC-----------ccccccccccccccCc
Q 034400 17 TLCVRCGR-----------RSFHLQKSRCAACAYP 40 (95)
Q Consensus 17 ~lCrRCG~-----------~syH~qKk~Ca~CGyp 40 (95)
..|..|+. ..||.+=-+|+.|+-|
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~ 50 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTS 50 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCB
T ss_pred CccccCCCeecceeEEECCCeEecCcCChhhCCCC
Confidence 46777776 5688888888888865
No 63
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=28.47 E-value=18 Score=23.34 Aligned_cols=24 Identities=25% Similarity=0.642 Sum_probs=17.3
Q ss_pred ccccccCCCcc-cc--ccccccccccC
Q 034400 16 HTLCVRCGRRS-FH--LQKSRCAACAY 39 (95)
Q Consensus 16 H~lCrRCG~~s-yH--~qKk~Ca~CGy 39 (95)
.-.|..||... |- .+...|..||+
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDY 53 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCC
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCC
Confidence 44699999843 22 45678999997
No 64
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=28.44 E-value=30 Score=21.16 Aligned_cols=27 Identities=33% Similarity=0.673 Sum_probs=22.6
Q ss_pred CCcccccccCCCccccccccccccccCc
Q 034400 13 NKTHTLCVRCGRRSFHLQKSRCAACAYP 40 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qKk~Ca~CGyp 40 (95)
-+.-+.|--||..- -.|-..|..|+|-
T Consensus 32 ~~~pt~C~~C~~~l-~~qG~kC~~C~~~ 58 (72)
T 2fnf_X 32 RGGPGWCDLCGREV-LRQALRCANCKFT 58 (72)
T ss_dssp CSSCCBCTTTSSBC-SSCCEECTTSSCE
T ss_pred CCCCcchhhhhHHH-HhCcCccCCCCCe
Confidence 45678899999998 6688899999984
No 65
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=27.82 E-value=31 Score=22.02 Aligned_cols=22 Identities=23% Similarity=0.667 Sum_probs=12.5
Q ss_pred ccccCCCccccccc---cccccccC
Q 034400 18 LCVRCGRRSFHLQK---SRCAACAY 39 (95)
Q Consensus 18 lCrRCG~~syH~qK---k~Ca~CGy 39 (95)
.|..||+.+.--+- ..|.+||+
T Consensus 28 ~C~fCgk~~vkR~a~GIW~C~~C~~ 52 (72)
T 3jyw_9 28 DCSFCGKKTVKRGAAGIWTCSCCKK 52 (72)
T ss_dssp CCSSCCSSCBSBCSSSCBCCSSSCC
T ss_pred cCCCCCCceeEecCCCeEECCCCCC
Confidence 57777766533221 45777765
No 66
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=27.33 E-value=20 Score=20.92 Aligned_cols=23 Identities=17% Similarity=0.582 Sum_probs=19.8
Q ss_pred ccccccCCCccccccccccccccCc
Q 034400 16 HTLCVRCGRRSFHLQKSRCAACAYP 40 (95)
Q Consensus 16 H~lCrRCG~~syH~qKk~Ca~CGyp 40 (95)
.+.|.-|++.-| |-..|..|+|-
T Consensus 14 ~t~C~~C~k~i~--~G~kC~~Ck~~ 36 (49)
T 1kbe_A 14 SQVCNVCQKSMI--FGVKCKHCRLK 36 (49)
T ss_dssp SCCCSSSCCSSC--CEEEETTTTEE
T ss_pred CcCccccCceeE--CcCCCCCCCCc
Confidence 388999999998 66899999984
No 67
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=27.19 E-value=28 Score=20.36 Aligned_cols=27 Identities=33% Similarity=0.673 Sum_probs=22.6
Q ss_pred CCcccccccCCCccccccccccccccCc
Q 034400 13 NKTHTLCVRCGRRSFHLQKSRCAACAYP 40 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qKk~Ca~CGyp 40 (95)
-..-+.|--||..- -.|-..|..|+|-
T Consensus 19 ~~~pt~C~~C~~~i-~kqg~kC~~C~~~ 45 (59)
T 1rfh_A 19 RGGPGWCDLCGREV-LRQALRCANCKFT 45 (59)
T ss_dssp SSCCEECTTTCSEE-CSCCEECTTTSCE
