Query 034401
Match_columns 95
No_of_seqs 110 out of 216
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 02:28:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02704 GASA: Gibberellin reg 100.0 9.2E-38 2E-42 201.4 5.3 60 36-95 1-60 (60)
2 PF07172 GRP: Glycine rich pro 96.2 0.0067 1.5E-07 41.6 3.5 24 1-25 1-24 (95)
3 PF07127 Nodulin_late: Late no 77.1 2.1 4.6E-05 26.0 2.0 8 33-40 32-39 (54)
4 PF10868 DUF2667: Protein of u 69.1 2.3 5E-05 29.5 0.9 20 67-86 63-82 (90)
5 PF03058 Sar8_2: Sar8.2 family 62.9 11 0.00024 26.5 3.3 13 1-14 1-13 (93)
6 PF09257 BCMA-Tall_bind: BCMA, 62.5 6.8 0.00015 23.6 1.9 21 40-60 16-36 (39)
7 PHA02637 TNF-alpha-receptor-li 54.7 11 0.00023 27.7 2.2 26 59-87 41-74 (127)
8 PF15284 PAGK: Phage-encoded v 51.4 39 0.00085 22.1 4.2 23 5-27 5-27 (61)
9 PF07217 Het-C: Heterokaryon i 47.4 13 0.00028 33.4 2.0 34 1-34 1-35 (606)
10 PF02532 PsbI: Photosystem II 41.7 46 0.001 19.8 3.1 22 1-22 1-22 (36)
11 COG4537 ComGC Competence prote 33.8 33 0.00071 24.7 1.9 16 7-22 21-36 (107)
12 PF02950 Conotoxin: Conotoxin; 32.2 15 0.00033 22.7 0.0 12 5-16 2-13 (75)
13 PF15330 SIT: SHP2-interacting 31.9 65 0.0014 22.5 3.1 15 74-88 41-55 (107)
14 PF07699 GCC2_GCC3: GCC2 and G 31.8 65 0.0014 18.6 2.7 27 64-90 10-40 (48)
15 PF08396 Toxin_34: Spider toxi 29.8 35 0.00075 23.2 1.4 18 68-85 2-21 (75)
16 PLN02713 Probable pectinestera 28.6 50 0.0011 29.0 2.5 15 43-57 37-51 (566)
17 PF12606 RELT: Tumour necrosis 27.2 1.1E+02 0.0023 19.0 3.2 13 15-27 15-27 (50)
18 PF10690 Myticin-prepro: Mytic 25.4 31 0.00068 24.5 0.6 15 34-48 22-37 (98)
19 PF01826 TIL: Trypsin Inhibito 24.7 3.6 7.7E-05 24.3 -3.7 41 35-79 8-49 (55)
20 PRK10081 entericidin B membran 24.7 1.1E+02 0.0024 19.1 2.9 6 4-9 3-8 (48)
21 PF15079 DUF4546: Domain of un 20.2 34 0.00075 26.9 0.0 21 53-73 168-189 (205)
22 TIGR02052 MerP mercuric transp 20.2 82 0.0018 18.1 1.7 7 20-26 14-20 (92)
23 PLN02416 probable pectinestera 20.2 1.3E+02 0.0028 26.4 3.5 16 42-57 42-57 (541)
24 PLN02995 Probable pectinestera 20.1 1.4E+02 0.0031 26.1 3.7 17 40-56 36-52 (539)
No 1
>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.
