Query 034401
Match_columns 95
No_of_seqs 110 out of 216
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 03:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_I Photosystem II reaction 39.2 49 0.0017 19.1 3.8 23 1-23 1-23 (38)
2 1xu2_R Tumor necrosis factor r 32.6 16 0.00056 21.9 1.1 20 40-59 19-38 (47)
3 2h9e_C Anti-coagulant protein 31.2 4.2 0.00014 25.8 -1.8 51 34-88 12-79 (84)
4 4b7j_A Neuraminidase; hydrolas 30.4 15 0.00053 30.8 0.9 14 70-83 270-283 (469)
5 2htq_A Neuraminidase; zanamivi 29.9 20 0.0007 29.5 1.6 17 69-85 187-203 (390)
6 1nsc_A Neuraminidase; hydrolas 28.4 9.8 0.00033 31.3 -0.5 14 69-82 191-204 (390)
7 3tje_F Tumor necrosis factor r 24.3 28 0.00097 24.3 1.3 23 59-84 41-72 (156)
8 1v0z_A Neuraminidase; glycosid 24.1 16 0.00056 30.0 0.0 17 69-85 188-204 (389)
9 1f8d_A Neuraminidase; hydrolas 24.1 16 0.00056 30.0 0.0 17 69-85 188-204 (388)
10 4gdi_A Neuraminidase; influenz 22.0 18 0.0006 29.7 -0.2 16 69-84 190-205 (373)
11 1nmb_N N9 neuraminidase; compl 21.7 26 0.0009 29.5 0.8 12 71-82 272-283 (470)
12 3sal_A Neuraminidase; 6-bladed 20.4 18 0.00061 29.9 -0.5 16 69-84 188-203 (395)
13 3b7e_A Neuraminidase; 6-bladed 20.3 22 0.00075 29.2 0.1 17 69-85 187-203 (385)
No 1
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=39.21 E-value=49 Score=19.07 Aligned_cols=23 Identities=17% Similarity=0.389 Sum_probs=11.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHH
Q 034401 1 MATSRSSILFLVSILLLITLSNV 23 (95)
Q Consensus 1 MA~~k~~~ll~~~lll~~~~~~~ 23 (95)
|.+.|+.+-.+++.+++++++-+
T Consensus 1 MltLKi~Vy~vV~ffvsLFiFGf 23 (38)
T 3arc_I 1 METLKITVYIVVTFFVLLFVFGF 23 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEeeehhHHHHHHHHHHccc
Confidence 67777654444433444444433
No 2
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=32.64 E-value=16 Score=21.93 Aligned_cols=20 Identities=30% Similarity=0.829 Sum_probs=16.8
Q ss_pred HhhHHHhcCCCCchHHHHHH
Q 034401 40 KCSYRCSATSHKKPCMFFCL 59 (95)
Q Consensus 40 ~C~~RCs~~~~~~~C~~~C~ 59 (95)
-|..||+.++.+..|-.||.
T Consensus 19 pC~l~Cs~~~~p~tC~~fC~ 38 (47)
T 1xu2_R 19 PCQLRCSSNTPPLTCQRYCN 38 (47)
T ss_dssp EGGGTTTSSSCCGGGHHHHH
T ss_pred chhcccCCCCCcchHHHHHh
Confidence 38899997778889999986
No 3
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=31.22 E-value=4.2 Score=25.84 Aligned_cols=51 Identities=27% Similarity=0.643 Sum_probs=21.6
Q ss_pred CCCChH-HhhHHHhcC-------CC-CchH-HHHHHHhcccccccCCCCCCCC-------CCCCcccccccC
Q 034401 34 SSECNP-KCSYRCSAT-------SH-KKPC-MFFCLKCCSKCLCVPPGTYGNK-------QVCPCYNNWKTK 88 (95)
Q Consensus 34 ~~~C~~-~C~~RCs~~-------~~-~~~C-~~~C~~CC~~C~CVP~GtyGnk-------~~CPCY~~~~t~ 88 (95)
-.+|++ +|...|+.. .+ ...| .+.|. .-|.|. +|++-|. ++|||+.+-...
T Consensus 12 y~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~-~G~vr~~~g~CV~~~~Cpc~~~~~~y 79 (84)
T 2h9e_C 12 YDSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCE-EGFYRNKDDKCVSAEDCELDNMDFIY 79 (84)
T ss_dssp CC-------CCBCCCTTCC----------------------CEEC-SSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred eCCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCC-CCeEEcCCCCEECHHHCCCCcCCeEC
Confidence 357998 999999863 12 3578 56665 567775 4888763 578887655443
No 4
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=30.38 E-value=15 Score=30.82 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCccc
Q 034401 70 PGTYGNKQVCPCYN 83 (95)
Q Consensus 70 ~GtyGnk~~CPCY~ 83 (95)
+|+..|.|||.||.