T ss_pred cCCCeEchhcchhh-hhCccEeCCCCCe
Confidence 45678899999998 5788899999984
No 68
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.96 E-value=32 Score=19.97 Aligned_cols=24 Identities=29% Similarity=0.868 Sum_probs=17.4
Q ss_pred cccccCCC-----------ccccccccccccccCc
Q 034400 17 TLCVRCGR-----------RSFHLQKSRCAACAYP 40 (95)
Q Consensus 17 ~lCrRCG~-----------~syH~qKk~Ca~CGyp 40 (95)
..|..|+. +.||..=-+|+.|+-|
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~ 50 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTP 50 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCB
T ss_pred CcCCCCCCEecCcEEEECCchhhhhhCCcccCCCc
Confidence 45666665 5788888888888765
No 69
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*
Probab=26.27 E-value=14 Score=30.09 Aligned_cols=12 Identities=42% Similarity=1.010 Sum_probs=0.0
Q ss_pred ccccccccccCc
Q 034400 29 LQKSRCAACAYP 40 (95)
Q Consensus 29 ~qKk~Ca~CGyp 40 (95)
+.+.-|+.||||
T Consensus 12 LP~~nCg~CG~p 23 (445)
T 2h9a_A 12 LPKKNCKECGQP 23 (445)
T ss_dssp ------------
T ss_pred CCCCCCccCCcc
Confidence 345679999998
No 70
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.17 E-value=18 Score=24.18 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.7
Q ss_pred CCcccccccCCCc
Q 034400 13 NKTHTLCVRCGRR 25 (95)
Q Consensus 13 ~ktH~lCrRCG~~ 25 (95)
.--|..|..||+.
T Consensus 87 ~H~HliC~~Cg~v 99 (145)
T 3eyy_A 87 HHIHLVCRDCTNV 99 (145)
T ss_dssp CSEEEEESSSSCE
T ss_pred CceEEEECCCCCE
Confidence 3478999999985
No 71
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=25.94 E-value=23 Score=24.43 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=30.4
Q ss_pred cccccccCCCccccccccccccccCcccccccCCccccccccccc-cccccccccccchhcccCc
Q 034400 15 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTT-GTGRMRYLRHVPRRFKSGF 78 (95)
Q Consensus 15 tH~lCrRCG~~syH~qKk~Ca~CGyps~k~R~YnWs~Ka~rr~tt-GTGRmr~lk~v~rrfkngF 78 (95)
.-..|..||...| .-...|..||-. .+.|- ... |+|..--.-++.+. -.||
T Consensus 46 ~~~rC~~CG~~~f-PPr~~Cp~C~s~-----~~e~v------~ls~g~GtV~S~Tvv~~~-~pgf 97 (145)
T 2gnr_A 46 IGSKCSKCGRIFV-PARSYCEHCFVK-----IENYV------EINKDEAYVDSYTIIYND-DEGN 97 (145)
T ss_dssp EEEECTTTCCEEE-SCCSEETTTTEE-----CCEEE------ECCGGGCEEEEEEEEEEC-TTSC
T ss_pred EEEEECCCCcEEe-CCCCCCCCCCCC-----ccEEE------EccCCcEEEEEEEEEccC-CCCc
Confidence 3457999998755 455689999833 23342 234 66666555555443 3455
No 72
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.87 E-value=18 Score=23.96 Aligned_cols=12 Identities=33% Similarity=0.996 Sum_probs=10.1
Q ss_pred CcccccccCCCc
Q 034400 14 KTHTLCVRCGRR 25 (95)
Q Consensus 14 ktH~lCrRCG~~ 25 (95)
--|..|..||+.
T Consensus 85 H~HliC~~Cg~v 96 (139)
T 3mwm_A 85 HHHLVCRACGKA 96 (139)
T ss_dssp CEEEEETTTCCE
T ss_pred ccEEEECCCCCE
Confidence 468999999975
No 73
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.66 E-value=18 Score=23.97 Aligned_cols=12 Identities=33% Similarity=1.010 Sum_probs=10.1
Q ss_pred CcccccccCCCc
Q 034400 14 KTHTLCVRCGRR 25 (95)
Q Consensus 14 ktH~lCrRCG~~ 25 (95)
--|.+|..||+.