Probab=100.00 E-value=9.2e-38 Score=201.37 Aligned_cols=60 Identities=62% Similarity=1.373 Sum_probs=59.4
Q ss_pred CChHHhhHHHhcCCCCchHHHHHHHhcccccccCCCCCCCCCCCCcccccccCCCCCCCC
Q 034401 36 ECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95 (95)
Q Consensus 36 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GtyGnk~~CPCY~~~~t~~g~pKCP 95 (95)
||+++|++|||+++++++||++||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus 1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP 60 (60)
T PF02704_consen 1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP 60 (60)
T ss_pred CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence 799999999999999999999999999999999999999999999999999999999999
No 2
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=96.16 E-value=0.0067 Score=41.65 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=11.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHH
Q 034401 1 MATSRSSILFLVSILLLITLSNVAE 25 (95)
Q Consensus 1 MA~~k~~~ll~~~lll~~~~~~~~~ 25 (95)
|| ||.++||.++|.++|+++..++
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhh
Confidence 99 8864444443333344443343
No 3
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=77.08 E-value=2.1 Score=26.03 Aligned_cols=8 Identities=25% Similarity=0.654 Sum_probs=5.4
Q ss_pred CCCCChHH
Q 034401 33 RSSECNPK 40 (95)
Q Consensus 33 ~~~~C~~~ 40 (95)
...||+..
T Consensus 32 ~d~DCp~~ 39 (54)
T PF07127_consen 32 TDSDCPKD 39 (54)
T ss_pred ccccCCCC
Confidence 45678776
No 4
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=69.11 E-value=2.3 Score=29.52 Aligned_cols=20 Identities=40% Similarity=0.720 Sum_probs=12.3
Q ss_pred ccCCCCCCCCCCCCcccccc
Q 034401 67 CVPPGTYGNKQVCPCYNNWK 86 (95)
Q Consensus 67 CVP~GtyGnk~~CPCY~~~~ 86 (95)
|+|-|...--..|-|..+-+
T Consensus 63 C~~~~~~~~~~~C~Cc~~~~ 82 (90)
T PF10868_consen 63 CVPVGPPPGDGVCYCCYYVK 82 (90)
T ss_pred eccCCCCCCCcEEEEeccCC
Confidence 67755544567786665544
No 5
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=62.94 E-value=11 Score=26.52 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=7.8
Q ss_pred CcchhHHHHHHHHH
Q 034401 1 MATSRSSILFLVSI 14 (95)
Q Consensus 1 MA~~k~~~ll~~~l 14 (95)
|+ ||..+||.++|
T Consensus 1 M~-~Ktnlfl~lSL 13 (93)
T PF03058_consen 1 MV-SKTNLFLCLSL 13 (93)
T ss_pred Cc-chhhhHHHHHH
Confidence 55 56555666666
No 6
>PF09257 BCMA-Tall_bind: BCMA, TALL-1 binding; InterPro: IPR015337 Cytokines can be grouped into a family on the basis of sequence, functional and structural similarities [, , ]. Tumor necrosis factor (TNF) (also known as TNF-alpha or cachectin) is a monocyte-derived cytotoxin that has been implicated in tumour regression, septic shock and cachexia [, ]. The protein is synthesised as a prohormone with an unusually long and atypical signal sequence, which is absent from the mature secreted cytokine []. A short hydrophobic stretch of amino acids serves to anchor the prohormone in lipid bilayers []. Both the mature protein and a partially-processed form of the hormone are secreted after cleavage of the propeptide []. There are a number of different families of TNF, but all these cytokines seem to form homotrimeric (or heterotrimeric in the case of LT-alpha/beta) complexes that are recognised by their specific receptors. Members of this entry, which are predominantly found in the tumour necrosis factor receptor superfamily member 17, BCMA, are required for binding to tumour necrosis factor ligand TALL-1 []. ; PDB: 2KN1_A 1OQD_R 1XU2_T.
Probab=62.46 E-value=6.8 Score=23.63 Aligned_cols=21 Identities=33% Similarity=0.874 Sum_probs=16.5
Q ss_pred HhhHHHhcCCCCchHHHHHHH
Q 034401 40 KCSYRCSATSHKKPCMFFCLK 60 (95)
Q Consensus 40 ~C~~RCs~~~~~~~C~~~C~~ 60 (95)
-|--|||+..-+-.|.+||+.