T Consensus 270 ~gs~~HiEECSCY~ 283 (469)
T 4b7j_A 270 NAPNYHYEECSCYP 283 (469)
T ss_dssp CCTTCCCCSCEEEE
T ss_pred CCCcccceeeeecc
Confidence 45555555555554
No 5
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=29.92 E-value=20 Score=29.48 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCccccc
Q 034401 69 PPGTYGNKQVCPCYNNW 85 (95)
Q Consensus 69 P~GtyGnk~~CPCY~~~ 85 (95)
.+|+..|.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 36888999999999754
No 6
>1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A {Influenza b virus} SCOP: b.68.1.1 PDB: 1a4g_A* 1nsb_A* 1a4q_A* 1nsd_A* 3k37_A* 3k36_A* 3k38_A* 3k39_A* 3k3a_A* 1b9v_A* 1b9s_A* 1b9t_A* 1inv_A* 1ivb_A* 1inf_A* 1vcj_A*
Probab=28.43 E-value=9.8 Score=31.34 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCcc
Q 034401 69 PPGTYGNKQVCPCY 82 (95)
Q Consensus 69 P~GtyGnk~~CPCY 82 (95)
.+|+..|.|||.||
T Consensus 191 lsgsaqHiEECSCY 204 (390)
T 1nsc_A 191 PTGRVEHTEECTCG 204 (390)
T ss_dssp CEESCSBCEEEEEE
T ss_pred cCCCccceEeeeec
Confidence 35788899999999
No 7
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=24.30 E-value=28 Score=24.26 Aligned_cols=23 Identities=35% Similarity=0.950 Sum_probs=14.1
Q ss_pred HHhcccccccCCCCCC--------CCCCC-Ccccc
Q 034401 59 LKCCSKCLCVPPGTYG--------NKQVC-PCYNN 84 (95)
Q Consensus 59 ~~CC~~C~CVP~GtyG--------nk~~C-PCY~~ 84 (95)
+.||.+| |||+|= ..-+| ||-.+
T Consensus 41 ~~CC~~C---ppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 41 QFCHKPC---PPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp TTCSSCB---CTTEEESSCCCSSSCCCCEEECCTT
T ss_pred CeECCCC---CCCCeECCcCCCCCCCCcceeCCCC
Confidence 4566666 678772 13567 77665
No 8
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=24.13 E-value=16 Score=30.04 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCccccc
Q 034401 69 PPGTYGNKQVCPCYNNW 85 (95)
Q Consensus 69 P~GtyGnk~~CPCY~~~ 85 (95)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (389)
T 1v0z_A 188 LAGNAQHIEECSCYGAG 204 (389)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCccceEEeeeccCC
Confidence 46888999999999764
No 9
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=24.08 E-value=16 Score=30.02 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCccccc
Q 034401 69 PPGTYGNKQVCPCYNNW 85 (95)
Q Consensus 69 P~GtyGnk~~CPCY~~~ 85 (95)
.+|+..|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (388)
T 1f8d_A 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888999999999765
No 10
>4gdi_A Neuraminidase; influenza virus, beta-propeller, EC viral protein; HET: NAG BMA FUC FUL GOL MAN; 1.95A {Influenza a virus} PDB: 4gez_A* 4fvk_A* 4gdj_A*
Probab=22.02 E-value=18 Score=29.70 Aligned_cols=16 Identities=25% Similarity=0.168 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCcccc
Q 034401 69 PPGTYGNKQVCPCYNN 84 (95)
Q Consensus 69 P~GtyGnk~~CPCY~~ 84 (95)
.+|+..|.|||.||.+
T Consensus 190 l~~s~~HiEECSCYp~ 205 (373)
T 4gdi_A 190 LNTTGINFEYSTCYTI 205 (373)
T ss_dssp CCCTTCCCEEEEEEEE
T ss_pred cCCCCCCceeeeecCC
Confidence 3678889999999954
No 11
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex (hydrolase- immunoglobulin) complex; HET: NAG BMA MAN; 2.20A {Influenza a virus} SCOP: b.68.1.1
Probab=21.68 E-value=26 Score=29.47 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=5.2
Q ss_pred CCCCCCCCCCcc
Q 034401 71 GTYGNKQVCPCY 82 (95)
Q Consensus 71 GtyGnk~~CPCY 82 (95)
|+..+.|||.||
T Consensus 272 ~~~~HiEECscy 283 (470)
T 1nmb_N 272 GTAKHIEECSCY 283 (470)
T ss_dssp SSCSCCCSCEEE
T ss_pred CCcCceEeeeEe
Confidence 344444444444
No 12
>3sal_A Neuraminidase; 6-bladed beta-propeller, hydrolase, calcium binding, glycosy; HET: NAG BMA; 1.50A {Influenza a virus} PDB: 3san_A* 3ti8_A* 4gb1_A* 3o9j_A* 3o9k_A*
Probab=20.44 E-value=18 Score=29.87 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCcccc
Q 034401 69 PPGTYGNKQVCPCYNN 84 (95)
Q Consensus 69 P~GtyGnk~~CPCY~~ 84 (95)
++|...+.|||.||-+
T Consensus 188 l~~~~qHiEECSCYp~ 203 (395)
T 3sal_A 188 VSFQGGHIEECSCYPN 203 (395)
T ss_dssp ECCTTCCCEEEEEEEE
T ss_pred cCCCCccceeeeecCC
Confidence 5788899999999965
No 13
>3b7e_A Neuraminidase; 6-bladed beta-propeller, glycosidase, hydrolase, membrane, transmembrane, virion; HET: NAG FUC ZMR; 1.45A {Influenza a virus} PDB: 3beq_A* 3cye_A* 2hty_A* 2hu0_A* 2hu4_A* 3cl2_A* 3ckz_A* 3cl0_A* 3ti4_A* 3nss_A* 3ti3_A* 3ti5_A* 3ti6_A* 2htv_A* 2htw_A*
Probab=20.33 E-value=22 Score=29.25 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCccccc
Q 034401 69 PPGTYGNKQVCPCYNNW 85 (95)
Q Consensus 69 P~GtyGnk~~CPCY~~~ 85 (95)
.+|+..|.|||.||-+.
T Consensus 187 l~gs~~HiEECSCYp~~ 203 (385)
T 3b7e_A 187 LNAPNYHYEECSCYPDT 203 (385)
T ss_dssp CCCTTCCCEEEEEEEET
T ss_pred cCCCccceEeeeEecCC
Confidence 46888999999999754
Done!