T Consensus 91 H~HliC~~Cg~v 102 (145)
T 2fe3_A 91 HYHAICENCGKI 102 (145)
T ss_dssp EEEEEETTTCCE
T ss_pred cceEEECCCCCE
Confidence 468999999984
No 74
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=25.65 E-value=31 Score=24.09 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=17.4
Q ss_pred cccccccCCCcccccccc------ccccccC
Q 034400 15 THTLCVRCGRRSFHLQKS------RCAACAY 39 (95)
Q Consensus 15 tH~lCrRCG~~syH~qKk------~Ca~CGy 39 (95)
...+|.-|++.-=.+.++ .|.+||.
T Consensus 102 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa 132 (139)
T 3cw2_K 102 AYVECSTCKSLDTILKKEKKSWYIVCLACGA 132 (139)
T ss_dssp CCSSCCSSSSSCCCSCSSCSTTTSSCCC---
T ss_pred HeeECCCCCCcCcEEEEeCCeEEEEecCCCC
Confidence 457899999988777765 5899986
No 75
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=25.01 E-value=32 Score=22.10 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=22.2
Q ss_pred CcccccccCCCcccccccc----ccccccCc
Q 034400 14 KTHTLCVRCGRRSFHLQKS----RCAACAYP 40 (95)
Q Consensus 14 ktH~lCrRCG~~syH~qKk----~Ca~CGyp 40 (95)
...|.|.-|+...|++-+. .|..|+|.
T Consensus 33 ~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~ 63 (84)
T 2row_A 33 HFPTNCEACMKPLWHMFKPPPALECRRCHIK 63 (84)
T ss_dssp SSCEECSSSSSEECCSSSCCCEEEESSSCCE
T ss_pred CCCcchhhcCHhhhccccCCCCCEecCCCCc
Confidence 4568999999999998554 89999874
No 76
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=24.51 E-value=24 Score=29.11 Aligned_cols=12 Identities=42% Similarity=1.030 Sum_probs=10.0
Q ss_pred ccccccccccCc
Q 034400 29 LQKSRCAACAYP 40 (95)
Q Consensus 29 ~qKk~Ca~CGyp 40 (95)
+.+.-|+.||||
T Consensus 12 LP~~nCg~CG~~ 23 (446)
T 4djd_C 12 LPKKNCGECGTP 23 (446)
T ss_dssp SCCCCCCTTSSS
T ss_pred CCCCCCCCCCcc
Confidence 456789999998
No 77
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.31 E-value=20 Score=24.03 Aligned_cols=12 Identities=33% Similarity=1.140 Sum_probs=10.1
Q ss_pred CcccccccCCCc
Q 034400 14 KTHTLCVRCGRR 25 (95)
Q Consensus 14 ktH~lCrRCG~~ 25 (95)
--|.+|..||+.
T Consensus 97 H~HliC~~Cg~v 108 (150)
T 2xig_A 97 HDHIICLHCGKI 108 (150)
T ss_dssp CEEEEETTTCCE
T ss_pred ceEEEECCCCCE
Confidence 479999999974
No 78
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=23.70 E-value=36 Score=21.92 Aligned_cols=37 Identities=11% Similarity=0.369 Sum_probs=26.6
Q ss_pred CCccc-ccccCCCccccccccccccccCcccccccCCccc
Q 034400 13 NKTHT-LCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSV 51 (95)
Q Consensus 13 ~ktH~-lCrRCG~~syH~qKk~Ca~CGyps~k~R~YnWs~ 51 (95)
-++.+ .|.-|=.-.--..+.-|.+||.+ -+++..=+.