T Consensus 16 PChLRCsn~tPP~~Cq~YCna 36 (39)
T PF09257_consen 16 PCHLRCSNNTPPLPCQRYCNA 36 (39)
T ss_dssp EHHHHHTSSS--TTTHHHHHH
T ss_pred cceeecCCCCCCccchhhccc
Confidence 388999998788899999984
No 7
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=54.74 E-value=11 Score=27.70 Aligned_cols=26 Identities=46% Similarity=1.073 Sum_probs=17.8
Q ss_pred HHhcccccccCCCCCCC-------CCCC-Cccccccc
Q 034401 59 LKCCSKCLCVPPGTYGN-------KQVC-PCYNNWKT 87 (95)
Q Consensus 59 ~~CC~~C~CVP~GtyGn-------k~~C-PCY~~~~t 87 (95)
+.||.+| |||||=. .-+| ||-.+..|
T Consensus 41 ~~CC~kC---PPGt~v~~~Ct~~t~T~C~PCp~GTYT 74 (127)
T PHA02637 41 NLCCLSC---PPGTYASRLCDIKTNTQCTPCGSGTFT 74 (127)
T ss_pred CeEcCCC---CCCCEEeCcCCCCCCcccccCCCCCee
Confidence 6688888 7887632 3478 88776655
No 8
>PF15284 PAGK: Phage-encoded virulence factor
Probab=51.41 E-value=39 Score=22.11 Aligned_cols=23 Identities=39% Similarity=0.244 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 034401 5 RSSILFLVSILLLITLSNVAEAY 27 (95)
Q Consensus 5 k~~~ll~~~lll~~~~~~~~~~~ 27 (95)
|..+|.++++|.++.|+..+.|.
T Consensus 5 ksifL~l~~~LsA~~FSasamAa 27 (61)
T PF15284_consen 5 KSIFLALVFILSAAGFSASAMAA 27 (61)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Confidence 44455555456667777766664
No 9
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=47.38 E-value=13 Score=33.36 Aligned_cols=34 Identities=41% Similarity=0.636 Sum_probs=17.3
Q ss_pred CcchhHH-HHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 034401 1 MATSRSS-ILFLVSILLLITLSNVAEAYGRGKLRS 34 (95)
Q Consensus 1 MA~~k~~-~ll~~~lll~~~~~~~~~~~~~~~~~~ 34 (95)
||.++.. ..|++++++++++...+.|+|.|+.++
T Consensus 1 ~~~~~~~~~~ll~~~~~l~~~~~~~~AFGAGNI~s 35 (606)
T PF07217_consen 1 MASSRPFTTALLLLLLLLVLLPSPAHAFGAGNIAS 35 (606)
T ss_pred CccccccHHHHHHHHHHHHhcCCchhhccCCCccc
Confidence 7866652 222332333334444577877776543
No 10
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=41.71 E-value=46 Score=19.81 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=10.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 034401 1 MATSRSSILFLVSILLLITLSN 22 (95)
Q Consensus 1 MA~~k~~~ll~~~lll~~~~~~ 22 (95)
|.+.|+.+-.+++++++++++-
T Consensus 1 M~~LK~~Vy~vV~ffv~LFifG 22 (36)
T PF02532_consen 1 MLTLKIFVYTVVIFFVSLFIFG 22 (36)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeehhhHHHHHHHHhcc
Confidence 6677765544443444444443
No 11
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=33.78 E-value=33 Score=24.72 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 034401 7 SILFLVSILLLITLSN 22 (95)
Q Consensus 7 ~~ll~~~lll~~~~~~ 22 (95)
++|+++|+|+++++-+
T Consensus 21 iVLlIISiLlLl~iPN 36 (107)
T COG4537 21 IVLLIISILLLLFIPN 36 (107)
T ss_pred HHHHHHHHHHHHHccc
Confidence 3455555555444433
No 12
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=32.25 E-value=15 Score=22.70 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH
Q 034401 5 RSSILFLVSILL 16 (95)
Q Consensus 5 k~~~ll~~~lll 16 (95)
|++.+|++++||
T Consensus 2 KLt~vliVavLl 13 (75)
T PF02950_consen 2 KLTCVLIVAVLL 13 (75)
T ss_dssp ------------
T ss_pred CcchHHHHHHHH
Confidence 554444443433
No 13
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=31.87 E-value=65 Score=22.49 Aligned_cols=15 Identities=27% Similarity=0.569 Sum_probs=10.3
Q ss_pred CCCCCCCcccccccC
Q 034401 74 GNKQVCPCYNNWKTK 88 (95)
Q Consensus 74 Gnk~~CPCY~~~~t~ 88 (95)
+..|+=|||.|...+
T Consensus 41 ~~~E~~p~YgNL~~~ 55 (107)
T PF15330_consen 41 QPTEDDPCYGNLELQ 55 (107)
T ss_pred CCCCCCccccccccc
Confidence 445666888887653
No 14
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=31.78 E-value=65 Score=18.61 Aligned_cols=27 Identities=37% Similarity=0.754 Sum_probs=19.2
Q ss_pred cccccCCCCCCCC---CCC-CcccccccCCC
Q 034401 64 KCLCVPPGTYGNK---QVC-PCYNNWKTKEG 90 (95)
Q Consensus 64 ~C~CVP~GtyGnk---~~C-PCY~~~~t~~g 90 (95)
.|.=.|.|||-+. .+| +|-.+..|...
T Consensus 10 ~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~ 40 (48)
T PF07699_consen 10 KCQPCPKGTYQDEEGQTSCTPCPPGSTTSSE 40 (48)
T ss_pred ccCCCCCCccCCccCCccCccCcCCCccCCc
Confidence 4555689999543 579 89998877554
No 15
>PF08396 Toxin_34: Spider toxin omega agatoxin/Tx1 family; InterPro: IPR013605 The Tx1 family lethal spider neurotoxin induces excitatory symptoms in mice [].
Probab=29.80 E-value=35 Score=23.22 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=12.8
Q ss_pred cCCCCC--CCCCCCCccccc
Q 034401 68 VPPGTY--GNKQVCPCYNNW 85 (95)
Q Consensus 68 VP~Gty--Gnk~~CPCY~~~ 85 (95)
.|-|.. |+|++|.|+++|
T Consensus 2 i~~G~~CdG~k~dCqCc~~n 21 (75)
T PF08396_consen 2 IEVGADCDGDKSDCQCCRDN 21 (75)
T ss_pred cccCcccCCCcccccccCCC
Confidence 344443 788888888877
No 16
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=28.59 E-value=50 Score=29.04 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=10.8
Q ss_pred HHHhcCCCCchHHHH
Q 034401 43 YRCSATSHKKPCMFF 57 (95)
Q Consensus 43 ~RCs~~~~~~~C~~~ 57 (95)
.-|+.+.+++.|...
T Consensus 37 s~C~~T~YP~~C~ss 51 (566)
T PLN02713 37 TICNTTPDPSFCKSV 51 (566)
T ss_pred cccCCCCChHHHHHH
Confidence 346778888888765
No 17
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=27.22 E-value=1.1e+02 Score=19.04 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q 034401 15 LLLITLSNVAEAY 27 (95)
Q Consensus 15 ll~~~~~~~~~~~ 27 (95)
++.+++.+...++
T Consensus 15 lLg~~I~~~~K~y 27 (50)
T PF12606_consen 15 LLGLSICTTLKAY 27 (50)
T ss_pred HHHHHHHHHhhcc
Confidence 3444455555554
No 18
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=25.37 E-value=31 Score=24.46 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=9.1
Q ss_pred CCCChHH-hhHHHhcC
Q 034401 34 SSECNPK-CSYRCSAT 48 (95)
Q Consensus 34 ~~~C~~~-C~~RCs~~ 48 (95)
++-|.+. |+.+|..+
T Consensus 22 s~~CtS~yC~~fCgsa 37 (98)