T Consensus 11 ~k~~iLrC~aCf~~t~~~~k~FCp~CGn~--TL~Rvsvsv 48 (79)
T 2con_A 11 ARSYILRCHGCFKTTSDMNRVFCGHCGNK--TLKKVSVTI 48 (79)
T ss_dssp CCCEEEECSSSCCEESCSSCCSCSSSCCS--CCEEEECBC
T ss_pred eeeeeeEecccceECCCcccccccccCcc--cceEEEEEE
Confidence 34444 59999998888899999999986 344444333
No 79
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.15 E-value=74 Score=18.29 Aligned_cols=25 Identities=20% Similarity=0.664 Sum_probs=18.9
Q ss_pred ccccccCCCc------------cccccccccccccCc
Q 034400 16 HTLCVRCGRR------------SFHLQKSRCAACAYP 40 (95)
Q Consensus 16 H~lCrRCG~~------------syH~qKk~Ca~CGyp 40 (95)
-..|..|++. .||..--+|..|+-|
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~ 45 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKT 45 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCB
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCc
Confidence 3567777763 578888889999875
No 80
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.94 E-value=22 Score=24.32 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=10.2
Q ss_pred CcccccccCCCc
Q 034400 14 KTHTLCVRCGRR 25 (95)
Q Consensus 14 ktH~lCrRCG~~ 25 (95)
--|..|..||+.
T Consensus 105 H~HliC~~CG~v 116 (162)
T 4ets_A 105 HDHMICKNCGKI 116 (162)
T ss_dssp CEEEEETTTCCE
T ss_pred ccEEEECCCCCE
Confidence 478999999974
No 81
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.89 E-value=22 Score=23.81 Aligned_cols=12 Identities=33% Similarity=1.016 Sum_probs=10.0
Q ss_pred CcccccccCCCc
Q 034400 14 KTHTLCVRCGRR 25 (95)
Q Consensus 14 ktH~lCrRCG~~ 25 (95)
--|.+|..||+.
T Consensus 88 H~HliC~~Cg~v 99 (150)
T 2w57_A 88 HDHLVCLDCGEV 99 (150)
T ss_dssp CEEEEETTTCCE
T ss_pred eeEEEECCCCCE
Confidence 368999999974
No 82
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=22.56 E-value=39 Score=25.75 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=23.5
Q ss_pred CCCCCCCcccccccCCCc--ccc----ccccccccccCc--------ccccccCCc
Q 034400 8 FGKRRNKTHTLCVRCGRR--SFH----LQKSRCAACAYP--------AARKRTYNW 49 (95)
Q Consensus 8 fGKr~~ktH~lCrRCG~~--syH----~qKk~Ca~CGyp--------s~k~R~YnW 49 (95)
|+..- .....|..||.. ..- ----.|..||.= ..-+|.|.-
T Consensus 14 ~~~~~-~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~ 68 (345)
T 3k7a_M 14 RGPNL-NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSN 68 (345)
T ss_dssp ---CC-CCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--
T ss_pred cCccc-cCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCcccccccc
Confidence 55532 346679999985 222 235699999992 245666654
No 83
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=22.48 E-value=27 Score=23.35 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=18.5
Q ss_pred cccccCCCccccc-------cccccccccC
Q 034400 17 TLCVRCGRRSFHL-------QKSRCAACAY 39 (95)
Q Consensus 17 ~lCrRCG~~syH~-------qKk~Ca~CGy 39 (95)
..|..||.--|=. ..-.|..|||
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y 34 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSY 34 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSC
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCC
Confidence 4799999988833 3478999999
No 84
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=22.35 E-value=67 Score=18.52 Aligned_cols=32 Identities=22% Similarity=0.571 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCcccccccCCCccccccccccccccC
Q 034400 4 GTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAY 39 (95)
Q Consensus 4 GT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGy 39 (95)
|++++-.-....-..|..||..+ ...|+.|..
T Consensus 3 ~~~~~~~~~~~~~~~C~~C~~~~----~~~Cs~C~~ 34 (60)
T 2dj8_A 3 SGSSGINQQEDSSESCWNCGRKA----SETCSGCNT 34 (60)
T ss_dssp CCCCCCCCCCCCSCCCSSSCSCC----CEECTTTSC
T ss_pred CCCcccCcCCCCCcccccCCCCC----cccCCCCCC
Confidence 34444444445667899999854 578888874
No 85
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.32 E-value=30 Score=24.83 Aligned_cols=24 Identities=33% Similarity=0.822 Sum_probs=19.9
Q ss_pred ccccccCCCccccccc--c------ccccccC
Q 034400 16 HTLCVRCGRRSFHLQK--S------RCAACAY 39 (95)
Q Consensus 16 H~lCrRCG~~syH~qK--k------~Ca~CGy 39 (95)
..+|.-|++.-=.+.+ + .|.+||.
T Consensus 103 YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 103 FVLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp TTSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred eEECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 4789999999888885 2 4999998
No 86
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=22.24 E-value=41 Score=18.29 Aligned_cols=27 Identities=26% Similarity=0.626 Sum_probs=22.2
Q ss_pred CcccccccCCCcccc--ccccccccccCc
Q 034400 14 KTHTLCVRCGRRSFH--LQKSRCAACAYP 40 (95)
Q Consensus 14 ktH~lCrRCG~~syH--~qKk~Ca~CGyp 40 (95)
..-+.|--|++.-|- .|-..|..|+|.
T Consensus 9 ~~pt~C~~C~~~l~g~~~qg~~C~~C~~~ 37 (50)
T 1ptq_A 9 MSPTFCDHCGSLLWGLVKQGLKCEDCGMN 37 (50)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCCCcCCCCceeeccCCccCEeCCCCCe
Confidence 456889999999886 477899999985
No 87
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=22.16 E-value=43 Score=23.01 Aligned_cols=23 Identities=22% Similarity=0.767 Sum_probs=19.3
Q ss_pred cccccCCCccccccc-------cccccccC
Q 034400 17 TLCVRCGRRSFHLQK-------SRCAACAY 39 (95)
Q Consensus 17 ~lCrRCG~~syH~qK-------k~Ca~CGy 39 (95)
-.|..||+--|=... -.|..|||
T Consensus 25 ~FCPeCgNmL~pked~~~~~l~~~CrtCgY 54 (133)
T 3qt1_I 25 RFCRDCNNMLYPREDKENNRLLFECRTCSY 54 (133)
T ss_dssp CBCTTTCCBCBCCBCTTTCCBCCBCSSSCC
T ss_pred eeCCCCCCEeeECccCCCceeEEECCCCCC
Confidence 579999999887643 78999999
No 88
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.48 E-value=40 Score=20.70 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=22.4
Q ss_pred CcccccccCCCccccc--cccccccccCcc
Q 034400 14 KTHTLCVRCGRRSFHL--QKSRCAACAYPA 41 (95)
Q Consensus 14 ktH~lCrRCG~~syH~--qKk~Ca~CGyps 41 (95)
..-+.|--|+..-|.+ |--.|..|+|..
T Consensus 26 ~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~ 55 (83)
T 2yuu_A 26 GQPTFCSVCKDFVWGLNKQGYKCRQCNAAI 55 (83)
T ss_dssp SSCCCCSSSCCCCCSSSCCEEEETTTCCEE
T ss_pred CCCcChhhcChhhccccccccccCCcCCee
Confidence 3457899999999865 777899999853
No 89
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.44 E-value=1.1e+02 Score=18.08 Aligned_cols=26 Identities=35% Similarity=0.765 Sum_probs=19.0
Q ss_pred cccccccCCCc------------cccccccccccccCc
Q 034400 15 THTLCVRCGRR------------SFHLQKSRCAACAYP 40 (95)
Q Consensus 15 tH~lCrRCG~~------------syH~qKk~Ca~CGyp 40 (95)
+-..|.+|++. .||..=-+|..|+-+
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~ 51 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEAT 51 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCB
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCC
Confidence 45678888875 467777788888754
No 90
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.85 E-value=26 Score=22.73 Aligned_cols=15 Identities=27% Similarity=0.822 Sum_probs=11.4
Q ss_pred CcccccccCCCccccc
Q 034400 14 KTHTLCVRCGRRSFHL 29 (95)
Q Consensus 14 ktH~lCrRCG~~syH~ 29 (95)
--|.+|..||+. +++
T Consensus 81 h~HliC~~Cg~v-~~~ 95 (131)
T 2o03_A 81 HHHLVCRSCGST-IEV 95 (131)
T ss_dssp CEEEEETTTCCE-EEE
T ss_pred CCEEEeCCCCCE-EEE
Confidence 478999999974 344
No 91