T PF10690_consen 22 SISCTSYYCKKFCGSA 37 (98)
T ss_dssp ---HHHH-HHHHHHHT
T ss_pred ccccchhHHHHhcCCC
Confidence 4568887 88888754
No 19
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=24.72 E-value=3.6 Score=24.32 Aligned_cols=41 Identities=37% Similarity=0.973 Sum_probs=27.0
Q ss_pred CCChHHhhHHHhcCCCCchHHHHHHHhcccccccCCCCCCCCC-CC
Q 034401 35 SECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQ-VC 79 (95)
Q Consensus 35 ~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GtyGnk~-~C 79 (95)
.+|++.|...|+.......|... |=.-|.| |+|++-|.+ .|
T Consensus 8 ~~C~~~C~~tC~~~~~~~~C~~~---C~~gC~C-~~G~v~~~~~~C 49 (55)
T PF01826_consen 8 SECGSPCPRTCDNPNNPEPCSEP---CVEGCFC-PPGYVRNDNGRC 49 (55)
T ss_dssp ESSETSTTCBSSCTTTSSSCSSS----ESEEEE-TTTEEEETTSEE
T ss_pred CcccCCcCCcCCCCCCCcCcCCC---CCccCCC-CCCeeEcCCCCE
Confidence 47888999999987777666633 3344667 567775544 44
No 20
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=24.68 E-value=1.1e+02 Score=19.10 Aligned_cols=6 Identities=0% Similarity=0.030 Sum_probs=2.6
Q ss_pred hhHHHH
Q 034401 4 SRSSIL 9 (95)
Q Consensus 4 ~k~~~l 9 (95)
.|++++
T Consensus 3 Kk~i~~ 8 (48)
T PRK10081 3 KKTIAA 8 (48)
T ss_pred HHHHHH
Confidence 454333
No 21
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=20.22 E-value=34 Score=26.87 Aligned_cols=21 Identities=38% Similarity=1.081 Sum_probs=16.4
Q ss_pred hHHHHHHHhccccc-ccCCCCC
Q 034401 53 PCMFFCLKCCSKCL-CVPPGTY 73 (95)
Q Consensus 53 ~C~~~C~~CC~~C~-CVP~Gty 73 (95)
.-+-.|++||++|. |..-.+|
T Consensus 168 d~lH~C~tCcekcllCalk~n~ 189 (205)
T PF15079_consen 168 DSLHQCRTCCEKCLLCALKNNY 189 (205)
T ss_pred cchhhchhhhhhhhhhhccccc
Confidence 45667999999998 8776655
No 22
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=20.18 E-value=82 Score=18.12 Aligned_cols=7 Identities=43% Similarity=-0.158 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 034401 20 LSNVAEA 26 (95)
Q Consensus 20 ~~~~~~~ 26 (95)
+++..+|
T Consensus 14 ~~~~~~~ 20 (92)
T TIGR02052 14 TSLPAWA 20 (92)
T ss_pred hcchhhh
Confidence 3444444
No 23
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=20.15 E-value=1.3e+02 Score=26.37 Aligned_cols=16 Identities=19% Similarity=0.330 Sum_probs=12.5
Q ss_pred hHHHhcCCCCchHHHH
Q 034401 42 SYRCSATSHKKPCMFF 57 (95)
Q Consensus 42 ~~RCs~~~~~~~C~~~ 57 (95)
..-|+.+.++..|...
T Consensus 42 ks~C~~T~YP~lC~~s 57 (541)
T PLN02416 42 TSFCKSTPYPDACFDS 57 (541)
T ss_pred HHhcCCCCChHHHHHH
Confidence 4458889999999864
No 24
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=20.11 E-value=1.4e+02 Score=26.09 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=12.4
Q ss_pred HhhHHHhcCCCCchHHH
Q 034401 40 KCSYRCSATSHKKPCMF 56 (95)
Q Consensus 40 ~C~~RCs~~~~~~~C~~ 56 (95)
.=...|+.+.+++.|.+
T Consensus 36 ~Irs~C~~T~YP~lC~s 52 (539)
T PLN02995 36 DIDGWCDKTPYPDPCKC 52 (539)
T ss_pred HHHhhcCCCCChHHHHH
Confidence 33456899999998863
Done!