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=20.81 E-value=32 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.653 Sum_probs=13.9
Q ss_pred ccccCCCccccccc---cccccccC
Q 034400 18 LCVRCGRRSFHLQK---SRCAACAY 39 (95)
Q Consensus 18 lCrRCG~~syH~qK---k~Ca~CGy 39 (95)
.|.-||+.+.--+- ..|.+||+
T Consensus 38 ~CpfCgk~~vkR~a~GIW~C~~Cg~ 62 (92)
T 3iz5_m 38 FCEFCGKFAVKRKAVGIWGCKDCGK 62 (92)
T ss_dssp CCTTTCSSCBEEEETTEEECSSSCC
T ss_pred cCcccCCCeeEecCcceEEcCCCCC
Confidence 57888877643221 45888876
No 92
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=20.72 E-value=31 Score=25.12 Aligned_cols=24 Identities=33% Similarity=0.822 Sum_probs=20.1
Q ss_pred ccccccCCCccccccc--c------ccccccC
Q 034400 16 HTLCVRCGRRSFHLQK--S------RCAACAY 39 (95)
Q Consensus 16 H~lCrRCG~~syH~qK--k------~Ca~CGy 39 (95)
..+|.-|++.-=.+.+ + .|.+||.
T Consensus 96 YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 96 FVLCPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp HHSCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred eEECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 4789999999888887 2 5999998
No 93
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=20.43 E-value=32 Score=22.97 Aligned_cols=22 Identities=23% Similarity=0.667 Sum_probs=13.1
Q ss_pred ccccCCCccccccc---cccccccC
Q 034400 18 LCVRCGRRSFHLQK---SRCAACAY 39 (95)
Q Consensus 18 lCrRCG~~syH~qK---k~Ca~CGy 39 (95)
.|.-||+.+.--+- ..|.+||+
T Consensus 38 ~CpfCgk~~vkR~a~GIW~C~~C~~ 62 (92)
T 3izc_m 38 DCSFCGKKTVKRGAAGIWTCSCCKK 62 (92)
T ss_dssp CCSSSCSSCCEEEETTEEECTTTCC
T ss_pred cCCCCCCceeeecccceEEcCCCCC
Confidence 57777766533222 45777775
No 94
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=20.29 E-value=43 Score=23.26 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCccccccccc-----cccccCc---ccccccCCc----cccccccccccccccccccccchhcccCcC
Q 034400 23 GRRSFHLQKSR-----CAACAYP---AARKRTYNW----SVKAIRRKTTGTGRMRYLRHVPRRFKSGFR 79 (95)
Q Consensus 23 G~~syH~qKk~-----Ca~CGyp---s~k~R~YnW----s~Ka~rr~ttGTGRmr~lk~v~rrfkngFr 79 (95)
|+-.||..|+. |+.||-+ -+..|.+.+ ..|.+++-.--.|=..-=+-|..|+...|-
T Consensus 28 Grlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG~lC~~CVr~rI~rAFL 96 (119)
T 3iz5_i 28 GKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVLSGPAVRERIIRAFL 96 (119)
T ss_dssp CCCCBCCCSCCSSCCCSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccCCCCCCCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCccchHHHHHHHHHHHHH
Confidence 78889888654 9999874 233443333 344444444455655555666666666664
No 95
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=20.27 E-value=48 Score=23.81 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=18.9
Q ss_pred cccccccCCCccccccccccccccCccc
Q 034400 15 THTLCVRCGRRSFHLQKSRCAACAYPAA 42 (95)
Q Consensus 15 tH~lCrRCG~~syH~qKk~Ca~CGyps~ 42 (95)
.--.|+-||-.--=..-..|..||-|..
T Consensus 170 ~~~~C~~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCPICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCBGG
T ss_pred cEEEECCCCCEEcCcCCCCCCCCCCChH
Confidence 3567999997622123368999998754
Done!